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The crystal structures and phase behaviour of phase II and the metastable phases III' and III of cyclohexanol, C
6H
11OH, have been determined using high-resolution neutron powder, synchrotron X-ray powder and single-crystal X-ray diffraction techniques. Cyclohexanol-II is formed by a transition from the plastic phase I cubic structure at 265 K and crystallizes in a tetragonal structure, space group
(
Z' = 1), in which the molecules are arranged in a hydrogen-bonded tetrameric ring motif. The structures of phases III' and III are monoclinic, space groups
P2
1/
c (
Z' = 3) and
Pc (
Z' = 2), respectively, and are characterized by the formation of hydrogen-bonded molecular chains with a threefold-helical and wave-like nature, respectively. Phase III crystallizes at 195 K from a sample of phase I that is supercooled to
ca 100 K. Alternatively, phase III may be grown
via phase III', the latter transforming from supercooled phase I at
ca 200 K. Phase III' is particularly unstable and is metastable with respect to both I and II. Its growth is realised only under very restricted conditions, thus making its characterization especially challenging. The cyclohexanol molecules adopt a chair conformation in all three phases with the hydroxyl groups in an equatorial orientation. No evidence was found indicating hydroxyl groups adopting an axial orientation, contrary to the majority of spectroscopic literature on solid-state cyclohexanol; however, the H atom of the equatorial OH groups is found to adopt both in-plane and out-of-plane orientations.
Supporting information
CCDC references: 705583; 705584; 705585
Data collection: SMART (Bruker-Nonius, 2001) for III_120K. Cell refinement: SAINT (Bruker-Nonius, 2003) for III_120K. Data reduction: SAINT (Bruker-Nonius, 2003) for III_120K. Program(s) used to solve structure: SIR92 (Altomare et al., 1994) for III_120K. Program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003) for III_120K; TOPAS for II_2K, III_2K. Software used to prepare material for publication: PLATON (Spek, 2003) for III_120K.
Crystal data top
C6H12O | F(000) = 672 |
Mr = 100.16 | Dx = 1.077 Mg m−3 |
Monoclinic, P21/c | Synchrotron radiation, λ = 0.68700 Å |
Hall symbol: -P 2ybc | Cell parameters from 191 reflections |
a = 5.7877 (11) Å | θ = 2–14° |
b = 20.267 (5) Å | µ = 0.07 mm−1 |
c = 15.971 (3) Å | T = 120 K |
β = 98.289 (7)° | Cylindrical, colourless |
V = 1853.8 (7) Å3 | 0.2 × 0.2 × 0.1 mm |
Z = 12 | |
Data collection top
Bruker SMART diffractometer | 399 reflections with I > 2.0σ(I) |
Curved silicon monochromator | Rint = 0.266 |
ω scans | θmax = 19.1°, θmin = 1.6° |
Absorption correction: multi-scan SADABS (Sheldrick, 2004) | h = −4→4 |
Tmin = 0.77, Tmax = 0.98 | k = −9→14 |
1448 measured reflections | l = −12→12 |
423 independent reflections | |
Refinement top
Refinement on F | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.232 | H-atom parameters constrained |
wR(F2) = 0.231 | Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982)
[weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)]
where Ai are the Chebychev coefficients listed below and x = F /Fmax
