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The structures of N-benzyl-N'-{6-[(4-carboxylatobenzyl)aminocarbonyl]-2-pyridylmethyl}guanidinium, C23H23N5O3, (I), and N-[2-(benzylaminocarbonyl)ethyl]-N'-{6-[(4-carboxylatobenzyl)aminocarbonyl]-2-pyridylmethyl}guanidinium monohydrate, C26H28N6O4·H2O, (II), both form three-dimensional supra­molecular hydrogen-bonded networks based on a dimeric primary synthon involving carboxyl­ate-guanidinium linkages. The differences in the geometries and hydrogen-bonding connectivities are driven by the additional methyl­propionamide group and water of crystallization of (II).

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270110029252/uk3023sup1.cif
Contains datablocks I, II, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270110029252/uk3023Isup2.hkl
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270110029252/uk3023IIsup3.hkl
Contains datablock II

CCDC references: 796075; 796076

Comment top

Guanidnium salts have been widely employed as motifs for carboxylate binding (Blondeau et al., 2007; Fitzmaurice et al., 2002) owing to a structural complementarity that results in well aligned hydrogen-bond donor and acceptor groups and favourable electrostatic interaction in the ion pair. We have recently reported a pyridylguanidinium receptor in which two additional, cooperative (amide) hydrogen-bond donors for binding carboxylate are incorporated, and in which the pyridine lone pair participates in intramolecular hydrogen bonding for preorganization of the binding motif (Fitzmaurice et al., 2007). Entropy-driven binding of acetate has been achieved in this system in competitive solution-phase media, and we have now prepared analogous systems, (I) and (II), extended in structure to incorporate a tethered carboxylate terminus. We aim to develop a simple supramolecular model based on dimerization of zwitterions (I) and (II), in which the energetic contribution of individual intermolecular binding interactions to the overall self-assembly, driven primarily by the guanidinium–carboxylate binding, can be determined. The present study of dimeric self-association of (I) and (II) was undertaken in order to investigate the ion-pair interaction and other contributing intramolecular interactions in the context of the overall assembly, and to inform monomer design.

The structure of (I) (Fig. 1) comprises an anionic benzoate group linked through a methylene group to a pyridinecarboxylic acid amide; this is in turn linked via another methylene group to a guanidinium cationic group terminated by a methylene-linked benzene ring. These four groups are individually essentially planar, with the three methylene groups acting as hinges, allowing the molecule to adopt a twisted conformation driven by steric and hydrogen-bonding influences. This can be described using the least-squares planes through the groups; the defined planes, the r.m.s. deviation from planarity and the atom with the maximum deviation from the plane are as follows: O1/O2/C1–C7, 0.097, O1 = 0.184 (2) Å; N1/N2/O3/C9–C14, 0.053, O3 = 0.095 (2) Å; N3/N4/N5/C16, 0.001, C16 = 0.001 (2) Å; and C18–C23, 0.032, C18 = 0.05 (2) Å. The angles between adjacent planes are 77.33 (6), 87.22 (8) and 81.97 (9)°, respectively, and infer that the groups are mutually perpendicular.

With the exception of a water of crystallization the molecular structure of (II) (Fig. 2) differs from (I) solely in the insertion of a methylpropionamide group before the terminal benzene ring. This additional group has a dramatic effect on the overall structure and geometry of the molecule. The least-squares planes, including the additional methylpropionamide group, are defined as previously as follows: O1/O2/C1–C7, 0.057, O1 =-0.111 (2) Å; N1/N2/O3/C9–C14, 0.036, C10 = -0.059 (2) Å; N3/N4/N5/C16, 0.004, C16 = 0.006 (2) Å; C18/C19/N6/O4, 0.007, C19 = -0.012 (2) Å; and C21–C26, 0.002, C26 = -0.004 (2) Å; these planes make angles of 67.43 (5), 4.11 (12), 73.16 (13) and 75.76 (10)°. It can be seen from these angles that the twist at the methylene connecting the pyridinecarboxylic acid amide and the guanidinium group is now much smaller [dihedral angle = 4.11 (12)°], making the combined group essentially flat. The remaining two hinges revert to rotations approaching 90° [73.16 (13) and 75.76 (10)°], continuing the corkscrew-like twist of the molecule.

Both (I) and (II) exist as zwitterions with a formal negative charge associated with the carboxylate group and a formal positive charge with the guanidinium group. Analysis of the bond lengths shows the guanidinium to be in a resonance hybrid form and in both (I) and (II) the differences between the bonds are within 3 s.u. of their values. In (I) the carboxylate group is clearly in its resonance hybrid form [O1—C1 = 1.263 (3) Å and O2—C1 1.264 (3) Å]. A similar case exists for (II) although a possible asymmetrical lengthening in favour of the stronger hydrogen-bond environment can be seen [O1—C1 = 1.254 (3) Å and O2—C1 = 1.261 (3) Å].

With their plethora of potential hydrogen-bond donors and acceptors it is unsurprising that both (I) and (II) form three-dimensional networks, and it is the interaction between the carboxylate and guanidinium groups that is responsible for the formation of a basic supramolecular building block (Figs. 3 and 4).

In (I), the guanidinium group is in the trans configuration [atom H93 is on the opposite side to the NH2 group (N4)], so that it is an NH (N5) and an NH2 (N4) group that participate in the carboxylate hydrogen bonding [N4···O2iii and N5···O1iii; symmetry code: (iii) -x + 2,-y + 1, -z + 1], whereas in (II) the group is in the cis form [both H atoms (H3 and H5) are on the opposite side from the NH2 group (N4)] and both NH groups (N3 and N5) are oriented towards the carboxylate group [N3···O1i and N5..O1i; symmetry code: (i) -x - 1, -y, -z; see Tables 1 and 2 for details]. In (I) both carboxylate O atoms hydrogen bond to separate H atoms of the guanidinium group, but the interaction is not planar, with the amine twisting away below the plane of the carboxylate group (the angle between the least-squares planes through each group is 42.76°). The (inversion) symmetry-related interactions complete a dimer or 34-membered ring [N4 ···O2iii and N5···O1iii; symmetry code: (iii) -x + 2, -y + 1, -z + 1], as depicted in Fig. 3.

In (II), the approach of the carboxylate and quanidinium units is characterized by a single bifurcated hydrogen bond from O1i to N3 and N5. The hydrogen-bonding environment of the carboxylate unit is now very different from that in (I), with atom O1 acting as a receptor in three hydrogen bonds, two from the guanidinium unit (N3···O1i and N5···O1i) and one from the amide group of the pyridinecarboxylic acid amide group (N1···O1i), see Fig. 4.

