The crystal structures of 6-aminothiocytosine (systematic name: 4,6-diamino-1,2-dihydropyrimidine-2-thione, DAPMT, C
4H
6N
4S), its hemihydrate (0.5H
2O) and its dimethylformamide (DMF, C
3H
7NO) monosolvate were compared, and the influence of the type of solvent on the supramolecular motifs was analysed. In all three crystal structures, there are two symmetry-independent molecules (
A and
B), and these molecules are connected by three relatively short and directional hydrogen bonds to form chains of alternating
A and
B molecules. A further organization of these chains is dependent on the nature of the solvent molecule. In the unsolvated form, two orientations of the neighbouring chains are observed, and similar motifs – but only one per structure – can be observed in the solvated structures. These two different motifs can be connected by two different kinds of contacts,
i.e. either π–π (hemihydrate) or staple-supported S
S (DMF). In the crystal structures, the O atoms of the solvent molecules are double acceptors of the same type of hydrogen bonds and bind the chains of DAPMT molecules into different motifs (dimeric or infinite chains). A Hirshfeld fingerprint analysis was used for visualization and additional interpretation of these results.
Supporting information
CCDC references: 1982224; 1982223
For both structures, data collection: CrysAlis PRO (Rigaku OD, 2019); cell refinement: CrysAlis PRO (Rigaku OD, 2019); data reduction: CrysAlis PRO (Rigaku OD, 2019); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015b); molecular graphics: Mercury (Macrae et al., 2020) and ORTEP-3 (Farrugia, 2012); software used to prepare material for publication: SHELXL2013 (Sheldrick, 2015b).
4,6-Diamino-1,2-dihydropyrimidine-2-thione (1)
top
Crystal data top
C4H6N4S | F(000) = 592 |
Mr = 142.19 | Dx = 1.549 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
a = 9.7038 (3) Å | Cell parameters from 6420 reflections |
b = 10.5386 (1) Å | θ = 5.6–75.3° |
c = 15.3898 (4) Å | µ = 3.95 mm−1 |
β = 129.196 (4)° | T = 130 K |
V = 1219.70 (9) Å3 | Block, colourless |
Z = 8 | 0.02 × 0.01 × 0.01 mm |
Data collection top
Rigaku OD SuperNova Single source diffractometer with an Atlas detector | 2498 independent reflections |
Radiation source: SuperNova (Cu) X-ray Source | 2411 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.027 |
Detector resolution: 10.5357 pixels mm-1 | θmax = 75.6°, θmin = 5.6° |
ω scans | h = −10→12 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2019) | k = −12→13 |
Tmin = 0.586, Tmax = 1.000 | l = −19→17 |
8624 measured reflections | |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | All H-atom parameters refined |
wR(F2) = 0.104 | w = 1/[σ2(Fo2) + (0.0546P)2 + 0.5044P] where P = (Fo2 + 2Fc2)/3 |
S = 1.13 | (Δ/σ)max < 0.001 |
2498 reflections | Δρmax = 0.21 e Å−3 |
