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This article presents the synthesis of three new 4-thio­pyrimidine derivatives obtained from ethyl 4-methyl-2-phenyl-6-sulfanyl­pyrimidine-5-carboxyl­ate as the starting material, namely, ethyl 4-[(4-chloro­benz­yl)sulfan­yl]-6-methyl-2-phenyl­pyrimidine-5-carboxyl­ate, C21H19ClN2O2S, (2), {4-[(4-chloro­benz­yl)sulfan­yl]-6-methyl-2-phenyl­pyrimidin-5-yl}methanol, C19H17ClN2OS, (3), and 4-[(4-chloro­benz­yl)sulfan­yl]-5,6-dimethyl-2-phenyl­pyrimidine, C19H17ClN2S, (4), which vary in the substituent at the 5-position of the pyrimidine ring. The compounds were characterized by 1H NMR, 13C NMR, IR and mass spectroscopies, and also elemental analysis. The mol­ecular structures were further studied by single-crystal X-ray diffraction. Compound (2) crystallizes in the space group P\overline{1} with one mol­ecule in the asymmetric unit, whereas compounds (3) and (4) crystallize in the space group P21/c with two and one mol­ecule, respectively, in their asymmetric units. The conformation of each mol­ecule is best defined by the dihedral angles formed between the pyrimidine ring and the planes of the two aryl substituents attached at the 2- and 4-positions. The only structural difference between the three compounds is the substituent at the 5-position of the pyrimidine ring, but they present significantly different features in the hydrogen-bond inter­actions. Compound (2) displays a one-dimensional chain formed by hydrogen bonds and the chains are further extended into a two-dimensional network. Mol­ecules of (3) and (4) generate one-dimensional chains formed through inter­molecular inter­actions. The study examines the cytotoxicity of compounds (3) and (4) against Human umbilical vein endothelial cells (HUVEC) and HeLa, K562 and CFPAC cancer cell lines. The presence of the hy­droxy­methyl and methyl groups in (3) and (4), respectively, offers an inter­esting new insight into the structures and behaviour of these derivatives. Compound (4) was found to be nontoxic against CFPAC and HUVEC; however, it shows weak activity against the HeLa and K563 cell lines. The presence of a hy­droxy group in (3) significantly increases its cytotoxicity towards both, i.e. the cancer (HeLa, K562 and CFPAC) and normal (HUVEC) cell lines.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229618012706/sk3706sup1.cif
Contains datablocks 2, 3, 4, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229618012706/sk37062sup2.hkl
Contains datablock 2

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229618012706/sk37063sup3.hkl
Contains datablock 3

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229618012706/sk37064sup4.hkl
Contains datablock 4

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229618012706/sk37062sup5.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229618012706/sk37063sup6.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229618012706/sk37064sup7.cml
Supplementary material

CCDC references: 1866530; 1866529; 1866528

Computing details top

For all structures, data collection: CrysAlis PRO (Agilent, 2012); cell refinement: CrysAlis PRO (Agilent, 2012); data reduction: CrysAlis PRO (Agilent, 2012); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015); molecular graphics: DIAMOND (Brandenburg, 2014); software used to prepare material for publication: PLATON (Spek, 2009).

Ethyl 4-[(4-chlorobenzyl)sulfanyl]-6-methyl-2-phenylpyrimidine-5-carboxylate (2) top
Crystal data top
C21H19ClN2O2SF(000) = 416
Mr = 398.89Dx = 1.402 Mg m3
Triclinic, P1Melting point: 360 K
a = 7.8332 (18) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.401 (2) ÅCell parameters from 6878 reflections
c = 12.166 (3) Åθ = 3.1–28.0°
α = 76.05 (2)°µ = 0.33 mm1
β = 84.86 (2)°T = 100 K
γ = 79.63 (2)°Needle, colourless
V = 945.1 (4) Å30.42 × 0.30 × 0.12 mm
Z = 2
Data collection top
Agilent Xcalibur Sapphire2, large Be window
diffractometer
4461 independent reflections
Radiation source: Enhance (Mo) X-ray Source4002 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
Detector resolution: 8.3359 pixels mm-1θmax = 28.1°, θmin = 3.1°
ω scansh = 107
Absorption correction: analytical
CrysAlis PRO (Agilent, 2012), Analytical numeric absorption correction using a multifaceted crystal model based on expressions derived by Clark & Reid (1995)
k = 1313
Tmin = 0.896, Tmax = 0.963l = 1516
8817 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.02 w = 1/[σ2(Fo2) + (0.0886P)2 + 0.4144P]