Additionally, the benzoate rings are arranged parallel in (II) such that ππ interactions become relevant; the C2–C7 centroid to C2i–C7i centroid separation is 3.662 Å, with the perpendicular distance between the least-squares planes through each benzene ring being 3.372 Å, as depecited with a dashed line in Fig. 4. It is possible that the ππ interaction arises from the changed geometry of the guanidinium–carboxylate interaction compared to (I), but more likely provides a cooperative driving-force for this offset ion-pair interaction in combination with the hydrogen bonding from the propionamide group to the water molecule (N6···O1W) described below.

For the packing of (I), the dimer rings are stacked via other hydrogen bonds (N4···O2i and N1···O1) to form a one-dimensional molecular chain structure along the a axis. In the structure, guanidinium–carboxylate hydrogen-bonded pairs are connected via N4···O2i hydrogen bonds. A herringbone-like arrangement is also observed when the structure is viewed down the c axis. The supramolecular structure of (II) is punctuated by hydrogen-bonded rings formed around a centre of symmetry via two water molecules and two O atoms of two separate carboxylate groups [O1W···O2i and O1W···O2iv; symmetry code: (iv) x + 1, y + 1, z]. The water molecules also act as acceptors in hydrogen bonds to the methyl propionamide groups (N6···O1W) such that the rings connect four individual molecules.

As a general point hydrogen-bond interactions between a guanidinium and carboxylate group often form a subunit characterized by linear bidendate interactions. However, it is often observed that other competitive interactions can force a nonplanar geometry for this unit (e.g. Zafar et al., 2002). Preliminary searches of the Cambridge Structural Database (Allen, 2002) for such interactions show a wide range of geometries and will be the subject of a subsequent study.

Related literature top

For related literature, see: Allen (2002); Blondeau et al. (2007); Fitzmaurice et al. (2002, 2007); Zafar et al. (2002).

Experimental top

Full synthetic procedures for the stepwise preparation of (I) and (II) from ethyl 6-{[bis(tert-butoxycarbonyl)amino]methyl}pyridine-2-carboxylate will be reported elsewhere. Single crystals were obtained by slow diffusion of a 40 mM solution of each in MeOH with CH2Cl2 for (I) and with Et2O for (II).

Refinement top

C-bound H atoms were identified in a difference map and subsequently placed in idealized positions and refined using a riding model (aromatic C—H = 0.95 Å and methylene C—H = 0.99 Å). N-bound H atoms were located in the difference map and their coordinates set as riding on their parent atoms. For all C- and N-bound atoms the displacement parameters were set at 1.2 times Ueq of the parent atom. In (II), the H atoms of the water molecule were clearly visible in the difference map as the two highest residual density peaks. These were included in the model and refined using distance restraints [O—H = 0.84 (2) Å and H···H = 1.37 (2) Å]; displacement parameters were constrained to 1.5 times those of the parent O atom. Also in (II), a void of 76 Å3 exists around a centre of symmetry (1/2, 1, 1/2), but no significant residual electron density was observed in this region.

Computing details top

For both compounds, data collection: COLLECT (Hooft, 1998); cell refinement: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); data reduction: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalMaker (CrystalMaker, 2005); software used to prepare material for publication: WinGX (Farrugia, 1999) and publCIF (Westrip, 2010).

Figures top
[Figure 1] Fig. 1. The molecular structure of (I); displacement ellipsoids are drawn at the 35% probability level and H atoms are drawn with an arbitrary radius.
[Figure 2] Fig. 2. The molecular structure of (II); displacement ellipsoids are drawn at the 35% probability level and H atoms are drawn with an arbitrary radius.
[Figure 3] Fig. 3. The dimeric primary synthon in (I), showing the extended hydrogen-bonding environment. H atoms not involved in significant close contacts have been omitted for clarity. [Symmetry codes: (i) x - 1, y, z; (ii) x - 1/2, -y + 1/2, z + 1/2; (iii) -x + 2, -y + 1, -z + 1.]
[Figure 4] Fig. 4. The dimeric primary synthon in (II), showing the extended hydrogen-bonding environment. H atoms not involved in significant close contacts have been omitted for clarity. ππ interactions are depicted using a dashed line between ring centroids. [Symmetry codes: (i) -x - 1, -y, -z; (ii) x + 1, y, z; (iii) -x + 1, -y + 1, -z + 1; (iv) x + 1, y + 1, z.]
(I) N-benzyl-N'-{6-[(4-carboxylatobenzyl)aminocarbonyl]- 2-pyridylmethyl}guanidinium top
Crystal data top
C23H23N5O3F(000) = 880
Mr = 417.46Dx = 1.387 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 23640 reflections
a = 8.1826 (3) Åθ = 2.9–27.5°
b = 18.1530 (7) ŵ = 0.10 mm1
c = 13.4723 (4) ÅT = 120 K
β = 92.601 (2)°Prism, colourless
V = 1999.10 (12) Å30.15 × 0.1 × 0.1 mm
Z = 4
Data collection top
Bruker–Nonius KappaCCD
diffractometer
3519 independent reflections
Radiation source: Bruker Nonius FR591 Rotating Anode2719 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.078
Detector resolution: 9.091 pixels mm-1θmax = 25.0°, θmin = 3.0°
ϕ & ω scans to fill the asymmetric unith = 99
Absorption correction: multi-scan
(SADABS; Sheldrick, 2003)
k = 2121
Tmin = 0.986, Tmax = 0.991l = 1615
16252 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.0158P)2 + 3.0515P]
where P = (Fo2 + 2Fc2)/3
3519 reflections(Δ/σ)max < 0.001
280 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = 0.28 e Å3
Crystal data top
C23H23N5O3V = 1999.10 (12) Å3
Mr = 417.46Z = 4
Monoclinic, P21/nMo Kα radiation
a = 8.1826 (3) ŵ = 0.10 mm1
b = 18.1530 (7) ÅT = 120 K
c = 13.4723 (4) Å0.15 × 0.1 × 0.1 mm
β = 92.601 (2)°
Data collection top
Bruker–Nonius KappaCCD
diffractometer
3519 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 2003)
2719 reflections with I > 2σ(I)
Tmin = 0.986, Tmax = 0.991Rint = 0.078
16252 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0600 restraints
wR(F2) = 0.132H-atom parameters constrained
S = 1.08Δρmax = 0.27 e Å3
3519 reflectionsΔρmin = 0.28 e Å3
280 parameters
Special details top

Experimental. SADABS was used to perform the Absorption correction Parameter refinement on 15081 reflections reduced R(int) from 0.1139 to 0.0766 Ratio of minimum to maximum apparent transmission: 0.625353 The given Tmin and Tmax were generated using the SHELX SIZE command

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.