211 parameters | Δρmin = −0.30 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. X-ray diffraction data were collected on a Rigaku OD
four-circle Supernova diffractometer using monochromatic CuKα radiation (λ
= 1.54178 Å). The temperature was controlled with an Oxford Instruments
Cryosystem device. The data were corrected
for absorption (multi-scan) (Rigaku OD, 2018). Accurate unit-cell
parameters were determined by a least-squares fit of the reflections of the
highest intensity, which were chosen from the whole experiment. The
calculations were mainly performed within the WinGX program system (Farrugia,
2012) and OLEX2 (Dolomanov et al., 2009). The structures were solved
with SHELXT (Sheldrick, 2015a)/SIR92 (Altomare et al., 1993). |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1A | 0.3943 (2) | 0.38250 (16) | 0.28201 (13) | 0.0331 (3) | |
H1A | 0.499 (4) | 0.361 (3) | 0.314 (2) | 0.045 (7)* | |
C2A | 0.3083 (2) | 0.33101 (17) | 0.31767 (15) | 0.0301 (4) | |
S2A | 0.41562 (6) | 0.21611 (5) | 0.41853 (4) | 0.03527 (15) | |
N3A | 0.1460 (2) | 0.37011 (16) | 0.27509 (13) | 0.0349 (3) | |
C4A | 0.0669 (2) | 0.46044 (18) | 0.19339 (16) | 0.0359 (4) | |
N4A | −0.0939 (3) | 0.4988 (2) | 0.1556 (2) | 0.0580 (6) | |
H4A1 | −0.146 (4) | 0.558 (3) | 0.109 (3) | 0.070 (9)* | |
H4A2 | −0.143 (4) | 0.458 (3) | 0.175 (2) | 0.053 (7)* | |
C5A | 0.1479 (2) | 0.51154 (19) | 0.15197 (16) | 0.0372 (4) | |
H5A | 0.089 (3) | 0.577 (3) | 0.093 (2) | 0.049 (7)* | |
C6A | 0.3187 (2) | 0.47335 (18) | 0.20079 (15) | 0.0343 (4) | |
N6A | 0.4195 (3) | 0.5231 (2) | 0.17719 (18) | 0.0496 (5) | |
H6A1 | 0.510 (4) | 0.480 (3) | 0.190 (2) | 0.054 (7)* | |
H6A2 | 0.375 (4) | 0.580 (3) | 0.129 (3) | 0.064 (9)* | |
N1B | 0.0216 (2) | 0.33392 (15) | 0.41027 (13) | 0.0316 (3) | |
H1B | 0.055 (3) | 0.336 (2) | 0.373 (2) | 0.044 (6)* | |
C2B | −0.1562 (2) | 0.32697 (17) | 0.35684 (15) | 0.0309 (4) | |
S2B | −0.29893 (6) | 0.31236 (5) | 0.21430 (4) | 0.03871 (16) | |
N3B | −0.2159 (2) | 0.32809 (15) | 0.41436 (13) | 0.0321 (3) | |
C4B | −0.0950 (2) | 0.34083 (17) | 0.52799 (15) | 0.0317 (4) | |
N4B | −0.1626 (3) | 0.3427 (2) | 0.58142 (17) | 0.0441 (4) | |
H4B1 | −0.268 (4) | 0.322 (3) | 0.543 (2) | 0.054 (8)* | |
H4B2 | −0.099 (4) | 0.341 (3) | 0.649 (2) | 0.049 (7)* | |
C5B | 0.0868 (2) | 0.35283 (19) | 0.58554 (15) | 0.0331 (4) | |
H5B | 0.170 (3) | 0.364 (2) | 0.663 (2) | 0.041 (6)* | |
C6B | 0.1461 (2) | 0.34743 (17) | 0.52414 (14) | 0.0309 (4) | |
N6B | 0.3156 (2) | 0.3559 (2) | 0.56732 (16) | 0.0433 (4) | |
H6B1 | 0.343 (4) | 0.332 (3) | 0.529 (2) | 0.047 (7)* | |
H6B2 | 0.394 (4) | 0.350 (3) | 0.637 (3) | 0.054 (7)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1A | 0.0254 (7) | 0.0419 (8) | 0.0340 (8) | 0.0001 (6) | 0.0197 (6) | 0.0023 (6) |
C2A | 0.0263 (8) | 0.0362 (9) | 0.0300 (8) | −0.0033 (6) | 0.0188 (7) | −0.0046 (7) |