where P = (Fo2 + 2Fc2)/3
4461 reflections(Δ/σ)max = 0.001
246 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = 0.51 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cl10.72878 (6)0.77464 (5)0.96609 (4)0.02398 (15)
S10.02488 (5)0.67866 (4)0.71019 (3)0.01522 (14)
N10.29616 (17)0.45852 (14)0.45025 (12)0.0146 (3)
C20.3081 (2)0.41419 (16)0.56249 (13)0.0138 (3)
N30.22807 (18)0.47817 (14)0.64066 (11)0.0142 (3)
C40.1271 (2)0.59609 (16)0.60479 (13)0.0133 (3)
C50.1020 (2)0.65182 (16)0.48774 (13)0.0136 (3)
C60.1933 (2)0.57659 (16)0.41265 (13)0.0140 (3)
C210.4188 (2)0.28249 (17)0.60521 (14)0.0156 (3)
C220.5103 (2)0.21037 (17)0.52934 (15)0.0189 (4)
H220.4999970.2447810.4500440.023*
C230.6166 (2)0.08838 (18)0.56941 (16)0.0227 (4)
H230.6796310.0401620.5174560.027*
C240.6306 (2)0.03704 (18)0.68522 (16)0.0226 (4)
H240.7045890.0456480.7124030.027*
C250.5366 (3)0.10640 (19)0.76158 (16)0.0241 (4)
H250.5437320.0700320.8408520.029*
C260.4321 (2)0.22920 (18)0.72142 (15)0.0196 (4)
H260.3692890.2771780.7735990.023*
C410.1186 (2)0.56933 (17)0.83873 (13)0.0168 (3)
H41A0.0288850.5656480.9016570.020*
H41B0.1544830.4772880.8267260.020*
C420.2731 (2)0.61664 (16)0.87166 (13)0.0156 (3)
C430.2751 (2)0.64585 (19)0.97709 (14)0.0211 (4)
H430.1789500.6330731.0296180.025*
C440.4148 (2)0.6933 (2)1.00732 (15)0.0233 (4)
H440.4149270.7123401.0798700.028*
C450.5537 (2)0.71247 (18)0.92981 (14)0.0181 (3)
C460.5572 (2)0.68223 (18)0.82470 (14)0.0193 (4)
H460.6540340.6945520.7726740.023*
C470.4183 (2)0.63407 (18)0.79668 (14)0.0188 (4)
H470.4208440.6121830.7250510.023*
C510.0111 (2)0.78413 (17)0.45384 (14)0.0149 (3)
O10.09068 (17)0.84261 (13)0.52191 (11)0.0236 (3)
O20.01605 (16)0.83239 (12)0.34208 (10)0.0192 (3)
C520.1173 (2)0.96538 (18)0.30497 (16)0.0223 (4)
H52A0.0727281.0317550.3362000.027*
H52B0.2409210.9651740.3304290.027*
C530.0980 (3)0.9991 (2)0.17738 (19)0.0398 (5)
H53A0.0246441.0007560.1536530.060*
H53B0.1664531.0874560.1474780.060*
H53C0.1396380.9311010.1480060.060*
C610.1856 (2)0.61827 (18)0.28561 (14)0.0191 (4)
H61A0.2589520.5497620.2516840.029*
H61B0.2273560.7042350.2579560.029*
H61C0.0653100.6279650.2644540.029*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cl10.0233 (2)0.0282 (3)0.0220 (2)0.00532 (18)0.00373 (17)0.00702 (18)
S10.0163 (2)0.0141 (2)0.0145 (2)0.00164 (16)0.00114 (15)0.00572 (15)
N10.0145 (6)0.0135 (7)0.0160 (6)0.0016 (5)0.0015 (5)0.0052 (5)
C20.0127 (7)0.0124 (7)0.0173 (7)0.0020 (6)0.0001 (6)0.0055 (6)
N30.0148 (6)0.0122 (7)0.0155 (6)0.0003 (5)0.0004 (5)0.0052 (5)
C40.0130 (7)0.0124 (7)0.0150 (7)0.0019 (6)0.0004 (6)0.0049 (6)
C50.0135 (7)0.0108 (7)0.0165 (7)0.0016 (6)0.0002 (6)0.0040 (6)
C60.0130 (7)0.0125 (8)0.0169 (7)0.0024 (6)0.0014 (6)0.0045 (6)
C210.0145 (7)0.0130 (8)0.0201 (8)0.0014 (6)0.0009 (6)0.0059 (6)
C220.0198 (8)0.0148 (8)0.0211 (8)0.0010 (6)0.0019 (6)0.0061 (6)
C230.0201 (8)0.0163 (9)0.0311 (9)0.0021 (7)0.0027 (7)0.0099 (7)
C240.0190 (8)0.0140 (8)0.0339 (10)0.0029 (7)0.0060 (7)0.0062 (7)
C250.0291 (9)0.0181 (9)0.0237 (9)0.0011 (7)0.0080 (7)0.0035 (7)
C260.0220 (8)0.0153 (8)0.0217 (8)0.0017 (7)0.0046 (7)0.0070 (6)
C410.0197 (8)0.0165 (8)0.0132 (7)0.0016 (6)0.0028 (6)0.0041 (6)
C420.0188 (8)0.0117 (8)0.0141 (7)0.0016 (6)0.0006 (6)0.0024 (6)
C430.0242 (9)0.0245 (9)0.0144 (8)0.0045 (7)0.0036 (6)0.0057 (7)
C440.0286 (9)0.0280 (10)0.0141 (8)0.0048 (8)0.0004 (7)0.0067 (7)
C450.0187 (8)0.0172 (8)0.0176 (8)0.0003 (6)0.0028 (6)0.0041 (6)
C460.0191 (8)0.0207 (9)0.0170 (8)0.0001 (7)0.0017 (6)0.0056 (6)
C470.0212 (8)0.0204 (9)0.0145 (7)0.0013 (7)0.0039 (6)0.0069 (6)
C510.0142 (7)0.0136 (8)0.0172 (7)0.0018 (6)0.0023 (6)0.0040 (6)
O10.0282 (7)0.0186 (7)0.0210 (6)0.0093 (5)0.0027 (5)0.0077 (5)
O20.0235 (6)0.0127 (6)0.0178 (6)0.0031 (5)0.0012 (5)0.0013 (5)
C520.0278 (9)0.0114 (8)0.0248 (9)0.0034 (7)0.0057 (7)0.0016 (7)
C530.0504 (14)0.0309 (12)0.0317 (11)0.0009 (10)0.0072 (10)0.0030 (9)
C610.0243 (8)0.0181 (8)0.0141 (7)0.0015 (7)0.0039 (6)0.0051 (6)
Geometric parameters (Å, º) top
Cl1—C451.7488 (19)C41—H41A0.9900
S1—C41.7672 (16)C41—H41B0.9900
S1—C411.8234 (18)C42—C431.390 (2)
N1—C21.338 (2)C42—C471.402 (2)
N1—C61.344 (2)C43—C441.389 (3)
C2—N31.337 (2)C43—H430.9500
C2—C211.486 (2)C44—C451.385 (2)
N3—C41.332 (2)C44—H440.9500
C4—C51.419 (2)C45—C461.386 (2)
C5—C61.409 (2)C46—C471.377 (3)
C5—C511.484 (2)C46—H460.9500
C6—C611.505 (2)C47—H470.9500
C21—C261.395 (2)C51—O11.207 (2)
C21—C221.397 (2)C51—O21.332 (2)
C22—C231.391 (2)O2—C521.454 (2)
C22—H220.9500C52—C531.507 (3)
C23—C241.388 (3)C52—H52A0.9900
C23—H230.9500C52—H52B0.9900
