Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807028383/wn2151sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807028383/wn2151Isup2.hkl |
CCDC reference: 654934
To a solution of ethyl 3-triphenylphosphoranylideneamino- 4-cyano-1-phenyl-1H-pyrrole-2-carboxylate(1.55 g, 3 mmol) in anhydrous dichloromethane (15 ml) was added p-chlorophenyl isocyanate (0.46 g, 3 mmol) under dry nitrogen at room temperature. The reaction mixture was left unstirred for 3 h at room temperature and then the solvent was removed under reduced pressure; diethyl ether-petroleum ether (1:2 v/v, 20 ml) was added to precipitate triphenylphosphine oxide. After filtration, the solution of the carbodiimide (3 mmol) was added to a solution of diisobutylamine (3 mmol) in anhydrous dichloromethane (15 ml). After stirring the reaction mixture for 6 h, the solvent was removed under reduced pressure and the residue was recrystallized from ethanol to give the title compound, in a yield of 94%. Crystals suitable for single-crystal X-ray diffraction were obtained by recrystallization from a mixed solvent of ethanol and dichloromethane (1:1 v/v) at room temperature.
All H-atoms were positioned geometrically and refined using a riding model with C—H = 0.93 Å, Uiso=1.2Ueq (C) for Csp2, C—H = 0.98 Å, Uiso = 1.2Ueq (C) for CH, C—H = 0.97 Å, Uiso = 1.2Ueq (C) for CH2, C—H = 0.96 Å, Uiso = 1.5Ueq (C) for CH3.
Derivatives of pyrimidinone are attracting increasing attention in the synthetic chemistry community because of the important role played by such systems in many natural products, also in antibiotics and drugs (Kondo et al., 1986; Bayomi et al., 1986; Ding et al., 2004). In recent years, we have been engaged in the preparation of derivatives of heterocycles using the aza-Wittig reaction. Some related X-ray crystal structure reports for pyrimidinone derivatives have been published (Zheng et al., 2006; Hu et al., 2005; Xu et al., 2005). Here, the structure of the title compound, which may be used as a new precursor for obtaining bioactive molecules, is reported (Fig. 1). The bond lengths and angles are unexceptional. Rings A (atoms N1/C7/C8/C9/C10), B (C9/C10/C12/N3/C13/N4), C (C1—C6), D (C14—C19) are, of course, planar and the dihedral angles between them are A/B = 2.80 (14)°, A/C = 51.66 (2)°, B/D = 65.79 (2)°. C21, C22, C23 and attached hydrogen atoms are disordered over two sites, with refined occupancies of 0.654 (8) and 0.346 (8). Intramolecular C—H···N hydrogen bonds determine the conformation of the molecule. As can be seen from the packing diagram (Fig. 2), intermolecular C—H···N hydrogen bonds (Table 1) link the molecules. There are no π-π interactions.
Related biological activity is described by Kondo et al. (1986) and pharmaceutical activity is described by Bayomi et al. (1986). For related literature, see: Ding et al. (2004); Hu et al. (2005); Xu et al. (2005); Zheng et al. (2006).
Data collection: SMART (Bruker, 2001); cell refinement: SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXTL (Sheldrick, 2001).