S2A | 0.0301 (2) | 0.0421 (3) | 0.0359 (3) | 0.00286 (17) | 0.0220 (2) | 0.00540 (17) |
N3A | 0.0283 (7) | 0.0419 (8) | 0.0369 (8) | 0.0015 (6) | 0.0218 (6) | 0.0009 (6) |
C4A | 0.0298 (9) | 0.0376 (9) | 0.0384 (9) | 0.0007 (7) | 0.0207 (8) | −0.0002 (7) |
N4A | 0.0382 (10) | 0.0642 (13) | 0.0754 (14) | 0.0178 (9) | 0.0377 (10) | 0.0284 (11) |
C5A | 0.0333 (9) | 0.0373 (9) | 0.0393 (10) | 0.0010 (7) | 0.0222 (8) | 0.0035 (8) |
C6A | 0.0332 (9) | 0.0382 (9) | 0.0343 (9) | −0.0037 (7) | 0.0226 (8) | −0.0012 (7) |
N6A | 0.0455 (10) | 0.0579 (11) | 0.0586 (11) | 0.0066 (9) | 0.0392 (10) | 0.0179 (9) |
N1B | 0.0254 (7) | 0.0434 (8) | 0.0290 (7) | −0.0003 (6) | 0.0186 (6) | −0.0016 (6) |
C2B | 0.0276 (8) | 0.0343 (9) | 0.0301 (9) | −0.0013 (6) | 0.0179 (7) | −0.0021 (6) |
S2B | 0.0279 (2) | 0.0592 (3) | 0.0271 (2) | −0.00483 (18) | 0.0164 (2) | −0.00578 (18) |
N3B | 0.0268 (7) | 0.0424 (8) | 0.0299 (7) | −0.0020 (6) | 0.0192 (6) | −0.0011 (6) |
C4B | 0.0332 (9) | 0.0346 (9) | 0.0300 (8) | 0.0002 (7) | 0.0212 (8) | 0.0014 (7) |
N4B | 0.0373 (10) | 0.0689 (12) | 0.0320 (9) | −0.0046 (8) | 0.0247 (8) | −0.0011 (8) |
C5B | 0.0295 (9) | 0.0405 (9) | 0.0257 (8) | 0.0013 (7) | 0.0157 (7) | 0.0014 (7) |
C6B | 0.0247 (8) | 0.0340 (9) | 0.0295 (8) | 0.0018 (6) | 0.0150 (7) | 0.0006 (6) |
N6B | 0.0264 (8) | 0.0653 (11) | 0.0344 (9) | 0.0024 (7) | 0.0174 (8) | −0.0030 (8) |
Geometric parameters (Å, º) top
N1A—C6A | 1.363 (2) | N1B—C2B | 1.366 (2) |
N1A—C2A | 1.368 (2) | N1B—C6B | 1.369 (2) |
N1A—H1A | 0.83 (3) | N1B—H1B | 0.82 (3) |
C2A—N3A | 1.332 (2) | C2B—N3B | 1.329 (2) |
C2A—S2A | 1.7080 (19) | C2B—S2B | 1.7069 (18) |
N3A—C4A | 1.363 (3) | N3B—C4B | 1.364 (2) |
C4A—N4A | 1.338 (3) | C4B—N4B | 1.337 (2) |
C4A—C5A | 1.395 (3) | C4B—C5B | 1.392 (3) |
N4A—H4A1 | 0.84 (3) | N4B—H4B1 | 0.82 (3) |
N4A—H4A2 | 0.82 (3) | N4B—H4B2 | 0.81 (3) |
C5A—C6A | 1.378 (3) | C5B—C6B | 1.383 (3) |
C5A—H5A | 0.98 (3) | C5B—H5B | 0.94 (3) |
C6A—N6A | 1.346 (3) | C6B—N6B | 1.332 (2) |
N6A—H6A1 | 0.89 (3) | N6B—H6B1 | 0.83 (3) |
N6A—H6A2 | 0.83 (3) | N6B—H6B2 | 0.84 (3) |
| | | |
C6A—N1A—C2A | 122.34 (16) | C2B—N1B—C6B | 122.20 (15) |
C6A—N1A—H1A | 118.7 (18) | C2B—N1B—H1B | 119.4 (18) |
C2A—N1A—H1A | 118.8 (18) | C6B—N1B—H1B | 118.3 (18) |
N3A—C2A—N1A | 120.76 (17) | N3B—C2B—N1B | 121.00 (16) |
N3A—C2A—S2A | 121.22 (14) | N3B—C2B—S2B | 121.03 (14) |
N1A—C2A—S2A | 118.01 (13) | N1B—C2B—S2B | 117.94 (13) |
C2A—N3A—C4A | 118.12 (16) | C2B—N3B—C4B | 118.08 (15) |
N4A—C4A—N3A | 115.72 (19) | N4B—C4B—N3B | 115.54 (17) |
N4A—C4A—C5A | 121.61 (19) | N4B—C4B—C5B | 121.62 (18) |
N3A—C4A—C5A | 122.66 (17) | N3B—C4B—C5B | 122.84 (16) |
C4A—N4A—H4A1 | 120 (2) | C4B—N4B—H4B1 | 115 (2) |
C4A—N4A—H4A2 | 118 (2) | C4B—N4B—H4B2 | 121.6 (19) |
H4A1—N4A—H4A2 | 122 (3) | H4B1—N4B—H4B2 | 120 (3) |
C6A—C5A—C4A | 117.96 (18) | C6B—C5B—C4B | 117.94 (16) |