Method = Robust Weighting (Prince, 1982)
W = [weight] * [1-(deltaF/6*sigmaF)2]2
Ai are:
14.0 -0.901 4.35 4.28 |
S = 1.09 | (Δ/σ)max = 0.000033 |
399 reflections | Δρmax = 0.61 e Å−3 |
85 parameters | Δρmin = −0.51 e Å−3 |
81 restraints | |
Crystal data top
C6H12O | V = 1853.8 (7) Å3 |
Mr = 100.16 | Z = 12 |
Monoclinic, P21/c | Synchrotron radiation, λ = 0.68700 Å |
a = 5.7877 (11) Å | µ = 0.07 mm−1 |
b = 20.267 (5) Å | T = 120 K |
c = 15.971 (3) Å | 0.2 × 0.2 × 0.1 mm |
β = 98.289 (7)° | |
Data collection top
Bruker SMART diffractometer | 423 independent reflections |
Absorption correction: multi-scan SADABS (Sheldrick, 2004) | 399 reflections with I > 2.0σ(I) |
Tmin = 0.77, Tmax = 0.98 | Rint = 0.266 |
1448 measured reflections | θmax = 19.1° |
Refinement top
R[F2 > 2σ(F2)] = 0.232 | 81 restraints |
wR(F2) = 0.231 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.61 e Å−3 |
399 reflections | Δρmin = −0.51 e Å−3 |
85 parameters | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O11 | 0.270 (4) | 0.2892 (16) | 0.6811 (12) | 0.073 (5)* | |
H11 | 0.1629 | 0.2575 | 0.6841 | 0.0835* | |
C12 | 0.241 (5) | 0.3589 (17) | 0.6913 (17) | 0.074 (5)* | |
H121 | 0.3401 | 0.3825 | 0.6566 | 0.0850* | |
C13 | −0.013 (5) | 0.3701 (16) | 0.6554 (15) | 0.075 (5)* | |
H131 | −0.1153 | 0.3453 | 0.6868 | 0.0860* | |
H132 | −0.0369 | 0.3559 | 0.5968 | 0.0860* | |
C14 | −0.078 (4) | 0.4420 (17) | 0.6582 (14) | 0.075 (5)* | |
H141 | −0.2433 | 0.4480 | 0.6385 | 0.0860* | |
H142 | 0.0127 | 0.4664 | 0.6221 | 0.0860* | |
C15 | −0.020 (5) | 0.4693 (17) | 0.7448 (16) | 0.075 (5)* | |
H151 | −0.0508 | 0.5165 | 0.7444 | 0.0870* | |
H152 | −0.1189 | 0.4472 | 0.7802 | 0.0870* | |
C16 | 0.233 (5) | 0.4579 (17) | 0.7794 (15) | 0.075 (5)* | |
H161 | 0.2611 | 0.4738 | 0.8372 | 0.0860* | |
H162 | 0.3319 | 0.4817 | 0.7456 | 0.0860* | |
C17 | 0.294 (4) | 0.3858 (18) | 0.7783 (14) | 0.075 (5)* | |
H171 | 0.2013 | 0.3622 | 0.8147 | 0.0860* | |
H172 | 0.4585 | 0.3798 | 0.7989 | 0.0860* | |
O21 | −0.638 (4) | 0.7370 (13) | 0.7109 (12) | 0.047 (5)* | |
H21 | −0.5180 | 0.7545 | 0.7462 | 0.0502* | |
C22 | −0.596 (4) | 0.6939 (14) | 0.6432 (14) | 0.048 (5)* | |
H221 | −0.7339 | 0.6988 | 0.6001 | 0.0540* | |
C23 | −0.595 (4) | 0.6228 (14) | 0.6660 (12) | 0.049 (5)* | |
H231 | −0.7348 | 0.6111 | 0.6899 | 0.0540* | |
H232 | −0.4583 | 0.6155 | 0.7078 | 0.0540* | |
C24 | −0.578 (4) | 0.5800 (12) | 0.5895 (14) | 0.049 (5)* | |
H241 | −0.7201 | 0.5850 | 0.5496 | 0.0540* | |
H242 | −0.5603 | 0.5343 | 0.6073 | 0.0540* | |
C25 | −0.369 (4) | 0.5978 (12) | 0.5485 (14) | 0.049 (5)* | |
H251 | −0.2258 | 0.5888 | 0.5864 | 0.0550* | |
H252 | −0.3719 | 0.5719 | 0.4971 | 0.0550* | |
C26 | −0.369 (4) | 0.6692 (13) | 0.5263 (12) | 0.049 (5)* | |
H261 | −0.5040 | 0.6774 | 0.4835 | 0.0550* | |
H262 | −0.2272 | 0.6807 | 0.5038 | 0.0550* | |
C27 | −0.386 (4) | 0.7117 (12) | 0.6029 (15) | 0.049 (5)* | |
H271 | −0.4038 | 0.7574 | 0.5854 | 0.0540* | |
H272 | −0.2443 | 0.7069 | 0.6433 | 0.0540* | |
O31 | −0.950 (4) | 0.8036 (17) | 0.3123 (13) | 0.074 (5)* | |
H31 | −0.8443 | 0.7902 | 0.2798 | 0.0818* | |
C32 | −0.845 (5) | 0.8213 (15) | 0.4013 (15) | 0.075 (5)* | |
H321 | −0.7569 | 0.7838 | 0.4279 | 0.0830* | |