C27H28ClN5O | Z = 2 |
Mr = 473.99 | F(000) = 500 |
Triclinic, P1 | Dx = 1.244 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.7272 (6) Å | Cell parameters from 2745 reflections |
b = 12.7635 (9) Å | θ = 2.7–23.6° |
c = 13.3411 (9) Å | µ = 0.18 mm−1 |
α = 103.821 (1)° | T = 298 K |
β = 107.828 (1)° | Block, colourless |
γ = 106.684 (1)° | 0.20 × 0.20 × 0.10 mm |
V = 1265.14 (15) Å3 |
Bruker SMART 4K CCD area-detector diffractometer | 3633 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.031 |
Graphite monochromator | θmax = 26.0°, θmin = 1.7° |
φ and ω scans | h = −9→10 |
9851 measured reflections | k = −15→15 |
4890 independent reflections | l = −15→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.064 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.170 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0719P)2 + 0.5686P] where P = (Fo2 + 2Fc2)/3 |
4890 reflections | (Δ/σ)max = 0.001 |
341 parameters | Δρmax = 0.34 e Å−3 |
7 restraints | Δρmin = −0.31 e Å−3 |
C27H28ClN5O | γ = 106.684 (1)° |
Mr = 473.99 | V = 1265.14 (15) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.7272 (6) Å | Mo Kα radiation |
b = 12.7635 (9) Å | µ = 0.18 mm−1 |
c = 13.3411 (9) Å | T = 298 K |
α = 103.821 (1)° | 0.20 × 0.20 × 0.10 mm |
β = 107.828 (1)° |
Bruker SMART 4K CCD area-detector diffractometer | 3633 reflections with I > 2σ(I) |
9851 measured reflections | Rint = 0.031 |
4890 independent reflections |
R[F2 > 2σ(F2)] = 0.064 | 7 restraints |
wR(F2) = 0.170 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.34 e Å−3 |
4890 reflections | Δρmin = −0.31 e Å−3 |
341 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.6572 (4) | 0.2077 (2) | −0.3739 (2) | 0.0583 (7) | |
C2 | 0.8171 (4) | 0.1998 (3) | −0.3345 (3) | 0.0717 (8) | |
H2 | 0.8463 | 0.1702 | −0.2773 | 0.086* | |
C3 | 0.9347 (5) | 0.2372 (3) | −0.3822 (4) | 0.0979 (13) | |
H3 | 1.0439 | 0.2332 | −0.3560 | 0.117* | |
C4 | 0.8914 (7) | 0.2792 (4) | −0.4661 (4) | 0.1122 (16) | |
H4 | 0.9708 | 0.3037 | −0.4972 | 0.135* | |
C5 | 0.7319 (8) | 0.2857 (4) | −0.5054 (3) | 0.1098 (15) | |
H5 | 0.7033 | 0.3143 | −0.5635 | 0.132* | |
C6 | 0.6124 (5) | 0.2502 (3) | −0.4597 (2) | 0.0789 (9) | |
H6 | 0.5038 | 0.2550 | −0.4864 | 0.095* | |
C7 | 0.3635 (3) | 0.0923 (2) | −0.3943 (2) | 0.0576 (7) | |
H7 | 0.3168 | 0.0582 | −0.4725 | 0.069* | |
C8 | 0.2730 (3) | 0.0730 (2) | −0.3284 (2) | 0.0524 (6) | |
C9 | 0.3922 (3) | 0.1419 (2) | −0.2150 (2) | 0.0465 (6) | |
C10 | 0.5506 (3) | 0.1993 (2) | −0.2167 (2) | 0.0458 (6) | |
C11 | 0.0965 (4) | −0.0033 (3) | −0.3641 (2) | 0.0588 (7) | |
C12 | 0.6998 (3) | 0.2731 (2) | −0.1157 (2) | 0.0474 (6) | |
C13 | 0.4921 (3) | 0.2192 (2) | −0.0253 (2) | 0.0452 (6) | |