C24—C251.391 (3)C53—H53A0.9800
C24—H240.9500C53—H53B0.9800
C25—C261.391 (2)C53—H53C0.9800
C25—H250.9500C61—H61A0.9800
C26—H260.9500C61—H61B0.9800
C41—C421.505 (2)C61—H61C0.9800
C4—S1—C41101.87 (8)C43—C42—C41120.82 (15)
C2—N1—C6117.35 (14)C47—C42—C41121.16 (15)
N3—C2—N1125.60 (15)C44—C43—C42121.42 (16)
N3—C2—C21116.55 (14)C44—C43—H43119.3
N1—C2—C21117.85 (14)C42—C43—H43119.3
C4—N3—C2117.84 (14)C45—C44—C43118.81 (16)
N3—C4—C5121.53 (14)C45—C44—H44120.6
N3—C4—S1116.68 (12)C43—C44—H44120.6
C5—C4—S1121.79 (12)C44—C45—C46121.25 (17)
C6—C5—C4115.96 (14)C44—C45—Cl1119.22 (14)
C6—C5—C51125.40 (15)C46—C45—Cl1119.53 (13)
C4—C5—C51118.61 (14)C47—C46—C45119.08 (16)
N1—C6—C5121.71 (15)C47—C46—H46120.5
N1—C6—C61113.95 (14)C45—C46—H46120.5
C5—C6—C61124.33 (15)C46—C47—C42121.39 (16)
C26—C21—C22119.19 (16)C46—C47—H47119.3
C26—C21—C2120.47 (15)C42—C47—H47119.3
C22—C21—C2120.34 (15)O1—C51—O2123.30 (15)
C23—C22—C21120.28 (16)O1—C51—C5122.70 (15)
C23—C22—H22119.9O2—C51—C5114.00 (14)
C21—C22—H22119.9C51—O2—C52115.94 (13)
C24—C23—C22120.05 (16)O2—C52—C53105.96 (16)
C24—C23—H23120.0O2—C52—H52A110.5
C22—C23—H23120.0C53—C52—H52A110.5
C23—C24—C25120.14 (16)O2—C52—H52B110.5
C23—C24—H24119.9C53—C52—H52B110.5
C25—C24—H24119.9H52A—C52—H52B108.7
C26—C25—C24119.75 (17)C52—C53—H53A109.5
C26—C25—H25120.1C52—C53—H53B109.5
C24—C25—H25120.1H53A—C53—H53B109.5
C25—C26—C21120.56 (16)C52—C53—H53C109.5
C25—C26—H26119.7H53A—C53—H53C109.5
C21—C26—H26119.7H53B—C53—H53C109.5
C42—C41—S1112.36 (11)C6—C61—H61A109.5
C42—C41—H41A109.1C6—C61—H61B109.5
S1—C41—H41A109.1H61A—C61—H61B109.5
C42—C41—H41B109.1C6—C61—H61C109.5
S1—C41—H41B109.1H61A—C61—H61C109.5
H41A—C41—H41B107.9H61B—C61—H61C109.5
C43—C42—C47118.02 (16)
C6—N1—C2—N30.9 (2)C22—C23—C24—C250.9 (3)
C6—N1—C2—C21178.87 (14)C23—C24—C25—C261.7 (3)
N1—C2—N3—C40.2 (2)C24—C25—C26—C211.0 (3)
C21—C2—N3—C4179.60 (14)C22—C21—C26—C250.6 (3)
C2—N3—C4—C51.1 (2)C2—C21—C26—C25179.54 (16)
C2—N3—C4—S1179.46 (12)C4—S1—C41—C4295.25 (12)
C41—S1—C4—N35.14 (15)S1—C41—C42—C43121.93 (15)
C41—S1—C4—C5175.37 (14)S1—C41—C42—C4757.33 (19)
N3—C4—C5—C61.5 (2)C47—C42—C43—C441.2 (3)
S1—C4—C5—C6179.06 (12)C41—C42—C43—C44178.10 (16)
N3—C4—C5—C51179.53 (14)C42—C43—C44—C450.4 (3)
S1—C4—C5—C511.0 (2)C43—C44—C45—C461.5 (3)
C2—N1—C6—C50.4 (2)C43—C44—C45—Cl1179.03 (14)
C2—N1—C6—C61179.30 (14)C44—C45—C46—C470.9 (3)
C4—C5—C6—N10.7 (2)Cl1—C45—C46—C47179.63 (13)
C51—C5—C6—N1178.63 (14)C45—C46—C47—C420.8 (3)
C4—C5—C6—C61179.61 (15)C43—C42—C47—C461.8 (3)
C51—C5—C6—C611.7 (3)C41—C42—C47—C46177.48 (15)
N3—C2—C21—C261.7 (2)C6—C5—C51—O1177.72 (16)
N1—C2—C21—C26178.08 (15)C4—C5—C51—O14.4 (2)
N3—C2—C21—C22178.47 (15)C6—C5—C51—O22.6 (2)
N1—C2—C21—C221.7 (2)C4—C5—C51—O2175.25 (14)
C26—C21—C22—C231.5 (3)O1—C51—O2—C523.1 (2)
C2—C21—C22—C23178.72 (16)C5—C51—O2—C52176.57 (14)
C21—C22—C23—C240.7 (3)C51—O2—C52—C53178.11 (16)
Hydrogen-bond geometry (Å, º) top
Cg2 is the centroid of the C21–C26 ring and Cg3 is the centroid of the C41–C46 ring.
D—H···AD—HH···AD···AD—H···A
C41—H41B···N30.992.282.807 (2)112
C23—H23···O1i0.952.473.239 (2)138
C46—H46···S1ii0.952.923.798 (2)154
C52—H52A···S1iii0.993.013.857 (2)144
C52—H52B···Cg2iv0.992.723.600 (2)148
C53—H53B···Cg3iii0.992.913.878 (2)169
Symmetry codes: (i) x+1, y1, z; (ii) x+1, y, z; (iii) x, y+2, z+1; (iv) x, y+1, z+1.
{4-[(4-Chlorobenzyl)sulfanyl]-6-methyl-2-phenylpyrimidin-5-yl}methanol (3) top
Crystal data top
C19H17ClN2OSDx = 1.415 Mg m3
Mr = 356.85Melting point: 402 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 4.6074 (12) ÅCell parameters from 2883 reflections
b = 22.882 (8) Åθ = 3.0–30.6°
c = 31.816 (12) ŵ = 0.36 mm1
β = 92.41 (5)°T = 100 K
V = 3351.3 (19) Å3Needle, colourless
Z = 80.60 × 0.05 × 0.04 mm
F(000) = 1488
Data collection top
Agilent Xcalibur Ruby
diffractometer
6370 reflections with I > 2σ(I)
Radiation source: Enhance (Mo) X-ray SourceRint = 0.043
Graphite monochromatorθmax = 30.7°, θmin = 3.0°
Detector resolution: 10.3456 pixels mm-1h = 64
ω scansk = 3229
17748 measured reflectionsl = 4439
9255 independent reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.0334P)2 + 2.0892P]
where P = (Fo2 + 2Fc2)/3
9255 reflections(Δ/σ)max = 0.001
437 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = 0.50 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A1.2797 (4)0.40497 (8)0.20688 (6)0.0153 (4)
C2A1.4163 (5)0.45253 (10)0.22188 (7)0.0129 (5)
C21A1.6360 (5)0.44446 (10)0.25683 (7)0.0123 (5)
C22A1.7048 (5)0.38889 (11)0.27217 (8)0.0161 (5)
H22A1.6113310.3554870.2601220.019*