C33 | −1.031 (3) | 0.8408 (17) | 0.4517 (16) | 0.075 (5)* | |
H331 | −1.1264 | 0.8760 | 0.4237 | 0.0840* | |
H332 | −1.1283 | 0.8027 | 0.4582 | 0.0840* | |
C34 | −0.928 (5) | 0.8661 (17) | 0.5374 (13) | 0.075 (5)* | |
H341 | −1.0502 | 0.8804 | 0.5690 | 0.0840* | |
H342 | −0.8417 | 0.8299 | 0.5669 | 0.0840* | |
C35 | −0.763 (4) | 0.9225 (15) | 0.5303 (15) | 0.076 (5)* | |
H351 | −0.8518 | 0.9600 | 0.5053 | 0.0840* | |
H352 | −0.6869 | 0.9340 | 0.5865 | 0.0840* | |
C36 | −0.578 (3) | 0.9038 (18) | 0.4792 (16) | 0.076 (5)* | |
H361 | −0.4852 | 0.9427 | 0.4721 | 0.0840* | |
H362 | −0.4798 | 0.8694 | 0.5075 | 0.0840* | |
C37 | −0.681 (5) | 0.8776 (17) | 0.3935 (13) | 0.075 (5)* | |
H371 | −0.7658 | 0.9134 | 0.3629 | 0.0830* | |
H372 | −0.5577 | 0.8626 | 0.3628 | 0.0830* | |
Geometric parameters (Å, º) top
O31—C32 | 1.51 (3) | O11—H11 | 0.900 |
O31—H31 | 0.900 | C27—C26 | 1.510 (16) |
C37—C32 | 1.502 (16) | C27—C22 | 1.500 (16) |
C37—C36 | 1.507 (16) | C27—H271 | 0.970 |
C37—H371 | 0.970 | C27—H272 | 0.970 |
C37—H372 | 0.970 | C25—C24 | 1.500 (16) |
C34—C33 | 1.503 (16) | C25—C26 | 1.491 (16) |
C34—C35 | 1.501 (16) | C25—H251 | 0.971 |
C34—H341 | 0.970 | C25—H252 | 0.971 |
C34—H342 | 0.970 | C24—C23 | 1.513 (16) |
C15—C14 | 1.483 (16) | C24—H241 | 0.971 |
C15—C16 | 1.506 (16) | C24—H242 | 0.970 |
C15—H151 | 0.971 | C32—C33 | 1.485 (16) |
C15—H152 | 0.970 | C32—H321 | 0.979 |
C14—C13 | 1.510 (17) | C12—H121 | 0.979 |
C14—H141 | 0.969 | C33—H331 | 0.970 |
C14—H142 | 0.970 | C33—H332 | 0.971 |
C13—C12 | 1.514 (16) | C35—C36 | 1.486 (16) |
C13—H131 | 0.970 | C35—H351 | 0.971 |
C13—H132 | 0.970 | C35—H352 | 0.970 |
O21—C22 | 1.44 (3) | C36—H361 | 0.971 |
O21—H21 | 0.900 | C36—H362 | 0.970 |
C16—C17 | 1.504 (17) | C26—H261 | 0.973 |
C16—H161 | 0.969 | C26—H262 | 0.972 |
C16—H162 | 0.970 | C23—C22 | 1.487 (16) |
C17—C12 | 1.484 (17) | C23—H231 | 0.971 |
C17—H171 | 0.970 | C23—H232 | 0.972 |
C17—H172 | 0.971 | C22—H221 | 0.981 |
O11—C12 | 1.43 (4) | | |
| | | |
C32—O31—H31 | 113.6 | H251—C25—H252 | 109.5 |
C32—C37—C36 | 111.3 (8) | C25—C24—C23 | 111.5 (8) |
C32—C37—H371 | 109.2 | C25—C24—H241 | 110.4 |
C36—C37—H371 | 107.4 | C23—C24—H241 | 108.7 |
C32—C37—H372 | 109.0 | C25—C24—H242 | 107.5 |
C36—C37—H372 | 110.3 | C23—C24—H242 | 109.1 |
H371—C37—H372 | 109.6 | H241—C24—H242 | 109.6 |
C33—C34—C35 | 111.4 (8) | O31—C32—C37 | 106 (2) |
C33—C34—H341 | 110.6 | O31—C32—C33 | 111 (2) |
C35—C34—H341 | 109.4 | C37—C32—C33 | 111.1 (8) |
C33—C34—H342 | 107.0 | O31—C32—H321 | 109.7 |
C35—C34—H342 | 108.9 | C37—C32—H321 | 109.1 |
H341—C34—H342 | 109.6 | C33—C32—H321 | 110.3 |
C14—C15—C16 | 111.3 (8) | C13—C12—C17 | 111.0 (8) |
C14—C15—H151 | 110.1 | C13—C12—O11 | 103 (2) |
C16—C15—H151 | 108.7 | C17—C12—O11 | 117 (2) |
C14—C15—H152 | 107.2 | C13—C12—H121 | 109.2 |
C16—C15—H152 | 109.9 | C17—C12—H121 | 106.9 |
H151—C15—H152 | 109.6 | O11—C12—H121 | 109.2 |
C15—C14—C13 | 111.4 (8) | C34—C33—C32 | 111.1 (8) |
C15—C14—H141 | 109.8 | C34—C33—H331 | 107.0 |
C13—C14—H141 | 110.5 | C32—C33—H331 | 110.8 |
C15—C14—H142 | 107.1 | C34—C33—H332 | 109.5 |
C13—C14—H142 | 108.3 | C32—C33—H332 | 108.8 |
H141—C14—H142 | 109.7 | H331—C33—H332 | 109.6 |
C14—C13—C12 | 111.5 (8) | C34—C35—C36 | 111.3 (8) |