C14 | 0.8127 (3) | 0.3093 (2) | 0.08604 (19) | 0.0452 (6) | |
C15 | 0.8359 (3) | 0.2254 (2) | 0.1313 (2) | 0.0539 (6) | |
H15 | 0.7576 | 0.1477 | 0.0944 | 0.065* | |
C16 | 0.9774 (4) | 0.2580 (3) | 0.2325 (2) | 0.0619 (7) | |
H16 | 0.9936 | 0.2029 | 0.2647 | 0.074* | |
C17 | 1.0926 (3) | 0.3731 (3) | 0.2840 (2) | 0.0610 (7) | |
C18 | 1.0724 (3) | 0.4560 (3) | 0.2376 (2) | 0.0581 (7) | |
H18 | 1.1532 | 0.5332 | 0.2733 | 0.070* | |
C19 | 0.9316 (3) | 0.4243 (2) | 0.1376 (2) | 0.0494 (6) | |
H19 | 0.9169 | 0.4796 | 0.1052 | 0.059* | |
C20 | 0.5447 (3) | 0.3511 (2) | 0.1614 (2) | 0.0586 (7) | |
H20A | 0.6423 | 0.3999 | 0.1510 | 0.070* | 0.654 (8) |
H20B | 0.5915 | 0.3435 | 0.2340 | 0.070* | 0.654 (8) |
H20C | 0.5014 | 0.3445 | 0.2194 | 0.070* | 0.346 (8) |
H20D | 0.6700 | 0.3725 | 0.1957 | 0.070* | 0.346 (8) |
C21 | 0.4228 (6) | 0.4153 (4) | 0.1662 (4) | 0.0573 (15) | 0.654 (8) |
H21A | 0.3360 | 0.3718 | 0.1893 | 0.069* | 0.654 (8) |
C22 | 0.5259 (10) | 0.5372 (6) | 0.2575 (6) | 0.084 (2) | 0.654 (8) |
H22A | 0.6041 | 0.5850 | 0.2338 | 0.125* | 0.654 (8) |
H22B | 0.5921 | 0.5309 | 0.3263 | 0.125* | 0.654 (8) |
H22C | 0.4465 | 0.5724 | 0.2696 | 0.125* | 0.654 (8) |
C23 | 0.3231 (13) | 0.4174 (11) | 0.0508 (7) | 0.107 (5) | 0.654 (8) |
H23A | 0.2257 | 0.4376 | 0.0522 | 0.161* | 0.654 (8) |
H23B | 0.2815 | 0.3415 | −0.0058 | 0.161* | 0.654 (8) |
H23C | 0.3996 | 0.4745 | 0.0338 | 0.161* | 0.654 (8) |
C21' | 0.5166 (11) | 0.4456 (6) | 0.1302 (7) | 0.066 (3) | 0.346 (8) |
H21B | 0.5812 | 0.4620 | 0.0834 | 0.080* | 0.346 (8) |
C22' | 0.601 (2) | 0.5543 (10) | 0.2397 (11) | 0.108 (5) | 0.346 (8) |
H22D | 0.5362 | 0.5428 | 0.2856 | 0.161* | 0.346 (8) |
H22E | 0.5994 | 0.6223 | 0.2211 | 0.161* | 0.346 (8) |
H22F | 0.7195 | 0.5654 | 0.2804 | 0.161* | 0.346 (8) |
C23' | 0.3252 (13) | 0.4234 (14) | 0.0624 (12) | 0.063 (6) | 0.346 (8) |
H23D | 0.2529 | 0.3879 | 0.0966 | 0.094* | 0.346 (8) |
H23E | 0.2873 | 0.3721 | −0.0137 | 0.094* | 0.346 (8) |
H23F | 0.3159 | 0.4965 | 0.0621 | 0.094* | 0.346 (8) |
C24 | 0.3096 (3) | 0.1501 (2) | 0.0690 (2) | 0.0563 (7) | |
H24A | 0.2697 | 0.0782 | 0.0058 | 0.068* | |
H24B | 0.2192 | 0.1813 | 0.0549 | 0.068* | |
C25 | 0.3327 (5) | 0.1218 (3) | 0.1749 (3) | 0.0758 (9) | |
H25 | 0.3541 | 0.1921 | 0.2356 | 0.091* | |
C26 | 0.4823 (5) | 0.0853 (4) | 0.2111 (3) | 0.0942 (11) | |
H26A | 0.4693 | 0.0211 | 0.1499 | 0.141* | |
H26B | 0.4842 | 0.0614 | 0.2743 | 0.141* | |
H26C | 0.5898 | 0.1500 | 0.2325 | 0.141* | |
C27 | 0.1616 (5) | 0.0258 (4) | 0.1541 (4) | 0.1064 (14) | |
H27A | 0.1414 | −0.0451 | 0.0974 | 0.160* | |
H27B | 0.0667 | 0.0501 | 0.1290 | 0.160* | |
H27C | 0.1693 | 0.0121 | 0.2228 | 0.160* | |