[O1,O2, C1 > C7; 0.097, O1 = 0.184?(2) Å] [N1, N2,O3, C9 > C14; 0.053, O3 = 0.095?(2) Å] [N3, N4, N5, C16; 0.001; C16 = 0.001?(2) Å] [C18 > C23; 0.032; C18 = 0.05?(2) Å]

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O11.3365 (2)0.52932 (10)0.26253 (14)0.0268 (4)
O21.2351 (2)0.52170 (10)0.41360 (14)0.0283 (5)
O30.5851 (2)0.28738 (10)0.13782 (14)0.0291 (5)
N10.4844 (3)0.39583 (12)0.18880 (16)0.0236 (5)
H910.42200.41880.23100.028*
N20.3162 (3)0.32837 (12)0.33001 (16)0.0235 (5)
N30.2331 (3)0.34011 (12)0.57518 (16)0.0242 (5)
H930.19500.30340.61100.029*
N40.4363 (3)0.42461 (12)0.54329 (16)0.0248 (5)
H94A0.54810.44060.55800.030*
H94B0.36710.44740.50000.030*
N50.4694 (3)0.34621 (13)0.67591 (16)0.0270 (5)
H950.54600.37680.69300.032*
C11.2223 (3)0.51636 (14)0.3200 (2)0.0237 (6)
C21.0593 (3)0.49319 (14)0.2726 (2)0.0242 (6)
C31.0473 (3)0.47355 (15)0.1726 (2)0.0263 (6)
H31.14270.47340.13490.032*
C40.8978 (3)0.45428 (16)0.1274 (2)0.0274 (6)
H40.89250.44030.05940.033*
C50.7564 (3)0.45501 (14)0.1797 (2)0.0241 (6)
C60.7694 (3)0.47318 (15)0.2807 (2)0.0267 (6)
H60.67410.47300.31850.032*
C70.9188 (3)0.49143 (15)0.3264 (2)0.0259 (6)
H70.92520.50280.39530.031*
C80.5908 (3)0.43965 (15)0.1286 (2)0.0252 (6)
H8A0.53620.48710.11230.030*
H8B0.60720.41340.06540.030*
C90.4953 (3)0.32265 (15)0.19234 (19)0.0232 (6)
C100.3965 (3)0.28445 (15)0.26769 (19)0.0230 (6)
C110.3983 (3)0.20860 (15)0.2743 (2)0.0270 (6)
H110.45390.17970.22770.032*
C120.3170 (4)0.17546 (16)0.3506 (2)0.0291 (7)
H120.31570.12340.35730.035*
C130.2381 (3)0.21964 (15)0.4166 (2)0.0262 (6)
H130.18390.19830.47050.031*
C140.2386 (3)0.29581 (15)0.40364 (19)0.0235 (6)
C150.1531 (3)0.34495 (15)0.47563 (19)0.0240 (6)
H15A0.15590.39660.45200.029*
H15B0.03720.32990.47860.029*
C160.3784 (3)0.37029 (15)0.59783 (19)0.0233 (6)
C170.4386 (3)0.27784 (15)0.7282 (2)0.0265 (6)
H17A0.54510.25440.74630.032*
H17B0.37780.24420.68210.032*
C180.3437 (3)0.28563 (15)0.8213 (2)0.0253 (6)
C190.2908 (3)0.22244 (17)0.8686 (2)0.0308 (7)
H190.30870.17560.83940.037*
C200.2126 (4)0.22667 (19)0.9575 (2)0.0373 (8)
H200.17800.18300.98910.045*
C210.1848 (4)0.29461 (19)1.0001 (2)0.0402 (8)
H210.13150.29771.06110.048*
C220.2353 (4)0.35811 (19)0.9533 (2)0.0400 (8)
H220.21590.40490.98200.048*
C230.3140 (4)0.35338 (16)0.8645 (2)0.0340 (7)
H230.34810.39720.83280.041*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0273 (10)0.0251 (11)0.0281 (10)0.0015 (8)0.0033 (8)0.0014 (8)
O20.0333 (11)0.0258 (11)0.0256 (11)0.0011 (8)0.0025 (8)0.0008 (8)
O30.0336 (11)0.0262 (11)0.0277 (10)0.0049 (9)0.0046 (9)0.0007 (8)
N10.0267 (12)0.0212 (12)0.0232 (12)0.0000 (9)0.0042 (9)0.0023 (9)
N20.0242 (12)0.0251 (12)0.0210 (11)0.0026 (9)0.0015 (9)0.0011 (10)
N30.0294 (13)0.0228 (12)0.0205 (11)0.0036 (10)0.0019 (9)0.0031 (9)
N40.0302 (13)0.0214 (12)0.0226 (12)0.0039 (10)0.0005 (9)0.0044 (10)
N50.0308 (13)0.0244 (13)0.0254 (12)0.0079 (10)0.0035 (10)0.0030 (10)
C10.0302 (15)0.0114 (13)0.0295 (15)0.0032 (11)0.0019 (12)0.0004 (11)
C20.0295 (15)0.0159 (14)0.0271 (14)0.0012 (11)0.0002 (11)0.0027 (11)
C30.0259 (15)0.0281 (15)0.0254 (14)0.0020 (12)0.0060 (11)0.0010 (12)
C40.0318 (16)0.0287 (16)0.0218 (14)0.0009 (12)0.0018 (12)0.0030 (12)
C50.0286 (15)0.0157 (13)0.0278 (14)0.0003 (11)0.0009 (11)0.0013 (11)
C60.0264 (15)0.0248 (15)0.0291 (15)0.0018 (12)0.0048 (12)0.0009 (12)
C70.0327 (16)0.0228 (15)0.0223 (14)0.0001 (12)0.0015 (12)0.0001 (11)
C80.0284 (15)0.0211 (14)0.0262 (14)0.0014 (11)0.0015 (11)0.0003 (11)
C90.0236 (14)0.0262 (16)0.0197 (13)0.0015 (11)0.0006 (11)0.0028 (11)
C100.0228 (14)0.0242 (15)0.0217 (13)0.0003 (11)0.0012 (11)0.0014 (11)
C110.0290 (15)0.0241 (16)0.0277 (15)0.0004 (12)0.0003 (12)0.0032 (12)
C120.0388 (17)0.0198 (15)0.0285 (15)0.0028 (12)0.0026 (12)0.0014 (12)
C130.0309 (15)0.0227 (15)0.0250 (14)0.0035 (12)0.0008 (12)0.0014 (11)
C140.0243 (14)0.0251 (15)0.0208 (13)0.0002 (11)0.0047 (11)0.0015 (11)
C150.0265 (14)0.0224 (15)0.0228 (14)0.0013 (11)0.0009 (11)0.0009 (11)
C160.0268 (15)0.0209 (14)0.0221 (14)0.0000 (11)0.0018 (11)0.0026 (11)
C170.0344 (16)0.0212 (14)0.0235 (14)0.0002 (12)0.0041 (12)0.0021 (11)
C180.0247 (14)0.0275 (15)0.0233 (14)0.0006 (12)0.0023 (11)0.0055 (12)
C190.0317 (16)0.0300 (16)0.0302 (15)0.0030 (13)0.0040 (12)0.0061 (13)
C200.0334 (17)0.045 (2)0.0334 (17)0.0054 (14)0.0012 (13)0.0142 (15)
C210.0354 (18)0.057 (2)0.0281 (16)0.0056 (15)0.0036 (13)0.0063 (15)
C220.049 (2)0.041 (2)0.0305 (17)0.0082 (15)0.0054 (14)0.0012 (14)
C230.0466 (19)0.0257 (16)0.0300 (16)0.0013 (14)0.0030 (13)0.0018 (13)
Geometric parameters (Å, º) top
O1—C11.263 (3)C7—H70.9500
O2—C11.264 (3)C8—H8A0.9900
O3—C91.241 (3)C8—H8B0.9900
N1—C91.332 (3)C9—C101.496 (4)
N1—C81.453 (3)C10—C111.380 (4)
N1—H910.8856C11—C121.387 (4)
N2—C141.339 (3)C11—H110.9500
N2—C101.350 (3)C12—C131.379 (4)
N3—C161.332 (3)C12—H120.9500
N3—C151.468 (3)C13—C141.394 (4)
N3—H930.8875C13—H130.9500
N4—C161.330 (3)C14—C151.512 (4)
N4—H94A0.9716C15—H15A0.9900
N4—H94B0.8953C15—H15B0.9900
N5—C161.335 (3)C17—C181.512 (4)
N5—C171.455 (3)C17—H17A0.9900
N5—H950.8611C17—H17B0.9900
C1—C21.512 (4)C18—C231.386 (4)
C2—C71.387 (4)C18—C191.390 (4)
