Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270112043545/wq3019sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270112043545/wq3019Isup2.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270112043545/wq3019IIsup3.hkl |
CCDC references: 848753; 848754
Samples of (I) and (II) were prepared according to the procedure of Liaskopoulos et al. (2007), starting from 2-hydroxybenzaldehyde or 2-hydroxy-5-methylbenzaldehyde with 4-chlorobut-2-yn-1-ol in equimolar amounts. Crystals suitable for single-crystal X-ray diffraction were grown by slow evaporation from solutions in ethanol.
The crystal of (I) was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100 (2)K.
In (I), the hydroxy H atom was located in a difference map and refined freely. All other H atoms were placed geometrically and treated as riding, with C—H = 0.95 Å (aromatic) and Uiso(H) = 1.2Ueq(C). In (II), all the H atoms (other than the water H atoms) were placed geometrically and treated as riding, with C—H = 0.95 (aromatic) or 0.99 Å (methylene) and Uiso(H) = 1.2Ueq(C). The water molecule is disordered, with site occupancies of 0.571 (18) and 0.429 (18). The water H atoms were located from difference Fourier maps but were restrained to O—H = 0.85 Å, and H···H distances between the major and minor components were treated using SADI instructions [Please restate in software-independent terms], allowing them to ride on their respective parent atom with Uiso(H) = 1.5Ueq(O).
For both compounds, data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
C11H9NO3 | F(000) = 424 |
Mr = 203.19 | Dx = 1.493 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2956 reflections |
a = 9.6423 (2) Å | θ = 2.7–31.5° |
b = 8.3406 (1) Å | µ = 0.11 mm−1 |
c = 13.1461 (2) Å | T = 100 K |
β = 121.218 (1)° | Block, colourless |
V = 904.16 (3) Å3 | 0.38 × 0.22 × 0.06 mm |
Z = 4 |
Bruker SMART APEXII CCD area-detector diffractometer | 3743 independent reflections |
Radiation source: fine-focus sealed tube | 2956 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
ϕ and ω scans | θmax = 34.2°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −15→11 |
Tmin = 0.971, Tmax = 0.993 | k = −13→12 |
14247 measured reflections | l = −20→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.120 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0607P)2 + 0.2418P] where P = (Fo2 + 2Fc2)/3 |
3743 reflections | (Δ/σ)max < 0.001 |
136 parameters | Δρmax = 0.58 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
C11H9NO3 | V = 904.16 (3) Å3 |
Mr = 203.19 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.6423 (2) Å | µ = 0.11 mm−1 |
b = 8.3406 (1) Å | T = 100 K |
c = 13.1461 (2) Å | 0.38 × 0.22 × 0.06 mm |
β = 121.218 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 3743 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2956 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.993 | Rint = 0.030 |
14247 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.120 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.58 e Å−3 |
3743 reflections | Δρmin = −0.28 e Å−3 |