Cl1 | 1.27079 (11) | 0.41284 (9) | 0.41014 (7) | 0.0982 (4) | |
N1 | 0.5307 (3) | 0.16805 (19) | −0.32917 (17) | 0.0524 (5) | |
N2 | −0.0439 (3) | −0.0646 (3) | −0.3894 (2) | 0.0774 (8) | |
N3 | 0.3580 (2) | 0.15372 (19) | −0.12032 (17) | 0.0497 (5) | |
N4 | 0.6615 (2) | 0.27220 (18) | −0.01855 (16) | 0.0462 (5) | |
N5 | 0.4693 (3) | 0.23473 (18) | 0.07389 (16) | 0.0501 (5) | |
O1 | 0.8471 (2) | 0.32784 (18) | −0.10456 (16) | 0.0667 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0707 (18) | 0.0551 (16) | 0.0468 (15) | 0.0199 (14) | 0.0289 (14) | 0.0130 (12) |
C2 | 0.0692 (19) | 0.0645 (19) | 0.086 (2) | 0.0272 (16) | 0.0413 (17) | 0.0191 (16) |
C3 | 0.092 (3) | 0.086 (3) | 0.123 (3) | 0.031 (2) | 0.069 (3) | 0.020 (2) |
C4 | 0.133 (4) | 0.099 (3) | 0.099 (3) | 0.016 (3) | 0.082 (3) | 0.018 (3) |
C5 | 0.158 (4) | 0.101 (3) | 0.061 (2) | 0.022 (3) | 0.058 (3) | 0.028 (2) |
C6 | 0.098 (2) | 0.083 (2) | 0.0471 (17) | 0.0248 (19) | 0.0292 (17) | 0.0220 (16) |
C7 | 0.0574 (16) | 0.0665 (17) | 0.0382 (14) | 0.0220 (14) | 0.0110 (12) | 0.0144 (12) |
C8 | 0.0476 (14) | 0.0623 (16) | 0.0398 (13) | 0.0215 (12) | 0.0098 (11) | 0.0158 (12) |
C9 | 0.0461 (13) | 0.0525 (14) | 0.0407 (13) | 0.0230 (11) | 0.0141 (11) | 0.0159 (11) |
C10 | 0.0476 (13) | 0.0510 (14) | 0.0389 (13) | 0.0222 (11) | 0.0155 (11) | 0.0151 (11) |
C11 | 0.0538 (17) | 0.0764 (19) | 0.0409 (14) | 0.0235 (15) | 0.0128 (12) | 0.0228 (13) |
C12 | 0.0469 (14) | 0.0478 (14) | 0.0451 (14) | 0.0181 (11) | 0.0163 (11) | 0.0158 (11) |
C13 | 0.0444 (13) | 0.0487 (14) | 0.0435 (13) | 0.0233 (11) | 0.0154 (11) | 0.0149 (11) |
C14 | 0.0419 (13) | 0.0529 (14) | 0.0389 (12) | 0.0222 (11) | 0.0125 (10) | 0.0135 (11) |
C15 | 0.0500 (14) | 0.0516 (15) | 0.0530 (15) | 0.0213 (12) | 0.0140 (12) | 0.0141 (12) |
C16 | 0.0609 (17) | 0.0708 (19) | 0.0602 (17) | 0.0329 (15) | 0.0182 (14) | 0.0330 (15) |
C17 | 0.0485 (15) | 0.082 (2) | 0.0450 (15) | 0.0242 (14) | 0.0092 (12) | 0.0242 (14) |
C18 | 0.0480 (14) | 0.0600 (16) | 0.0472 (15) | 0.0110 (12) | 0.0087 (12) | 0.0134 (13) |
C19 | 0.0477 (14) | 0.0484 (14) | 0.0483 (14) | 0.0188 (11) | 0.0149 (11) | 0.0167 (12) |
C20 | 0.0548 (15) | 0.0676 (18) | 0.0500 (15) | 0.0289 (14) | 0.0208 (13) | 0.0100 (13) |
C21 | 0.063 (3) | 0.063 (3) | 0.065 (3) | 0.034 (2) | 0.037 (2) | 0.030 (2) |
C22 | 0.097 (5) | 0.066 (4) | 0.103 (5) | 0.041 (3) | 0.057 (4) | 0.023 (3) |
C23 | 0.127 (10) | 0.163 (11) | 0.114 (9) | 0.116 (8) | 0.067 (7) | 0.090 (8) |
C21' | 0.078 (6) | 0.069 (6) | 0.088 (7) | 0.041 (5) | 0.056 (5) | 0.041 (5) |
C22' | 0.125 (12) | 0.059 (7) | 0.162 (14) | 0.046 (8) | 0.082 (11) | 0.035 (8) |