C23A1.9108 (6)0.38235 (11)0.30520 (8)0.0186 (5)
H23A1.9571660.3443930.3155380.022*
C24A2.0483 (6)0.43067 (11)0.32307 (8)0.0185 (5)
H24A2.1875630.4259780.3457020.022*
C25A1.9814 (6)0.48590 (11)0.30770 (8)0.0182 (5)
H25A2.0765200.5191670.3196600.022*
C26A1.7763 (5)0.49288 (10)0.27496 (8)0.0156 (5)
H26A1.7309080.5309630.2647770.019*
N3A1.3764 (4)0.50756 (8)0.20742 (6)0.0131 (4)
C4A1.1800 (5)0.51459 (10)0.17592 (7)0.0127 (5)
S1A1.13494 (14)0.58490 (3)0.15305 (2)0.01607 (14)
C41A1.3585 (5)0.63154 (10)0.18778 (8)0.0159 (5)
H4A11.5170000.6079870.2012040.019*
H4A21.4478040.6626400.1709780.019*
C42A1.1818 (5)0.65921 (10)0.22154 (8)0.0148 (5)
C43A1.1099 (6)0.62723 (10)0.25688 (8)0.0163 (5)
H43A1.1866390.5890020.2609080.020*
C44A0.9275 (6)0.65045 (10)0.28636 (8)0.0166 (5)
H44A0.8776170.6281260.3101680.020*
C45A0.8193 (5)0.70661 (11)0.28060 (8)0.0161 (5)
Cl1A0.58490 (15)0.73533 (3)0.31691 (2)0.02209 (15)
C46A0.8955 (6)0.74031 (11)0.24662 (8)0.0181 (5)
H46A0.8259230.7792060.2434230.022*
C47A1.0767 (6)0.71594 (10)0.21712 (8)0.0176 (5)
H47A1.1291130.7385950.1935870.021*
C5A1.0148 (5)0.46799 (10)0.15884 (7)0.0134 (5)
C51A0.7851 (5)0.47679 (11)0.12446 (8)0.0165 (5)
H5A10.6120980.4530390.1304780.020*
H5A20.7259010.5183800.1235920.020*
O1A0.8912 (4)0.46018 (8)0.08440 (5)0.0218 (4)
H1A0.7576340.4437990.0699960.033*
C6A1.0769 (5)0.41286 (10)0.17570 (7)0.0149 (5)
C61A0.9228 (6)0.35882 (10)0.15999 (9)0.0214 (6)
H6A11.0457720.3245860.1658280.032*
H6A20.8821650.3621050.1295960.032*
H6A30.7396730.3544780.1742790.032*
N1B0.2616 (4)0.82060 (9)0.55318 (6)0.0155 (4)
C2B0.1432 (5)0.77237 (10)0.53616 (7)0.0134 (5)
C21B0.0573 (5)0.73778 (10)0.56193 (7)0.0137 (5)
C22B0.1400 (6)0.75839 (11)0.60104 (8)0.0175 (5)
H22B0.0665560.7945860.6115480.021*
C23B0.3303 (6)0.72573 (11)0.62456 (8)0.0188 (5)
H23B0.3868160.7399390.6510520.023*
C24B0.4376 (6)0.67283 (11)0.60970 (8)0.0201 (6)
H24B0.5681800.6509320.6258310.024*
C25B0.3536 (6)0.65194 (11)0.57117 (8)0.0210 (6)
H25B0.4251640.6154360.5609800.025*
C26B0.1651 (6)0.68428 (11)0.54745 (8)0.0194 (5)
H26B0.1089650.6697340.5210330.023*
N3B0.1868 (4)0.75209 (8)0.49712 (6)0.0147 (4)
C4B0.3716 (5)0.78215 (10)0.47415 (7)0.0148 (5)
S1B0.42363 (15)0.75967 (3)0.42172 (2)0.01916 (14)
C41B0.1877 (6)0.69560 (11)0.41546 (8)0.0207 (6)
H4B10.0356960.6974000.4365140.025*
H4B20.0898250.6965550.3871690.025*
C42B0.3520 (5)0.63884 (11)0.42071 (8)0.0172 (5)
C43B0.4411 (6)0.61849 (12)0.46044 (8)0.0240 (6)
H43B0.3908400.6399910.4846200.029*
C44B0.6019 (6)0.56745 (12)0.46547 (8)0.0247 (6)
H44B0.6631900.5543260.4927480.030*
C45B0.6710 (6)0.53620 (11)0.43033 (8)0.0196 (5)
Cl1B0.87761 (16)0.47237 (3)0.43587 (2)0.02764 (16)
C46B0.5797 (6)0.55399 (11)0.39039 (8)0.0227 (6)
H46B0.6239720.5313250.3664770.027*
C47B0.4224 (6)0.60546 (11)0.38581 (8)0.0209 (6)
H47B0.3613890.6182490.3584300.025*
C5B0.5188 (5)0.83189 (10)0.48939 (7)0.0150 (5)
C51B0.7409 (5)0.86372 (11)0.46451 (8)0.0182 (5)
H5B10.9104520.8740400.4831810.022*
H5B20.8088880.8379710.4419300.022*
O1B0.6163 (4)0.91572 (9)0.44639 (7)0.0322 (5)
H1B0.7443670.9343350.4339580.048*
C6B0.4518 (5)0.85009 (10)0.52973 (8)0.0158 (5)
C61B0.5852 (6)0.90393 (11)0.54991 (8)0.0240 (6)
H6B10.4661330.9168130.5729700.036*
H6B20.5945110.9351200.5289000.036*
H6B30.7818080.8948320.5609620.036*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0145 (10)0.0147 (10)0.0168 (10)0.0003 (9)0.0003 (9)0.0003 (8)
C2A0.0104 (11)0.0170 (11)0.0113 (11)0.0012 (10)0.0026 (9)0.0017 (9)
C21A0.0128 (12)0.0141 (11)0.0103 (11)0.0031 (10)0.0035 (9)0.0008 (9)
C22A0.0160 (12)0.0158 (12)0.0164 (12)0.0012 (10)0.0006 (10)0.0001 (9)
C23A0.0228 (14)0.0187 (13)0.0145 (12)0.0038 (11)0.0031 (11)0.0040 (10)
C24A0.0160 (12)0.0260 (13)0.0132 (12)0.0047 (11)0.0016 (10)0.0010 (10)
C25A0.0184 (13)0.0194 (13)0.0165 (12)0.0010 (11)0.0030 (11)0.0014 (10)
C26A0.0179 (13)0.0124 (11)0.0166 (12)0.0014 (10)0.0004 (11)0.0022 (9)
N3A0.0143 (10)0.0124 (9)0.0125 (10)0.0008 (8)0.0014 (8)0.0001 (8)
C4A0.0120 (11)0.0153 (11)0.0109 (11)0.0026 (10)0.0037 (9)0.0016 (9)
S1A0.0204 (3)0.0145 (3)0.0131 (3)0.0021 (3)0.0023 (2)0.0011 (2)
C41A0.0170 (13)0.0127 (11)0.0178 (12)0.0016 (10)0.0002 (10)0.0004 (9)
C42A0.0118 (12)0.0165 (12)0.0159 (12)0.0013 (10)0.0027 (10)0.0004 (9)
C43A0.0203 (13)0.0115 (11)0.0169 (12)0.0004 (10)0.0019 (11)0.0001 (9)
C44A0.0195 (13)0.0167 (12)0.0134 (12)0.0027 (10)0.0019 (10)0.0017 (9)
C45A0.0133 (12)0.0197 (12)0.0151 (12)0.0008 (10)0.0012 (10)0.0044 (10)
Cl1A0.0239 (3)0.0224 (3)0.0203 (3)0.0010 (3)0.0049 (3)0.0057 (2)