136 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100 (2)K (1) K. Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.06136 (9) | 0.44242 (9) | 0.41723 (6) | 0.01613 (15) | |
O2 | 0.55740 (9) | 0.22910 (9) | 0.56470 (6) | 0.01662 (15) | |
O3 | 0.51567 (9) | 0.44947 (9) | 0.78401 (7) | 0.01745 (15) | |
H3 | 0.5008 | 0.4019 | 0.8360 | 0.026* | |
N1 | 0.45316 (10) | 0.22839 (11) | 0.43995 (7) | 0.01659 (17) | |
C1 | 0.33012 (11) | 0.31989 (11) | 0.41987 (8) | 0.01312 (16) | |
C2 | 0.18522 (11) | 0.35464 (11) | 0.30568 (8) | 0.01320 (17) | |
C3 | 0.16741 (12) | 0.32326 (12) | 0.19477 (8) | 0.01553 (18) | |
H3A | 0.2564 | 0.2827 | 0.1906 | 0.019* | |
C4 | 0.02032 (13) | 0.35123 (12) | 0.09120 (9) | 0.01709 (19) | |
H4A | 0.0080 | 0.3293 | 0.0160 | 0.021* | |
C5 | −0.10995 (12) | 0.41179 (12) | 0.09773 (9) | 0.01786 (19) | |
H5A | −0.2107 | 0.4310 | 0.0266 | 0.021* | |
C6 | −0.09396 (12) | 0.44429 (12) | 0.20694 (9) | 0.01660 (18) | |
H6A | −0.1833 | 0.4852 | 0.2105 | 0.020* | |
C7 | 0.05389 (11) | 0.41660 (11) | 0.31120 (8) | 0.01349 (17) | |
C8 | 0.21731 (11) | 0.48962 (12) | 0.51724 (9) | 0.01482 (17) | |
H8A | 0.2147 | 0.4843 | 0.5914 | 0.018* | |
H8B | 0.2416 | 0.6015 | 0.5064 | 0.018* | |
C9 | 0.34623 (11) | 0.38035 (11) | 0.52650 (8) | 0.01245 (16) | |
C10 | 0.48983 (11) | 0.32032 (11) | 0.61385 (8) | 0.01306 (16) | |
C11 | 0.58585 (12) | 0.33159 (12) | 0.74621 (8) | 0.01494 (17) | |
H11A | 0.5865 | 0.2264 | 0.7814 | 0.018* | |
H11B | 0.6993 | 0.3611 | 0.7734 | 0.018* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0125 (3) | 0.0234 (4) | 0.0140 (3) | 0.0010 (2) | 0.0079 (3) | −0.0016 (3) |
O2 | 0.0147 (3) | 0.0213 (3) | 0.0139 (3) | 0.0048 (3) | 0.0074 (3) | 0.0004 (2) |
O3 | 0.0234 (4) | 0.0165 (3) | 0.0164 (3) | 0.0006 (3) | 0.0131 (3) | 0.0001 (2) |
N1 | 0.0152 (4) | 0.0221 (4) | 0.0130 (3) | 0.0037 (3) | 0.0077 (3) | −0.0003 (3) |
C1 | 0.0132 (4) | 0.0149 (4) | 0.0134 (4) | 0.0005 (3) | 0.0084 (3) | 0.0002 (3) |
C2 | 0.0134 (4) | 0.0139 (4) | 0.0131 (4) | 0.0004 (3) | 0.0074 (3) | 0.0005 (3) |
C3 | 0.0170 (4) | 0.0172 (4) | 0.0143 (4) | 0.0001 (3) | 0.0094 (3) | −0.0003 (3) |
C4 | 0.0202 (4) | 0.0177 (4) | 0.0127 (4) | −0.0023 (3) | 0.0080 (3) | −0.0008 (3) |
C5 | 0.0156 (4) | 0.0183 (4) | 0.0152 (4) | −0.0015 (3) | 0.0048 (3) | −0.0003 (3) |
C6 | 0.0126 (4) | 0.0183 (4) | 0.0174 (4) | 0.0004 (3) | 0.0067 (3) | −0.0008 (3) |
C7 | 0.0132 (4) | 0.0145 (4) | 0.0137 (4) | −0.0003 (3) | 0.0077 (3) | −0.0003 (3) |
C8 | 0.0137 (4) | 0.0165 (4) | 0.0143 (4) | 0.0021 (3) | 0.0072 (3) | −0.0013 (3) |
C9 | 0.0134 (4) | 0.0132 (4) | 0.0132 (4) | 0.0005 (3) | 0.0086 (3) | 0.0002 (3) |
C10 | 0.0133 (4) | 0.0139 (4) | 0.0142 (4) | 0.0004 (3) | 0.0087 (3) | 0.0003 (3) |
C11 | 0.0153 (4) | 0.0156 (4) | 0.0132 (4) | 0.0007 (3) | 0.0069 (3) | 0.0006 (3) |
O1—C7 | 1.3749 (12) | C4—C5 | 1.3971 (15) |
O1—C8 | 1.4475 (12) | C4—H4A | 0.9500 |
O2—C10 | 1.3628 (12) | C5—C6 | 1.3890 (14) |
O2—N1 | 1.4111 (11) | C5—H5A | 0.9500 |
O3—C11 | 1.4213 (12) | C6—C7 | 1.3924 (13) |
O3—H3 | 0.8643 | C6—H6A | 0.9500 |
N1—C1 | 1.3173 (12) | C8—C9 | 1.4945 (13) |
C1—C9 | 1.4205 (13) | C8—H8A | 0.9900 |
C1—C2 | 1.4545 (13) | C8—H8B | 0.9900 |