C14—C13—H131 | 108.1 | C34—C35—H351 | 108.9 |
C12—C13—H131 | 111.0 | C36—C35—H351 | 110.6 |
C14—C13—H132 | 108.3 | C34—C35—H352 | 108.9 |
C12—C13—H132 | 108.5 | C36—C35—H352 | 107.6 |
H131—C13—H132 | 109.5 | H351—C35—H352 | 109.6 |
C22—O21—H21 | 120.8 | C37—C36—C35 | 111.7 (8) |
C15—C16—C17 | 111.1 (8) | C37—C36—H361 | 109.5 |
C15—C16—H161 | 108.6 | C35—C36—H361 | 108.3 |
C17—C16—H161 | 109.0 | C37—C36—H362 | 107.4 |
C15—C16—H162 | 109.9 | C35—C36—H362 | 110.4 |
C17—C16—H162 | 108.6 | H361—C36—H362 | 109.7 |
H161—C16—H162 | 109.6 | C27—C26—C25 | 111.0 (8) |
C16—C17—C12 | 110.6 (9) | C27—C26—H261 | 109.6 |
C16—C17—H171 | 108.8 | C25—C26—H261 | 107.7 |
C12—C17—H171 | 108.9 | C27—C26—H262 | 108.6 |
C16—C17—H172 | 109.7 | C25—C26—H262 | 110.4 |
C12—C17—H172 | 109.3 | H261—C26—H262 | 109.5 |
H171—C17—H172 | 109.5 | C24—C23—C22 | 110.9 (8) |
C12—O11—H11 | 127.0 | C24—C23—H231 | 109.5 |
C26—C27—C22 | 111.1 (8) | C22—C23—H231 | 111.2 |
C26—C27—H271 | 109.1 | C24—C23—H232 | 108.9 |
C22—C27—H271 | 107.0 | C22—C23—H232 | 106.8 |
C26—C27—H272 | 109.6 | H231—C23—H232 | 109.5 |
C22—C27—H272 | 110.5 | C27—C22—C23 | 111.3 (8) |
H271—C27—H272 | 109.5 | C27—C22—O21 | 114 (2) |
C24—C25—C26 | 111.4 (8) | C23—C22—O21 | 114 (2) |
C24—C25—H251 | 110.6 | C27—C22—H221 | 107.7 |
C26—C25—H251 | 107.6 | C23—C22—H221 | 104.0 |
C24—C25—H252 | 108.8 | O21—C22—H221 | 105.0 |
C26—C25—H252 | 108.9 | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O11—H11···O31i | 0.90 | 1.75 | 2.651 (2) | 179 |
O21—H21···O11ii | 0.90 | 1.85 | 2.749 (2) | 179 |
O31—H31···O21iii | 0.90 | 1.82 | 2.723 (2) | 178 |
Symmetry codes: (i) −x−1, −y+1, −z+1; (ii) −x, y+1/2, −z+3/2; (iii) x, −y+3/2, z−1/2. |
(II_2K) perdeutero cyclohexanol
top
Crystal data top
C6D12O | Z = 8 |
Mr = 112.23 | Dx = 1.271 Mg m−3 |
Tetragonal, P421c | Melting point: 298 K |
a = 10.53507 (3) Å | Neutron radiation, λ = ? Å |
c = 10.53715 (6) Å | T = 2 K |
V = 1169.49 (1) Å3 | × × mm |
Data collection top
HRPD diffractometer | k = ?→? |
h = ?→? | l = ?→? |
Refinement top
Least-squares matrix: full | 2 restraints |
S = 1.15 | (Δ/σ)max = 0.03 |
76 parameters | |
Crystal data top
C6D12O | V = 1169.49 (1) Å3 |
Mr = 112.23 | Z = 8 |
Tetragonal, P421c | Neutron radiation, λ = ? Å |
a = 10.53507 (3) Å | T = 2 K |
c = 10.53715 (6) Å | × × mm |
Refinement top
S = 1.15 | 2 restraints |
76 parameters | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
C1 | −0.1270 (5) | −0.6423 (4) | 0.0952 (4) | 0.0035 (3)* | |
C2 | −0.1983 (4) | −0.5627 (4) | 0.1935 (5) | 0.0035 (3)* | |
C3 | −0.3396 (4) | −0.5675 (4) | 0.1716 (4) | 0.0035 (3)* | |
C4 | −0.3857 (4) | −0.7063 (4) | 0.1694 (4) | 0.0035 (3)* | |
C5 | −0.3125 (4) | −0.7808 (4) | 0.0701 (5) | 0.0035 (3)* | |
C6 | −0.1743 (4) | −0.7771 (5) | 0.0964 (4) | 0.0035 (3)* | |
D11 | −0.0249 (5) | −0.6403 (6) | 0.1138 (5) | 0.0178 (4)* | |
D12 | −0.1408 (5) | −0.6015 (5) | −0.0033 (6) | 0.0178 (4)* | |
D21 | −0.1626 (5) | −0.4631 (4) | 0.1949 (6) | 0.0178 (4)* | |
D22 | −0.1797 (5) | −0.6008 (5) | 0.2898 (5) | 0.0178 (4)* | |
D31 | −0.3629 (5) | −0.5200 (5) | 0.0847 (5) | 0.0178 (4)* | |
D32 | −0.3910 (5) | −0.5173 (6) | 0.2471 (5) | 0.0178 (4)* | |
