Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270100018552/vj1107sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270100018552/vj1107Isup2.hkl |
CCDC reference: 162547
For related literature, see: Adler et al. (1967, 1970); Maruyama et al. (1998); Ono et al. (1998); Scheidt & Lee (1987); Scheidt et al. (1986); Senge (1999); Shimidzu et al. (1995); Vollmer et al. (1998).
5,10,15,20-Tetrakis(2-thienyl)porphyrin was synthesized using the procedure of Adler et al. (1967) and recrystallized from CHCl3/CH3OH (1:1 v/v). Metallation of the porphyrin was carried out using zinc(II) acetate dihydrate as the metal carrier (Adler et al., 1970). The compound was purified by column chromatography using CHCl3 as the eluant and the yield of (I) was almost quantitative. Single crystals of (I) suitable for X-ray analysis were obtained by slow evaporation of a chloroform solution over a period of 4 d. Spectroscopic analysis: 1H NMR (CDCl3, p.p.m.): 9.15 (s, 8H, pyrrole-H), 7.90 (dd, 4H, thienyl-3H), 7.85 (dd, 4H, thienyl-4H), 7.50 (dd, 4H, thienyl-5H); elemental analysis calculated for C36H22N4S4: H 3.15, C 61.40, N 7.96%; found: H 3.01, C 61.12, N 8.01%; FAB mass spectrum (m/z), calculated for C36H20N4S4Zn: 702.2; found: 702.8.
The thienyl groups exhibit twofold rotational disorder about the C5—C6 and C14—C15 bonds, which was noticed at the structure-solution stage itself. The occupancies of the two components refined to unequal values in both cases [0.615 (5) and 0.386 (5) for S1/S1i, and 0.719 (6) and 0.281 (6) for S2/S2i; symmetry code: (i) 1 - x, 1 - y, -z]. Apart from the disordered thienyl groups, H atoms were fixed geometrically and were treated as riding on their parent atoms, with C—H distances of ?
Data collection: CAD-4 Software (Enraf-Nonius, 1989); cell refinement: CAD-4 Software; data reduction: MolEN (Fair, 1990); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON97 query; software used to prepare material for publication: SHELXL97.
[Zn(C36H20N4S4)] | F(000) = 716 |
Mr = 702.17 | Dx = 1.590 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 6.6009 (11) Å | Cell parameters from 25 reflections |
b = 10.9678 (17) Å | θ = 10–15° |
c = 20.278 (5) Å | µ = 1.16 mm−1 |
β = 92.704 (16)° | T = 293 K |
V = 1466.4 (5) Å3 | Plate, black |
Z = 2 | 0.2 × 0.2 × 0.1 mm |
Enraf-Nonius CAD4 diffractometer | 2163 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.037 |
Graphite monochromator | θmax = 25.6°, θmin = 2.1° |
ω/2θ scans | h = 0→7 |
Absorption correction: ψ scan (North et al., 1968) | k = 0→13 |
Tmin = 0.75, Tmax = 0.86 | l = −24→24 |
2879 measured reflections | 2 standard reflections every 60 min |
2637 independent reflections | intensity decay: none |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.15 | w = 1/[σ2(Fo2) + (0.0438P)2 + 2.6353P] where P = (Fo2 + 2Fc2)/3 |