C6A—C5A—H5A | 120.1 (15) | C6B—C5B—H5B | 118.9 (15) |
C4A—C5A—H5A | 121.9 (15) | C4B—C5B—H5B | 123.1 (15) |
N6A—C6A—N1A | 117.32 (17) | N6B—C6B—N1B | 117.25 (17) |
N6A—C6A—C5A | 124.59 (19) | N6B—C6B—C5B | 124.88 (17) |
N1A—C6A—C5A | 118.03 (17) | N1B—C6B—C5B | 117.87 (16) |
C6A—N6A—H6A1 | 121.4 (18) | C6B—N6B—H6B1 | 118.3 (19) |
C6A—N6A—H6A2 | 118 (2) | C6B—N6B—H6B2 | 117.9 (19) |
H6A1—N6A—H6A2 | 117 (3) | H6B1—N6B—H6B2 | 117 (3) |
| | | |
C6A—N1A—C2A—N3A | −1.3 (3) | C6B—N1B—C2B—N3B | −2.7 (3) |
C6A—N1A—C2A—S2A | 179.03 (14) | C6B—N1B—C2B—S2B | 179.11 (14) |
N1A—C2A—N3A—C4A | 1.5 (3) | N1B—C2B—N3B—C4B | 2.2 (3) |
S2A—C2A—N3A—C4A | −178.81 (14) | S2B—C2B—N3B—C4B | −179.60 (14) |
C2A—N3A—C4A—N4A | −178.28 (19) | C2B—N3B—C4B—N4B | 179.34 (18) |
C2A—N3A—C4A—C5A | 1.0 (3) | C2B—N3B—C4B—C5B | 0.1 (3) |
N4A—C4A—C5A—C6A | 175.5 (2) | N4B—C4B—C5B—C6B | 178.74 (19) |
N3A—C4A—C5A—C6A | −3.7 (3) | N3B—C4B—C5B—C6B | −2.1 (3) |
C2A—N1A—C6A—N6A | 175.89 (18) | C2B—N1B—C6B—N6B | −178.62 (18) |
C2A—N1A—C6A—C5A | −1.5 (3) | C2B—N1B—C6B—C5B | 0.6 (3) |
C4A—C5A—C6A—N6A | −173.4 (2) | C4B—C5B—C6B—N6B | −179.18 (19) |
C4A—C5A—C6A—N1A | 3.8 (3) | C4B—C5B—C6B—N1B | 1.7 (3) |
4,6-Diamino-1,2-dihydropyrimidine-2-thione dimethylformamide monosolvate (1DMF)
top
Crystal data top
C4H6N4S·C3H7NO | F(000) = 912 |
Mr = 215.28 | Dx = 1.342 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
a = 9.7682 (6) Å | Cell parameters from 2779 reflections |
b = 13.3671 (13) Å | θ = 4.2–75.4° |
c = 16.5201 (14) Å | µ = 2.55 mm−1 |
β = 99.030 (7)° | T = 130 K |
V = 2130.3 (3) Å3 | Prism, colourless |
Z = 8 | 0.2 × 0.08 × 0.08 mm |
Data collection top
Rigaku OD SuperNova Single source diffractometer with an Atlas detector | 3792 independent reflections |
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source | 2837 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.059 |
Detector resolution: 10.5357 pixels mm-1 | θmax = 67.4°, θmin = 4.3° |
ω scans | h = −11→11 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2019) | k = −15→15 |
Tmin = 0.390, Tmax = 1.000 | l = −19→19 |
9241 measured reflections | |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.087 | H-atom parameters constrained |
wR(F2) = 0.224 | w = 1/[σ2(Fo2) + (0.0945P)2 + 3.8846P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
3792 reflections | Δρmax = 0.93 e Å−3 |
257 parameters | Δρmin = −0.46 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. X-ray diffraction data were collected on a Rigaku OD
four-circle Supernova diffractometer using monochromatic CuKα radiation (λ
= 1.54178 Å). The temperature was controlled with an Oxford Instruments
Cryosystem device. The data were corrected
for absorption (multi-scan) (Rigaku OD, 2018). Accurate unit-cell
parameters were determined by a least-squares fit of the reflections of the
