Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807034381/wn2171sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807034381/wn2171Isup2.hkl |
CCDC reference: 659090
Key indicators
- Single-crystal X-ray study
- T = 120 K
- Mean (C-C) = 0.002 Å
- R factor = 0.034
- wR factor = 0.093
- Data-to-parameter ratio = 16.5
checkCIF/PLATON results
No syntax errors found
Alert level C ABSTM02_ALERT_3_C The ratio of expected to reported Tmax/Tmin(RR') is < 0.90 Tmin and Tmax reported: 0.799 1.000 Tmin(prime) and Tmax expected: 0.917 0.945 RR(prime) = 0.823 Please check that your absorption correction is appropriate. PLAT061_ALERT_3_C Tmax/Tmin Range Test RR' too Large ............. 0.82 PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.94
Alert level G ABSTM02_ALERT_3_G When printed, the submitted absorption T values will be replaced by the scaled T values. Since the ratio of scaled T's is identical to the ratio of reported T values, the scaling does not imply a change to the absorption corrections used in the study. Ratio of Tmax expected/reported 0.945 Tmax scaled 0.945 Tmin scaled 0.755
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
For a detailed account of the molecular and supramolecular architectures of aromatic sulfonates, see Manivannan et al. (2005) and references cited therein.
For related literature, see: Alford et al. (1991); Desiraju & Steiner (1999); Jiang et al. (1990); Narayanan & Krakow (1983); Spungin et al. (1992); Tharakan et al. (1992); Yachi et al. (1989).
Benzenesulfonyl chloride (10 mmol), dissolved in acetone (10 ml), was added dropwise to 4-nitrophenol (10 mmol) in aqueous NaOH (8 ml, 5%) with constant stirring. The precipitate (6.5 mmol, yield 65%) was filtered and recrystallized from an acetone/ethanol (1:10) mixture.
All H atoms were located in difference maps and their positions and isotropic displacement parameters freely refined. The range of refined C—H distances was 0.91 (2) - 0.99 (2) Å.
Aromatic sulfonates are used in monitoring the merging of lipids (Yachi et al., 1989) and in many other fields (Spungin et al., 1992, Tharakan et al.,1992, Alford et al., 1991, Jiang et al., 1990, Narayanan & Krakow, 1983). An X-ray study of the title compound was undertaken in order to determine its crystal and molecular structure owing to the biological importance of its analogues. The molecular structure of the title compound, C12H9NO5S, is shown in Fig. 1 with selected torsion angles provided in Table 1. The S—C, S—O and S=O bond lengths are all comparable to those found in related structures previously reported by our research group (Manivannan et al. 2005 & references cited therein).
A Newman projection along the O10—S1 bond is shown in Fig. 2. Using C11 as a reference point, the orientations of the two sulfonyl oxygen atoms (O8 and O9) and the phenyl carbon (C2) have been deduced from the corresponding torsion angles (C11–O10–S1–O8/O9/C2). Helical nomenclature is followed in assigning + or -synclinal and -antiperiplanar conformations. The C2–S1–O10–C11 torsion angle of 75.2 (1)° corresponds to +synclinal conformation. The dihedral angle between the mean planes of the phenyl and 4-nitrophenyl rings of 53.91 (4)° shows that the two rings are not coplanar. This is similar to the situation reported by us for other aromatic sulfonates (Manivannan et al. 2005 & references cited therein).
The crystal structure of the title compound is stabilized by the presence of weak intermolecular C—H···O (Fig. 3) (Desiraju et al., 1999) (Table 2) and π···π interactions. The symmetry related phenyl rings (C2—C7) [2 - x, 1 - y, -z] interact in a face to face manner with a separation of 3.664 Å.
For a detailed account of the molecular and supramolecular architectures of aromatic sulfonates, see Manivannan et al. (2005) and references cited therein.
For related literature, see: Alford et al. (1991); Desiraju & Steiner (1999); Jiang et al. (1990); Narayanan & Krakow (1983); Spungin et al. (1992); Tharakan et al. (1992); Yachi et al. (1989).
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 2003); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97.
