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Two sulfanyl­idene-1,2,3,4-tetra­hydro­pyrimidine derivatives have been synthesized using acid-catalysed cyclo­condensation reactions between thio­urea, ethyl 3-oxo­butano­ate and substituted benzaldehydes. In each of ethyl (4RS)-4-(4-benzyl­oxy­phen­yl)-6-methyl-2-sulfanyl­idene-1,2,3,4-tetra­hydro­py­rimi­dine-5-carboxyl­ate, C21H22N2O3S, (I), where Z' = 2, and ethyl (4RS)-4-(4-meth­oxy­phen­yl)-6-methyl-2-sulfanyl­idene-1,2,3,4-tetra­hy­dro­pyrimidine-5-carboxyl­ate 0.105-hydrate, C15H18N2O3S·0.105H2O, (II), the reduced pyrimidine ring adopts a con­formation inter­mediate between the boat, screw-boat and twist-boat forms. In (I) and (II), a combination of N-H...O and N-H...S hydrogen bonds links the organic mol­ecules into ribbons containing alternating R22(8) and R44(20) rings. In (I), the ribbon contains three types of ring, viz. two different R22(8) rings which are both centrosymmetric and R44(20) rings which are not centrosymmetric. In (II), the ribbon contains two types of ring, both of which are centrosymmetric. In compound (II), the ribbons enclose continuous channels which run along the twofold rotation axes in the space group C2/c, and the partial-occupancy water mol­ecules lie within these channels. Structural comparisons are made with a number of related compounds.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229614026758/sk3572sup1.cif
Contains datablocks global, I, II

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229614026758/sk3572Isup2.hkl
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229614026758/sk3572IIsup3.hkl
Contains datablock II

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229614026758/sk3572Isup4.cml
Supplementary material

CCDC references: 1037871; 1037870

Introduction top

Multicomponent reactions are of importance in synthetic chemistry because of their ability to produce quite complex molecular products from simple precursors in a single step. The multicomponent synthesis of 3,4-di­hydro­pyrimidones or 3,4-di­hydro­pyrimidinthio­nes using urea or thio­urea, a keto ester and an aldehyde, catalysed by mineral acids, as developed by Biginelli (1893), is of considerable importance mainly because of the various biological activities shown by pyrimidine derivatives, such as anti­viral (Hurst & Hull, 1961), anti­tumour (El-Hashash et al., 1993) and anti­microbial (Karale et al., 2002), as well as herbicidal and plant growth regulator activities (Chambhare et al., 2003) and action as calcium channel blockers (Manjula et al., 2004). A number of variations of the original Biginelli protocol have been developed in recent years, including the use of ionic liquids as the reaction solvent, which also act as the catalytic agent (Peng & Deng, 2001), of ultrasound irradiation (Li et al., 2003), of simple metal salts as the catalytic agent (Maiti et al., 2003) or of microwave irradiation (Youssef & Amin, 2012).

We report here the molecular structures and supra­molecular assembly of ethyl (4RS)-4-(4-benzyl­oxyphenyl)-6-methyl-2-sulfanyl­idene-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate, (I) (Fig. 1), which was synthesized in good yields using three-component cyclo­condensation reactions between thio­urea, ethyl 3-oxo­butano­ate and 4-benzyl­oxybenzaldehyde, catalysed by silicon tetra­chloride acting as a Lewis acid. We have also taken the opportunity to redetermine the structure of the closely related ethyl (4RS)-4-(4-methooxyphenyl)-6-methyl-2-sulfanyl­idene-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate, (II) (Fig. 2), using diffraction data collected at 200 K. The structure of (II) has been reported recently (Nayak et al., 2010) using data collected at 292 K, but in our hands this compound crystallized as a 0.105-hydrate, whereas the previous report made no mention of any water component. The redetermination, as the partial hydrate, reported here converged with significantly lower R values (R1 and wR2 = 0.0359 and 0.0958, respectively, as opposed to 0.0468 and 0.1376), despite the use of a substanti­ally larger data set (4023 unique reflections, as opposed to 2907). More importantly, however, our re-analysis of the supra­molecular assembly in (II) has revealed some inter­esting features which appear to have been overlooked in the earlier report. The structures of a number of related compounds (see Scheme 1) have been reported in recent years; some of these have been the subject of short single-structure reports which usually contain only a very brief structural description but, in general, no detailed analysis of the hydrogen bonding has been reported. Consequently, it seemed worthwhile to draw together these scattered results for comparative purposes, in the hope that some general patterns may be discernible. The purposes of the present study are, firstly, the determination of the molecular and supra­molecular structure of compound (I), secondly, the re-inter­pretation of the supra­molecular assembly in compound (II), thirdly, the comparison of the supra­molecular assembly in compounds (III)–(XIV) (see Scheme 1) with that in (I) and (II); and fourthly, to consider the differences in supra­molecular assembly in some analogues, i.e. (XV)–(XVII) (see Scheme 2), in which only one N—H bond is present in each molecule.

