Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680703869X/wk2072sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680703869X/wk2072Isup2.hkl |
CCDC reference: 627193
Key indicators
- Single-crystal X-ray study
- T = 295 K
- Mean (C-C) = 0.004 Å
- R factor = 0.025
- wR factor = 0.068
- Data-to-parameter ratio = 11.6
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT417_ALERT_2_B Short Inter D-H..H-D H3A .. H7B .. 2.08 Ang.
Alert level C PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT731_ALERT_1_C Bond Calc 0.85(3), Rep 0.846(10) ...... 3.00 su-Ra O7 -H7B 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.85(3), Rep 0.846(10) ...... 3.00 su-Ra O7 -H7B 1.555 1.555 PLAT764_ALERT_4_C Overcomplete CIF Bond List Detected (Rep/Expd) . 1.14 Ratio
Alert level G PLAT793_ALERT_1_G Check the Absolute Configuration of P1 = ... R PLAT793_ALERT_1_G Check the Absolute Configuration of C1 = ... R PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 4
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 4 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 4 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
For related literature, see: Alberti et al. (1992); Clearfield (1988, 1998); Hix & Harris (1998); Modi et al. (2005); Nonglaton et al. (2004); Riou et al. (2000); Sharma & Clearfield (2000); Song et al. (1999).
A mixture of 0.27 g (1.0 mmol) NiSO4.6H2O, 1.0 ml (4.0 mmol) 2-hydroxyphosphonoacetic acid (48.0 wt %) and 0.04 g (1.0 mmol) NaF (as a mineralizer) was dissolved in 8 ml of deionized water, and then 1,4-butylenediamine was added with stirring to adjust the pH of the mixture. The mixture (pH = 4.5) was sealed in a 23 ml Teflon-lined stainless steel autoclave, and then heated at 413 K for 72 h. Colorless block crystals were obtained, washed with distilled water, and dried in air at room temperature.
During refinement, carbon bound H atoms were placed in calculated positions and allowed to ride on the parent atom, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C). Oxygen bound hydrogen atoms were located from difference Fourier maps and refined with distance restraints.
Metal phosphonates have been of increasing interest in the past decade due to their potential applications in the fields of catalysis (Sharma & Clearfield, 2000), ion exchange (Clearfield, 1988), proton conductivity (Alberti et al., 1992), gas and liquid separations (Riou et al., 2000), biology (Nonglaton et al., 2004), and organic molecule sorption (Clearfield, 1998). Great efforts have been devoted to the syntheses of novel inorganic–organic hybrid materials based on metal phosphonates, which exhibit a variety of structures such as one-dimensional chains, two-dimensional layers, and three-dimensional network. To the best of our knowledge, however, reports on nickel phosphonates are rather scarce (Hix & Harris, 1998; Song et al., 1999; Modi et al., 2005).
The title compound (I) crystallizes in the orthorhombic space group Pbca. The molecular structure of (I) is shown in the Fig. 1. Each Ni atom adopts distorted octahedral coordination geometry with the six oxygen atoms from the two equivalent L3- (L = O3PCH(OH)CO2) anions and two coordinated water molecule. The values of the Ni—O bond lengths and O—Ni—O angles are in the range of 2.0329 (19)–2.0888 (19) Å and 78.81 (7)–177.88 (8) °, respectively. This architecture is further stabilized by a number of O—H···O hydrogen bonds involving the protonated hydroxyl oxygen atoms, carboxylate oxygen atoms, phosphonate oxygen atom, and coordinated water molecules (see Table 1, Table 2 and Fig. 2).
For related literature, see: Alberti et al. (1992); Clearfield (1988, 1998); Hix & Harris (1998); Modi et al. (2005); Nonglaton et al. (2004); Riou et al. (2000); Sharma & Clearfield (2000); Song et al. (1999).
Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a); molecular graphics: SHELXTL (Sheldrick, 1997b); software used to prepare material for publication: SHELXTL.