C46A0.0194 (13)0.0150 (12)0.0196 (12)0.0025 (11)0.0022 (11)0.0001 (10)
C47A0.0203 (13)0.0160 (12)0.0163 (12)0.0000 (11)0.0009 (11)0.0037 (10)
C5A0.0085 (11)0.0189 (12)0.0131 (11)0.0010 (10)0.0021 (9)0.0030 (9)
C51A0.0154 (12)0.0185 (12)0.0154 (12)0.0028 (10)0.0013 (10)0.0047 (10)
O1A0.0134 (9)0.0382 (11)0.0138 (9)0.0005 (8)0.0005 (7)0.0102 (8)
C6A0.0130 (12)0.0173 (12)0.0146 (11)0.0015 (10)0.0022 (10)0.0021 (10)
C61A0.0215 (14)0.0160 (12)0.0261 (14)0.0020 (11)0.0051 (12)0.0043 (10)
N1B0.0144 (10)0.0193 (10)0.0127 (10)0.0007 (9)0.0006 (8)0.0017 (8)
C2B0.0131 (11)0.0175 (12)0.0095 (11)0.0053 (10)0.0021 (9)0.0019 (9)
C21B0.0110 (11)0.0182 (12)0.0116 (11)0.0038 (10)0.0024 (9)0.0030 (9)
C22B0.0197 (13)0.0186 (12)0.0140 (12)0.0026 (11)0.0007 (10)0.0024 (10)
C23B0.0201 (13)0.0231 (13)0.0133 (12)0.0037 (11)0.0023 (10)0.0026 (10)
C24B0.0153 (13)0.0260 (14)0.0190 (13)0.0026 (11)0.0010 (11)0.0105 (11)
C25B0.0215 (14)0.0206 (13)0.0208 (13)0.0034 (11)0.0008 (11)0.0014 (10)
C26B0.0200 (14)0.0241 (13)0.0143 (12)0.0001 (11)0.0020 (11)0.0012 (10)
N3B0.0154 (10)0.0176 (10)0.0109 (9)0.0040 (9)0.0009 (8)0.0007 (8)
C4B0.0155 (12)0.0175 (12)0.0111 (11)0.0060 (10)0.0020 (10)0.0033 (9)
S1B0.0248 (3)0.0217 (3)0.0112 (3)0.0045 (3)0.0030 (3)0.0010 (2)
C41B0.0206 (14)0.0283 (14)0.0128 (12)0.0027 (12)0.0036 (11)0.0024 (10)
C42B0.0151 (12)0.0223 (13)0.0140 (12)0.0025 (11)0.0009 (10)0.0013 (10)
C43B0.0320 (16)0.0259 (14)0.0138 (12)0.0064 (13)0.0026 (12)0.0030 (10)
C44B0.0346 (16)0.0256 (14)0.0135 (12)0.0039 (13)0.0047 (12)0.0031 (10)
C45B0.0208 (13)0.0151 (12)0.0226 (13)0.0005 (11)0.0017 (11)0.0007 (10)
Cl1B0.0308 (4)0.0196 (3)0.0321 (4)0.0035 (3)0.0021 (3)0.0001 (3)
C46B0.0269 (15)0.0210 (13)0.0204 (13)0.0003 (12)0.0028 (12)0.0060 (10)
C47B0.0260 (14)0.0249 (13)0.0118 (12)0.0004 (12)0.0009 (11)0.0009 (10)
C5B0.0130 (12)0.0192 (12)0.0126 (11)0.0061 (10)0.0010 (10)0.0041 (9)
C51B0.0126 (12)0.0254 (13)0.0166 (12)0.0033 (11)0.0007 (10)0.0057 (10)
O1B0.0144 (9)0.0397 (12)0.0424 (13)0.0033 (9)0.0018 (9)0.0291 (10)
C6B0.0118 (12)0.0185 (12)0.0167 (12)0.0020 (10)0.0030 (10)0.0008 (10)
C61B0.0254 (15)0.0273 (14)0.0192 (13)0.0072 (12)0.0014 (12)0.0028 (11)
Geometric parameters (Å, º) top
N1A—C2A1.335 (3)N1B—C2B1.335 (3)
N1A—C6A1.346 (3)N1B—C6B1.355 (3)
C2A—N3A1.350 (3)C2B—N3B1.349 (3)
C2A—C21A1.483 (3)C2B—C21B1.489 (3)
C21A—C22A1.394 (3)C21B—C26B1.392 (3)
C21A—C26A1.395 (3)C21B—C22B1.398 (3)
C22A—C23A1.394 (4)C22B—C23B1.394 (3)
C22A—H22A0.9500C22B—H22B0.9500
C23A—C24A1.385 (4)C23B—C24B1.383 (4)
C23A—H23A0.9500C23B—H23B0.9500
C24A—C25A1.385 (3)C24B—C25B1.386 (4)
C24A—H24A0.9500C24B—H24B0.9500
C25A—C26A1.386 (3)C25B—C26B1.388 (4)
C25A—H25A0.9500C25B—H25B0.9500
C26A—H26A0.9500C26B—H26B0.9500
N3A—C4A1.332 (3)N3B—C4B1.336 (3)
C4A—C5A1.406 (3)C4B—C5B1.401 (3)
C4A—S1A1.774 (2)C4B—S1B1.772 (3)
S1A—C41A1.823 (3)S1B—C41B1.831 (3)
C41A—C42A1.514 (3)C41B—C42B1.509 (4)
C41A—H4A10.9900C41B—H4B10.9900
C41A—H4A20.9900C41B—H4B20.9900
C42A—C47A1.391 (3)C42B—C43B1.393 (3)
C42A—C43A1.393 (3)C42B—C47B1.397 (3)
C43A—C44A1.391 (3)C43B—C44B1.389 (4)
C43A—H43A0.9500C43B—H43B0.9500
C44A—C45A1.388 (3)C44B—C45B1.376 (4)
C44A—H44A0.9500C44B—H44B0.9500
C45A—C46A1.385 (3)C45B—C46B1.383 (4)
C45A—Cl1A1.743 (3)C45B—Cl1B1.748 (3)
C46A—C47A1.398 (3)C46B—C47B1.388 (4)
C46A—H46A0.9500C46B—H46B0.9500
C47A—H47A0.9500C47B—H47B0.9500
C5A—C6A1.396 (3)C5B—C6B1.396 (3)
C5A—C51A1.504 (3)C5B—C51B1.508 (3)
C51A—O1A1.435 (3)C51B—O1B1.432 (3)
C51A—H5A10.9900C51B—H5B10.9900
C51A—H5A20.9900C51B—H5B20.9900
O1A—H1A0.8400O1B—H1B0.8400
C6A—C61A1.501 (3)C6B—C61B1.508 (3)
C61A—H6A10.9800C61B—H6B10.9800
C61A—H6A20.9800C61B—H6B20.9800
C61A—H6A30.9800C61B—H6B30.9800
C2A—N1A—C6A117.1 (2)C2B—N1B—C6B116.8 (2)
N1A—C2A—N3A125.6 (2)N1B—C2B—N3B125.7 (2)
N1A—C2A—C21A117.6 (2)N1B—C2B—C21B117.9 (2)
N3A—C2A—C21A116.8 (2)N3B—C2B—C21B116.4 (2)
C22A—C21A—C26A119.0 (2)C26B—C21B—C22B119.0 (2)
C22A—C21A—C2A120.9 (2)C26B—C21B—C2B120.4 (2)
C26A—C21A—C2A120.1 (2)C22B—C21B—C2B120.6 (2)
C21A—C22A—C23A120.0 (2)C23B—C22B—C21B119.9 (2)
C21A—C22A—H22A120.0C23B—C22B—H22B120.1
C23A—C22A—H22A120.0C21B—C22B—H22B120.1
C24A—C23A—C22A120.6 (2)C24B—C23B—C22B120.6 (2)
C24A—C23A—H23A119.7C24B—C23B—H23B119.7
C22A—C23A—H23A119.7C22B—C23B—H23B119.7
C23A—C24A—C25A119.5 (2)C23B—C24B—C25B119.7 (2)
C23A—C24A—H24A120.3C23B—C24B—H24B120.2
C25A—C24A—H24A120.3C25B—C24B—H24B120.2
C24A—C25A—C26A120.4 (2)C24B—C25B—C26B120.1 (2)
C24A—C25A—H25A119.8C24B—C25B—H25B120.0
C26A—C25A—H25A119.8C26B—C25B—H25B120.0
C25A—C26A—C21A120.6 (2)C25B—C26B—C21B120.8 (2)
C25A—C26A—H26A119.7C25B—C26B—H26B119.6