C2—C3 | 1.4015 (13) | C9—C10 | 1.3559 (13) |
C2—C7 | 1.4040 (13) | C10—C11 | 1.4912 (13) |
C3—C4 | 1.3850 (14) | C11—H11A | 0.9900 |
C3—H3A | 0.9500 | C11—H11B | 0.9900 |
C7—O1—C8 | 116.57 (8) | O1—C7—C6 | 117.44 (9) |
C10—O2—N1 | 109.02 (7) | O1—C7—C2 | 122.37 (8) |
C11—O3—H3 | 105.3 | C6—C7—C2 | 120.06 (9) |
C1—N1—O2 | 104.80 (7) | O1—C8—C9 | 109.68 (8) |
N1—C1—C9 | 112.43 (8) | O1—C8—H8A | 109.7 |
N1—C1—C2 | 127.29 (9) | C9—C8—H8A | 109.7 |
C9—C1—C2 | 120.20 (8) | O1—C8—H8B | 109.7 |
C3—C2—C7 | 119.68 (9) | C9—C8—H8B | 109.7 |
C3—C2—C1 | 124.80 (9) | H8A—C8—H8B | 108.2 |
C7—C2—C1 | 115.44 (8) | C10—C9—C1 | 104.24 (8) |
C4—C3—C2 | 120.14 (9) | C10—C9—C8 | 137.34 (9) |
C4—C3—H3A | 119.9 | C1—C9—C8 | 118.37 (8) |
C2—C3—H3A | 119.9 | C9—C10—O2 | 109.51 (8) |
C3—C4—C5 | 119.72 (9) | C9—C10—C11 | 135.14 (9) |
C3—C4—H4A | 120.1 | O2—C10—C11 | 115.35 (8) |
C5—C4—H4A | 120.1 | O3—C11—C10 | 109.36 (8) |
C6—C5—C4 | 120.82 (9) | O3—C11—H11A | 109.8 |
C6—C5—H5A | 119.6 | C10—C11—H11A | 109.8 |
C4—C5—H5A | 119.6 | O3—C11—H11B | 109.8 |
C5—C6—C7 | 119.58 (9) | C10—C11—H11B | 109.8 |
C5—C6—H6A | 120.2 | H11A—C11—H11B | 108.3 |
C7—C6—H6A | 120.2 | ||
C10—O2—N1—C1 | 0.81 (10) | C3—C2—C7—C6 | 0.99 (14) |
O2—N1—C1—C9 | −0.90 (11) | C1—C2—C7—C6 | −175.87 (9) |
O2—N1—C1—C2 | −177.60 (9) | C7—O1—C8—C9 | −48.39 (11) |
N1—C1—C2—C3 | −14.11 (16) | N1—C1—C9—C10 | 0.66 (11) |
C9—C1—C2—C3 | 169.42 (9) | C2—C1—C9—C10 | 177.63 (8) |
N1—C1—C2—C7 | 162.58 (10) | N1—C1—C9—C8 | 178.48 (9) |
C9—C1—C2—C7 | −13.90 (13) | C2—C1—C9—C8 | −4.55 (13) |
C7—C2—C3—C4 | −0.86 (14) | O1—C8—C9—C10 | −148.72 (11) |
C1—C2—C3—C4 | 175.70 (9) | O1—C8—C9—C1 | 34.40 (12) |
C2—C3—C4—C5 | 0.39 (15) | C1—C9—C10—O2 | −0.11 (10) |
C3—C4—C5—C6 | −0.06 (15) | C8—C9—C10—O2 | −177.28 (11) |
C4—C5—C6—C7 | 0.19 (15) | C1—C9—C10—C11 | 179.97 (10) |
C8—O1—C7—C6 | −151.03 (9) | C8—C9—C10—C11 | 2.8 (2) |
C8—O1—C7—C2 | 33.13 (13) | N1—O2—C10—C9 | −0.42 (11) |
C5—C6—C7—O1 | −176.60 (9) | N1—O2—C10—C11 | 179.52 (8) |
C5—C6—C7—C2 | −0.66 (15) | C9—C10—C11—O3 | −9.43 (16) |
C3—C2—C7—O1 | 176.73 (9) | O2—C10—C11—O3 | 170.65 (8) |
C1—C2—C7—O1 | −0.14 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···N1i | 0.86 | 1.98 | 2.8367 (11) | 173 |
C11—H11A···O3ii | 0.99 | 2.48 | 3.2970 (12) | 139 |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) −x+1, y−1/2, −z+3/2. |
C12H11NO3·H2O | F(000) = 992 |
Mr = 235.23 | Dx = 1.443 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 2770 reflections |
a = 31.2492 (5) Å | θ = 1.5–32.5° |
b = 4.6714 (1) Å | µ = 0.11 mm−1 |
c = 17.3083 (4) Å | T = 100 K |
β = 121.030 (2)° | Block, colourless |
V = 2165.06 (8) Å3 | 0.38 × 0.14 × 0.09 mm |
Z = 8 |
Bruker SMART APEXII CCD area-detector diffractometer | 3852 independent reflections |
Radiation source: fine-focus sealed tube | 3028 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
ϕ and ω scans | θmax = 32.5°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −46→46 |
Tmin = 0.982, Tmax = 0.990 | k = −6→6 |
25453 measured reflections | l = −26→26 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.133 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0649P)2 + 1.7458P] where P = (Fo2 + 2Fc2)/3 |