D41 | −0.4892 (5) | −0.7100 (6) | 0.1489 (5) | 0.0178 (4)* | |
D42 | −0.3759 (5) | −0.7456 (5) | 0.2661 (5) | 0.0178 (4)* | |
D51 | −0.3323 (5) | −0.7476 (7) | −0.0263 (5) | 0.0178 (4)* | |
D52 | −0.3494 (5) | −0.8792 (5) | 0.0679 (4) | 0.0178 (4)* | |
D62 | −0.1571 (5) | −0.8225 (4) | 0.1883 (5) | 0.0178 (4)* | |
D71 | −0.1318 (9) | −0.9335 (9) | −0.0025 (8) | 0.028 (2)* | 0.729 (13) |
O61 | −0.1021 (5) | −0.8456 (7) | −0.0002 (6) | 0.0087 (14)* | |
D72 | −0.0174 (13) | −0.871 (2) | 0.011 (2) | 0.028 (2)* | 0.271 (13) |
Geometric parameters (Å, º) top
C1—C2 | 1.530 (5) | C6—C1 | 1.505 (6) |
C1—C6 | 1.505 (6) | C6—C5 | 1.483 (6) |
C1—D11 | 1.094 (6) | C6—D62 | 1.096 (7) |
C1—D12 | 1.132 (7) | C6—O61 | 1.461 (7) |
C2—C1 | 1.530 (5) | D11—C1 | 1.094 (6) |
C2—C3 | 1.507 (6) | D12—C1 | 1.132 (7) |
C2—D21 | 1.115 (5) | D21—C2 | 1.115 (5) |
C2—D22 | 1.109 (6) | D22—C2 | 1.109 (6) |
C3—C2 | 1.507 (6) | D31—C3 | 1.072 (6) |
C3—C4 | 1.541 (5) | D32—C3 | 1.099 (6) |
C3—D31 | 1.072 (6) | D41—C4 | 1.112 (5) |
C3—D32 | 1.099 (6) | D42—C4 | 1.105 (7) |
C4—C3 | 1.541 (5) | D51—C5 | 1.094 (7) |
C4—C5 | 1.518 (5) | D52—C5 | 1.107 (5) |
C4—D41 | 1.112 (5) | D62—C6 | 1.096 (7) |
C4—D42 | 1.105 (7) | D71—O61 | 0.977 (7) |
C5—C4 | 1.518 (5) | O61—C6 | 1.461 (7) |
C5—C6 | 1.483 (6) | O61—D71 | 0.977 (7) |
C5—D51 | 1.094 (7) | O61—D72 | 0.938 (11) |
C5—D52 | 1.107 (5) | | |
| | | |
C2—C1—C6 | 110.4 (4) | C3—C4—C5 | 109.9 (4) |
C2—C1—D11 | 110.5 (4) | C3—C4—D41 | 110.2 (5) |
C2—C1—D12 | 110.5 (5) | C3—C4—D42 | 108.2 (4) |
C6—C1—D11 | 110.0 (5) | C5—C4—D41 | 110.2 (5) |
C6—C1—D12 | 108.8 (5) | C5—C4—D42 | 113.2 (5) |
D11—C1—D12 | 106.5 (6) | D41—C4—D42 | 104.9 (5) |
C1—C2—C3 | 111.3 (4) | C4—C5—C6 | 110.9 (4) |
C1—C2—D21 | 111.0 (5) | C4—C5—D51 | 112.2 (5) |
C1—C2—D22 | 109.6 (4) | C4—C5—D52 | 108.6 (5) |
C3—C2—D21 | 111.5 (5) | C6—C5—D51 | 110.6 (6) |
C3—C2—D22 | 107.6 (5) | C6—C5—D52 | 111.9 (5) |
D21—C2—D22 | 105.6 (7) | D51—C5—D52 | 102.3 (6) |
C2—C3—C4 | 110.2 (3) | C1—C6—C5 | 110.4 (4) |
C2—C3—D31 | 109.9 (5) | C1—C6—D62 | 111.4 (5) |
C2—C3—D32 | 111.1 (5) | C1—C6—O61 | 106.8 (4) |
C4—C3—D31 | 111.1 (4) | C5—C6—D62 | 108.4 (5) |
C4—C3—D32 | 108.2 (5) | C5—C6—O61 | 111.6 (4) |
D31—C3—D32 | 106.3 (5) | D62—C6—O61 | 108.3 (5) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O61—D71···O61i | 0.98 (1) | 1.79 (1) | 2.758 (9) | 169 (1) |
O61—D72···O61ii | 0.94 (2) | 1.84 (2) | 2.758 (9) | 167 (2) |
Symmetry codes: (i) −y−1, x−1, −z; (ii) y+1, −x−1, −z. |
(III_2K) perdeutero cyclohexanol
top
Crystal data top
C6D12O | V = 590.93 (1) Å3 |
Mr = 112.23 | Z = 4 |
Monoclinic, Pc | Dx = 1.261 Mg m−3 |
Hall symbol: P -2yc | Melting point: 298 K |
a = 12.0244 (2) Å | Neutron radiation, λ = ? Å |
b = 6.36200 (12) Å | T = 2 K |
c = 8.10998 (18) Å | × × mm |
β = 107.7331 (18)° | |
Data collection top
HRPD diffractometer | k = ?→? |
h = ?→? | l = ?→? |
Refinement top
Least-squares matrix: full | 0 restraints |
S = 2.29 | (Δ/σ)max = 0.03 |
16 parameters | |
Crystal data top
C6D12O | β = 107.7331 (18)° |
Mr = 112.23 | V = 590.93 (1) Å3 |
Monoclinic, Pc | Z = 4 |
a = 12.0244 (2) Å | Neutron radiation, λ = ? Å |
b = 6.36200 (12) Å | T = 2 K |
c = 8.10998 (18) Å | × × mm |
Refinement top
S = 2.29 | 0 restraints |