2637 reflections | (Δ/σ)max = 0.005 |
239 parameters | Δρmax = 0.44 e Å−3 |
8 restraints | Δρmin = −0.40 e Å−3 |
[Zn(C36H20N4S4)] | V = 1466.4 (5) Å3 |
Mr = 702.17 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.6009 (11) Å | µ = 1.16 mm−1 |
b = 10.9678 (17) Å | T = 293 K |
c = 20.278 (5) Å | 0.2 × 0.2 × 0.1 mm |
β = 92.704 (16)° |
Enraf-Nonius CAD4 diffractometer | 2163 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.037 |
Tmin = 0.75, Tmax = 0.86 | 2 standard reflections every 60 min |
2879 measured reflections | intensity decay: none |
2637 independent reflections |
R[F2 > 2σ(F2)] = 0.040 | 8 restraints |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.15 | Δρmax = 0.44 e Å−3 |
2637 reflections | Δρmin = −0.40 e Å−3 |
239 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Zn | 1/2 | 1/2 | 0 | 0.03316 (19) | |
S1 | 0.5960 (9) | 0.8250 (7) | 0.2303 (3) | 0.0565 (11) | 0.615 (5) |
S1' | 0.250 (2) | 0.9269 (11) | 0.1579 (6) | 0.056 (2) | 0.386 (5) |
S2 | −0.0579 (4) | 0.2251 (3) | 0.16214 (13) | 0.0564 (6) | 0.719 (6) |
S2' | −0.2896 (13) | 0.2522 (12) | 0.0532 (6) | 0.080 (4) | 0.281 (6) |
N1 | 0.3080 (4) | 0.5291 (3) | 0.07163 (13) | 0.0324 (6) | |
N2 | 0.6625 (4) | 0.6516 (3) | 0.02761 (14) | 0.0324 (6) | |
C1 | 0.1453 (5) | 0.4585 (3) | 0.08613 (17) | 0.0349 (8) | |
C2 | 0.0372 (6) | 0.5163 (4) | 0.13648 (19) | 0.0436 (9) | |
H2 | −0.0805 | 0.4878 | 0.1547 | 0.052* | |
C3 | 0.1360 (6) | 0.6190 (3) | 0.15267 (18) | 0.0406 (9) | |
H3 | 0.0996 | 0.6750 | 0.1844 | 0.049* | |
C4 | 0.3072 (5) | 0.6276 (3) | 0.11260 (17) | 0.0342 (8) | |
C5 | 0.4525 (5) | 0.7211 (3) | 0.11547 (16) | 0.0340 (8) | |
C6 | 0.4296 (5) | 0.8162 (3) | 0.16527 (18) | 0.0373 (8) | |
C7 | 0.279 (5) | 0.903 (3) | 0.1713 (13) | 0.052 (6) | 0.614 (6) |
C7' | 0.536 (5) | 0.818 (4) | 0.2225 (19) | 0.056 (8) | 0.386 (6) |
C8 | 0.3097 (8) | 0.9800 (4) | 0.2284 (2) | 0.0604 (12) | |
C9 | 0.4658 (8) | 0.9354 (5) | 0.2630 (2) | 0.0615 (13) | |
C10 | 0.6131 (5) | 0.7326 (3) | 0.07504 (17) | 0.0346 (8) | |
C11 | 0.7439 (6) | 0.8373 (4) | 0.0726 (2) | 0.0451 (9) | |
H11 | 0.7422 | 0.9049 | 0.1003 | 0.054* | |
C12 | 0.8668 (6) | 0.8200 (4) | 0.0240 (2) | 0.0456 (9) | |
H12 | 0.9669 | 0.8730 | 0.0107 | 0.055* | |
C13 | 0.8159 (5) | 0.7035 (3) | −0.00424 (17) | 0.0350 (8) | |
C14 | 0.0912 (5) | 0.3470 (3) | 0.05731 (17) | 0.0350 (8) | |
C15 | −0.0724 (6) | 0.2758 (3) | 0.08605 (18) | 0.0378 (8) | |
C16 | −0.256 (2) | 0.2399 (14) | 0.0557 (7) | 0.045 (3)* | 0.719 (6) |
C16' | −0.026 (5) | 0.204 (3) | 0.1462 (16) | 0.074 (13)* | 0.281 (6) |
C17 | −0.3764 (7) | 0.1705 (5) | 0.1016 (3) | 0.0707 (14) | |
C18 | −0.2752 (9) | 0.1552 (5) | 0.1570 (3) | 0.0724 (15) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn | 0.0319 (3) | 0.0352 (3) | 0.0325 (3) | −0.0051 (2) | 0.0031 (2) | −0.0070 (2) |