C2—C31.394 (4)C19—C201.386 (4)
C3—C41.386 (4)C19—H190.9500
C3—H30.9500C20—C211.383 (5)
C4—C51.381 (4)C20—H200.9500
C4—H40.9500C21—C221.386 (5)
C5—C61.399 (4)C21—H210.9500
C5—C81.518 (4)C22—C231.387 (4)
C6—C71.385 (4)C22—H220.9500
C6—H60.9500C23—H230.9500
C9—N1—C8121.7 (2)C10—C11—C12118.5 (3)
C9—N1—H91119.1C10—C11—H11120.8
C8—N1—H91118.5C12—C11—H11120.8
C14—N2—C10117.4 (2)C13—C12—C11118.7 (3)
C16—N3—C15122.7 (2)C13—C12—H12120.7
C16—N3—H93121.1C11—C12—H12120.7
C15—N3—H93112.9C12—C13—C14119.5 (3)
C16—N4—H94A117.7C12—C13—H13120.3
C16—N4—H94B118.2C14—C13—H13120.3
H94A—N4—H94B123.8N2—C14—C13122.3 (2)
C16—N5—C17123.9 (2)N2—C14—C15117.6 (2)
C16—N5—H95111.9C13—C14—C15120.1 (2)
C17—N5—H95124.1N3—C15—C14110.5 (2)
O1—C1—O2124.6 (2)N3—C15—H15A109.5
O1—C1—C2117.1 (2)C14—C15—H15A109.5
O2—C1—C2118.3 (2)N3—C15—H15B109.5
C7—C2—C3118.4 (3)C14—C15—H15B109.5
C7—C2—C1121.5 (2)H15A—C15—H15B108.1
C3—C2—C1120.1 (2)N4—C16—N3121.0 (2)
C4—C3—C2120.7 (2)N4—C16—N5118.6 (2)
C4—C3—H3119.6N3—C16—N5120.4 (2)
C2—C3—H3119.6N5—C17—C18115.4 (2)
C5—C4—C3121.1 (3)N5—C17—H17A108.4
C5—C4—H4119.4C18—C17—H17A108.4
C3—C4—H4119.4N5—C17—H17B108.4
C4—C5—C6118.0 (2)C18—C17—H17B108.4
C4—C5—C8121.2 (2)H17A—C17—H17B107.5
C6—C5—C8120.7 (2)C23—C18—C19118.4 (3)
C7—C6—C5121.0 (3)C23—C18—C17122.5 (3)
C7—C6—H6119.5C19—C18—C17119.0 (3)
C5—C6—H6119.5C20—C19—C18121.0 (3)
C6—C7—C2120.6 (3)C20—C19—H19119.5
C6—C7—H7119.7C18—C19—H19119.5
C2—C7—H7119.7C21—C20—C19119.9 (3)
N1—C8—C5113.1 (2)C21—C20—H20120.0
N1—C8—H8A109.0C19—C20—H20120.0
C5—C8—H8A109.0C20—C21—C22119.7 (3)
N1—C8—H8B109.0C20—C21—H21120.2
C5—C8—H8B109.0C22—C21—H21120.2
H8A—C8—H8B107.8C21—C22—C23120.0 (3)
O3—C9—N1122.3 (2)C21—C22—H22120.0
O3—C9—C10121.0 (2)C23—C22—H22120.0
N1—C9—C10116.7 (2)C18—C23—C22120.9 (3)
N2—C10—C11123.6 (2)C18—C23—H23119.6
N2—C10—C9116.2 (2)C22—C23—H23119.6
C11—C10—C9120.1 (2)
O1—C1—C2—C7167.4 (2)C9—C10—C11—C12174.4 (2)
O2—C1—C2—C712.3 (4)C10—C11—C12—C130.1 (4)
O1—C1—C2—C312.0 (4)C11—C12—C13—C141.6 (4)
O2—C1—C2—C3168.2 (2)C10—N2—C14—C130.4 (4)
C7—C2—C3—C41.4 (4)C10—N2—C14—C15178.0 (2)
C1—C2—C3—C4178.1 (2)C12—C13—C14—N21.4 (4)
C2—C3—C4—C51.0 (4)C12—C13—C14—C15179.8 (2)
C3—C4—C5—C62.3 (4)C16—N3—C15—C1472.7 (3)
C3—C4—C5—C8175.3 (3)N2—C14—C15—N3113.7 (3)
C4—C5—C6—C71.3 (4)C13—C14—C15—N364.7 (3)
C8—C5—C6—C7176.2 (2)C15—N3—C16—N421.1 (4)
C5—C6—C7—C21.0 (4)C15—N3—C16—N5158.6 (2)
C3—C2—C7—C62.4 (4)C17—N5—C16—N4166.1 (2)
C1—C2—C7—C6177.1 (2)C17—N5—C16—N313.6 (4)
C9—N1—C8—C583.0 (3)C16—N5—C17—C1897.2 (3)
C4—C5—C8—N1141.1 (3)N5—C17—C18—C2311.5 (4)
C6—C5—C8—N141.4 (3)N5—C17—C18—C19171.8 (2)
C8—N1—C9—O37.0 (4)C23—C18—C19—C201.0 (4)
C8—N1—C9—C10171.5 (2)C17—C18—C19—C20175.9 (3)
C14—N2—C10—C112.0 (4)C18—C19—C20—C210.5 (4)
C14—N2—C10—C9174.3 (2)C19—C20—C21—C220.2 (5)
O3—C9—C10—N2173.4 (2)C20—C21—C22—C230.4 (5)
N1—C9—C10—N25.1 (3)C19—C18—C23—C220.8 (4)
O3—C9—C10—C113.1 (4)C17—C18—C23—C22176.0 (3)
N1—C9—C10—C11178.5 (2)C21—C22—C23—C180.1 (5)
N2—C10—C11—C121.8 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H91···O1i0.892.172.904 (3)140
N3—H93···O3ii0.891.922.762 (3)158
N4—H94A···O2iii0.971.922.894 (3)177
N4—H94B···O2i0.902.062.934 (3)167
N5—H95···O1iii0.862.032.863 (3)162
Symmetry codes: (i) x1, y, z; (ii) x1/2, y+1/2, z+1/2; (iii) x+2, y+1, z+1.
(II) N-[2-(benzylaminocarbonyl)ethyl]-N'-{6-[(4- carboxylatobenzyl)aminocarbonyl]-2-pyridylmethyl}guanidinium monohydrate top
Crystal data top
C26H28N6O4·H2OZ = 2
Mr = 506.56F(000) = 536
Triclinic, P1Dx = 1.308 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 11.0848 (9) ÅCell parameters from 98818 reflections
b = 11.5591 (7) Åθ = 2.9–27.5°
c = 11.9676 (11) ŵ = 0.09 mm1
α = 99.956 (5)°T = 120 K
β = 98.908 (3)°Prism, colourless
γ = 117.818 (4)°0.2 × 0.17 × 0.06 mm
V = 1286.03 (18) Å3
Data collection top
Bruker–Nonius KappaCCD
diffractometer
5835 independent reflections
Radiation source: Bruker Nonius FR591 Rotating Anode4304 reflections with I > 2σ(I)
10cm confocal mirrors monochromatorRint = 0.049
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.1°
ϕ & ω scans to fill the asymmetric unith = 1414
Absorption correction: multi-scan
(SADABS; Sheldrick, 2003)
k = 1515
Tmin = 0.982, Tmax = 0.994l = 1515
20604 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.077Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.12 w = 1/[σ2(Fo2) + (0.021P)2 + 1.6724P]
where P = (Fo2 + 2Fc2)/3
5835 reflections(Δ/σ)max < 0.001
334 parametersΔρmax = 0.31 e Å3
3 restraintsΔρmin = 0.24 e Å3
Crystal data top
C26H28N6O4·H2Oγ = 117.818 (4)°
Mr = 506.56V = 1286.03 (18) Å3
Triclinic, P1Z = 2
a = 11.0848 (9) ÅMo Kα radiation
b = 11.5591 (7) ŵ = 0.09 mm1
c = 11.9676 (11) ÅT = 120 K
α = 99.956 (5)°0.2 × 0.17 × 0.06 mm
β = 98.908 (3)°
Data collection top
Bruker–Nonius KappaCCD
diffractometer
5835 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 2003)
4304 reflections with I > 2σ(I)
Tmin = 0.982, Tmax = 0.994Rint = 0.049
20604 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0773 restraints
wR(F2) = 0.145H-atom parameters constrained
S = 1.12Δρmax = 0.31 e Å3
5835 reflectionsΔρmin = 0.24 e Å3
334 parameters
Special details top