3852 reflections | (Δ/σ)max = 0.001 |
166 parameters | Δρmax = 0.42 e Å−3 |
0 restraints | Δρmin = −0.35 e Å−3 |
C12H11NO3·H2O | V = 2165.06 (8) Å3 |
Mr = 235.23 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 31.2492 (5) Å | µ = 0.11 mm−1 |
b = 4.6714 (1) Å | T = 100 K |
c = 17.3083 (4) Å | 0.38 × 0.14 × 0.09 mm |
β = 121.030 (2)° |
Bruker SMART APEXII CCD area-detector diffractometer | 3852 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3028 reflections with I > 2σ(I) |
Tmin = 0.982, Tmax = 0.990 | Rint = 0.040 |
25453 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 0 restraints |
wR(F2) = 0.133 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.42 e Å−3 |
3852 reflections | Δρmin = −0.35 e Å−3 |
166 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.84189 (3) | 0.69155 (19) | 0.76621 (6) | 0.01794 (19) | |
O2 | 0.96508 (3) | 1.26156 (19) | 0.97468 (6) | 0.01735 (19) | |
O3 | 0.94331 (4) | 1.3327 (3) | 0.74896 (6) | 0.0317 (3) | |
H3 | 0.9459 | 1.4751 | 0.7220 | 0.048* | |
N1 | 0.93733 (4) | 1.0989 (2) | 1.00266 (7) | 0.0173 (2) | |
C1 | 0.90132 (4) | 0.9813 (2) | 0.92860 (8) | 0.0149 (2) | |
C2 | 0.86272 (4) | 0.7885 (2) | 0.92054 (8) | 0.0144 (2) | |
C3 | 0.85405 (4) | 0.7253 (3) | 0.99037 (8) | 0.0168 (2) | |
H3A | 0.8738 | 0.8163 | 1.0472 | 0.020* | |
C4 | 0.81731 (4) | 0.5328 (3) | 0.97848 (8) | 0.0173 (2) | |
C5 | 0.78845 (5) | 0.4040 (3) | 0.89353 (8) | 0.0189 (2) | |
H5 | 0.7629 | 0.2731 | 0.8838 | 0.023* | |
C6 | 0.79642 (4) | 0.4637 (3) | 0.82328 (8) | 0.0179 (2) | |
H6 | 0.7765 | 0.3737 | 0.7664 | 0.021* | |
C7 | 0.83367 (4) | 0.6558 (2) | 0.83656 (8) | 0.0149 (2) | |
C8 | 0.86360 (4) | 0.9585 (3) | 0.76012 (8) | 0.0165 (2) | |
H8A | 0.8373 | 1.1067 | 0.7324 | 0.020* | |
H8B | 0.8778 | 0.9319 | 0.7210 | 0.020* | |
C9 | 0.90369 (4) | 1.0563 (2) | 0.85134 (7) | 0.0143 (2) | |
C10 | 0.94405 (4) | 1.2302 (2) | 0.88400 (8) | 0.0150 (2) | |
C11 | 0.96897 (5) | 1.3874 (3) | 0.84262 (8) | 0.0169 (2) | |
H11A | 0.9688 | 1.5955 | 0.8534 | 0.020* | |
H11B | 1.0041 | 1.3240 | 0.8707 | 0.020* | |
C12 | 0.80931 (5) | 0.4640 (3) | 1.05530 (9) | 0.0230 (3) | |
H12A | 0.8385 | 0.5260 | 1.1123 | 0.034* | |
H12B | 0.8048 | 0.2571 | 1.0572 | 0.034* | |
H12C | 0.7795 | 0.5641 | 1.0463 | 0.034* | |
O1W | 0.9355 (2) | 0.7877 (15) | 0.6637 (2) | 0.0254 (9) | 0.571 (18) |
H1W | 0.9358 | 0.8326 | 0.6165 | 0.038* | 0.571 (18) |
H2W | 0.9446 | 0.9123 | 0.7046 | 0.038* | 0.571 (18) |
O11W | 0.9505 (3) | 0.8795 (16) | 0.6793 (4) | 0.0253 (12) | 0.429 (18) |
H11W | 0.9601 | 0.8401 | 0.6427 | 0.038* | 0.429 (18) |
H22W | 0.9414 | 1.0419 | 0.6835 | 0.038* | 0.429 (18) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0238 (4) | 0.0198 (4) | 0.0140 (4) | −0.0053 (3) | 0.0124 (4) | −0.0027 (3) |
O2 | 0.0214 (4) | 0.0208 (4) | 0.0134 (4) | −0.0064 (3) | 0.0114 (3) | −0.0014 (3) |
O3 | 0.0400 (6) | 0.0457 (7) | 0.0155 (5) | −0.0202 (5) | 0.0186 (4) | −0.0069 (4) |
N1 | 0.0208 (5) | 0.0200 (5) | 0.0152 (5) | −0.0052 (4) | 0.0122 (4) | −0.0002 (4) |
C1 | 0.0179 (5) | 0.0160 (5) | 0.0130 (5) | −0.0003 (4) | 0.0097 (4) | 0.0003 (4) |