S1 | 0.065 (3) | 0.0603 (18) | 0.0423 (15) | −0.0068 (18) | −0.0166 (17) | −0.0095 (13) |
S1' | 0.061 (4) | 0.047 (4) | 0.061 (5) | 0.007 (3) | 0.005 (4) | −0.016 (4) |
S2 | 0.0664 (13) | 0.0633 (13) | 0.0393 (11) | −0.0168 (11) | 0.0004 (10) | 0.0099 (10) |
S2' | 0.036 (4) | 0.101 (6) | 0.101 (5) | −0.020 (4) | −0.011 (3) | 0.032 (4) |
N1 | 0.0326 (15) | 0.0340 (16) | 0.0307 (14) | −0.0036 (12) | 0.0007 (12) | −0.0016 (12) |
N2 | 0.0296 (14) | 0.0338 (16) | 0.0338 (15) | −0.0024 (12) | 0.0001 (11) | −0.0066 (12) |
C1 | 0.0350 (18) | 0.0355 (18) | 0.0343 (18) | −0.0019 (15) | 0.0039 (14) | 0.0005 (15) |
C2 | 0.044 (2) | 0.044 (2) | 0.044 (2) | −0.0048 (17) | 0.0152 (16) | −0.0052 (17) |
C3 | 0.047 (2) | 0.038 (2) | 0.0371 (19) | −0.0017 (16) | 0.0115 (16) | −0.0076 (16) |
C4 | 0.0384 (19) | 0.0310 (18) | 0.0330 (18) | 0.0012 (14) | 0.0009 (14) | −0.0033 (14) |
C5 | 0.0386 (19) | 0.0321 (18) | 0.0308 (17) | 0.0014 (15) | −0.0027 (14) | −0.0027 (14) |
C6 | 0.040 (2) | 0.036 (2) | 0.0360 (19) | −0.0029 (16) | 0.0012 (15) | −0.0061 (15) |
C7 | 0.055 (11) | 0.054 (13) | 0.046 (8) | −0.005 (8) | −0.002 (6) | −0.001 (6) |
C7' | 0.063 (19) | 0.051 (9) | 0.053 (15) | −0.001 (13) | −0.007 (12) | −0.032 (9) |
C8 | 0.077 (3) | 0.051 (3) | 0.055 (3) | −0.007 (2) | 0.027 (2) | −0.011 (2) |
C9 | 0.083 (3) | 0.059 (3) | 0.044 (2) | −0.021 (3) | 0.012 (2) | −0.013 (2) |
C10 | 0.0352 (18) | 0.0336 (19) | 0.0347 (18) | −0.0027 (15) | −0.0013 (14) | −0.0066 (14) |
C11 | 0.044 (2) | 0.038 (2) | 0.054 (2) | −0.0081 (17) | 0.0065 (18) | −0.0158 (18) |
C12 | 0.043 (2) | 0.039 (2) | 0.055 (2) | −0.0129 (17) | 0.0089 (18) | −0.0115 (18) |
C13 | 0.0304 (18) | 0.0372 (19) | 0.0371 (18) | −0.0032 (15) | −0.0010 (14) | −0.0032 (15) |
C14 | 0.0330 (18) | 0.0364 (19) | 0.0353 (18) | −0.0017 (15) | 0.0001 (14) | 0.0005 (15) |
C15 | 0.039 (2) | 0.0372 (19) | 0.0373 (19) | −0.0028 (16) | 0.0040 (15) | −0.0018 (16) |
C17 | 0.050 (3) | 0.056 (3) | 0.108 (4) | −0.012 (2) | 0.018 (3) | 0.003 (3) |
C18 | 0.099 (4) | 0.052 (3) | 0.070 (3) | −0.013 (3) | 0.036 (3) | 0.004 (2) |
Zn—N1i | 1.998 (3) | C4—C5 | 1.403 (5) |
Zn—N1 | 1.998 (3) | C5—C10 | 1.376 (5) |
Zn—N2i | 2.043 (3) | C5—C6 | 1.465 (5) |
Zn—N2 | 2.043 (3) | C6—C7' | 1.33 (3) |
S1—C9 | 1.642 (10) | C6—C7 | 1.39 (3) |
S1—C6 | 1.679 (6) | C7—C8 | 1.44 (3) |
S1'—C8 | 1.577 (13) | C7'—C9 | 1.61 (4) |
S1'—C6 | 1.700 (12) | C8—C9 | 1.314 (7) |
S2—C18 | 1.625 (6) | C10—C11 | 1.439 (5) |
S2—C15 | 1.639 (4) | C11—C12 | 1.319 (5) |
S2'—C17 | 1.465 (14) | C12—C13 | 1.434 (5) |
S2'—C15 | 1.574 (9) | C13—C14i | 1.379 (5) |
N1—C4 | 1.363 (4) | C14—C13i | 1.379 (5) |
N1—C1 | 1.367 (4) | C14—C15 | 1.474 (5) |
N2—C13 | 1.352 (4) | C15—C16 | 1.391 (14) |
N2—C10 | 1.361 (4) | C15—C16' | 1.47 (4) |
C1—C14 | 1.395 (5) | C16—C17 | 1.466 (17) |
C1—C2 | 1.422 (5) | C16'—C18 | 1.75 (3) |
C2—C3 | 1.335 (5) | C17—C18 | 1.291 (8) |