C21A—C26A—H26A119.7C21B—C26B—H26B119.6
C4A—N3A—C2A116.6 (2)C4B—N3B—C2B116.7 (2)
N3A—C4A—C5A122.6 (2)N3B—C4B—C5B122.6 (2)
N3A—C4A—S1A118.84 (18)N3B—C4B—S1B118.70 (18)
C5A—C4A—S1A118.50 (19)C5B—C4B—S1B118.62 (18)
C4A—S1A—C41A103.23 (12)C4B—S1B—C41B103.39 (12)
C42A—C41A—S1A111.58 (17)C42B—C41B—S1B112.61 (19)
C42A—C41A—H4A1109.3C42B—C41B—H4B1109.1
S1A—C41A—H4A1109.3S1B—C41B—H4B1109.1
C42A—C41A—H4A2109.3C42B—C41B—H4B2109.1
S1A—C41A—H4A2109.3S1B—C41B—H4B2109.1
H4A1—C41A—H4A2108.0H4B1—C41B—H4B2107.8
C47A—C42A—C43A118.6 (2)C43B—C42B—C47B118.0 (2)
C47A—C42A—C41A120.9 (2)C43B—C42B—C41B121.0 (2)
C43A—C42A—C41A120.4 (2)C47B—C42B—C41B121.0 (2)
C44A—C43A—C42A120.9 (2)C44B—C43B—C42B121.4 (2)
C44A—C43A—H43A119.5C44B—C43B—H43B119.3
C42A—C43A—H43A119.5C42B—C43B—H43B119.3
C45A—C44A—C43A119.3 (2)C45B—C44B—C43B119.0 (2)
C45A—C44A—H44A120.4C45B—C44B—H44B120.5
C43A—C44A—H44A120.4C43B—C44B—H44B120.5
C46A—C45A—C44A121.1 (2)C44B—C45B—C46B121.4 (2)
C46A—C45A—Cl1A119.45 (19)C44B—C45B—Cl1B119.7 (2)
C44A—C45A—Cl1A119.40 (19)C46B—C45B—Cl1B118.8 (2)
C45A—C46A—C47A118.7 (2)C45B—C46B—C47B118.9 (2)
C45A—C46A—H46A120.7C45B—C46B—H46B120.5
C47A—C46A—H46A120.7C47B—C46B—H46B120.5
C42A—C47A—C46A121.3 (2)C46B—C47B—C42B121.2 (2)
C42A—C47A—H47A119.4C46B—C47B—H47B119.4
C46A—C47A—H47A119.4C42B—C47B—H47B119.4
C6A—C5A—C4A116.0 (2)C6B—C5B—C4B116.0 (2)
C6A—C5A—C51A121.8 (2)C6B—C5B—C51B121.3 (2)
C4A—C5A—C51A122.2 (2)C4B—C5B—C51B122.7 (2)
O1A—C51A—C5A110.8 (2)O1B—C51B—C5B110.1 (2)
O1A—C51A—H5A1109.5O1B—C51B—H5B1109.6
C5A—C51A—H5A1109.5C5B—C51B—H5B1109.6
O1A—C51A—H5A2109.5O1B—C51B—H5B2109.6
C5A—C51A—H5A2109.5C5B—C51B—H5B2109.6
H5A1—C51A—H5A2108.1H5B1—C51B—H5B2108.2
C51A—O1A—H1A109.5C51B—O1B—H1B109.5
N1A—C6A—C5A122.0 (2)N1B—C6B—C5B122.1 (2)
N1A—C6A—C61A116.0 (2)N1B—C6B—C61B115.7 (2)
C5A—C6A—C61A122.0 (2)C5B—C6B—C61B122.2 (2)
C6A—C61A—H6A1109.5C6B—C61B—H6B1109.5
C6A—C61A—H6A2109.5C6B—C61B—H6B2109.5
H6A1—C61A—H6A2109.5H6B1—C61B—H6B2109.5
C6A—C61A—H6A3109.5C6B—C61B—H6B3109.5
H6A1—C61A—H6A3109.5H6B1—C61B—H6B3109.5
H6A2—C61A—H6A3109.5H6B2—C61B—H6B3109.5
C6A—N1A—C2A—N3A2.6 (4)C6B—N1B—C2B—N3B3.1 (4)
C6A—N1A—C2A—C21A178.8 (2)C6B—N1B—C2B—C21B177.5 (2)
N1A—C2A—C21A—C22A2.5 (3)N1B—C2B—C21B—C26B173.8 (2)
N3A—C2A—C21A—C22A176.2 (2)N3B—C2B—C21B—C26B6.8 (3)
N1A—C2A—C21A—C26A177.2 (2)N1B—C2B—C21B—C22B6.1 (3)
N3A—C2A—C21A—C26A4.1 (3)N3B—C2B—C21B—C22B173.3 (2)
C26A—C21A—C22A—C23A0.1 (4)C26B—C21B—C22B—C23B0.8 (4)
C2A—C21A—C22A—C23A179.6 (2)C2B—C21B—C22B—C23B179.3 (2)
C21A—C22A—C23A—C24A0.1 (4)C21B—C22B—C23B—C24B0.3 (4)
C22A—C23A—C24A—C25A0.4 (4)C22B—C23B—C24B—C25B0.4 (4)
C23A—C24A—C25A—C26A0.6 (4)C23B—C24B—C25B—C26B0.7 (4)
C24A—C25A—C26A—C21A0.4 (4)C24B—C25B—C26B—C21B0.2 (4)
C22A—C21A—C26A—C25A0.1 (4)C22B—C21B—C26B—C25B0.5 (4)
C2A—C21A—C26A—C25A179.8 (2)C2B—C21B—C26B—C25B179.6 (2)
N1A—C2A—N3A—C4A1.1 (4)N1B—C2B—N3B—C4B2.2 (4)
C21A—C2A—N3A—C4A179.7 (2)C21B—C2B—N3B—C4B178.5 (2)
C2A—N3A—C4A—C5A1.6 (3)C2B—N3B—C4B—C5B0.9 (3)
C2A—N3A—C4A—S1A175.69 (16)C2B—N3B—C4B—S1B176.92 (17)
N3A—C4A—S1A—C41A8.0 (2)N3B—C4B—S1B—C41B0.8 (2)
C5A—C4A—S1A—C41A174.58 (19)C5B—C4B—S1B—C41B178.71 (19)
C4A—S1A—C41A—C42A93.88 (18)C4B—S1B—C41B—C42B99.22 (19)
S1A—C41A—C42A—C47A98.0 (2)S1B—C41B—C42B—C43B76.8 (3)
S1A—C41A—C42A—C43A79.1 (3)S1B—C41B—C42B—C47B102.4 (3)
C47A—C42A—C43A—C44A2.6 (4)C47B—C42B—C43B—C44B1.7 (4)
C41A—C42A—C43A—C44A174.6 (2)C41B—C42B—C43B—C44B177.5 (3)
C42A—C43A—C44A—C45A0.9 (4)C42B—C43B—C44B—C45B0.7 (4)
C43A—C44A—C45A—C46A1.6 (4)C43B—C44B—C45B—C46B1.1 (4)
C43A—C44A—C45A—Cl1A178.72 (19)C43B—C44B—C45B—Cl1B179.1 (2)
C44A—C45A—C46A—C47A2.2 (4)C44B—C45B—C46B—C47B2.0 (4)
Cl1A—C45A—C46A—C47A178.09 (19)Cl1B—C45B—C46B—C47B178.3 (2)
C43A—C42A—C47A—C46A1.9 (4)C45B—C46B—C47B—C42B0.9 (4)
C41A—C42A—C47A—C46A175.2 (2)C43B—C42B—C47B—C46B0.9 (4)
C45A—C46A—C47A—C42A0.4 (4)C41B—C42B—C47B—C46B178.4 (3)
N3A—C4A—C5A—C6A2.6 (3)N3B—C4B—C5B—C6B2.7 (4)
S1A—C4A—C5A—C6A174.73 (17)S1B—C4B—C5B—C6B175.17 (18)
N3A—C4A—C5A—C51A177.5 (2)N3B—C4B—C5B—C51B176.2 (2)
S1A—C4A—C5A—C51A5.2 (3)S1B—C4B—C5B—C51B6.0 (3)
C6A—C5A—C51A—O1A78.6 (3)C6B—C5B—C51B—O1B78.7 (3)
C4A—C5A—C51A—O1A101.4 (3)C4B—C5B—C51B—O1B102.4 (3)
C2A—N1A—C6A—C5A1.4 (3)C2B—N1B—C6B—C5B1.1 (3)
C2A—N1A—C6A—C61A178.9 (2)C2B—N1B—C6B—C61B179.2 (2)
C4A—C5A—C6A—N1A1.0 (3)C4B—C5B—C6B—N1B1.6 (4)
C51A—C5A—C6A—N1A179.1 (2)C51B—C5B—C6B—N1B177.3 (2)
C4A—C5A—C6A—C61A178.7 (2)C4B—C5B—C6B—C61B178.1 (2)
C51A—C5A—C6A—C61A1.3 (4)C51B—C5B—C6B—C61B3.0 (4)
Hydrogen-bond geometry (Å, º) top
Cg1A is the centroid of the N1A–C6A ring and Cg1B is the centroid of the N1B–C6B ring.