C12H9NO5S | F(000) = 576 |
Mr = 279.26 | Dx = 1.529 Mg m−3 |
Monoclinic, P21/c | Melting point = 340–342 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 10.015 (3) Å | Cell parameters from 8716 reflections |
b = 10.852 (4) Å | θ = 2.6–30.0° |
c = 11.396 (4) Å | µ = 0.28 mm−1 |
β = 101.651 (8)° | T = 120 K |
V = 1213.0 (7) Å3 | Block, colourless |
Z = 4 | 0.30 × 0.24 × 0.20 mm |
Bruker SMART CCD 1K area-detector diffractometer | 3437 independent reflections |
Radiation source: fine-focus sealed tube | 2586 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
Detector resolution: 8 pixels mm-1 | θmax = 30.3°, θmin = 2.1° |
ω scans | h = −14→13 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1998) | k = −15→15 |
Tmin = 0.799, Tmax = 1.000 | l = −15→15 |
23602 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.093 | All H-atom parameters refined |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0403P)2 + 0.5272P] where P = (Fo2 + 2Fc2)/3 |
3437 reflections | (Δ/σ)max = 0.001 |
208 parameters | Δρmax = 0.36 e Å−3 |
0 restraints | Δρmin = −0.38 e Å−3 |
C12H9NO5S | V = 1213.0 (7) Å3 |
Mr = 279.26 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.015 (3) Å | µ = 0.28 mm−1 |
b = 10.852 (4) Å | T = 120 K |
c = 11.396 (4) Å | 0.30 × 0.24 × 0.20 mm |
β = 101.651 (8)° |
Bruker SMART CCD 1K area-detector diffractometer | 3437 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1998) | 2586 reflections with I > 2σ(I) |
Tmin = 0.799, Tmax = 1.000 | Rint = 0.036 |
23602 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.093 | All H-atom parameters refined |
S = 1.04 | Δρmax = 0.36 e Å−3 |
3437 reflections | Δρmin = −0.38 e Å−3 |
208 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.88009 (4) | 0.64514 (3) | 0.20115 (3) | 0.02644 (10) | |
C2 | 0.84763 (14) | 0.53463 (13) | 0.08707 (13) | 0.0241 (3) | |
C3 | 0.77611 (15) | 0.56938 (15) | −0.02609 (13) | 0.0270 (3) | |
C4 | 0.75429 (15) | 0.48225 (16) | −0.11640 (14) | 0.0298 (3) | |
C5 | 0.80280 (15) | 0.36285 (15) | −0.09411 (14) | 0.0302 (3) | |
C6 | 0.87286 (16) | 0.32943 (15) | 0.01874 (15) | 0.0312 (3) | |
C7 | 0.89596 (15) | 0.41514 (14) | 0.11100 (14) | 0.0278 (3) | |
O8 | 0.98137 (11) | 0.59973 (11) | 0.29756 (9) | 0.0316 (2) | |
O9 | 0.89369 (13) | 0.76432 (10) | 0.15216 (10) | 0.0361 (3) | |
O10 | 0.73797 (11) | 0.65581 (10) | 0.24513 (9) | 0.0296 (2) | |
C11 | 0.70056 (15) | 0.56091 (13) | 0.31653 (13) | 0.0248 (3) | |
C12 | 0.75723 (16) | 0.55939 (14) | 0.43750 (13) | 0.0270 (3) | |
C13 | 0.71255 (15) | 0.47233 (14) | 0.50931 (13) | 0.0273 (3) | |
C14 | 0.61342 (14) | 0.38957 (13) | 0.45633 (13) | 0.0250 (3) | |
C15 | 0.55842 (15) | 0.38921 (15) | 0.33496 (14) | 0.0278 (3) | |
C16 | 0.60276 (15) | 0.47702 (15) | 0.26344 (13) | 0.0285 (3) | |
N17 | 0.56559 (13) | 0.29760 (13) | 0.53293 (12) | 0.0313 (3) | |