highest intensity, which were chosen from the whole experiment. The
calculations were mainly performed within the WinGX program system (Farrugia,
2012) and OLEX2 (Dolomanov et al., 2009). The structures were solved
with SHELXT (Sheldrick, 2015a)/SIR92 (Altomare et al., 1993). |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1A | 0.9079 (4) | 0.5445 (3) | 0.6476 (2) | 0.0375 (8) | |
H1A | 0.8355 | 0.5730 | 0.6636 | 0.045* | |
C2A | 1.0337 (5) | 0.5918 (4) | 0.6630 (3) | 0.0373 (10) | |
S2A | 1.04095 (11) | 0.70211 (9) | 0.71543 (7) | 0.0401 (3) | |
N3A | 1.1453 (4) | 0.5513 (3) | 0.6395 (2) | 0.0364 (8) | |
C4A | 1.1313 (5) | 0.4621 (4) | 0.5988 (3) | 0.0368 (10) | |
N4A | 1.2455 (4) | 0.4249 (3) | 0.5747 (3) | 0.0431 (9) | |
H4A1 | 1.3243 | 0.4578 | 0.5854 | 0.052* | |
H4A2 | 1.2417 | 0.3676 | 0.5483 | 0.052* | |
C5A | 1.0056 (5) | 0.4101 (4) | 0.5833 (3) | 0.0380 (10) | |
H5A | 0.9992 | 0.3468 | 0.5569 | 0.046* | |
C6A | 0.8911 (5) | 0.4544 (4) | 0.6080 (3) | 0.0380 (10) | |
N6A | 0.7637 (4) | 0.4126 (3) | 0.5972 (3) | 0.0424 (9) | |
H6A1 | 0.6949 | 0.4433 | 0.6153 | 0.051* | |
H6A2 | 0.7495 | 0.3547 | 0.5719 | 0.051* | |
N1B | 0.4283 (4) | 0.6223 (3) | 0.7221 (2) | 0.0381 (9) | |
H1B | 0.3452 | 0.6103 | 0.6947 | 0.046* | |
C2B | 0.5422 (5) | 0.6145 (4) | 0.6812 (3) | 0.0382 (10) | |
S2B | 0.51462 (11) | 0.58862 (10) | 0.57953 (7) | 0.0423 (3) | |
N3B | 0.6699 (4) | 0.6287 (3) | 0.7227 (2) | 0.0378 (9) | |
C4B | 0.6842 (4) | 0.6528 (4) | 0.8036 (3) | 0.0367 (10) | |
N4B | 0.8149 (4) | 0.6627 (4) | 0.8421 (2) | 0.0441 (10) | |
H4B1 | 0.8845 | 0.6536 | 0.8149 | 0.053* | |
H4B2 | 0.8310 | 0.6782 | 0.8945 | 0.053* | |
C5B | 0.5716 (5) | 0.6655 (4) | 0.8457 (3) | 0.0405 (10) | |
H5B | 0.5847 | 0.6855 | 0.9015 | 0.049* | |
C6B | 0.4403 (4) | 0.6477 (3) | 0.8028 (3) | 0.0351 (9) | |
N6B | 0.3238 (4) | 0.6506 (3) | 0.8357 (2) | 0.0416 (9) | |
H6B1 | 0.2438 | 0.6364 | 0.8055 | 0.050* | |
H6B2 | 0.3272 | 0.6667 | 0.8877 | 0.050* | |
N1C | 0.8201 (5) | 0.6217 (3) | 1.1134 (3) | 0.0455 (10) | |
C1C | 0.7863 (5) | 0.7076 (4) | 1.0751 (3) | 0.0413 (11) | |
H1C | 0.7373 | 0.7549 | 1.1026 | 0.050* | |
O1C | 0.8125 (4) | 0.7314 (3) | 1.0077 (2) | 0.0477 (8) | |
C11C | 0.9107 (7) | 0.5506 (5) | 1.0805 (5) | 0.0693 (17) | |
H11A | 1.0030 | 0.5525 | 1.1137 | 0.104* | |
H11B | 0.9176 | 0.5686 | 1.0238 | 0.104* | |
H11C | 0.8721 | 0.4831 | 1.0819 | 0.104* | |
C12C | 0.7969 (7) | 0.6057 (5) | 1.1970 (3) | 0.0619 (16) | |
H12A | 0.7400 | 0.6602 | 1.2133 | 0.093* | |
H12B | 0.8862 | 0.6042 | 1.2335 | 0.093* | |
H12C | 0.7489 | 0.5419 | 1.2005 | 0.093* | |
N1D | 0.6580 (4) | 0.1397 (3) | 0.3952 (3) | 0.0459 (10) | |
C1D | 0.7381 (5) | 0.2080 (4) | 0.4386 (3) | 0.0454 (11) | |
H1D | 0.7926 | 0.2500 | 0.4098 | 0.054* | |
O1D | 0.7467 (4) | 0.2207 (3) | 0.5124 (2) | 0.0492 (9) | |
C11D | 0.5673 (7) | 0.0796 (5) | 0.4370 (4) | 0.0662 (17) | |