[Ni(C2H3O6P)(H2O)2] | Dx = 2.320 Mg m−3 |
Mr = 248.76 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 2474 reflections |
a = 8.6776 (9) Å | θ = 2.4–28.2° |
b = 9.7953 (10) Å | µ = 2.96 mm−1 |
c = 16.7592 (16) Å | T = 295 K |
V = 1424.5 (2) Å3 | Block, green |
Z = 8 | 0.20 × 0.09 × 0.07 mm |
F(000) = 1008 |
Bruker APEXII CCD diffractometer | 1398 independent reflections |
Radiation source: fine-focus sealed tube | 1204 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
ω scans | θmax = 26.0°, θmin = 3.4° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −10→10 |
Tmin = 0.589, Tmax = 0.820 | k = −11→12 |
7058 measured reflections | l = −12→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.025 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.068 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0411P)2 + 1.2128P] where P = (Fo2 + 2Fc2)/3 |
1398 reflections | (Δ/σ)max < 0.001 |
121 parameters | Δρmax = 0.41 e Å−3 |
4 restraints | Δρmin = −0.48 e Å−3 |
[Ni(C2H3O6P)(H2O)2] | V = 1424.5 (2) Å3 |
Mr = 248.76 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 8.6776 (9) Å | µ = 2.96 mm−1 |
b = 9.7953 (10) Å | T = 295 K |
c = 16.7592 (16) Å | 0.20 × 0.09 × 0.07 mm |
Bruker APEXII CCD diffractometer | 1398 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 1204 reflections with I > 2σ(I) |
Tmin = 0.589, Tmax = 0.820 | Rint = 0.030 |
7058 measured reflections |
R[F2 > 2σ(F2)] = 0.025 | 4 restraints |
wR(F2) = 0.068 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.41 e Å−3 |
1398 reflections | Δρmin = −0.48 e Å−3 |
121 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 1.12817 (4) | −0.00201 (3) | 0.134842 (19) | 0.01264 (13) | |
P1 | 0.79917 (7) | 0.13589 (7) | 0.13742 (4) | 0.01399 (17) | |
O1 | 0.7275 (2) | 0.27285 (19) | 0.12260 (11) | 0.0205 (4) | |
O2 | 0.9474 (2) | 0.10843 (19) | 0.09274 (10) | 0.0190 (4) | |
O3 | 0.6732 (2) | 0.0253 (2) | 0.11674 (12) | 0.0227 (4) | |
H3A | 0.7113 | −0.0511 | 0.1198 | 0.034* | |
O4 | 0.7059 (2) | 0.14671 (17) | 0.28985 (10) | 0.0165 (4) | |
H4A | 0.7019 | 0.2294 | 0.2973 | 0.025* | |
O5 | 0.81452 (19) | −0.09508 (17) | 0.31593 (10) | 0.0149 (4) | |
O6 | 1.00059 (19) | −0.08174 (17) | 0.22600 (11) | 0.0152 (4) | |
O7 | 1.2642 (3) | 0.0773 (2) | 0.04608 (12) | 0.0287 (5) | |
H7A | 1.316 (3) | 0.150 (2) | 0.053 (2) | 0.034* | |
H7B | 1.294 (4) | 0.037 (3) | 0.0042 (13) | 0.034* | |
O8 | 1.0632 (2) | −0.17173 (19) | 0.06738 (11) | 0.0180 (4) | |
H8A | 1.044 (3) | −0.154 (3) | 0.0186 (8) | 0.022* | |
H8B | 0.9736 (17) | −0.194 (3) | 0.0817 (17) | 0.022* | |
C1 | 0.8399 (3) | 0.1148 (3) | 0.24425 (15) | 0.0131 (5) | |
H1A | 0.9228 | 0.1776 | 0.2594 | 0.016* | |
C2 | 0.8903 (3) | −0.0304 (3) | 0.26311 (15) | 0.0134 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0133 (2) | 0.0128 (2) | 0.0118 (2) | 0.00033 (12) | −0.00064 (12) | 0.00038 (12) |
P1 | 0.0154 (3) | 0.0132 (3) | 0.0134 (3) | 0.0021 (3) | 0.0003 (3) | 0.0013 (2) |
O1 | 0.0215 (10) | 0.0165 (10) | 0.0235 (10) | 0.0046 (8) | −0.0004 (8) | 0.0036 (8) |
O2 | 0.0180 (9) | 0.0251 (10) | 0.0137 (10) | 0.0071 (8) | 0.0018 (8) | 0.0035 (8) |
O3 | 0.0240 (10) | 0.0189 (10) | 0.0251 (11) | −0.0024 (8) | −0.0054 (9) | 0.0021 (8) |
O4 | 0.0216 (9) | 0.0090 (9) | 0.0190 (10) | 0.0020 (7) | 0.0069 (8) | 0.0007 (7) |
O5 | 0.0166 (9) | 0.0117 (9) | 0.0166 (9) | −0.0003 (7) | 0.0032 (7) | 0.0021 (7) |