Experimental top

Synthesis and crystallization top

For the synthesis of compounds (I) and (II), a mixture of thio­urea and ethyl 3-oxo­butano­ate (0.01 mol of each) was added at ambient temperature to a solution of the appropriately substituted benzaldehyde (0.01 mol) in aceto­nitrile—N,N-di­methyl­formamide (2:1 v/v, 50 ml). The reaction mixtures were cooled to 273 K, silicon tetra­chloride (0.9 mmol) was added dropwise and the mixtures were stirred at ambient temperature for 24 h. Ice-cold water (100 ml) was added and each mixtures was stirred for a further 30 min. The resulting solid products were collected by filtration, washed with water and dried under reduced pressure. Compound (I): yield 73%, m.p. 433–435 K; analysis found: C 65.9, H 5.7, N 7.4%; C21H22N2O3S requires: C 65.9, H 5.8, N 7.3%. Compound (II): yield 70%, m.p. 413–415 K; analysis found: C 58.8, H 5.8, N 9.1%; C15H18N2O3S requires: C 58.8, H 5.9, N 9.1%. Colourless crystals for suitable single-crystal X-ray diffraction were grown by slow evaporation, at ambient temperature and in the presence of air, from solutions in chloro­form–methanol (9:1 v/v).

Refinement top

Crystal data, data collection and structure refinement details are summarized in Table 1. All H atoms were located in difference maps. H atoms bonded to C atoms were then treated as riding atoms in geometrically idealized positions, with C—H = 0.95 (aromatic), 0.98 (CH3), 0.99 (CH2) or 1.00 Å (aliphatic C—H), and with Uiso(H) = kUeq(C), where k = 1.5 for the methyl groups, which were permitted to rotate but not to tilt, and 1.2 for all other H atoms bonded to C atoms. For H atoms bonded to N atoms, the atomic coordinates were refined with Uiso(H) = 1.2Ueq(N), giving the N—H distances shown in Table 3. For compound (I), three low-angle reflections (001, 111 and 121), and for compound (II), one low-angle reflection (002), which had all been attenuated by the beam stop, were omitted from the refinements. Examination of the refined structure of (I) showed that this structure contained no solvent-accessible voids. However, the structure of (II) contains a total void volume of 350.7 Å3 per unit cell, ca 10.8% of the total cell volume, arranged in the form of continuous channels aligned along the twofold rotation axes (Fig. 6). The largest peak in the difference map, i.e. 0.88 e Å-3, was located on a twofold rotation axis within the channel and distant by ca 2.97 Å from the two symmetry-related atoms of type O441. Using the CIF and .fcf files from this refinement, the SQUEEZE tool (Spek, 2015) within PLATON identified a total of 11.4 additional electrons per unit cell located in the solvent-accessible voids, equivalent to ca 0.14 molecules of water per molecule of the organic component. Hence this residual peak was modeled as the O atom, denoted O71, of a partial-occupancy water molecule; the H atoms associated with this O atom could not be located in difference maps but were placed in calculated positions with O—H = 0.935 Å and Uiso(H) = 1.5Uiso(O). Inclusion of this water molecule in the refinement then gave a value of 0.105 (5) molecules of water per molecule of the organic component, close to the value indicated by SQUEEZE, and there were no significant features in the final difference map. A further application of the SQUEEZE procedure at this point indicated that essentially all of the additional electron density had been accounted for by the partially occupied water molecule.

Results and discussion top

Compound (I) crystallizes in the space group P1 with Z' = 2. It will be convenient to refer to the molecules of compound (I) which contain atoms S121 and S221 (cf. Fig. 1) as types 1 and 2, respectively. The two independent molecules in the selected asymmetric unit for (I) are related by an approximate translation of c/2. However, the minor but significant differences between the corresponding pairs of geometrical parameters for the two molecules (Tables 2 and 3) appear to preclude the possibility of their being geometrically identical, and a detailed comparison of the atomic coordinates for corresponding pairs of atoms shows that the translational relationship is, indeed, approximate but not exact. The ADDSYM routine within PLATON (Spek, 2009) confirms that the present reduced cell is the correct one. Nonetheless, of the reflections labelled `observed' for (II), those having odd values of l are in general significantly weaker than those having even values of l.