H11D | 0.5084 | 0.1235 | 0.4643 | 0.099* | |
H11E | 0.6232 | 0.0372 | 0.4779 | 0.099* | |
H11F | 0.5090 | 0.0373 | 0.3971 | 0.099* | |
C12D | 0.6548 (6) | 0.1259 (5) | 0.3083 (3) | 0.0548 (14) | |
H12D | 0.7294 | 0.1650 | 0.2903 | 0.082* | |
H12E | 0.5652 | 0.1485 | 0.2788 | 0.082* | |
H12F | 0.6676 | 0.0549 | 0.2967 | 0.082* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1A | 0.0309 (18) | 0.041 (2) | 0.042 (2) | 0.0022 (16) | 0.0096 (14) | −0.0019 (17) |
C2A | 0.034 (2) | 0.045 (3) | 0.034 (2) | −0.0052 (19) | 0.0078 (16) | 0.0072 (19) |
S2A | 0.0333 (5) | 0.0423 (7) | 0.0462 (6) | −0.0012 (4) | 0.0114 (4) | −0.0045 (5) |
N3A | 0.0290 (17) | 0.044 (2) | 0.0380 (19) | 0.0019 (16) | 0.0112 (14) | 0.0009 (17) |
C4A | 0.034 (2) | 0.044 (3) | 0.034 (2) | 0.0019 (19) | 0.0098 (16) | −0.0002 (19) |
N4A | 0.0347 (19) | 0.045 (2) | 0.052 (2) | −0.0014 (17) | 0.0145 (16) | −0.0098 (19) |
C5A | 0.034 (2) | 0.043 (3) | 0.039 (2) | 0.0003 (19) | 0.0098 (17) | −0.0008 (19) |
C6A | 0.035 (2) | 0.044 (3) | 0.036 (2) | 0.0029 (19) | 0.0073 (16) | −0.0005 (19) |
N6A | 0.0336 (19) | 0.043 (2) | 0.052 (2) | −0.0062 (17) | 0.0110 (16) | −0.0083 (18) |
N1B | 0.0277 (17) | 0.051 (2) | 0.0377 (19) | −0.0002 (16) | 0.0108 (14) | −0.0004 (17) |
C2B | 0.033 (2) | 0.041 (3) | 0.043 (2) | 0.0002 (19) | 0.0133 (18) | −0.003 (2) |
S2B | 0.0337 (6) | 0.0582 (8) | 0.0367 (6) | −0.0020 (5) | 0.0105 (4) | −0.0061 (5) |
N3B | 0.0291 (18) | 0.045 (2) | 0.041 (2) | −0.0028 (16) | 0.0107 (14) | −0.0021 (17) |
C4B | 0.031 (2) | 0.041 (3) | 0.039 (2) | −0.0059 (18) | 0.0102 (17) | 0.0000 (19) |
N4B | 0.0331 (19) | 0.063 (3) | 0.038 (2) | −0.0018 (18) | 0.0094 (15) | −0.0063 (19) |
C5B | 0.035 (2) | 0.052 (3) | 0.035 (2) | −0.003 (2) | 0.0084 (17) | −0.003 (2) |
C6B | 0.032 (2) | 0.033 (2) | 0.043 (2) | −0.0020 (17) | 0.0129 (17) | 0.0002 (18) |
N6B | 0.0344 (19) | 0.054 (3) | 0.039 (2) | 0.0004 (17) | 0.0113 (15) | −0.0063 (18) |
N1C | 0.052 (2) | 0.043 (2) | 0.042 (2) | −0.0022 (19) | 0.0091 (17) | 0.0006 (18) |
C1C | 0.045 (2) | 0.041 (3) | 0.039 (2) | −0.002 (2) | 0.0071 (18) | −0.001 (2) |
O1C | 0.058 (2) | 0.049 (2) | 0.0372 (18) | 0.0023 (17) | 0.0116 (14) | 0.0020 (15) |
C11C | 0.066 (4) | 0.052 (4) | 0.093 (5) | 0.012 (3) | 0.023 (3) | 0.010 (3) |
C12C | 0.088 (4) | 0.050 (3) | 0.046 (3) | −0.015 (3) | 0.006 (3) | 0.006 (3) |
N1D | 0.052 (2) | 0.044 (2) | 0.046 (2) | −0.0093 (19) | 0.0193 (18) | −0.0008 (18) |
C1D | 0.048 (3) | 0.045 (3) | 0.046 (3) | −0.010 (2) | 0.018 (2) | 0.001 (2) |
O1D | 0.059 (2) | 0.050 (2) | 0.0416 (18) | −0.0102 (17) | 0.0167 (15) | −0.0022 (16) |
C11D | 0.072 (4) | 0.069 (4) | 0.061 (3) | −0.032 (3) | 0.020 (3) | −0.006 (3) |
C12D | 0.069 (3) | 0.048 (3) | 0.050 (3) | −0.017 (3) | 0.015 (2) | −0.005 (2) |
Geometric parameters (Å, º) top
N1A—C6A | 1.368 (6) | C5B—H5B | 0.9500 |
N1A—C2A | 1.371 (6) | C6B—N6B | 1.337 (6) |