D—H···AD—HH···AD···AD—H···A
C41A—H4A1···N3A0.992.402.905 (3)111
C41B—H4B1···N3B0.992.382.902 (3)112
C51A—H5A2···S1A0.992.573.070 (3)111
C51B—H5B2···S1B0.992.583.081 (3)111
O1A—H1A···O1Bi0.841.892.696 (3)160
O1B—H1B···O1Aii0.841.902.707 (3)162
C51A—H5A1···Cg1Aiii0.992.693.433 (3)132
C51B—H5B1···Cg1Biv0.992.673.356 (3)127
C61A—H6A1···Cl1Av0.982.703.678 (3)176
Symmetry codes: (i) x+1, y1/2, z+1/2; (ii) x+2, y+1/2, z+1/2; (iii) x1, y, z; (iv) x+1, y, z; (v) x+2, y1/2, z+1/2.
4-[(4-Chlorobenzyl)sulfanyl]-5,6-dimethyl-2-phenylpyrimidine (4) top
Crystal data top
C19H17ClN2SDx = 1.363 Mg m3
Mr = 340.85Melting point: 395 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 14.4729 (8) ÅCell parameters from 5967 reflections
b = 11.4849 (5) Åθ = 2.8–28.7°
c = 10.3302 (6) ŵ = 0.36 mm1
β = 104.605 (5)°T = 100 K
V = 1661.60 (16) Å3Block, yellow
Z = 40.40 × 0.30 × 0.25 mm
F(000) = 712
Data collection top
Agilent Xcalibur Sapphire2, large Be window
diffractometer
3997 independent reflections
Radiation source: Enhance (Mo) X-ray Source3098 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.060
Detector resolution: 8.3359 pixels mm-1θmax = 28.7°, θmin = 2.8°
ω scansh = 1819
Absorption correction: analytical
[CrysAlis PRO (Agilent, 2012), based on expressions derived by Clark & Reid (1995)]
k = 1015
Tmin = 0.877, Tmax = 0.935l = 1313
10788 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H-atom parameters constrained
S = 1.02 w = 1/[σ2(Fo2) + (0.1116P)2]
where P = (Fo2 + 2Fc2)/3
3997 reflections(Δ/σ)max < 0.001
210 parametersΔρmax = 0.70 e Å3
0 restraintsΔρmin = 0.33 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cl10.43472 (4)0.14774 (4)0.00383 (5)0.03407 (18)
S10.76254 (4)0.50453 (4)0.34961 (6)0.03361 (19)
N10.90392 (12)0.81870 (14)0.56998 (17)0.0274 (4)
N30.79238 (12)0.73335 (14)0.38379 (17)0.0265 (4)
C20.83699 (14)0.82452 (17)0.4540 (2)0.0244 (4)
C40.81911 (14)0.62849 (17)0.4339 (2)0.0260 (4)
C50.89099 (14)0.61061 (17)0.5531 (2)0.0267 (4)
C60.93015 (14)0.71114 (17)0.6194 (2)0.0270 (4)
C210.81093 (14)0.94253 (16)0.39692 (19)0.0242 (4)
C220.85894 (15)1.04069 (18)0.4595 (2)0.0294 (5)
C230.83240 (16)1.15060 (17)0.4082 (2)0.0319 (5)
C240.75829 (16)1.16419 (17)0.2930 (2)0.0305 (5)
C250.71232 (15)1.06651 (17)0.2299 (2)0.0294 (5)
C260.73854 (14)0.95634 (17)0.2804 (2)0.0269 (4)
C410.67399 (16)0.56648 (16)0.2091 (2)0.0303 (5)
C420.61042 (15)0.46647 (17)0.1489 (2)0.0263 (4)
C430.53418 (17)0.43447 (18)0.1992 (2)0.0330 (5)
C440.47914 (16)0.33773 (18)0.1514 (2)0.0325 (5)
C450.50189 (14)0.27245 (16)0.05214 (19)0.0248 (4)
C460.57638 (16)0.30241 (18)0.0030 (2)0.0310 (5)
C470.63007 (16)0.40024 (18)0.0466 (2)0.0308 (5)
C510.92119 (17)0.49118 (17)0.6061 (2)0.0334 (5)
C611.00389 (16)0.7053 (2)0.7501 (2)0.0355 (5)
H220.9099101.0321800.5374390.035*
H230.8649131.2172190.4517260.038*
H240.7396861.2396500.2584510.037*
H250.6621481.0750020.1510140.035*
H260.7069590.8898430.2351700.032*
H430.5192720.4798920.2680870.040*
H440.4267200.3168180.1864070.039*
H460.5903970.2573230.0727260.037*
H470.6813610.4223070.0097860.037*
H4110.7051870.6004620.1428680.036*
H4120.6367360.6280650.2400450.036*
H5110.8782180.4635050.6592170.050*
H5120.9184180.4377970.5312480.050*
H5130.9866510.4942520.6626020.050*
H6110.9788220.6603620.8143630.053*
H6121.0615310.6674460.7369820.053*
H6131.0195860.7843010.7845120.053*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C420.0322 (10)0.0168 (9)0.0251 (10)0.0002 (8)0.0016 (8)0.0010 (7)
C430.0439 (13)0.0245 (11)0.0319 (11)0.0010 (9)0.0121 (10)0.0072 (8)
C440.0353 (12)0.0270 (10)0.0371 (12)0.0022 (9)0.0125 (9)0.0016 (9)
C450.0317 (10)0.0171 (9)0.0208 (9)0.0011 (7)0.0020 (7)0.0012 (7)
Cl10.0437 (3)0.0258 (3)0.0284 (3)0.0108 (2)0.0011 (2)0.00198 (19)
C460.0399 (12)0.0266 (10)0.0267 (11)0.0049 (9)0.0086 (9)0.0062 (8)
C470.0351 (11)0.0275 (10)0.0303 (11)0.0059 (9)0.0094 (9)0.0008 (8)
C410.0372 (11)0.0187 (9)0.0300 (11)0.0020 (8)0.0012 (9)0.0016 (8)
S10.0382 (3)0.0172 (3)0.0378 (3)0.0008 (2)0.0045 (2)0.0015 (2)
C40.0255 (10)0.0203 (9)0.0308 (11)0.0003 (8)0.0041 (8)0.0022 (8)
N30.0280 (9)0.0190 (8)0.0296 (9)0.0014 (7)0.0020 (7)0.0017 (6)
C20.0237 (9)0.0204 (9)0.0275 (10)0.0009 (7)0.0035 (8)0.0005 (8)
N10.0274 (9)0.0221 (8)0.0288 (9)0.0014 (7)0.0001 (7)0.0018 (7)
C60.0261 (10)0.0226 (10)0.0301 (10)0.0010 (8)0.0030 (8)0.0027 (8)