C23' | 0.061 (10) | 0.062 (9) | 0.070 (10) | 0.015 (7) | 0.036 (8) | 0.030 (7) |
C24 | 0.0582 (16) | 0.0648 (17) | 0.0486 (15) | 0.0251 (13) | 0.0239 (13) | 0.0207 (13) |
C25 | 0.093 (2) | 0.084 (2) | 0.068 (2) | 0.0432 (19) | 0.0426 (18) | 0.0344 (18) |
C26 | 0.118 (3) | 0.099 (3) | 0.090 (3) | 0.060 (2) | 0.042 (2) | 0.053 (2) |
C27 | 0.111 (3) | 0.135 (4) | 0.117 (3) | 0.050 (3) | 0.072 (3) | 0.082 (3) |
Cl1 | 0.0706 (5) | 0.1232 (8) | 0.0647 (5) | 0.0239 (5) | −0.0087 (4) | 0.0374 (5) |
N1 | 0.0533 (12) | 0.0604 (13) | 0.0385 (11) | 0.0190 (11) | 0.0168 (10) | 0.0155 (10) |
N2 | 0.0567 (16) | 0.098 (2) | 0.0611 (16) | 0.0145 (14) | 0.0131 (12) | 0.0334 (15) |
N3 | 0.0417 (11) | 0.0598 (13) | 0.0412 (11) | 0.0191 (10) | 0.0120 (9) | 0.0140 (10) |
N4 | 0.0411 (11) | 0.0522 (12) | 0.0381 (11) | 0.0170 (9) | 0.0106 (9) | 0.0126 (9) |
N5 | 0.0482 (12) | 0.0577 (13) | 0.0399 (11) | 0.0214 (10) | 0.0159 (9) | 0.0118 (10) |
O1 | 0.0501 (11) | 0.0781 (13) | 0.0556 (11) | 0.0079 (10) | 0.0209 (9) | 0.0185 (10) |
C1—C2 | 1.375 (4) | C20—C21' | 1.427 (7) |
C1—C6 | 1.379 (4) | C20—N5 | 1.464 (3) |
C1—N1 | 1.434 (3) | C20—C21 | 1.524 (4) |
C2—C3 | 1.397 (5) | C20—H20A | 0.9700 |
C2—H2 | 0.9300 | C20—H20B | 0.9700 |
C3—C4 | 1.351 (6) | C20—H20C | 0.9700 |
C3—H3 | 0.9300 | C20—H20D | 0.9700 |
C4—C5 | 1.364 (6) | C21—C22 | 1.528 (6) |
C4—H4 | 0.9300 | C21—C23 | 1.529 (7) |
C5—C6 | 1.384 (5) | C21—H21A | 0.9800 |
C5—H5 | 0.9300 | C22—H22A | 0.9600 |
C6—H6 | 0.9300 | C22—H22B | 0.9600 |
C7—N1 | 1.353 (3) | C22—H22C | 0.9600 |
C7—C8 | 1.369 (4) | C23—H23A | 0.9600 |
C7—H7 | 0.9300 | C23—H23B | 0.9600 |
C8—C11 | 1.420 (4) | C23—H23C | 0.9600 |
C8—C9 | 1.421 (3) | C21'—C23' | 1.539 (9) |
C9—N3 | 1.368 (3) | C21'—C22' | 1.545 (9) |
C9—C10 | 1.376 (3) | C21'—H21B | 0.9800 |
C10—N1 | 1.398 (3) | C22'—H22D | 0.9600 |
C10—C12 | 1.419 (3) | C22'—H22E | 0.9600 |
C11—N2 | 1.139 (3) | C22'—H22F | 0.9600 |
C12—O1 | 1.217 (3) | C23'—H23D | 0.9600 |
C12—N4 | 1.435 (3) | C23'—H23E | 0.9600 |
C13—N3 | 1.303 (3) | C23'—H23F | 0.9600 |
C13—N5 | 1.373 (3) | C24—N5 | 1.470 (3) |
C13—N4 | 1.403 (3) | C24—C25 | 1.509 (4) |
C14—C19 | 1.382 (3) | C24—H24A | 0.9700 |
C14—C15 | 1.383 (4) | C24—H24B | 0.9700 |
C14—N4 | 1.452 (3) | C25—C26 | 1.492 (5) |
C15—C16 | 1.391 (4) | C25—C27 | 1.531 (5) |
C15—H15 | 0.9300 | C25—H25 | 0.9800 |
C16—C17 | 1.374 (4) | C26—H26A | 0.9600 |
C16—H16 | 0.9300 | C26—H26B | 0.9600 |
C17—C18 | 1.374 (4) | C26—H26C | 0.9600 |
C17—Cl1 | 1.745 (3) | C27—H27A | 0.9600 |
C18—C19 | 1.381 (3) | C27—H27B | 0.9600 |
C18—H18 | 0.9300 | C27—H27C | 0.9600 |
C19—H19 | 0.9300 | ||
C2—C1—C6 | 120.9 (3) | H20B—C20—H20C | 45.8 |
C2—C1—N1 | 120.6 (3) | C21'—C20—H20D | 107.7 |
C6—C1—N1 | 118.4 (3) | N5—C20—H20D | 107.2 |