Each of the independent molecules in compounds (I) and (II) contains a stereogenic centre, at atoms Cx4 (x = 1 or 2 hereafter) in (I), and at atom C4 in (II). The reference molecules were all selected at those having the R configuration at these atoms, but the centrosymmetric space groups confirm that compounds (I) and (II) both crystallize as racemic mixtures.

The reduced pyrimidine rings are all nonplanar and all have very similar ring-puckering (Cremer & Pople, 1975) parameters (Table 2), which indicate ring conformations inter­mediate between the boat, screw-boat and twist-boat forms. The ideal values of the ring-puckering angles for these three forms (Boeyens, 1978) are θ = 90.0, 67.5 and 90.0°, respectively, and ϕ = (60k)° for the boat form and ϕ = (60k + 30)° for the other two forms, where k represents an integer. The conformations adopted by the ester units are also similar, as indicated by the relevant torsion angles, as are the orientations of the aryl rings bonded to the reduced pyrimidine rings (Table 2).

The alk­oxy C atoms, i.e. Cx77 in (I) and C441 (II), are nearly coplanar with the C41–C46 and Cx41—Cx46 aryl rings, respectively, with displacements from these ring planes of 0.148 (2) and 0.048 (2) Å for atoms C177 and C277, respectively, in (I), and of 0.220 (2) Å in (II). Associated with this near coplanarity, the corresponding pairs of exocyclic C—C—O angles in (II) and (III) all differ by ca 10°, as is often observed in such circumstances (Seip & Seip, 1973; Ferguson et al., 1996).

The supra­molecular assembly in compounds (I) and (II) is determined by a combination of N—H···O and N—H···S hydrogen bonds (Table 3), where in all cases the N—H···O hydrogen bonds utilize the carbonyl O atom of the ester unit as the acceptor. However, the structures contain neither any aromatic ππ stacking inter­actions nor any significant C—H···π(arene) inter­actions. The only reasonably short C—H···π(arene) contacts either involve (where Cg represents the ring centroid concerned); in neither case are these contacts likely to be of structural significance (Riddell & Rogerson, 1996, 1997; Wood et al., 2009).

Within the selected asymmetric unit of (I), the two molecules are linked by an N—H···O hydrogen bond (Table 3), and these two-molecule units are linked by a second N—H···O hydrogen bond to form a C22(12) (Bernstein et al., 1995) chain running parallel to the [001] direction (Fig. 3). Inversion-related pairs of these chains are linked by the two independent N—H···S hydrogen bonds to form a ribbon. Within the ribbon, R22(8) rings involving only type 1 molecules are centred at (0, 1, n+1/2) and R22(8) rings involving only type 2 molecules are centred at (0, 1, n), where n represents an integer (Fig. 3). Between each pair of R22(8) rings there is a noncentrosymmetric R44(20) ring which involves four molecules, two of type 1 and two of type 2. The mid-points of the R44(20) rings are close to (0, 1, 0.5n+1/4), but these points are not crystallographic centres of inversion, merely the mid-points between pairs of genuine inversion centres. The centrosymmetric nature of both types of R22(8) ring confirms that only one type of R44(20) ring is present, giving a ribbon containing three types of ring in total.

Molecules of (II) which are related by translation are linked by N—H···O hydrogen bonds to form a C(6) (Bernstein et al., 1995) chain running parallel to the [010] direction (Fig. 4). Inversion-related pairs of such chains are linked by the N—H···S hydrogen bonds to form a ribbon containing edge-fused centrosymmetric rings in which R22(8) rings centred at (3/4, n+1/4, 0) and the R44(20) rings are centred at (3/4, n-1/4, 0), where n again represents an integer. Four ribbons of this type pass through each unit cell and they are arranged such that they enclose continuous channels, four per unit cell, running along the twofold rotation axes and having a mean diameter of ca 3.9 Å (Fig. 5). The partial-occupancy water molecules are located in these channels, weakly linked to the organic ocmponents by O—H···O hydrogen bonds (Table 3). The earlier report (Nayak et al., 2010) on compound (II) did not mention the presence of the stereogenic centre, nor were the graph-set motifs defining the hydrogen bonding specified. The supra­molecular structure was described as `sheet-like' when, in fact, it takes the form of a ribbon, as in compound (I). More importantly, the earlier report contains no mention of the mutual arrangement of the ribbons, forming the channels (Fig. 5), even though these are clearly apparent in the ambient-temperature structure.