C3—C4 | 1.426 (5) | ||
N1i—Zn—N1 | 180 | C6—C7—C8 | 113.5 (18) |
N1i—Zn—N2i | 90.79 (11) | C6—C7'—C9 | 108 (2) |
N1—Zn—N2i | 89.21 (11) | C9—C8—C7 | 106.7 (10) |
N1i—Zn—N2 | 89.21 (11) | C9—C8—S1' | 120.3 (6) |
N1—Zn—N2 | 90.79 (11) | C7—C8—S1' | 15.1 (11) |
N2i—Zn—N2 | 180 | C8—C9—C7' | 105.2 (11) |
C9—S1—C6 | 91.4 (4) | C8—C9—S1 | 118.1 (4) |
C8—S1'—C6 | 92.3 (6) | C7'—C9—S1 | 15.0 (10) |
C18—S2—C15 | 95.0 (3) | N2—C10—C5 | 125.3 (3) |
C17—S2'—C15 | 101.2 (7) | N2—C10—C11 | 109.4 (3) |
C4—N1—C1 | 107.0 (3) | C5—C10—C11 | 125.1 (3) |
C4—N1—Zn | 126.2 (2) | C12—C11—C10 | 107.5 (3) |
C1—N1—Zn | 126.7 (2) | C11—C12—C13 | 106.7 (3) |
C13—N2—C10 | 105.8 (3) | N2—C13—C14i | 125.1 (3) |
C13—N2—Zn | 127.4 (2) | N2—C13—C12 | 110.5 (3) |
C10—N2—Zn | 125.8 (2) | C14i—C13—C12 | 124.4 (3) |
N1—C1—C14 | 126.5 (3) | C13i—C14—C1 | 124.3 (3) |
N1—C1—C2 | 109.2 (3) | C13i—C14—C15 | 117.2 (3) |
C14—C1—C2 | 124.3 (3) | C1—C14—C15 | 118.5 (3) |
C3—C2—C1 | 107.2 (3) | C16—C15—C16' | 111.1 (16) |
C2—C3—C4 | 107.9 (3) | C16—C15—C14 | 127.9 (7) |
N1—C4—C5 | 125.6 (3) | C16'—C15—C14 | 118.9 (14) |
N1—C4—C3 | 108.7 (3) | C16—C15—S2' | 7.2 (10) |
C5—C4—C3 | 125.7 (3) | C16'—C15—S2' | 114.4 (15) |
C10—C5—C4 | 125.9 (3) | C14—C15—S2' | 126.1 (5) |
C10—C5—C6 | 116.9 (3) | C16—C15—S2 | 109.4 (7) |
C4—C5—C6 | 117.1 (3) | C16'—C15—S2 | 15.7 (12) |
C7'—C6—C7 | 105 (2) | C14—C15—S2 | 122.7 (3) |
C7'—C6—C5 | 123.1 (17) | S2'—C15—S2 | 110.7 (5) |
C7—C6—C5 | 130.4 (13) | C15—C16—C17 | 110.7 (10) |
C7'—C6—S1 | 9.3 (19) | C15—C16'—C18 | 96.2 (19) |
C7—C6—S1 | 109.7 (13) | C18—C17—S2' | 117.4 (6) |
C5—C6—S1 | 119.8 (4) | C18—C17—C16 | 110.3 (7) |
C7'—C6—S1' | 113.8 (18) | S2'—C17—C16 | 10.3 (8) |
C7—C6—S1' | 10.3 (14) | C17—C18—S2 | 114.4 (4) |
C5—C6—S1' | 122.9 (5) | C17—C18—C16' | 107.5 (12) |
S1—C6—S1' | 117.2 (5) | S2—C18—C16' | 14.9 (10) |
Symmetry code: (i) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C36H20N4S4)] |
Mr | 702.17 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 6.6009 (11), 10.9678 (17), 20.278 (5) |
β (°) | 92.704 (16) |
V (Å3) | 1466.4 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.16 |
Crystal size (mm) | 0.2 × 0.2 × 0.1 |
Data collection | |
Diffractometer | Enraf-Nonius CAD4 diffractometer |
Absorption correction | ψ scan (North et al., 1968) |
Tmin, Tmax | 0.75, 0.86 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2879, 2637, 2163 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.608 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.121, 1.15 |
No. of reflections | 2637 |
No. of parameters | 239 |
No. of restraints | 8 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.44, −0.40 |
Computer programs: CAD-4 Software (Enraf-Nonius, 1989), CAD-4 Software, MolEN (Fair, 1990), SHELXS97 (Sheldrick, 1990), SHELXL97 (Sheldrick, 1997), PLATON97 query, SHELXL97.