O6 | 0.0146 (9) | 0.0136 (9) | 0.0173 (10) | 0.0015 (7) | 0.0032 (7) | 0.0011 (7) |
O7 | 0.0370 (12) | 0.0299 (12) | 0.0192 (11) | −0.0115 (10) | 0.0092 (10) | −0.0022 (9) |
O8 | 0.0183 (9) | 0.0212 (10) | 0.0144 (9) | −0.0011 (8) | −0.0011 (8) | −0.0011 (8) |
C1 | 0.0140 (12) | 0.0133 (13) | 0.0122 (13) | 0.0007 (10) | 0.0032 (10) | 0.0005 (9) |
C2 | 0.0129 (12) | 0.0152 (13) | 0.0120 (13) | −0.0019 (10) | −0.0037 (10) | −0.0017 (10) |
Ni1—O5i | 2.0314 (17) | O4—Ni1ii | 2.0422 (17) |
Ni1—O2 | 2.0322 (18) | O4—H4A | 0.8200 |
Ni1—O6 | 2.0419 (17) | O5—C2 | 1.271 (3) |
Ni1—O4i | 2.0422 (17) | O5—Ni1ii | 2.0314 (17) |
Ni1—O7 | 2.052 (2) | O6—C2 | 1.247 (3) |
Ni1—O8 | 2.0881 (19) | O7—H7A | 0.852 (10) |
P1—O1 | 1.4996 (19) | O7—H7B | 0.846 (10) |
P1—O2 | 1.5123 (19) | O8—H8A | 0.850 (10) |
P1—O3 | 1.578 (2) | O8—H8B | 0.843 (10) |
P1—C1 | 1.837 (3) | C1—C2 | 1.521 (3) |
O3—H3A | 0.8200 | C1—H1A | 0.9800 |
O4—C1 | 1.426 (3) | ||
O5i—Ni1—O2 | 173.98 (7) | P1—O3—H3A | 109.5 |
O5i—Ni1—O6 | 87.48 (7) | C1—O4—Ni1ii | 116.37 (14) |
O2—Ni1—O6 | 92.57 (7) | C1—O4—H4A | 109.5 |
O5i—Ni1—O4i | 78.82 (7) | Ni1ii—O4—H4A | 126.6 |
O2—Ni1—O4i | 95.17 (7) | C2—O5—Ni1ii | 118.09 (16) |
O6—Ni1—O4i | 89.40 (7) | C2—O6—Ni1 | 129.43 (17) |
O5i—Ni1—O7 | 90.37 (8) | Ni1—O7—H7A | 121 (2) |
O2—Ni1—O7 | 89.47 (8) | Ni1—O7—H7B | 127 (2) |
O6—Ni1—O7 | 177.68 (8) | H7A—O7—H7B | 111 (3) |
O4i—Ni1—O7 | 89.31 (8) | Ni1—O8—H8A | 114 (2) |
O5i—Ni1—O8 | 94.45 (7) | Ni1—O8—H8B | 108 (2) |
O2—Ni1—O8 | 91.56 (7) | H8A—O8—H8B | 99 (3) |
O6—Ni1—O8 | 87.37 (7) | O4—C1—C2 | 109.16 (19) |
O4i—Ni1—O8 | 172.66 (7) | O4—C1—P1 | 109.94 (16) |
O7—Ni1—O8 | 93.68 (8) | C2—C1—P1 | 111.29 (17) |
O1—P1—O2 | 115.47 (11) | O4—C1—H1A | 108.8 |
O1—P1—O3 | 106.88 (11) | C2—C1—H1A | 108.8 |
O2—P1—O3 | 111.01 (11) | P1—C1—H1A | 108.8 |
O1—P1—C1 | 110.00 (11) | O6—C2—O5 | 122.9 (2) |
O2—P1—C1 | 107.41 (11) | O6—C2—C1 | 119.6 (2) |
O3—P1—C1 | 105.67 (11) | O5—C2—C1 | 117.5 (2) |
P1—O2—Ni1 | 125.40 (10) |
Symmetry codes: (i) x+1/2, y, −z+1/2; (ii) x−1/2, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O1iii | 0.82 | 1.80 | 2.621 (3) | 173 |
O8—H8B···O1iii | 0.84 (1) | 1.90 (1) | 2.741 (3) | 173 (3) |
O4—H4A···O5iv | 0.82 | 1.75 | 2.573 (2) | 177 |
O7—H7A···O8v | 0.85 (1) | 2.05 (1) | 2.901 (3) | 178 (3) |
O7—H7B···O3vi | 0.85 (1) | 2.14 (1) | 2.958 (3) | 164 (3) |
O8—H8A···O2vi | 0.85 (1) | 1.92 (1) | 2.756 (3) | 167 (3) |
Symmetry codes: (iii) −x+3/2, y−1/2, z; (iv) −x+3/2, y+1/2, z; (v) −x+5/2, y+1/2, z; (vi) −x+2, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C2H3O6P)(H2O)2] |
Mr | 248.76 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 295 |
a, b, c (Å) | 8.6776 (9), 9.7953 (10), 16.7592 (16) |
V (Å3) | 1424.5 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 2.96 |
Crystal size (mm) | 0.20 × 0.09 × 0.07 |
Data collection | |
Diffractometer | Bruker APEXII CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.589, 0.820 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7058, 1398, 1204 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.025, 0.068, 1.05 |
No. of reflections | 1398 |
No. of parameters | 121 |
No. of restraints | 4 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.41, −0.48 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SAINT, SHELXS97 (Sheldrick, 1997a), SHELXL97 (Sheldrick, 1997a), SHELXTL (Sheldrick, 1997b), SHELXTL.