C1—C2—C3 | 118.6 (3) | C21—C20—H20D | 135.3 |
C1—C2—H2 | 120.7 | H20A—C20—H20D | 46.9 |
C3—C2—H2 | 120.7 | H20B—C20—H20D | 62.9 |
C4—C3—C2 | 120.6 (4) | H20C—C20—H20D | 106.9 |
C4—C3—H3 | 119.7 | C20—C21—C22 | 109.4 (4) |
C2—C3—H3 | 119.7 | C20—C21—C23 | 112.2 (5) |
C3—C4—C5 | 120.4 (4) | C22—C21—C23 | 113.2 (5) |
C3—C4—H4 | 119.8 | C20—C21—H20C | 37.8 |
C5—C4—H4 | 119.8 | C22—C21—H20C | 101.6 |
C4—C5—C6 | 120.6 (4) | C23—C21—H20C | 142.0 |
C4—C5—H5 | 119.7 | C20—C21—H21A | 107.2 |
C6—C5—H5 | 119.7 | C22—C21—H21A | 107.2 |
C1—C6—C5 | 118.8 (4) | C23—C21—H21A | 107.2 |
C1—C6—H6 | 120.6 | H20C—C21—H21A | 74.9 |
C5—C6—H6 | 120.6 | C20—C21'—C23' | 115.8 (8) |
N1—C7—C8 | 110.2 (2) | C20—C21'—C22' | 107.1 (8) |
N1—C7—H7 | 124.9 | C23'—C21'—C22' | 111.4 (7) |
C8—C7—H7 | 124.9 | C20—C21'—H21B | 107.4 |
C7—C8—C11 | 127.5 (2) | C23'—C21'—H21B | 107.4 |
C7—C8—C9 | 106.6 (2) | C22'—C21'—H21B | 107.4 |
C11—C8—C9 | 125.9 (2) | C21'—C22'—H22D | 109.5 |
N3—C9—C10 | 125.2 (2) | C21'—C22'—H22E | 109.5 |
N3—C9—C8 | 127.3 (2) | H22D—C22'—H22E | 109.5 |
C10—C9—C8 | 107.4 (2) | C21'—C22'—H22F | 109.5 |
C9—C10—N1 | 107.9 (2) | H22D—C22'—H22F | 109.5 |
C9—C10—C12 | 121.4 (2) | H22E—C22'—H22F | 109.5 |
N1—C10—C12 | 130.6 (2) | C21'—C23'—H23D | 109.5 |
N2—C11—C8 | 177.8 (3) | C21'—C23'—H23E | 109.5 |
O1—C12—C10 | 128.5 (2) | H23D—C23'—H23E | 109.5 |
O1—C12—N4 | 120.4 (2) | C21'—C23'—H23F | 109.5 |
C10—C12—N4 | 111.0 (2) | H23D—C23'—H23F | 109.5 |
N3—C13—N5 | 119.1 (2) | H23E—C23'—H23F | 109.5 |
N3—C13—N4 | 123.1 (2) | N5—C24—C25 | 113.9 (2) |
N5—C13—N4 | 117.8 (2) | N5—C24—H24A | 108.8 |
C19—C14—C15 | 121.0 (2) | C25—C24—H24A | 108.8 |
C19—C14—N4 | 121.1 (2) | N5—C24—H24B | 108.8 |
C15—C14—N4 | 117.9 (2) | C25—C24—H24B | 108.8 |
C14—C15—C16 | 119.6 (3) | H24A—C24—H24B | 107.7 |
C14—C15—H15 | 120.2 | C26—C25—C24 | 113.1 (3) |
C16—C15—H15 | 120.2 | C26—C25—C27 | 110.8 (3) |
C17—C16—C15 | 118.8 (3) | C24—C25—C27 | 108.1 (3) |
C17—C16—H16 | 120.6 | C26—C25—H25 | 108.2 |
C15—C16—H16 | 120.6 | C24—C25—H25 | 108.2 |
C18—C17—C16 | 121.7 (2) | C27—C25—H25 | 108.2 |
C18—C17—Cl1 | 119.8 (2) | C25—C26—H26A | 109.5 |
C16—C17—Cl1 | 118.5 (2) | C25—C26—H26B | 109.5 |
C17—C18—C19 | 119.7 (3) | H26A—C26—H26B | 109.5 |
C17—C18—H18 | 120.2 | C25—C26—H26C | 109.5 |
C19—C18—H18 | 120.2 | H26A—C26—H26C | 109.5 |
C18—C19—C14 | 119.2 (2) | H26B—C26—H26C | 109.5 |
C18—C19—H19 | 120.4 | C25—C27—H27A | 109.5 |
C14—C19—H19 | 120.4 | C25—C27—H27B | 109.5 |
C21'—C20—N5 | 118.7 (4) | H27A—C27—H27B | 109.5 |
C21'—C20—C21 | 43.4 (3) | C25—C27—H27C | 109.5 |
N5—C20—C21 | 116.8 (3) | H27A—C27—H27C | 109.5 |
C21'—C20—H20A | 66.6 | H27B—C27—H27C | 109.5 |