N1A—H1A | 0.8800 | N6B—H6B1 | 0.8800 |
C2A—N3A | 1.329 (6) | N6B—H6B2 | 0.8800 |
C2A—S2A | 1.706 (5) | N1C—C1C | 1.328 (7) |
N3A—C4A | 1.365 (6) | N1C—C12C | 1.449 (7) |
C4A—N4A | 1.337 (6) | N1C—C11C | 1.460 (8) |
C4A—C5A | 1.399 (7) | C1C—O1C | 1.224 (6) |
N4A—H4A1 | 0.8800 | C1C—H1C | 0.9500 |
N4A—H4A2 | 0.8800 | C11C—H11A | 0.9800 |
C5A—C6A | 1.381 (6) | C11C—H11B | 0.9800 |
C5A—H5A | 0.9500 | C11C—H11C | 0.9800 |
C6A—N6A | 1.350 (6) | C12C—H12A | 0.9800 |
N6A—H6A1 | 0.8800 | C12C—H12B | 0.9800 |
N6A—H6A2 | 0.8800 | C12C—H12C | 0.9800 |
N1B—C6B | 1.363 (6) | N1D—C1D | 1.336 (7) |
N1B—C2B | 1.393 (6) | N1D—C12D | 1.444 (7) |
N1B—H1B | 0.8800 | N1D—C11D | 1.448 (7) |
C2B—N3B | 1.340 (6) | C1D—O1D | 1.221 (6) |
C2B—S2B | 1.694 (5) | C1D—H1D | 0.9500 |
N3B—C4B | 1.360 (6) | C11D—H11D | 0.9800 |
C4B—N4B | 1.340 (6) | C11D—H11E | 0.9800 |
C4B—C5B | 1.401 (6) | C11D—H11F | 0.9800 |
N4B—H4B1 | 0.8800 | C12D—H12D | 0.9800 |
N4B—H4B2 | 0.8800 | C12D—H12E | 0.9800 |
C5B—C6B | 1.385 (6) | C12D—H12F | 0.9800 |
| | | |
C6A—N1A—C2A | 122.1 (4) | N1B—C6B—C5B | 118.3 (4) |
C6A—N1A—H1A | 118.9 | C6B—N6B—H6B1 | 120.0 |
C2A—N1A—H1A | 118.9 | C6B—N6B—H6B2 | 120.0 |
N3A—C2A—N1A | 120.7 (5) | H6B1—N6B—H6B2 | 120.0 |
N3A—C2A—S2A | 122.0 (4) | C1C—N1C—C12C | 121.1 (5) |
N1A—C2A—S2A | 117.2 (4) | C1C—N1C—C11C | 120.4 (5) |
C2A—N3A—C4A | 118.5 (4) | C12C—N1C—C11C | 117.0 (5) |
N4A—C4A—N3A | 116.6 (4) | O1C—C1C—N1C | 125.9 (5) |
N4A—C4A—C5A | 120.7 (5) | O1C—C1C—H1C | 117.1 |
N3A—C4A—C5A | 122.7 (4) | N1C—C1C—H1C | 117.1 |
C4A—N4A—H4A1 | 120.0 | N1C—C11C—H11A | 109.5 |
C4A—N4A—H4A2 | 120.0 | N1C—C11C—H11B | 109.5 |
H4A1—N4A—H4A2 | 120.0 | H11A—C11C—H11B | 109.5 |
C6A—C5A—C4A | 117.5 (5) | N1C—C11C—H11C | 109.5 |
C6A—C5A—H5A | 121.3 | H11A—C11C—H11C | 109.5 |
C4A—C5A—H5A | 121.3 | H11B—C11C—H11C | 109.5 |
N6A—C6A—N1A | 117.8 (4) | N1C—C12C—H12A | 109.5 |
N6A—C6A—C5A | 123.8 (5) | N1C—C12C—H12B | 109.5 |
N1A—C6A—C5A | 118.5 (4) | H12A—C12C—H12B | 109.5 |
C6A—N6A—H6A1 | 120.0 | N1C—C12C—H12C | 109.5 |
C6A—N6A—H6A2 | 120.0 | H12A—C12C—H12C | 109.5 |
H6A1—N6A—H6A2 | 120.0 | H12B—C12C—H12C | 109.5 |
C6B—N1B—C2B | 122.7 (4) | C1D—N1D—C12D | 122.7 (4) |
C6B—N1B—H1B | 118.6 | C1D—N1D—C11D | 118.3 (4) |
C2B—N1B—H1B | 118.6 | C12D—N1D—C11D | 119.0 (5) |
N3B—C2B—N1B | 119.4 (4) | O1D—C1D—N1D | 124.9 (5) |
N3B—C2B—S2B | 121.8 (3) | O1D—C1D—H1D | 117.5 |
N1B—C2B—S2B | 118.8 (3) | N1D—C1D—H1D | 117.5 |
C2B—N3B—C4B | 118.8 (4) | N1D—C11D—H11D | 109.5 |
N4B—C4B—N3B | 115.6 (4) | N1D—C11D—H11E | 109.5 |
N4B—C4B—C5B | 121.1 (4) | H11D—C11D—H11E | 109.5 |
N3B—C4B—C5B | 123.2 (4) | N1D—C11D—H11F | 109.5 |
C4B—N4B—H4B1 | 120.0 | H11D—C11D—H11F | 109.5 |
C4B—N4B—H4B2 | 120.0 | H11E—C11D—H11F | 109.5 |
H4B1—N4B—H4B2 | 120.0 | N1D—C12D—H12D | 109.5 |
C6B—C5B—C4B | 117.5 (4) | N1D—C12D—H12E | 109.5 |
C6B—C5B—H5B | 121.3 | H12D—C12D—H12E | 109.5 |