O18 | 0.59839 (14) | 0.31087 (12) | 0.64123 (11) | 0.0432 (3) | |
O19 | 0.49469 (14) | 0.21269 (13) | 0.48477 (12) | 0.0470 (3) | |
H3 | 0.7429 (19) | 0.6529 (17) | −0.0389 (16) | 0.034 (5)* | |
H4 | 0.7063 (19) | 0.5073 (18) | −0.1976 (17) | 0.035 (5)* | |
H5 | 0.7882 (19) | 0.3017 (17) | −0.1583 (16) | 0.035 (5)* | |
H6 | 0.910 (2) | 0.2527 (19) | 0.0343 (17) | 0.040 (5)* | |
H7 | 0.9479 (19) | 0.3944 (18) | 0.1900 (17) | 0.037 (5)* | |
H12 | 0.8242 (18) | 0.6151 (17) | 0.4690 (16) | 0.032 (5)* | |
H13 | 0.7501 (19) | 0.4703 (17) | 0.5940 (17) | 0.037 (5)* | |
H15 | 0.4911 (19) | 0.3330 (17) | 0.3031 (16) | 0.033 (5)* | |
H16 | 0.5667 (19) | 0.4819 (17) | 0.1794 (17) | 0.036 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.03116 (19) | 0.02337 (18) | 0.02263 (18) | −0.00350 (14) | 0.00035 (13) | 0.00245 (14) |
C2 | 0.0232 (6) | 0.0247 (7) | 0.0236 (7) | −0.0038 (5) | 0.0031 (5) | 0.0018 (5) |
C3 | 0.0258 (7) | 0.0282 (8) | 0.0256 (7) | 0.0013 (6) | 0.0020 (5) | 0.0038 (6) |
C4 | 0.0238 (7) | 0.0379 (9) | 0.0262 (7) | −0.0013 (6) | 0.0014 (6) | 0.0000 (6) |
C5 | 0.0244 (7) | 0.0327 (8) | 0.0332 (8) | −0.0067 (6) | 0.0053 (6) | −0.0058 (7) |
C6 | 0.0285 (7) | 0.0246 (8) | 0.0395 (9) | −0.0027 (6) | 0.0047 (6) | 0.0006 (6) |
C7 | 0.0261 (7) | 0.0270 (8) | 0.0287 (7) | −0.0019 (6) | 0.0015 (6) | 0.0054 (6) |
O8 | 0.0310 (6) | 0.0351 (6) | 0.0252 (5) | −0.0033 (5) | −0.0024 (4) | 0.0015 (4) |
O9 | 0.0514 (7) | 0.0252 (6) | 0.0289 (6) | −0.0094 (5) | 0.0014 (5) | 0.0040 (4) |
O10 | 0.0357 (6) | 0.0248 (5) | 0.0275 (5) | 0.0053 (4) | 0.0044 (4) | 0.0047 (4) |
C11 | 0.0287 (7) | 0.0218 (7) | 0.0239 (7) | 0.0052 (5) | 0.0052 (5) | 0.0003 (5) |
C12 | 0.0315 (7) | 0.0238 (7) | 0.0243 (7) | −0.0010 (6) | 0.0023 (6) | −0.0053 (6) |
C13 | 0.0309 (7) | 0.0298 (8) | 0.0202 (7) | 0.0025 (6) | 0.0028 (6) | −0.0033 (6) |
C14 | 0.0251 (7) | 0.0245 (7) | 0.0263 (7) | 0.0052 (5) | 0.0073 (5) | −0.0002 (5) |
C15 | 0.0237 (7) | 0.0301 (8) | 0.0283 (7) | 0.0002 (6) | 0.0024 (6) | −0.0052 (6) |
C16 | 0.0274 (7) | 0.0343 (8) | 0.0217 (7) | 0.0029 (6) | 0.0001 (6) | −0.0024 (6) |
N17 | 0.0275 (6) | 0.0331 (7) | 0.0346 (7) | 0.0027 (5) | 0.0093 (5) | 0.0035 (6) |
O18 | 0.0566 (8) | 0.0446 (7) | 0.0301 (6) | −0.0018 (6) | 0.0129 (6) | 0.0064 (5) |
O19 | 0.0420 (7) | 0.0467 (8) | 0.0516 (8) | −0.0171 (6) | 0.0079 (6) | 0.0026 (6) |
S1—O8 | 1.4243 (11) | O10—C11 | 1.4094 (18) |
S1—O9 | 1.4262 (12) | C11—C12 | 1.381 (2) |
S1—O10 | 1.6057 (12) | C11—C16 | 1.384 (2) |
S1—C2 | 1.7503 (15) | C12—C13 | 1.382 (2) |
C2—C7 | 1.392 (2) | C12—H12 | 0.920 (19) |
C2—C3 | 1.395 (2) | C13—C14 | 1.384 (2) |
C3—C4 | 1.382 (2) | C13—H13 | 0.962 (18) |
C3—H3 | 0.967 (19) | C14—C15 | 1.382 (2) |
C4—C5 | 1.389 (2) | C14—N17 | 1.469 (2) |
C4—H4 | 0.991 (19) | C15—C16 | 1.384 (2) |