Ni1—O5i | 2.0314 (17) | P1—O2 | 1.5123 (19) |
Ni1—O2 | 2.0322 (18) | P1—O3 | 1.578 (2) |
Ni1—O6 | 2.0419 (17) | P1—C1 | 1.837 (3) |
Ni1—O4i | 2.0422 (17) | O4—C1 | 1.426 (3) |
Ni1—O7 | 2.052 (2) | O5—C2 | 1.271 (3) |
Ni1—O8 | 2.0881 (19) | O6—C2 | 1.247 (3) |
P1—O1 | 1.4996 (19) | C1—C2 | 1.521 (3) |
O5i—Ni1—O2 | 173.98 (7) | O6—Ni1—O7 | 177.68 (8) |
O5i—Ni1—O6 | 87.48 (7) | O4i—Ni1—O7 | 89.31 (8) |
O2—Ni1—O6 | 92.57 (7) | O5i—Ni1—O8 | 94.45 (7) |
O5i—Ni1—O4i | 78.82 (7) | O2—Ni1—O8 | 91.56 (7) |
O2—Ni1—O4i | 95.17 (7) | O6—Ni1—O8 | 87.37 (7) |
O6—Ni1—O4i | 89.40 (7) | O4i—Ni1—O8 | 172.66 (7) |
O5i—Ni1—O7 | 90.37 (8) | O7—Ni1—O8 | 93.68 (8) |
O2—Ni1—O7 | 89.47 (8) |
Symmetry code: (i) x+1/2, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O1ii | 0.82 | 1.80 | 2.621 (3) | 173.0 |
O8—H8B···O1ii | 0.843 (10) | 1.902 (11) | 2.741 (3) | 173 (3) |
O4—H4A···O5iii | 0.82 | 1.75 | 2.573 (2) | 177.3 |
O7—H7A···O8iv | 0.852 (10) | 2.049 (11) | 2.901 (3) | 178 (3) |
O7—H7B···O3v | 0.846 (10) | 2.135 (14) | 2.958 (3) | 164 (3) |
O8—H8A···O2v | 0.850 (10) | 1.921 (12) | 2.756 (3) | 167 (3) |
Symmetry codes: (ii) −x+3/2, y−1/2, z; (iii) −x+3/2, y+1/2, z; (iv) −x+5/2, y+1/2, z; (v) −x+2, −y, −z. |
Subscribe to Acta Crystallographica Section E: Crystallographic Communications
The full text of this article is available to subscribers to the journal.
- Information on subscribing
- Sample issue
- If you have already subscribed, you may need to register
Metal phosphonates have been of increasing interest in the past decade due to their potential applications in the fields of catalysis (Sharma & Clearfield, 2000), ion exchange (Clearfield, 1988), proton conductivity (Alberti et al., 1992), gas and liquid separations (Riou et al., 2000), biology (Nonglaton et al., 2004), and organic molecule sorption (Clearfield, 1998). Great efforts have been devoted to the syntheses of novel inorganic–organic hybrid materials based on metal phosphonates, which exhibit a variety of structures such as one-dimensional chains, two-dimensional layers, and three-dimensional network. To the best of our knowledge, however, reports on nickel phosphonates are rather scarce (Hix & Harris, 1998; Song et al., 1999; Modi et al., 2005).
The title compound (I) crystallizes in the orthorhombic space group Pbca. The molecular structure of (I) is shown in the Fig. 1. Each Ni atom adopts distorted octahedral coordination geometry with the six oxygen atoms from the two equivalent L3- (L = O3PCH(OH)CO2) anions and two coordinated water molecule. The values of the Ni—O bond lengths and O—Ni—O angles are in the range of 2.0329 (19)–2.0888 (19) Å and 78.81 (7)–177.88 (8) °, respectively. This architecture is further stabilized by a number of O—H···O hydrogen bonds involving the protonated hydroxyl oxygen atoms, carboxylate oxygen atoms, phosphonate oxygen atom, and coordinated water molecules (see Table 1, Table 2 and Fig. 2).