(I) | (II)a | |
Distances (Å) | ||
Zn-N1 | 1.998 (3) | 2.045 (2) |
Zn-N2 | 2.043 (3) | 2.029 (2) |
ZnII to meso carbon | ||
Zn-C5 | 3.395 (4) | 3.443 (2) |
Zn-C14i | 3.427 (5) | 3.451 (2) |
Dihedral angles (°) | ||
Core-Plane1b | 70 (4) | 60.6 |
Core-Plane2b | 67 (2) | 63.4 |
Plane1-Plane2 | 84 (3) | 78.0 |
Notes: (a) the data for (II) are taken from Scheidt et al. (1986); (b) for (I), Plane1 is the thienyl group attached to C5 and C5i, and Plane2 is the thienyl group attached to C14 and C14i; for (II), Plane1 and Plane2 are the phenyl groups attached to the meso-carbon atoms Ca and Cb, respectively [symmetry code: (i) 1 - x, 1 - y, -z]. |
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Meso-tetrathienylporphyrins are of growing interest owing to their unique energy transfer (Vollmer et al., 1998) and electrochemical (Ono et al., 1998) properties. Oligomeric (Shimidzu et al., 1995) and polymeric (Maruyama et al., 1998) thienylporphyrin films show interesting physicochemical properties. Here, we present the crystal structure of the title [meso-tetra(2-thienyl)porphyrinato]zinc(II) complex, (I). \sch
The molecular structure of (I) is shown in Fig. 1. The ZnII ion is free of axial ligands, with no solvate molecules in the crystal lattice. The closest ZnII to a thienyl S of an adjacent molecule is at a distance of 5.245 (3) Å. The observed bond lengths of the 24-atom core of (I) are similar to those of the four-coordinate [meso-5,10,15,20-tetraphenylporphinato]zinc(II), (II) (Scheidt & Lee, 1987).
Selected dihedral angles and bond lengths for (I) and (II) (Scheidt et al., 1986) are given in Table 1. The comparison is made to illustrate the effect of the thienyl groups on the stereochemical features of the porphyrin ring system. Notably, the central Zn to the meso carbon shows a shorter distance in (I) than in (II), indicative of a contraction of the porphyrin core. This is further reflected in the contraction of the Zn—N bond lengths (Table 1).
The deviations of the atoms of the 24-atom porphyrin core from the mean plane passing through the core are shown in Fig. 2. The porphyrin plane of (I) displays a wave-like conformation (Senge, 1999), with an interplanar porphyrin separation of 3.60 (6) Å, indicative of minimal interporphyrin interactions. The porphyrin molecules pack in a slipped-stack orientation.
It can be seen from Table 1 that the dihedral angles in (I) are higher than those found in (II). The thienyl groups in (I) are inclined with respect to the porphyrin plane at angles which differ by 3°. This is similar to (II), in which the difference between the two angles is 2.8°. The third C and the S atoms of the thienyl groups of (I) show disorder. In this structure, the ZnII ion is free of five- or six-coordination, possibly due to steric hindrance by the 2-thienyl groups.