C50.0256 (10)0.0240 (10)0.0297 (10)0.0004 (8)0.0055 (8)0.0033 (8)
C610.0376 (12)0.0286 (11)0.0327 (12)0.0023 (9)0.0052 (9)0.0035 (9)
C510.0373 (12)0.0227 (10)0.0377 (13)0.0050 (8)0.0047 (10)0.0041 (8)
C210.0262 (10)0.0181 (9)0.0265 (10)0.0013 (7)0.0035 (8)0.0011 (7)
C260.0269 (10)0.0205 (9)0.0298 (11)0.0021 (8)0.0008 (8)0.0018 (8)
C250.0299 (10)0.0251 (10)0.0289 (11)0.0010 (8)0.0003 (8)0.0024 (8)
C240.0366 (12)0.0204 (9)0.0332 (11)0.0020 (8)0.0065 (9)0.0037 (8)
C230.0372 (12)0.0202 (10)0.0348 (12)0.0048 (8)0.0025 (9)0.0023 (8)
C220.0307 (10)0.0226 (10)0.0304 (11)0.0051 (8)0.0005 (8)0.0027 (8)
Geometric parameters (Å, º) top
C42—C431.383 (3)N1—C61.354 (2)
C42—C471.388 (3)C6—C51.388 (3)
C42—C411.505 (3)C6—C611.497 (3)
C43—C441.384 (3)C5—C511.501 (3)
C43—H430.9500C61—H6130.9800
C44—C451.375 (3)C61—H6120.9800
C44—H440.9500C61—H6110.9800
C45—C461.383 (3)C51—H5130.9800
C45—Cl11.7457 (19)C51—H5120.9800
C46—C471.388 (3)C51—H5110.9800
C46—H460.9500C21—C261.392 (3)
C47—H470.9500C21—C221.395 (3)
C41—S11.821 (2)C26—C251.384 (3)
C41—H4120.9900C26—H260.9500
C41—H4110.9900C25—C241.381 (3)
S1—C41.759 (2)C25—H250.9500
C4—N31.329 (2)C24—C231.395 (3)
C4—C51.412 (3)C24—H240.9500
N3—C21.343 (2)C23—C221.385 (3)
C2—N11.339 (3)C23—H230.9500
C2—C211.488 (3)C22—H220.9500
C43—C42—C47118.46 (19)C5—C6—C61121.15 (18)
C43—C42—C41120.66 (19)C6—C5—C4115.37 (18)
C47—C42—C41120.8 (2)C6—C5—C51122.34 (19)
C42—C43—C44121.42 (19)C4—C5—C51122.28 (19)
C42—C43—H43119.3C6—C61—H613109.5
C44—C43—H43119.3C6—C61—H612109.5
C45—C44—C43118.64 (19)H613—C61—H612109.5
C45—C44—H44120.7C6—C61—H611109.5
C43—C44—H44120.7H613—C61—H611109.5
C44—C45—C46121.94 (18)H612—C61—H611109.5
C44—C45—Cl1118.43 (16)C5—C51—H513109.5
C46—C45—Cl1119.63 (15)C5—C51—H512109.5
C45—C46—C47118.11 (19)H513—C51—H512109.5
C45—C46—H46120.9C5—C51—H511109.5
C47—C46—H46120.9H513—C51—H511109.5
C42—C47—C46121.4 (2)H512—C51—H511109.5
C42—C47—H47119.3C26—C21—C22119.16 (18)
C46—C47—H47119.3C26—C21—C2120.47 (17)
C42—C41—S1105.39 (13)C22—C21—C2120.37 (18)
C42—C41—H412110.7C25—C26—C21120.33 (19)
S1—C41—H412110.7C25—C26—H26119.8
C42—C41—H411110.7C21—C26—H26119.8
S1—C41—H411110.7C24—C25—C26120.73 (19)
H412—C41—H411108.8C24—C25—H25119.6
C4—S1—C41102.96 (9)C26—C25—H25119.6
N3—C4—C5123.31 (18)C25—C24—C23119.13 (19)
N3—C4—S1119.16 (15)C25—C24—H24120.4
C5—C4—S1117.53 (15)C23—C24—H24120.4
C4—N3—C2116.31 (17)C22—C23—C24120.50 (19)
N1—C2—N3125.82 (18)C22—C23—H23119.7
N1—C2—C21117.00 (17)C24—C23—H23119.7
N3—C2—C21117.17 (17)C23—C22—C21120.1 (2)
C2—N1—C6116.97 (17)C23—C22—H22119.9
N1—C6—C5122.16 (19)C21—C22—H22119.9
N1—C6—C61116.69 (18)
C47—C42—C43—C441.1 (3)C2—N1—C6—C61179.07 (18)
C41—C42—C43—C44175.33 (19)N1—C6—C5—C42.6 (3)
C42—C43—C44—C450.3 (3)C61—C6—C5—C4177.25 (19)
C43—C44—C45—C461.6 (3)N1—C6—C5—C51178.82 (19)
C43—C44—C45—Cl1177.88 (17)C61—C6—C5—C511.3 (3)
C44—C45—C46—C471.3 (3)N3—C4—C5—C62.6 (3)
Cl1—C45—C46—C47178.15 (16)S1—C4—C5—C6176.93 (15)
C43—C42—C47—C461.4 (3)N3—C4—C5—C51178.8 (2)
C41—C42—C47—C46175.0 (2)S1—C4—C5—C511.6 (3)
C45—C46—C47—C420.2 (3)N1—C2—C21—C26176.66 (19)
C43—C42—C41—S185.1 (2)N3—C2—C21—C264.3 (3)
C47—C42—C41—S191.3 (2)N1—C2—C21—C223.5 (3)
C42—C41—S1—C4169.05 (14)N3—C2—C21—C22175.58 (18)
C41—S1—C4—N31.80 (19)C22—C21—C26—C252.3 (3)
C41—S1—C4—C5177.79 (16)C2—C21—C26—C25177.86 (18)
C5—C4—N3—C20.8 (3)C21—C26—C25—C241.0 (3)
S1—C4—N3—C2178.79 (14)C26—C25—C24—C230.5 (3)
C4—N3—C2—N11.4 (3)C25—C24—C23—C220.7 (3)
C4—N3—C2—C21177.60 (18)C24—C23—C22—C210.6 (3)
N3—C2—N1—C61.3 (3)C26—C21—C22—C232.1 (3)
C21—C2—N1—C6177.61 (18)C2—C21—C22—C23178.0 (2)
C2—N1—C6—C50.8 (3)
Hydrogen-bond geometry (Å, º) top
Cg2 is the centroid of the C21–C26 ring.
D—H···AD—HH···AD···AD—H···A
C26—H26···Cl1i0.952.763.502 (2)135
C47—H47···Cg2ii0.952.563.470 (2)161
C51—H511···Cg2iii0.992.613.557 (2)162
Symmetry codes: (i) x+1, y+1, z; (ii) x, y+3/2, z1/2; (iii) x, y+3/2, z+1/2.
Cell survival (%) after 48 and 72 h incubation with (3) and (4) used at a concentration of 100 µM top
CompoundHeLaK562CFPACHUVEC
Incubation48 h72 h48 h72 h48 h72 h48 h
(3)4012921
(4)67398743525658
IC50 values for compounds (3) and (4) in different cell lines after 72 h incubation (48 h for HUVEC) top
CompoundHUVECCFPACK562HeLa
(3)15 µM38 µM17 µM32 µM
(4)>100 µM>100 µM100 µM55 µM
 

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