C5—C6 | 1.383 (2) | C15—H15 | 0.927 (19) |
C5—H5 | 0.976 (19) | C16—H16 | 0.954 (19) |
C6—C7 | 1.388 (2) | N17—O18 | 1.2198 (18) |
C6—H6 | 0.91 (2) | N17—O19 | 1.2236 (19) |
C7—H7 | 0.971 (19) | ||
O8—S1—O9 | 120.42 (7) | C2—C7—H7 | 119.9 (11) |
O8—S1—O10 | 108.79 (7) | C11—O10—S1 | 118.90 (9) |
O9—S1—O10 | 102.56 (7) | C12—C11—C16 | 122.72 (14) |
O8—S1—C2 | 109.42 (7) | C12—C11—O10 | 118.79 (13) |
O9—S1—C2 | 110.41 (7) | C16—C11—O10 | 118.39 (13) |
O10—S1—C2 | 103.76 (6) | C11—C12—C13 | 118.84 (14) |
C7—C2—C3 | 121.77 (14) | C11—C12—H12 | 120.1 (11) |
C7—C2—S1 | 119.19 (11) | C13—C12—H12 | 121.0 (11) |
C3—C2—S1 | 119.02 (12) | C12—C13—C14 | 118.35 (14) |
C4—C3—C2 | 118.55 (14) | C12—C13—H13 | 120.1 (11) |
C4—C3—H3 | 122.1 (11) | C14—C13—H13 | 121.6 (11) |
C2—C3—H3 | 119.4 (11) | C15—C14—C13 | 122.99 (14) |
C3—C4—C5 | 120.34 (15) | C15—C14—N17 | 118.77 (14) |
C3—C4—H4 | 118.8 (11) | C13—C14—N17 | 118.24 (13) |
C5—C4—H4 | 120.9 (11) | C14—C15—C16 | 118.50 (14) |
C6—C5—C4 | 120.51 (15) | C14—C15—H15 | 120.4 (11) |
C6—C5—H5 | 119.3 (11) | C16—C15—H15 | 121.1 (11) |
C4—C5—H5 | 120.2 (11) | C11—C16—C15 | 118.58 (14) |
C5—C6—C7 | 120.28 (15) | C11—C16—H16 | 119.6 (12) |
C5—C6—H6 | 122.0 (12) | C15—C16—H16 | 121.8 (12) |
C7—C6—H6 | 117.6 (12) | O18—N17—O19 | 123.79 (14) |
C6—C7—C2 | 118.55 (14) | O18—N17—C14 | 117.88 (14) |
C6—C7—H7 | 121.5 (11) | O19—N17—C14 | 118.33 (13) |
O8—S1—C2—C7 | 13.37 (14) | S1—O10—C11—C12 | 79.98 (15) |
O9—S1—C2—C7 | 148.12 (12) | S1—O10—C11—C16 | −103.52 (14) |
O10—S1—C2—C7 | −102.61 (12) | C16—C11—C12—C13 | −1.5 (2) |
O8—S1—C2—C3 | −165.46 (11) | O10—C11—C12—C13 | 174.88 (13) |
O9—S1—C2—C3 | −30.71 (14) | C11—C12—C13—C14 | 0.5 (2) |
O10—S1—C2—C3 | 78.56 (12) | C12—C13—C14—C15 | 0.8 (2) |
C7—C2—C3—C4 | −0.6 (2) | C12—C13—C14—N17 | −179.67 (13) |
S1—C2—C3—C4 | 178.25 (11) | C13—C14—C15—C16 | −1.2 (2) |
C2—C3—C4—C5 | 0.1 (2) | N17—C14—C15—C16 | 179.26 (13) |
C3—C4—C5—C6 | 0.3 (2) | C12—C11—C16—C15 | 1.0 (2) |
C4—C5—C6—C7 | −0.2 (2) | O10—C11—C16—C15 | −175.31 (13) |
C5—C6—C7—C2 | −0.2 (2) | C14—C15—C16—C11 | 0.3 (2) |
C3—C2—C7—C6 | 0.6 (2) | C15—C14—N17—O18 | −168.62 (14) |
S1—C2—C7—C6 | −178.16 (11) | C13—C14—N17—O18 | 11.8 (2) |
O8—S1—O10—C11 | −41.26 (12) | C15—C14—N17—O19 | 10.9 (2) |
O9—S1—O10—C11 | −169.86 (10) | C13—C14—N17—O19 | −168.63 (14) |
C2—S1—O10—C11 | 75.15 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H7···O8 | 0.971 (19) | 2.533 (19) | 2.921 (2) | 103.8 (13) |
C7—H7···O9i | 0.971 (19) | 2.567 (19) | 3.479 (2) | 156.5 (15) |
C12—H12···O9ii | 0.920 (19) | 2.442 (19) | 3.188 (2) | 138.2 (14) |
Symmetry codes: (i) −x+2, y−1/2, −z+1/2; (ii) x, −y+3/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H9NO5S |
Mr | 279.26 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 120 |
a, b, c (Å) | 10.015 (3), 10.852 (4), 11.396 (4) |