C2 | 0.0160 (5) | 0.0157 (5) | 0.0132 (5) | −0.0007 (4) | 0.0087 (4) | 0.0001 (4) |
C3 | 0.0187 (5) | 0.0198 (5) | 0.0136 (5) | −0.0012 (4) | 0.0095 (4) | 0.0005 (4) |
C4 | 0.0175 (5) | 0.0205 (5) | 0.0161 (5) | 0.0001 (4) | 0.0102 (4) | 0.0026 (4) |
C5 | 0.0169 (5) | 0.0203 (6) | 0.0202 (6) | −0.0026 (4) | 0.0102 (5) | 0.0007 (4) |
C6 | 0.0174 (5) | 0.0195 (5) | 0.0165 (5) | −0.0023 (4) | 0.0085 (4) | −0.0011 (4) |
C7 | 0.0167 (5) | 0.0167 (5) | 0.0130 (5) | 0.0003 (4) | 0.0089 (4) | 0.0007 (4) |
C8 | 0.0196 (5) | 0.0188 (5) | 0.0134 (5) | −0.0032 (4) | 0.0101 (4) | −0.0004 (4) |
C9 | 0.0175 (5) | 0.0150 (5) | 0.0121 (5) | −0.0005 (4) | 0.0089 (4) | 0.0000 (4) |
C10 | 0.0194 (5) | 0.0156 (5) | 0.0127 (5) | −0.0002 (4) | 0.0101 (4) | 0.0003 (4) |
C11 | 0.0211 (6) | 0.0184 (5) | 0.0149 (5) | −0.0025 (4) | 0.0119 (5) | 0.0001 (4) |
C12 | 0.0234 (6) | 0.0302 (7) | 0.0194 (6) | −0.0034 (5) | 0.0139 (5) | 0.0036 (5) |
O1W | 0.0385 (17) | 0.0249 (19) | 0.0168 (10) | −0.0005 (14) | 0.0171 (11) | −0.0012 (10) |
O11W | 0.048 (3) | 0.0181 (19) | 0.0182 (15) | −0.001 (2) | 0.0228 (17) | −0.0012 (14) |
O1—C7 | 1.3779 (14) | C8—C9 | 1.4940 (16) |
O1—C8 | 1.4493 (14) | C8—H8A | 0.9900 |
O2—C10 | 1.3613 (14) | C8—H8B | 0.9900 |
O2—N1 | 1.4130 (12) | C9—C10 | 1.3544 (16) |
O3—C11 | 1.4129 (15) | C10—C11 | 1.4948 (16) |
O3—H3 | 0.8400 | C11—H11A | 0.9900 |
N1—C1 | 1.3130 (15) | C11—H11B | 0.9900 |
C1—C9 | 1.4208 (15) | C12—H12A | 0.9800 |
C1—C2 | 1.4536 (16) | C12—H12B | 0.9800 |
C2—C3 | 1.3993 (16) | C12—H12C | 0.9800 |
C2—C7 | 1.4002 (16) | O1W—H1W | 0.8472 |
C3—C4 | 1.3878 (16) | O1W—H2W | 0.8449 |
C3—H3A | 0.9500 | O1W—H11W | 1.0329 |
C4—C5 | 1.4036 (18) | O1W—H22W | 1.2232 |
C4—C12 | 1.5087 (16) | O11W—H1W | 0.9623 |
C5—C6 | 1.3895 (17) | O11W—H2W | 0.5751 |
C5—H5 | 0.9500 | O11W—H11W | 0.8498 |
C6—C7 | 1.3917 (16) | O11W—H22W | 0.8256 |
C6—H6 | 0.9500 | ||
C7—O1—C8 | 118.43 (9) | C9—C8—H8B | 109.5 |
C10—O2—N1 | 108.69 (9) | H8A—C8—H8B | 108.1 |
C11—O3—H3 | 109.5 | C10—C9—C1 | 104.13 (10) |
C1—N1—O2 | 105.00 (9) | C10—C9—C8 | 135.85 (10) |
N1—C1—C9 | 112.42 (10) | C1—C9—C8 | 119.81 (10) |
N1—C1—C2 | 127.17 (10) | C9—C10—O2 | 109.75 (10) |
C9—C1—C2 | 120.39 (10) | C9—C10—C11 | 134.25 (11) |
C3—C2—C7 | 119.53 (11) | O2—C10—C11 | 116.00 (10) |
C3—C2—C1 | 124.62 (11) | O3—C11—C10 | 109.46 (10) |
C7—C2—C1 | 115.83 (10) | O3—C11—H11A | 109.8 |
C4—C3—C2 | 121.48 (11) | C10—C11—H11A | 109.8 |
C4—C3—H3A | 119.3 | O3—C11—H11B | 109.8 |
C2—C3—H3A | 119.3 | C10—C11—H11B | 109.8 |
C3—C4—C5 | 117.95 (11) | H11A—C11—H11B | 108.2 |
C3—C4—C12 | 120.52 (11) | C4—C12—H12A | 109.5 |
C5—C4—C12 | 121.53 (11) | C4—C12—H12B | 109.5 |
C6—C5—C4 | 121.50 (11) | H12A—C12—H12B | 109.5 |
C6—C5—H5 | 119.2 | C4—C12—H12C | 109.5 |
C4—C5—H5 | 119.2 | H12A—C12—H12C | 109.5 |
C5—C6—C7 | 119.79 (11) | H12B—C12—H12C | 109.5 |
C5—C6—H6 | 120.1 | H1W—O1W—H2W | 118.1 |
C7—C6—H6 | 120.1 | H2W—O1W—H11W | 98.2 |
O1—C7—C6 | 116.95 (10) | H1W—O1W—H22W | 87.5 |
O1—C7—C2 | 123.19 (10) | H11W—O1W—H22W | 80.7 |
C6—C7—C2 | 119.74 (10) | H1W—O11W—H2W | 140.2 |
O1—C8—C9 | 110.80 (9) | H2W—O11W—H11W | 176.6 |
O1—C8—H8A | 109.5 | H1W—O11W—H22W | 108.9 |