16 parameters | |
Special details top
Refinement. The two molecules comprising the asymmetric unit were refined as rigid bodies with common intramolecular bond length and bond angle parameters. Based on the e.s.d.s associated with the translational and rotational variables for each body, bond length and angle e.s.d s are typically 0.005 Å and 0.07 ° respectively. Parameters associated with the two hydroxyl groups (O—H bond length, C—O—H bond angle and H—O—C—C torsional angle) were defined as refinable paramters and their e.s.d. values are reported below. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C11 | 0.44022 | 0.27581 | 0.18713 | 0.0063 (4)* | |
C12 | 0.52225 | 0.45863 | 0.18709 | 0.0063 (4)* | |
C13 | 0.6474 | 0.39674 | 0.28574 | 0.0063 (4)* | |
C14 | 0.68323 | 0.20529 | 0.20048 | 0.0063 (4)* | |
C15 | 0.60121 | 0.02257 | 0.20028 | 0.0063 (4)* | |
C16 | 0.47604 | 0.08437 | 0.10168 | 0.0063 (4)* | |
O11 | 0.32258 | 0.33719 | 0.0997 | 0.0091 (4)* | |
D111 | 0.44491 | 0.23707 | 0.32002 | 0.0181 (4)* | |
D121 | 0.49707 | 0.59438 | 0.24961 | 0.0181 (4)* | |
D122 | 0.51684 | 0.49838 | 0.05424 | 0.0181 (4)* | |
D131 | 0.65334 | 0.35873 | 0.41923 | 0.0181 (4)* | |
D132 | 0.70581 | 0.52718 | 0.28397 | 0.0181 (4)* | |
D141 | 0.77238 | 0.16063 | 0.27222 | 0.0181 (4)* | |
D142 | 0.67845 | 0.2435 | 0.06733 | 0.0181 (4)* | |
D151 | 0.60658 | −0.01745 | 0.33319 | 0.0181 (4)* | |
D152 | 0.62642 | −0.11325 | 0.13786 | 0.0181 (4)* | |
D161 | 0.41762 | −0.0461 | 0.10329 | 0.0181 (4)* | |
D162 | 0.47009 | 0.12228 | −0.03183 | 0.0181 (4)* | |
D11 | 0.30724 | 0.46328 | 0.16489 | 0.0290 (4)* | |
C21 | 0.14493 | 0.27554 | 0.66548 | 0.0063 (4)* | |
C22 | 0.06787 | 0.45848 | 0.68477 | 0.0063 (4)* | |
C23 | −0.06023 | 0.40268 | 0.59995 | 0.0063 (4)* | |
C24 | −0.09121 | 0.20679 | 0.68537 | 0.0063 (4)* | |
C25 | −0.01414 | 0.02395 | 0.66634 | 0.0063 (4)* | |
C26 | 0.11397 | 0.07965 | 0.75109 | 0.0063 (4)* | |
O21 | 0.26503 | 0.33148 | 0.73988 | 0.0091 (4)* | |
D211 | 0.13099 | 0.24431 | 0.52849 | 0.0181 (4)* | |
D221 | 0.08948 | 0.59749 | 0.62211 | 0.0181 (4)* | |
D222 | 0.08251 | 0.49071 | 0.82164 | 0.0181 (4)* | |
D231 | −0.07541 | 0.37222 | 0.46257 | 0.0181 (4)* | |
D232 | −0.11498 | 0.5331 | 0.61548 | 0.0181 (4)* | |
D241 | −0.18256 | 0.16656 | 0.62343 | 0.0261 (7)* | |
D242 | −0.07717 | 0.23747 | 0.82259 | 0.0181 (4)* | |
D251 | −0.02875 | −0.00856 | 0.52938 | 0.0181 (4)* | |
D252 | −0.03578 | −0.11513 | 0.72889 | 0.0181 (4)* | |
D261 | 0.16875 | −0.05081 | 0.73572 | 0.0181 (4)* | |
D262 | 0.12916 | 0.11001 | 0.88849 | 0.0181 (4)* | |
D21 | 0.28744 | 0.33853 | 0.8701 | 0.0290 (4)* | |
Geometric parameters (Å, º) top
C11—C12 | 1.525 | C21—C22 | 1.525 |
C11—C16 | 1.526 | C21—C26 | 1.526 |
C11—O11 | 1.430 | C21—O21 | 1.430 |
C11—D111 | 1.090 | C21—D211 | 1.090 |
C11—D11 | 1.958 | C22—C21 | 1.525 |
C12—C11 | 1.525 | C22—C23 | 1.525 |
C12—C13 | 1.525 | C22—D221 | 1.090 |
C12—D121 | 1.090 | C22—D222 | 1.089 |
C12—D122 | 1.089 | C23—C22 | 1.525 |
C13—C12 | 1.525 | C23—C24 | 1.526 |
C13—C14 | 1.526 | C23—D231 | 1.090 |
C13—D131 | 1.090 | C23—D232 | 1.090 |
C13—D132 | 1.090 | C24—C23 | 1.526 |
C14—C13 | 1.526 | C24—C25 | 1.524 |