β (°) | 101.651 (8) |
V (Å3) | 1213.0 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.30 × 0.24 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART CCD 1K area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1998) |
Tmin, Tmax | 0.799, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 23602, 3437, 2586 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.710 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.093, 1.04 |
No. of reflections | 3437 |
No. of parameters | 208 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.36, −0.38 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 2003), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2003), SHELXL97.
O8—S1—O10—C11 | −41.26 (12) | C2—S1—O10—C11 | 75.15 (11) |
O9—S1—O10—C11 | −169.86 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H7···O9i | 0.971 (19) | 2.567 (19) | 3.479 (2) | 156.5 (15) |
C12—H12···O9ii | 0.920 (19) | 2.442 (19) | 3.188 (2) | 138.2 (14) |
Symmetry codes: (i) −x+2, y−1/2, −z+1/2; (ii) x, −y+3/2, z+1/2. |
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Aromatic sulfonates are used in monitoring the merging of lipids (Yachi et al., 1989) and in many other fields (Spungin et al., 1992, Tharakan et al.,1992, Alford et al., 1991, Jiang et al., 1990, Narayanan & Krakow, 1983). An X-ray study of the title compound was undertaken in order to determine its crystal and molecular structure owing to the biological importance of its analogues. The molecular structure of the title compound, C12H9NO5S, is shown in Fig. 1 with selected torsion angles provided in Table 1. The S—C, S—O and S=O bond lengths are all comparable to those found in related structures previously reported by our research group (Manivannan et al. 2005 & references cited therein).
A Newman projection along the O10—S1 bond is shown in Fig. 2. Using C11 as a reference point, the orientations of the two sulfonyl oxygen atoms (O8 and O9) and the phenyl carbon (C2) have been deduced from the corresponding torsion angles (C11–O10–S1–O8/O9/C2). Helical nomenclature is followed in assigning + or -synclinal and -antiperiplanar conformations. The C2–S1–O10–C11 torsion angle of 75.2 (1)° corresponds to +synclinal conformation. The dihedral angle between the mean planes of the phenyl and 4-nitrophenyl rings of 53.91 (4)° shows that the two rings are not coplanar. This is similar to the situation reported by us for other aromatic sulfonates (Manivannan et al. 2005 & references cited therein).
The crystal structure of the title compound is stabilized by the presence of weak intermolecular C—H···O (Fig. 3) (Desiraju et al., 1999) (Table 2) and π···π interactions. The symmetry related phenyl rings (C2—C7) [2 - x, 1 - y, -z] interact in a face to face manner with a separation of 3.664 Å.