C9—C8—H8A | 109.5 | H2W—O11W—H22W | 55.3 |
O1—C8—H8B | 109.5 | H11W—O11W—H22W | 122.3 |
C10—O2—N1—C1 | −0.50 (12) | C1—C2—C7—O1 | 2.99 (17) |
O2—N1—C1—C9 | 0.41 (13) | C3—C2—C7—C6 | 0.24 (17) |
O2—N1—C1—C2 | 178.83 (11) | C1—C2—C7—C6 | 178.85 (11) |
N1—C1—C2—C3 | 8.7 (2) | C7—O1—C8—C9 | 40.06 (14) |
C9—C1—C2—C3 | −173.03 (11) | N1—C1—C9—C10 | −0.17 (14) |
N1—C1—C2—C7 | −169.87 (12) | C2—C1—C9—C10 | −178.71 (10) |
C9—C1—C2—C7 | 8.44 (16) | N1—C1—C9—C8 | −175.75 (11) |
C7—C2—C3—C4 | 0.22 (18) | C2—C1—C9—C8 | 5.71 (17) |
C1—C2—C3—C4 | −178.26 (11) | O1—C8—C9—C10 | 157.34 (13) |
C2—C3—C4—C5 | −0.63 (18) | O1—C8—C9—C1 | −28.81 (15) |
C2—C3—C4—C12 | 178.83 (12) | C1—C9—C10—O2 | −0.16 (13) |
C3—C4—C5—C6 | 0.61 (18) | C8—C9—C10—O2 | 174.33 (13) |
C12—C4—C5—C6 | −178.85 (12) | C1—C9—C10—C11 | 179.91 (13) |
C4—C5—C6—C7 | −0.17 (19) | C8—C9—C10—C11 | −5.6 (2) |
C8—O1—C7—C6 | 154.93 (11) | N1—O2—C10—C9 | 0.41 (13) |
C8—O1—C7—C2 | −29.11 (16) | N1—O2—C10—C11 | −179.65 (10) |
C5—C6—C7—O1 | 175.85 (11) | C9—C10—C11—O3 | −0.52 (19) |
C5—C6—C7—C2 | −0.26 (18) | O2—C10—C11—O3 | 179.56 (10) |
C3—C2—C7—O1 | −175.62 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H2W···O3 | 0.84 | 2.12 | 2.889 (7) | 152 |
O11W—H22W···O3 | 0.83 | 1.75 | 2.502 (6) | 151 |
O3—H3···O1Wi | 0.84 | 1.71 | 2.527 (6) | 164 |
O3—H3···O11Wi | 0.84 | 2.06 | 2.882 (8) | 166 |
O1W—H1W···N1ii | 0.85 | 2.02 | 2.866 (3) | 175 |
O11W—H11W···N1ii | 0.85 | 2.16 | 2.870 (3) | 140 |
C8—H8B···O1W | 0.99 | 2.56 | 3.513 (3) | 162 |
Symmetry codes: (i) x, y+1, z; (ii) x, −y+2, z−1/2. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | C11H9NO3 | C12H11NO3·H2O |
Mr | 203.19 | 235.23 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, C2/c |
Temperature (K) | 100 | 100 |
a, b, c (Å) | 9.6423 (2), 8.3406 (1), 13.1461 (2) | 31.2492 (5), 4.6714 (1), 17.3083 (4) |
β (°) | 121.218 (1) | 121.030 (2) |
V (Å3) | 904.16 (3) | 2165.06 (8) |
Z | 4 | 8 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.11 | 0.11 |
Crystal size (mm) | 0.38 × 0.22 × 0.06 | 0.38 × 0.14 × 0.09 |
Data collection | ||
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.971, 0.993 | 0.982, 0.990 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14247, 3743, 2956 | 25453, 3852, 3028 |
Rint | 0.030 | 0.040 |
(sin θ/λ)max (Å−1) | 0.791 | 0.757 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.120, 1.04 | 0.051, 0.133, 1.02 |
No. of reflections | 3743 | 3852 |
No. of parameters | 136 | 166 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.58, −0.28 | 0.42, −0.35 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···N1i | 0.86 | 1.98 | 2.8367 (11) | 173 |
C11—H11A···O3ii | 0.99 | 2.48 | 3.2970 (12) | 139 |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) −x+1, y−1/2, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H2W···O3 | 0.84 | 2.12 | 2.889 (7) | 152 |
O11W—H22W···O3 | 0.83 | 1.75 | 2.502 (6) | 151 |
O3—H3···O1Wi | 0.84 | 1.71 | 2.527 (6) | 164 |
O3—H3···O11Wi | 0.84 | 2.06 | 2.882 (8) | 166 |
O1W—H1W···N1ii | 0.85 | 2.02 | 2.866 (3) | 175 |
O11W—H11W···N1ii | 0.85 | 2.16 | 2.870 (3) | 140 |
C8—H8B···O1W | 0.99 | 2.56 | 3.513 (3) | 162 |