N5—C20—H20A | 108.1 | C7—N1—C10 | 107.9 (2) |
C21—C20—H20A | 108.1 | C7—N1—C1 | 123.4 (2) |
C21'—C20—H20B | 132.5 | C10—N1—C1 | 128.7 (2) |
N5—C20—H20B | 108.1 | C13—N3—C9 | 115.4 (2) |
C21—C20—H20B | 108.1 | C13—N4—C12 | 123.18 (19) |
H20A—C20—H20B | 107.3 | C13—N4—C14 | 120.53 (19) |
C21'—C20—H20C | 108.0 | C12—N4—C14 | 115.23 (18) |
N5—C20—H20C | 107.8 | C13—N5—C20 | 121.0 (2) |
C21—C20—H20C | 68.0 | C13—N5—C24 | 116.4 (2) |
H20A—C20—H20C | 140.9 | C20—N5—C24 | 116.6 (2) |
C6—C1—C2—C3 | 0.8 (5) | N5—C20—C21'—C22' | 176.7 (7) |
N1—C1—C2—C3 | 178.6 (3) | C21—C20—C21'—C22' | 77.0 (8) |
C1—C2—C3—C4 | −0.7 (5) | N5—C24—C25—C26 | −52.2 (4) |
C2—C3—C4—C5 | 0.1 (6) | N5—C24—C25—C27 | −175.3 (3) |
C3—C4—C5—C6 | 0.4 (7) | C8—C7—N1—C10 | 0.1 (3) |
C2—C1—C6—C5 | −0.4 (5) | C8—C7—N1—C1 | −178.5 (2) |
N1—C1—C6—C5 | −178.3 (3) | C9—C10—N1—C7 | −0.5 (3) |
C4—C5—C6—C1 | −0.2 (6) | C12—C10—N1—C7 | 178.1 (3) |
N1—C7—C8—C11 | −177.9 (3) | C9—C10—N1—C1 | 178.0 (2) |
N1—C7—C8—C9 | 0.3 (3) | C12—C10—N1—C1 | −3.4 (4) |
C7—C8—C9—N3 | 177.4 (2) | C2—C1—N1—C7 | −127.9 (3) |
C11—C8—C9—N3 | −4.3 (4) | C6—C1—N1—C7 | 49.9 (4) |
C7—C8—C9—C10 | −0.6 (3) | C2—C1—N1—C10 | 53.7 (4) |
C11—C8—C9—C10 | 177.6 (3) | C6—C1—N1—C10 | −128.4 (3) |
N3—C9—C10—N1 | −177.4 (2) | N5—C13—N3—C9 | −179.4 (2) |
C8—C9—C10—N1 | 0.7 (3) | N4—C13—N3—C9 | −1.6 (3) |
N3—C9—C10—C12 | 3.8 (4) | C10—C9—N3—C13 | −4.7 (4) |
C8—C9—C10—C12 | −178.1 (2) | C8—C9—N3—C13 | 177.6 (2) |
C7—C8—C11—N2 | 156 (9) | N3—C13—N4—C12 | 8.9 (4) |
C9—C8—C11—N2 | −22 (9) | N5—C13—N4—C12 | −173.2 (2) |
C9—C10—C12—O1 | 179.2 (3) | N3—C13—N4—C14 | −158.8 (2) |
N1—C10—C12—O1 | 0.8 (5) | N5—C13—N4—C14 | 19.1 (3) |
C9—C10—C12—N4 | 3.0 (3) | O1—C12—N4—C13 | 174.5 (2) |
N1—C10—C12—N4 | −175.5 (2) | C10—C12—N4—C13 | −9.0 (3) |
C19—C14—C15—C16 | 2.5 (4) | O1—C12—N4—C14 | −17.3 (3) |
N4—C14—C15—C16 | −178.8 (2) | C10—C12—N4—C14 | 159.3 (2) |
C14—C15—C16—C17 | −1.2 (4) | C19—C14—N4—C13 | −122.7 (3) |
C15—C16—C17—C18 | −0.7 (4) | C15—C14—N4—C13 | 58.6 (3) |
C15—C16—C17—Cl1 | −179.3 (2) | C19—C14—N4—C12 | 68.6 (3) |
C16—C17—C18—C19 | 1.1 (4) | C15—C14—N4—C12 | −110.0 (3) |
Cl1—C17—C18—C19 | 179.8 (2) | N3—C13—N5—C20 | −134.4 (2) |
C17—C18—C19—C14 | 0.2 (4) | N4—C13—N5—C20 | 47.6 (3) |
C15—C14—C19—C18 | −2.1 (4) | N3—C13—N5—C24 | 17.5 (3) |
N4—C14—C19—C18 | 179.3 (2) | N4—C13—N5—C24 | −160.5 (2) |
C21'—C20—C21—C22 | −72.3 (6) | C21'—C20—N5—C13 | 49.7 (5) |
N5—C20—C21—C22 | −176.7 (4) | C21—C20—N5—C13 | 99.0 (3) |
C21'—C20—C21—C23 | 54.2 (8) | C21'—C20—N5—C24 | −102.2 (5) |
N5—C20—C21—C23 | −50.2 (6) | C21—C20—N5—C24 | −52.8 (4) |
N5—C20—C21'—C23' | 51.8 (10) | C25—C24—N5—C13 | 145.7 (2) |