Experimental. SADABS was used to perform the Absorption correction Parameter refinement on 17133 reflections reduced R(int) from 0.1329 to 0.0460 Ratio of minimum to maximum apparent transmission: 0.653021 The given Tmin and Tmax were generated using the SHELX SIZE command

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.

[O1, O2, C1 > C7; 0.057; O1 =-0.111 (2) Å] [N1, N2, O3, C9 > C14; 0.036; C10 = -0.059 (2) Å] [N3, N4, N5,C16; 0.004; C16 = 0.006 (2) Å] [C18, C19, N6, O4; 0.007; C19 = -0.012 (2) Å] [C21> C26; 0.002; C26 = -0.004 (2) Å]

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.93390 (18)0.24852 (18)0.18249 (15)0.0291 (4)
O20.95992 (19)0.31392 (18)0.01815 (17)0.0330 (4)
O30.41538 (19)0.30624 (19)0.41625 (16)0.0323 (4)
O40.52503 (19)0.52348 (18)0.30600 (15)0.0297 (4)
N10.2870 (2)0.2710 (2)0.29848 (18)0.0241 (5)
H10.21940.25230.29320.029*
N20.0828 (2)0.3245 (2)0.48999 (18)0.0224 (4)
N30.1416 (2)0.3363 (2)0.43571 (18)0.0256 (5)
H30.07180.33740.39060.031*
N40.3476 (2)0.3298 (2)0.45022 (18)0.0272 (5)
H4A0.40680.31630.41650.033*
H4B0.36480.35110.52750.033*
N50.2005 (2)0.2865 (2)0.26816 (18)0.0274 (5)
H50.12070.27910.23220.033*
N60.4363 (2)0.6172 (2)0.19247 (19)0.0291 (5)
H60.37430.60370.12880.035*
C10.8961 (3)0.2312 (2)0.0737 (2)0.0244 (5)
C20.7599 (3)0.1018 (2)0.0019 (2)0.0225 (5)
C30.7016 (3)0.0832 (3)0.1158 (2)0.0266 (6)
H3A0.74830.15170.15290.032*
C40.5752 (3)0.0352 (3)0.1796 (2)0.0265 (6)
H40.53590.04680.25990.032*
C50.5062 (2)0.1366 (2)0.1269 (2)0.0227 (5)
C60.5654 (3)0.1186 (2)0.0098 (2)0.0243 (5)
H6A0.51960.18790.02690.029*
C70.6909 (3)0.0000 (2)0.0544 (2)0.0250 (5)
H70.72980.01150.13470.030*
C80.3723 (3)0.2706 (2)0.1928 (2)0.0248 (5)
H8A0.31250.29890.13820.030*
H8B0.39900.34030.21520.030*
C90.3101 (3)0.2994 (2)0.4039 (2)0.0257 (5)
C100.1971 (2)0.3290 (2)0.5095 (2)0.0231 (5)
C110.2091 (3)0.3678 (3)0.6208 (2)0.0286 (6)
H110.29170.36920.63130.034*
C120.0985 (3)0.4047 (3)0.7172 (2)0.0328 (6)
H120.10360.43250.79490.039*
C130.0191 (3)0.4005 (2)0.6984 (2)0.0261 (5)
H130.09630.42500.76290.031*
C140.0228 (2)0.3596 (2)0.5833 (2)0.0220 (5)
C150.1495 (3)0.3540 (3)0.5598 (2)0.0250 (5)
H15A0.23730.43950.60670.030*
H15B0.15220.27720.58360.030*
C160.2328 (3)0.3182 (2)0.3849 (2)0.0230 (5)
C170.2822 (3)0.2627 (3)0.1935 (2)0.0264 (6)
H17A0.22170.17270.13430.032*
H17B0.36210.26110.24190.032*
C180.3393 (3)0.3726 (3)0.1312 (2)0.0272 (6)
H18A0.25940.37500.08380.033*
H18B0.38920.35060.07680.033*
C190.4406 (3)0.5116 (3)0.2181 (2)0.0251 (5)
C200.5333 (3)0.7555 (3)0.2686 (2)0.0323 (6)
H20A0.52740.75680.35050.039*
H20B0.50170.81670.24430.039*
C210.6865 (3)0.8112 (3)0.2671 (2)0.0299 (6)
C220.7891 (3)0.9325 (3)0.3518 (3)0.0397 (7)
H220.76220.97640.40920.048*
C230.9306 (4)0.9888 (3)0.3518 (3)0.0501 (9)
H231.00001.07110.40990.060*
C240.9720 (3)0.9273 (3)0.2689 (3)0.0466 (8)
H241.06890.96680.26950.056*
C250.8705 (3)0.8073 (3)0.1850 (3)0.0382 (7)
H250.89760.76410.12720.046*
C260.7302 (3)0.7503 (3)0.1849 (2)0.0321 (6)
H260.66170.66720.12720.038*
O1W0.19025 (19)0.54508 (18)0.00970 (16)0.0317 (4)
H1W0.12570.47100.01860.048*
H2W0.15440.59620.00790.048*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0222 (9)0.0326 (10)0.0229 (10)0.0121 (8)0.0035 (7)0.0006 (7)
O20.0259 (10)0.0290 (10)0.0354 (11)0.0085 (8)0.0040 (8)0.0087 (8)
O30.0249 (10)0.0433 (11)0.0310 (11)0.0213 (9)0.0058 (8)0.0054 (8)
O40.0242 (10)0.0342 (10)0.0241 (10)0.0131 (8)0.0022 (8)0.0056 (8)