Symmetry codes: (i) x, y+1, z; (ii) x, −y+2, z−1/2. |
Isoxazole derivatives are found to inhibit HIV-1 infection in human CD4+ lymphocytic T cells (Loh et al., 2010). They also possess antiviral (Lee & Kim, 2002) and anticonvulsant (Eddington et al., 2002) properties. The title compounds, namely (4H-chromeno[4,3-c]isoxazol-3-yl)methanol, (I), and (8-methyl-4H-chromeno[4,3-c]isoxazol-3-yl)methanol monohydrate, (II), are isoxazole derivatives which differ only by a methyl substituent in the benzene ring of the chroman. Although (I) and (II) differ only slightly in their hydrophobicity owing to the simple addition of a methyl group in (II), the crystal structures show striking differences in their molecular interaction patterns. We have recently reported the crystal structures of 9-fluoro-4H-chromeno[4,3-c]isoxazol-3-yl)methanol and its 9-chloro analogue, in which drastic differences in the molecular interaction patterns effected through the simple replacement of F by Cl were described (Rajalakshmi et al., 2012).
Both (I) and (II) crystallize in the monoclinic system in the space groups P21/c and C2/c, respectively. The addition of the hydrophobic methyl substituent has not caused a change in the point-group symmetry 2/m of the crystal structure but has substantially altered the intermolecular interactions in (II), as evidenced by an examination of its crystal packing. The presence of the water molecule at the interface between adjacent hydrophobic zones appears crucial for the stabilization of the crystal structure. However, there are no significant changes in the molecular conformation and the point-group symmetry of the structure remains unaltered. Crystals of (II) have water molecules incorporated in the structure and, in addition, as an unrelated but interesting observation, the ratio between the shortest and longest cell dimensions is 1.6 in (I) and 6.7 in (II), with the β angles being almost equal. The role of the water molecule in the hydrogen bonding and the differences it causes in determining supramolecular motifs in the crystal packing of (I) and (II) are discussed in the present paper.
The pyran ring adopts a skew-boat conformation with puckering parameters Q = 0.3992 (11) Å, θ = 114.32 (16)° and ϕ = 143.50 (17)° for (I), and Q = 0.3193 (13) Å, θ = 117.9 (3)° and ϕ = 144.4 (3)° for (II) (Cremer & Pople, 1975). The difference in the magnitude of the puckering is also evidenced by atoms C8 and O1 of the pyran ring deviating from the mean plane defined by the remaining atoms by 0.364 (2) and -0.229 (2) Å, respectively, for (I), and by -0.286 (2) and 0.20 (2)Å, respectively, for (II). The orientation of hydroxy atom O3 with respect to isoxazole atom O2 is described by the O2—C10—C11—O3 torsion angles of 170.65 (8)° for (I) and 179.6 (1)° for (II), indicating an antiperiplanar conformation. The respective conformation and deviations from the ideal value of 180° in (I) and (II) may be attributed to the significant difference in the mode of participation of atom O3 in hydrogen bonding, i.e. O3 participates in an O—H···N hydrogen bond in (I) (Table 1) and in O—H···N and O—H···O hydrogen bonds in (II).