C21—C20—C21'—C23' | −47.9 (8) | C25—C24—N5—C20 | −61.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C24—H24A···N3 | 0.97 | 2.35 | 2.694 (3) | 100 |
C23—H23B···N5 | 0.96 | 2.57 | 2.995 (11) | 107 |
C20—H20A···N4 | 0.97 | 2.54 | 2.958 (3) | 106 |
C7—H7···N2i | 0.93 | 2.56 | 3.202 (4) | 126 |
Symmetry code: (i) −x, −y, −z−1. |
Experimental details
Crystal data | |
Chemical formula | C27H28ClN5O |
Mr | 473.99 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 8.7272 (6), 12.7635 (9), 13.3411 (9) |
α, β, γ (°) | 103.821 (1), 107.828 (1), 106.684 (1) |
V (Å3) | 1265.14 (15) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.18 |
Crystal size (mm) | 0.20 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART 4K CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9851, 4890, 3633 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.064, 0.170, 1.01 |
No. of reflections | 4890 |
No. of parameters | 341 |
No. of restraints | 7 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.34, −0.31 |
Computer programs: SMART (Bruker, 2001), SAINT-Plus (Bruker, 2001), SAINT-Plus, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXTL (Sheldrick, 2001).
D—H···A | D—H | H···A | D···A | D—H···A |
C24—H24A···N3 | 0.97 | 2.35 | 2.694 (3) | 100.3 |
C23—H23B···N5 | 0.96 | 2.57 | 2.995 (11) | 107.3 |
C20—H20A···N4 | 0.97 | 2.54 | 2.958 (3) | 106.3 |
C7—H7···N2i | 0.93 | 2.56 | 3.202 (4) | 126.2 |
Symmetry code: (i) −x, −y, −z−1. |
Derivatives of pyrimidinone are attracting increasing attention in the synthetic chemistry community because of the important role played by such systems in many natural products, also in antibiotics and drugs (Kondo et al., 1986; Bayomi et al., 1986; Ding et al., 2004). In recent years, we have been engaged in the preparation of derivatives of heterocycles using the aza-Wittig reaction. Some related X-ray crystal structure reports for pyrimidinone derivatives have been published (Zheng et al., 2006; Hu et al., 2005; Xu et al., 2005). Here, the structure of the title compound, which may be used as a new precursor for obtaining bioactive molecules, is reported (Fig. 1). The bond lengths and angles are unexceptional. Rings A (atoms N1/C7/C8/C9/C10), B (C9/C10/C12/N3/C13/N4), C (C1—C6), D (C14—C19) are, of course, planar and the dihedral angles between them are A/B = 2.80 (14)°, A/C = 51.66 (2)°, B/D = 65.79 (2)°. C21, C22, C23 and attached hydrogen atoms are disordered over two sites, with refined occupancies of 0.654 (8) and 0.346 (8). Intramolecular C—H···N hydrogen bonds determine the conformation of the molecule. As can be seen from the packing diagram (Fig. 2), intermolecular C—H···N hydrogen bonds (Table 1) link the molecules. There are no π-π interactions.