C4B—C5B—H5B | 121.3 | N1D—C12D—H12F | 109.5 |
N6B—C6B—N1B | 117.2 (4) | H12D—C12D—H12F | 109.5 |
N6B—C6B—C5B | 124.4 (4) | H12E—C12D—H12F | 109.5 |
| | | |
C6A—N1A—C2A—N3A | 0.2 (7) | N1B—C2B—N3B—C4B | −1.5 (7) |
C6A—N1A—C2A—S2A | −178.2 (3) | S2B—C2B—N3B—C4B | 177.7 (4) |
N1A—C2A—N3A—C4A | 0.9 (6) | C2B—N3B—C4B—N4B | 177.8 (5) |
S2A—C2A—N3A—C4A | 179.1 (3) | C2B—N3B—C4B—C5B | −1.3 (8) |
C2A—N3A—C4A—N4A | 178.6 (4) | N4B—C4B—C5B—C6B | −175.9 (5) |
C2A—N3A—C4A—C5A | −2.3 (7) | N3B—C4B—C5B—C6B | 3.1 (8) |
N4A—C4A—C5A—C6A | −178.3 (4) | C2B—N1B—C6B—N6B | −178.6 (5) |
N3A—C4A—C5A—C6A | 2.7 (7) | C2B—N1B—C6B—C5B | −0.7 (7) |
C2A—N1A—C6A—N6A | 178.6 (4) | C4B—C5B—C6B—N6B | 175.7 (5) |
C2A—N1A—C6A—C5A | 0.2 (7) | C4B—C5B—C6B—N1B | −2.1 (7) |
C4A—C5A—C6A—N6A | −179.8 (4) | C12C—N1C—C1C—O1C | 173.3 (5) |
C4A—C5A—C6A—N1A | −1.6 (7) | C11C—N1C—C1C—O1C | 8.0 (8) |
C6B—N1B—C2B—N3B | 2.5 (7) | C12D—N1D—C1D—O1D | −178.1 (5) |
C6B—N1B—C2B—S2B | −176.6 (4) | C11D—N1D—C1D—O1D | 4.0 (9) |
Hydrogen-bond data (Å, °)
The electron density at the critical point (ρ) is given in e Å-3,
the Laplacian at the critical point (LAP) is given in e Å-5 and energy
(E1) [E below?] is defined as -1/2Vcp, where
Vcp is the potential energy density in kJ mol-1 Bohr-3 topD—H···A | D—H | H···A | D···A | D—H···A | ρ | Laplacian | E |
1 | | | | | | | |
N1A—H1A···N3Bi | 0.83 (3) | 2.18 (2) | 3.007 (2) | 172 (3) | 0.21 | 1.94 | 32.03 |
N4A—H4A2···S2B | 0.82 (3) | 2.49 (3) | 3.302 (2) | 172 (3) | 0.19 | 1.37 | 25.36 |
N6A—H6A1···S2Bi | 0.89 (3) | 2.41 (3) | 3.279 (2) | 163 (2) | 0.14 | 1.16 | 17.615 |
N1B—H1B···N3A | 0.82 (3) | 2.20 (3) | 3.017 (2) | 172 (2) | 0.21 | 1.9 | 30.925 |
N4B—H4B1···S2Aii | 0.82 (3) | 2.63 (3) | 3.442 (2) | 169 (3) | 0.14 | 1.11 | 17.16 |
N6B—H6B1···S2A | 0.83 (3) | 2.53 (3) | 3.341 (2) | 169 (3) | 0.17 | 1.29 | 22.41 |
| | | | | | | |
1·DMF | | | | | | | |
N1A—H1A···N3B | 0.88 | 2.15 | 3.020 (5) | 170 | 0.19 | 1.77 | 27.055 |
N4A—H4A1···S2Bi | 0.88 | 2.57 | 3.412 (4) | 162 | 0.15 | 1.17 | 18.73 |
N6A—H6A1···S2B | 0.88 | 2.63 | 3.364 (4) | 142 | 0.21 | 1.51 | 30.815 |
N1B—H1B···N3Aii | 0.88 | 2.17 | 3.036 (5) | 168 | 0.19 | 1.79 | 27.645 |
N4B—H4B1···S2A | 0.88 | 2.50 | 3.314 (4) | 154 | 0.19 | 1.35 | 24.95 |
N6B—H6B1···S2Aii | 0.88 | 2.45 | 3.215 (4) | 146 | 0.21 | 1.51 | 30.815 |
N4A—H4A2···O1Ciii | 0.88 | 2.07 | 2.937 (6) | 167 | | | |
N6A—H6A2···O1D | 0.88 | 2.04 | 2.915 (6) | 172 | | | |
N4B—H4B2···O1C | 0.88 | 2.04 | 2.889 (5) | 163 | | | |
N6B—H6B2···O1Div | 0.88 | 2.04 | 2.861 (5) | 156 | | | |
Symmetry codes: (i) x+1, y, z;
(ii) x-1, y, z;
(iii) -x+2, y-1/2, -z+3/2;
(iv) -x+1, y+1/2, -z+3/2. |
Stacking parameters (Å) topCompound | Centroid–plane distance | Centroid–centroid distance | Offset | |
1 | 3.315 | 3.484 | 1.15 | |
1·DMF | 3.480 | 4.030 | 4.13 | |
1·0.5H2O | 3.250 | 3.445 | 1.31 | |