In (II), the water molecule exhibits disorder, which was modelled using two sets of atomic sites with refined occupancies of 0.57 (2) and 0.43 (2) (Fig. 2). The O1W···O11W separation between the major and minor disordered components is 0.5870 Å, and the angle between the planes formed by the respective components is 37.37°. A nonbonded interaction involving the minor disordered component [O11W···O11W(-x + 2, y, -z + 3/2) = 2.787 (1) Å] across a twofold rotation axis is observed. The hydrogen-bonding environments of both O1W and O11W are essentially identical, with the O—H···N hydrogen bond deviating significantly from linearity. C—H···O hydrogen bonds involving both O1W and O11W are also present (Table 2). The C8···O11W and H8A···O11W distances involving the minor component are noticeably longer [3.66 (1) and 2.74 (1) Å, respectively] than those of the major component [3.513 (7) and 2.576 (7) Å, respectively]. This type of disorder in the water molecule has a significant impact on the supramolecular architecture of (II). The major component O1W is involved in O—H···O, C—H···O and O—H···N hydrogen bonds and forms supramolecular R12(8) and R66(20) motifs (Bernstein et al., 1995) extending along c axis.
The hydrogen-bonded networks of (I) and (II) are formed by a combination of O—H···N, O—H···O and C—H···O hydrogen-bonded supramolecular motifs. In (I), an O3—H3···N1i [symmetry code: (i) x, -y + 1/2, z + 1/2] hydrogen-bonded C(6) motif links 21 screw-related molecules into a linear chain parallel to the [001] direction (Fig. 3). Each linear chain is linked to its adjacent antiparallel pair through C11—H11A···O3ii [symmetry code: (ii) -x + 1, y - 1/2, -z + 3/2] hydrogen-bonded C(3) motifs. The C(3) and C(6) motifs along the b and c axes, respectively, are the fundamental linking units in the formation of a supramolecular two-dimensional corrugated sheet parallel to the [011] direction characterized by R44(16) and R44(36) motifs (Fig. 4). In addition, the C(6) chain and its inversion-related pair are connected through π–π interactions between the isoxazole rings, with a ring-centroid separation of 3.7063 (6) Å, an interplanar spacing of ca 3.60 Å and a ring offset of ca 0.76 Å. The absence of O—H···O hydrogen bonds in the molecular interaction pattern, in spite of there being enough scope due to the presence of three O atoms in the molecule, is significant in the context of the prediction of intermolecular interaction patterns. While hydroxy atom O3 participates as both an acceptor and a donor in hydrogen bonds, atom O1 is involved in a nonbonded O1···O1(-x, -y + 1, -z + 1) contact of 3.119 (1) Å.
In (II), the presence of a water molecule in the structure seems to be crucial for the stabilization of the molecular structure, as evidenced from its participation in four hydrogen bonds. The environment surrounding water atom O1W is far from being tetrahedral and seems similar to that of over-coordinated oxygen (OCO), with O1W participating in two `acceptor bonds' and two `donor bonds' (Fig. 5) (Markovitch & Agmon, 2008). Atom O3 participates in two O—H···O hydrogen bonds, as both a donor [O3—H3···O1Wi; symmetry code: (i) x, y + 1, z] and as an acceptor (O1W—H2W···O3). The hydroxy `acceptor bonds', together with an intramolecular C8—H8B···O1W hydrogen bond, lead to the formation of an R12 (8) motif. Water atom O1W is shared by O1W—H1W···N1ii [symmetry code: (ii) x, -y + 2, z - 1/2] and O1W—H2W···O3 bonds, leading to C12(8) one-dimensional chains along the c axis (Fig. 6). Each such chain is linked to its adjacent parallel pair through an O3—H3···O1Wi hydrogen bond between water atom O1W and hydroxy atom O3, leading to the formation of a two-dimensional supramolecular sheet parallel to the (011) plane characterized by an R66 (20) motif (Fig. 7). In addition, two nonbonded interactions, viz. O2···O2(-x, -1 - y, -z) of 2.919 (1) Å and O2···O2(-x + 2, -y + 2, -z + 2) of 3.087 (1) Å, are observed. A weak π–π interaction exists between the isoxazole ring at (x, y, z) and the benzene ring at (x, y + 1, z), corresponding to a ring-centroid separation of 3.8007 (10) Å, an interplanar spacing of ca 3.56 Å and a ring offset of ca 1.74 Å. These interactions generate π-stacked chains running parallel to the [010] direction (Fig. 8).
In both (I) and (II), atoms O1 and O2 do not participate in intermolecular interactions, except for an O1···O1 nonbonded contact in (I) and an O2···O2 contact in (II). In (II), it is pertinent to note that all the hydrogen bonds are linked through water, and this possibly indicates the necessity for it to be present in the structure. The present work is an example of how the simple addition of a methyl substituent to the main molecular scaffold, while retaining the point-group symmetry, may pave the way for a variety of supramolecular motifs, transforming the structure type and consequently altering the complexity of the intermolecular interaction patterns.