C14—C15 | 1.524 | C24—D241 | 1.090 |
C14—D141 | 1.090 | C24—D242 | 1.091 |
C14—D142 | 1.091 | C25—C24 | 1.524 |
C15—C14 | 1.524 | C25—C26 | 1.525 |
C15—C16 | 1.525 | C25—D251 | 1.090 |
C15—D151 | 1.090 | C25—D252 | 1.090 |
C15—D152 | 1.090 | C26—C21 | 1.526 |
C16—C11 | 1.526 | C26—C25 | 1.525 |
C16—C15 | 1.525 | C26—D261 | 1.090 |
C16—D161 | 1.090 | C26—D262 | 1.090 |
C16—D162 | 1.090 | O21—D11i | 1.587 |
O11—C11 | 1.430 | O21—C21 | 1.430 |
O11—D11 | 1.008 | O21—D21 | 1.008 |
D111—C11 | 1.090 | D211—C21 | 1.090 |
D121—C12 | 1.090 | D221—C22 | 1.090 |
D122—C12 | 1.089 | D222—C22 | 1.089 |
D131—C13 | 1.090 | D231—C23 | 1.090 |
D132—C13 | 1.090 | D232—C23 | 1.090 |
D141—C14 | 1.090 | D241—C24 | 1.090 |
D142—C14 | 1.091 | D242—C24 | 1.091 |
D151—C15 | 1.090 | D251—C25 | 1.090 |
D152—C15 | 1.090 | D252—C25 | 1.090 |
D161—C16 | 1.090 | D261—C26 | 1.090 |
D162—C16 | 1.090 | D262—C26 | 1.090 |
D11—O11 | 1.008 | D21—O21 | 1.008 |
| | | |
C12—C11—C16 | 109.65 | C22—C21—O21 | 109.49 |
C12—C11—O11 | 109.49 | C22—C21—D211 | 109.51 |
C12—C11—D111 | 109.50 | C26—C21—O21 | 111.46 |
C16—C11—O11 | 111.46 | C26—C21—D211 | 109.36 |
C16—C11—D111 | 109.36 | O21—C21—D211 | 107.30 |
O11—C11—D111 | 107.30 | C21—C22—C23 | 109.74 |
C11—C12—C13 | 109.74 | C21—C22—D221 | 109.43 |
C11—C12—D121 | 109.44 | C21—C22—D222 | 109.48 |
C11—C12—D122 | 109.48 | C23—C22—D221 | 109.26 |
C13—C12—D121 | 109.26 | C23—C22—D222 | 109.33 |
C13—C12—D122 | 109.32 | D221—C22—D222 | 109.56 |
D121—C12—D122 | 109.56 | C22—C23—C24 | 109.75 |
C12—C13—C14 | 109.75 | C22—C23—D231 | 109.51 |
C12—C13—D131 | 109.50 | C22—C23—D232 | 109.46 |
C12—C13—D132 | 109.46 | C24—C23—D231 | 109.31 |
C14—C13—D131 | 109.31 | C24—C23—D232 | 109.24 |
C14—C13—D132 | 109.25 | D231—C23—D232 | 109.53 |
D131—C13—D132 | 109.53 | C23—C24—C25 | 109.71 |
C13—C14—C15 | 109.71 | C23—C24—D241 | 109.48 |
C13—C14—D141 | 109.48 | C23—C24—D242 | 109.48 |
C13—C14—D142 | 109.48 | C25—C24—D241 | 109.42 |
C15—C14—D141 | 109.42 | C25—C24—D242 | 109.25 |
C15—C14—D142 | 109.25 | D241—C24—D242 | 109.46 |
D141—C14—D142 | 109.45 | C24—C25—C26 | 109.80 |
C14—C15—C16 | 109.80 | C24—C25—D251 | 109.49 |
C14—C15—D151 | 109.48 | C24—C25—D252 | 109.49 |
C14—C15—D152 | 109.49 | C26—C25—D251 | 109.29 |
C16—C15—D151 | 109.29 | C26—C25—D252 | 109.29 |
C16—C15—D152 | 109.29 | D251—C25—D252 | 109.44 |
D151—C15—D152 | 109.44 | C21—C26—C25 | 109.71 |
C11—C16—C15 | 109.72 | C21—C26—D261 | 109.26 |
C11—C16—D161 | 109.27 | C21—C26—D262 | 109.39 |
C11—C16—D162 | 109.39 | C25—C26—D261 | 109.51 |
C15—C16—D161 | 109.51 | C25—C26—D262 | 109.48 |
C15—C16—D162 | 109.48 | D261—C26—D262 | 109.44 |
D161—C16—D162 | 109.43 | D11i—O21—C21 | 116.26 |
C11—O11—D11 | 105.58 | D11i—O21—D21 | 110.48 |
O11—D11—O21ii | 170.46 | C21—O21—D21 | 111.49 |
C22—C21—C26 | 109.65 | | |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) x, −y+1, z−1/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O11—D11···O21ii | 1.01 (1) | 1.59 (1) | 2.587 (9) | 171 (1) |
O21—D21···O11iii | 1.01 (1) | 1.78 (1) | 2.787 (9) | 177 (1) |
Symmetry codes: (ii) x, −y+1, z−1/2; (iii) x, y, z+1. |
Experimental details
| (III_120K) | (II_2K) | (III_2K) |
Crystal data |
Chemical formula | C6H12O | C6D12O | C6D12O |