N10.0169 (10)0.0288 (11)0.0224 (11)0.0120 (9)0.0004 (8)0.0013 (9)
N20.0190 (10)0.0221 (10)0.0208 (11)0.0089 (8)0.0014 (8)0.0018 (8)
N30.0208 (11)0.0363 (12)0.0194 (11)0.0164 (9)0.0007 (9)0.0056 (9)
N40.0219 (11)0.0414 (13)0.0184 (11)0.0191 (10)0.0025 (9)0.0020 (9)
N50.0198 (11)0.0392 (12)0.0204 (11)0.0163 (10)0.0009 (9)0.0022 (9)
N60.0278 (12)0.0327 (12)0.0224 (11)0.0151 (10)0.0014 (9)0.0053 (9)
C10.0182 (12)0.0265 (13)0.0280 (14)0.0137 (10)0.0022 (10)0.0031 (10)
C20.0197 (12)0.0243 (12)0.0232 (13)0.0129 (10)0.0022 (10)0.0036 (10)
C30.0258 (13)0.0285 (13)0.0228 (13)0.0133 (11)0.0029 (11)0.0056 (10)
C40.0247 (13)0.0307 (13)0.0203 (13)0.0140 (11)0.0000 (10)0.0042 (10)
C50.0175 (12)0.0253 (12)0.0227 (13)0.0112 (10)0.0024 (10)0.0021 (10)
C60.0243 (13)0.0251 (12)0.0234 (13)0.0132 (10)0.0039 (10)0.0065 (10)
C70.0244 (13)0.0286 (13)0.0204 (13)0.0146 (11)0.0017 (10)0.0032 (10)
C80.0212 (13)0.0282 (13)0.0219 (13)0.0120 (10)0.0023 (10)0.0048 (10)
C90.0200 (13)0.0236 (12)0.0297 (14)0.0104 (10)0.0038 (11)0.0034 (10)
C100.0172 (12)0.0231 (12)0.0250 (13)0.0094 (10)0.0020 (10)0.0032 (10)
C110.0226 (13)0.0348 (14)0.0266 (14)0.0145 (11)0.0074 (11)0.0041 (11)
C120.0359 (16)0.0391 (15)0.0200 (13)0.0187 (13)0.0060 (12)0.0027 (11)
C130.0241 (13)0.0295 (13)0.0202 (13)0.0126 (11)0.0011 (10)0.0036 (10)
C140.0198 (12)0.0200 (12)0.0221 (13)0.0086 (10)0.0026 (10)0.0037 (9)
C150.0221 (13)0.0297 (13)0.0196 (13)0.0133 (11)0.0006 (10)0.0024 (10)
C160.0181 (12)0.0210 (12)0.0224 (13)0.0067 (10)0.0013 (10)0.0020 (10)
C170.0232 (13)0.0309 (13)0.0209 (13)0.0140 (11)0.0018 (10)0.0005 (10)
C180.0233 (13)0.0321 (14)0.0200 (13)0.0137 (11)0.0013 (10)0.0007 (10)
C190.0213 (13)0.0329 (14)0.0214 (13)0.0146 (11)0.0050 (10)0.0065 (10)
C200.0349 (16)0.0334 (15)0.0300 (15)0.0197 (12)0.0062 (12)0.0073 (12)
C210.0347 (15)0.0276 (13)0.0227 (13)0.0130 (12)0.0025 (11)0.0089 (11)
C220.0429 (18)0.0311 (15)0.0334 (16)0.0140 (13)0.0024 (14)0.0039 (12)
C230.0422 (19)0.0317 (16)0.046 (2)0.0021 (14)0.0032 (15)0.0043 (14)
C240.0311 (17)0.0451 (18)0.050 (2)0.0088 (14)0.0059 (15)0.0180 (15)
C250.0381 (17)0.0410 (16)0.0326 (16)0.0174 (14)0.0065 (13)0.0144 (13)
C260.0347 (15)0.0306 (14)0.0229 (14)0.0130 (12)0.0006 (12)0.0060 (11)
O1W0.0261 (10)0.0336 (10)0.0330 (11)0.0134 (8)0.0046 (8)0.0118 (8)
Geometric parameters (Å, º) top
O1—C11.254 (3)C8—H8B0.9900
O2—C11.261 (3)C9—C101.497 (3)
O3—C91.235 (3)C10—C111.378 (3)
O4—C191.236 (3)C11—C121.385 (4)
N1—C91.342 (3)C11—H110.9500
N1—C81.455 (3)C12—C131.378 (4)
N1—H10.8794C12—H120.9500
N2—C141.333 (3)C13—C141.390 (3)
N2—C101.346 (3)C13—H130.9500
N3—C161.333 (3)C14—C151.502 (3)
N3—C151.446 (3)C15—H15A0.9900
N3—H30.8789C15—H15B0.9900
N4—C161.320 (3)C17—C181.515 (4)
N4—H4A0.8796C17—H17A0.9900
N4—H4B0.8804C17—H17B0.9900
N5—C161.327 (3)C18—C191.517 (3)
N5—C171.447 (3)C18—H18A0.9900
N5—H50.8796C18—H18B0.9900
N6—C191.329 (3)C20—C211.513 (4)
N6—C201.459 (3)C20—H20A0.9900
N6—H60.8797C20—H20B0.9900
C1—C21.517 (3)C21—C261.387 (4)
C2—C71.389 (3)C21—C221.396 (4)
C2—C31.390 (3)C22—C231.389 (5)
C3—C41.391 (3)C22—H220.9500
C3—H3A0.9500C23—C241.380 (5)
C4—C51.387 (3)C23—H230.9500
C4—H40.9500C24—C251.382 (4)
C5—C61.388 (3)C24—H240.9500
C5—C81.514 (3)C25—C261.377 (4)
C6—C71.389 (3)C25—H250.9500
C6—H6A0.9500C26—H260.9500
C7—H70.9500O1W—H1W0.8601
C8—H8A0.9900O1W—H2W0.8536
C9—N1—C8120.9 (2)C12—C13—C14118.8 (2)
C9—N1—H1119.5C12—C13—H13120.6
C8—N1—H1119.6C14—C13—H13120.6