Mr | 100.16 | 112.23 | 112.23 |
Crystal system, space group | Monoclinic, P21/c | Tetragonal, P421c | Monoclinic, Pc |
Temperature (K) | 120 | 2 | 2 |
a, b, c (Å) | 5.7877 (11), 20.267 (5), 15.971 (3) | 10.53507 (3), 10.535067, 10.53715 (6) | 12.0244 (2), 6.36200 (12), 8.10998 (18) |
α, β, γ (°) | 90, 98.289 (7), 90 | 90, 90, 90 | 90, 107.7331 (18), 90 |
V (Å3) | 1853.8 (7) | 1169.49 (1) | 590.93 (1) |
Z | 12 | 8 | 4 |
Radiation type | Synchrotron, λ = 0.68700 Å | Neutron, λ = ? Å | Neutron, λ = ? Å |
µ (mm−1) | 0.07 | ? | ? |
Crystal size (mm) | 0.2 × 0.2 × 0.1 | × × | × × |
|
Data collection |
Diffractometer | Bruker SMART diffractometer | HRPD diffractometer | HRPD diffractometer |
Absorption correction | Multi-scan SADABS (Sheldrick, 2004) | ? No correction is applied. | ? No correction is applied. |
Tmin, Tmax | 0.77, 0.98 | 1.000, 1.000 | 1.000, 1.000 |
No. of measured, independent and observed reflections | 1448, 423, 399 [I > 2.0σ(I)] | ?, ?, ? (?) | ?, ?, ? (?) |
Rint | 0.266 | ? | ? |
θmax (°) | 19.1 | ? | ? |
(sin θ/λ)max (Å−1) | 0.477 | – | – |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.232, 0.231, 1.09 | ?, ?, 1.15 | ?, ?, 2.29 |
No. of reflections | 399 | ? | ? |
No. of parameters | 85 | 76 | 16 |
No. of restraints | 81 | 2 | 0 |
H-atom treatment | H-atom parameters constrained | – | – |
Δρmax, Δρmin (e Å−3) | 0.61, −0.51 | ?, ? | ?, ? |
Selected geometric parameters (Å, º) for (III_120K) topO31—C32 | 1.51 (3) | C17—C12 | 1.484 (17) |
C37—C32 | 1.502 (16) | O11—C12 | 1.43 (4) |
C37—C36 | 1.507 (16) | C27—C26 | 1.510 (16) |
C34—C33 | 1.503 (16) | C27—C22 | 1.500 (16) |
C34—C35 | 1.501 (16) | C25—C24 | 1.500 (16) |
C15—C14 | 1.483 (16) | C25—C26 | 1.491 (16) |
C15—C16 | 1.506 (16) | C24—C23 | 1.513 (16) |
C14—C13 | 1.510 (17) | C32—C33 | 1.485 (16) |
C13—C12 | 1.514 (16) | C35—C36 | 1.486 (16) |
O21—C22 | 1.44 (3) | C23—C22 | 1.487 (16) |
C16—C17 | 1.504 (17) | | |
| | | |
C32—C37—C36 | 111.3 (8) | C37—C32—C33 | 111.1 (8) |
C33—C34—C35 | 111.4 (8) | C13—C12—C17 | 111.0 (8) |
C14—C15—C16 | 111.3 (8) | C13—C12—O11 | 103 (2) |
C15—C14—C13 | 111.4 (8) | C17—C12—O11 | 117 (2) |
C14—C13—C12 | 111.5 (8) | C34—C33—C32 | 111.1 (8) |
C15—C16—C17 | 111.1 (8) | C34—C35—C36 | 111.3 (8) |
C16—C17—C12 | 110.6 (9) | C37—C36—C35 | 111.7 (8) |
C26—C27—C22 | 111.1 (8) | C27—C26—C25 | 111.0 (8) |
C24—C25—C26 | 111.4 (8) | C24—C23—C22 | 110.9 (8) |
C25—C24—C23 | 111.5 (8) | C27—C22—C23 | 111.3 (8) |
O31—C32—C37 | 106 (2) | C27—C22—O21 | 114 (2) |
O31—C32—C33 | 111 (2) | C23—C22—O21 | 114 (2) |
Hydrogen-bond geometry (Å, º) for (III_120K) top
D—H···A | D—H | H···A | D···A | D—H···A |
O11—H11···O31i | 0.90 | 1.75 | 2.651 (2) | 179 |
O21—H21···O11ii | 0.90 | 1.85 | 2.749 (2) | 179 |
O31—H31···O21iii | 0.90 | 1.82 | 2.723 (2) | 178 |
Symmetry codes: (i) −x−1, −y+1, −z+1; (ii) −x, y+1/2, −z+3/2; (iii) x, −y+3/2, z−1/2. |
Hydrogen-bond geometry (Å, º) for (II_2K) top
D—H···A | D—H | H···A | D···A | D—H···A |
O61—D71···O61i | 0.978 (12) | 1.792 (11) | 2.758 (9) | 168.7 (9) |
O61—D72···O61ii | 0.939 (16) | 1.836 (16) | 2.758 (9) | 166.7 (19) |
Symmetry codes: (i) −y−1, x−1, −z; (ii) y+1, −x−1, −z. |
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