C14—N2—C10117.9 (2)N2—C14—C13122.7 (2)
C16—N3—C15124.6 (2)N2—C14—C15117.1 (2)
C16—N3—H3117.7C13—C14—C15120.1 (2)
C15—N3—H3117.7N3—C15—C14109.7 (2)
C16—N4—H4A120.0N3—C15—H15A109.7
C16—N4—H4B119.9C14—C15—H15A109.7
H4A—N4—H4B120.1N3—C15—H15B109.7
C16—N5—C17127.1 (2)C14—C15—H15B109.7
C16—N5—H5116.5H15A—C15—H15B108.2
C17—N5—H5116.4N4—C16—N5123.1 (2)
C19—N6—C20120.8 (2)N4—C16—N3120.1 (2)
C19—N6—H6119.6N5—C16—N3116.8 (2)
C20—N6—H6119.5N5—C17—C18111.0 (2)
O1—C1—O2125.7 (2)N5—C17—H17A109.4
O1—C1—C2117.9 (2)C18—C17—H17A109.4
O2—C1—C2116.4 (2)N5—C17—H17B109.4
C7—C2—C3119.0 (2)C18—C17—H17B109.4
C7—C2—C1119.7 (2)H17A—C17—H17B108.0
C3—C2—C1121.2 (2)C17—C18—C19111.5 (2)
C2—C3—C4120.4 (2)C17—C18—H18A109.3
C2—C3—H3A119.8C19—C18—H18A109.3
C4—C3—H3A119.8C17—C18—H18B109.3
C5—C4—C3120.5 (2)C19—C18—H18B109.3
C5—C4—H4119.7H18A—C18—H18B108.0
C3—C4—H4119.7O4—C19—N6122.9 (2)
C4—C5—C6119.0 (2)O4—C19—C18120.1 (2)
C4—C5—C8123.2 (2)N6—C19—C18116.9 (2)
C6—C5—C8117.7 (2)N6—C20—C21114.5 (2)
C5—C6—C7120.6 (2)N6—C20—H20A108.6
C5—C6—H6A119.7C21—C20—H20A108.6
C7—C6—H6A119.7N6—C20—H20B108.6
C2—C7—C6120.5 (2)C21—C20—H20B108.6
C2—C7—H7119.8H20A—C20—H20B107.6
C6—C7—H7119.8C26—C21—C22118.3 (3)
N1—C8—C5116.3 (2)C26—C21—C20123.8 (2)
N1—C8—H8A108.2C22—C21—C20118.0 (3)
C5—C8—H8A108.2C23—C22—C21119.9 (3)
N1—C8—H8B108.2C23—C22—H22120.1
C5—C8—H8B108.2C21—C22—H22120.1
H8A—C8—H8B107.4C24—C23—C22121.1 (3)
O3—C9—N1123.2 (2)C24—C23—H23119.5
O3—C9—C10120.3 (2)C22—C23—H23119.5
N1—C9—C10116.4 (2)C23—C24—C25119.1 (3)
N2—C10—C11122.9 (2)C23—C24—H24120.4
N2—C10—C9117.3 (2)C25—C24—H24120.4
C11—C10—C9119.6 (2)C26—C25—C24120.2 (3)
C10—C11—C12118.7 (2)C26—C25—H25119.9
C10—C11—H11120.6C24—C25—H25119.9
C12—C11—H11120.6C25—C26—C21121.5 (3)
C13—C12—C11118.9 (2)C25—C26—H26119.2
C13—C12—H12120.5C21—C26—H26119.2
C11—C12—H12120.5H1W—O1W—H2W105.4
O1—C1—C2—C77.8 (3)C10—N2—C14—C130.2 (3)
O2—C1—C2—C7173.8 (2)C10—N2—C14—C15180.0 (2)
O1—C1—C2—C3171.7 (2)C12—C13—C14—N20.2 (4)
O2—C1—C2—C36.7 (3)C12—C13—C14—C15179.9 (2)
C7—C2—C3—C40.6 (4)C16—N3—C15—C14175.2 (2)
C1—C2—C3—C4178.9 (2)N2—C14—C15—N311.4 (3)
C2—C3—C4—C50.4 (4)C13—C14—C15—N3168.4 (2)
C3—C4—C5—C60.4 (4)C17—N5—C16—N41.5 (4)
C3—C4—C5—C8177.0 (2)C17—N5—C16—N3179.7 (2)
C4—C5—C6—C70.9 (4)C15—N3—C16—N47.1 (4)
C8—C5—C6—C7177.7 (2)C15—N3—C16—N5171.8 (2)
C3—C2—C7—C60.1 (4)C16—N5—C17—C18113.2 (3)
C1—C2—C7—C6179.4 (2)N5—C17—C18—C1962.8 (3)
C5—C6—C7—C20.6 (4)C20—N6—C19—O40.0 (4)
C9—N1—C8—C589.2 (3)C20—N6—C19—C18177.8 (2)
C4—C5—C8—N123.5 (4)C17—C18—C19—O439.2 (3)
C6—C5—C8—N1159.8 (2)C17—C18—C19—N6143.0 (2)
C8—N1—C9—O311.3 (4)C19—N6—C20—C2169.6 (3)
C8—N1—C9—C10166.2 (2)N6—C20—C21—C2612.2 (4)
C14—N2—C10—C110.0 (3)N6—C20—C21—C22169.2 (2)
C14—N2—C10—C9175.6 (2)C26—C21—C22—C230.2 (4)
O3—C9—C10—N2177.6 (2)C20—C21—C22—C23178.5 (3)
N1—C9—C10—N20.1 (3)C21—C22—C23—C240.3 (5)
O3—C9—C10—C111.8 (4)C22—C23—C24—C250.2 (5)
N1—C9—C10—C11175.7 (2)C23—C24—C25—C260.3 (5)
N2—C10—C11—C120.4 (4)C24—C25—C26—C210.7 (4)
C9—C10—C11—C12175.1 (2)C22—C21—C26—C250.7 (4)
C10—C11—C12—C130.4 (4)C20—C21—C26—C25178.0 (3)
C11—C12—C13—C140.2 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.882.323.084 (3)145
N3—H3···O1i0.882.463.180 (3)139
N4—H4A···O3ii0.882.032.847 (3)154
N4—H4B···O4iii0.882.042.856 (3)154
N5—H5···O1i0.881.912.770 (3)167
N6—H6···O1W0.882.032.884 (3)163
O1W—H1W···O2i0.861.882.734 (3)169
O1W—H2W···O2iv0.852.002.844 (3)170
Symmetry codes: (i) x1, y, z; (ii) x+1, y, z; (iii) x+1, y+1, z+1; (iv) x+1, y+1, z.

Experimental details

(I)(II)
Crystal data
Chemical formulaC23H23N5O3C26H28N6O4·H2O
Mr417.46506.56
Crystal system, space groupMonoclinic, P21/nTriclinic, P1
Temperature (K)120120
a, b, c (Å)8.1826 (3), 18.1530 (7), 13.4723 (4)11.0848 (9), 11.5591 (7), 11.9676 (11)
α, β, γ (°)90, 92.601 (2), 9099.956 (5), 98.908 (3), 117.818 (4)
V3)1999.10 (12)1286.03 (18)
Z42
Radiation typeMo KαMo Kα
µ (mm1)0.100.09
Crystal size (mm)0.15 × 0.1 × 0.10.2 × 0.17 × 0.06
Data collection
DiffractometerBruker–Nonius KappaCCD
diffractometer
Bruker–Nonius KappaCCD
diffractometer
Absorption correctionMulti-scan
(SADABS; Sheldrick, 2003)
Multi-scan
(SADABS; Sheldrick, 2003)
Tmin, Tmax0.986, 0.9910.982, 0.994
No. of measured, independent and
observed [I > 2σ(I)] reflections
16252, 3519, 2719 20604, 5835, 4304
Rint0.0780.049
(sin θ/λ)max1)0.5950.649
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.060, 0.132, 1.08 0.077, 0.145, 1.12
No. of reflections35195835
No. of parameters280334
No. of restraints03
H-atom treatmentH-atom parameters constrainedH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.27, 0.280.31, 0.24

Computer programs: , DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), CrystalMaker (CrystalMaker, 2005), WinGX (Farrugia, 1999) and publCIF (Westrip, 2010).

Hydrogen-bond geometry (Å, º) for (I) top
D—H···AD—HH···AD···AD—H···A
N1—H91···O1i0.892.172.904 (3)139.5
N3—H93···O3ii0.891.922.762 (3)157.8
N4—H94A···O2iii0.971.922.894 (3)176.5
N4—H94B···O2i0.902.062.934 (3)166.5
N5—H95···O1iii0.862.032.863 (3)161.5
Symmetry codes: (i) x1, y, z; (ii) x1/2, y+1/2, z+1/2; (iii) x+2, y+1, z+1.
Hydrogen-bond geometry (Å, º) for (II) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.882.323.084 (3)145.0
N3—H3···O1i0.882.463.180 (3)139.1
N4—H4A···O3ii0.882.032.847 (3)154.3
N4—H4B···O4iii0.882.042.856 (3)153.9
N5—H5···O1i0.881.912.770 (3)167.3
N6—H6···O1W0.882.032.884 (3)162.8
O1W—H1W···O2i0.861.882.734 (3)168.9
O1W—H2W···O2iv0.852.002.844 (3)169.5
Symmetry codes: (i) x1, y, z; (ii) x+1, y, z; (iii) x+1, y+1, z+1; (iv) x+1, y+1, z.
 

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