We turn now to a comparison of the supra­molecular assembly in some related compounds (III)–(XIV) (see Scheme 1) with those reported here for compounds (I) and (II). Compounds (III)–(VI) are all isostructural (Qin et al., 2006; Nayak et al., 2009, 2010) and all form ribbons containing alternating R22(8) and R44(20) rings, just as in (II). Entirely similar ribbons are present also in the structures of compounds (VII) and (VIII) (Nayak et al.,2010), (XI) (Begum & Vasundhara, 2006), (XIII) (Begum & Vasundhara, 2009) and (XIV) (Li et al., 2007), although those in (XII) are weakly linked into sheets by C—H···O hydrogen bonds in which one of the nitro group O atoms acts as the acceptor. The supra­molecular assembly in compounds (I)–(VIII), (XI), (XIII) and (XIV) thus involves, in every case, the linkage of inversion-related pairs of molecules by N—H···S hydrogen bonds and the linkage of molecules related by translation by means of N—H···O hydrogen bonds, to give ribbons containing alternating R22(8) and R44(20) rings.

Exceptions to this pattern are found in compounds (IX) and (X) (Nayak et al., 2010) where re-analysis of the structures shows that N—H···O hydrogen bonds are absent, and the structure contains ribbons of edge-fused R22(8) rings built only from N—H···S hydrogen bonds. Another exception is provided by the 4-cyano derivative (XII) which crystallizes with Z' = 2 (Wu et al., 2009). The original structure report described the supra­molecular assembly as three-dimensional, but re-analysis of this structure using the deposited atomic coordinates shows that it is, in fact, one-dimensional. Each of the two independent molecular types forms a C(6) chain built from N—H···O hydrogen bonds linking molecules related by translation, but only one N—H···S hydrogen bond is present, leading to the formation of a ribbon in which R44(20) rings alternate with R44(24) rings alternate, although R22(8) rings are absent (Fig. 6); it is of inter­est that the cyano groups play no part in the hydrogen bonding.

Finally, it is of inter­est to note the effect of substitution at one of the pyrimidine N atoms, as in compounds (XV)–(XVII) (see Scheme 2) so that there are now two good hydrogen-bond acceptors present in each molecule, the doubly-bonded O and S atoms, but only one N—H donor. In each of compounds (XV) (Kumaradhas et al., 2007) and (XVI) (Fun et al., 2008), inversion-related pairs of molecules are linked by N—H···S hydrogen bonds into R22(8) dimers. Compound (XVII) (Fun et al., 2009) crystallizes with Z' = 4; two of the four independent molecules are linked by N—H···S hydrogen bonds to form a noncentrosymmetric R22(8) dimer, while each of the other two molecules forms a centrosymmetric R22(8) dimer with an inversion-related analogue. Thus, in each of compounds (XV)–(XVII), N—H···S hydrogen bonds are present forming exactly the same type of motif as in compounds (I)–(XIV), but N—H···O hydrogen bonds are absent, so that they resemble compounds (IX) and (X), rather than compounds (I)–(VIII), (XI), (XIII) and (XIV).

Computing details top

For both compounds, data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009) and SHELXL2014 (Sheldrick, 2015).

Figures top
[Figure 1] Fig. 1. The molecular structures of the R enantiomers of the two independent molecules in compound (I), showing the atom-labelling schemes, for (a) a type 1 molecule and (b) a type 2 molecule. Displacement ellipsoids are drawn at the 30% probability level.
[Figure 2] Fig. 2. The molecular structure of the R enantiomer of compound (II), showing partial-occupancy water molecule and the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level.
[Figure 3] Fig. 3. A stereoview of part of the crystal structure of compound (III), showing the formation of a hydrogen-bonded ribbon parallel to the [001] direction containing two types of centrosymmetric R22(8) ring and a single type of R44(20) ring, which is noncentrosymmetric. Hydrogen bonds are shown as dashed lines and, for the sake of clarity, H atoms bonded to C atoms have been omitted.
[Figure 4] Fig. 4. A stereoview of part of the crystal structure of compound (II), showing the formation of a hydrogen-bonded ribbon parallel to the [010] direction in which centrosymmetric R22(8) and R44(20) rings alternate. Hydrogen bonds are shown as dashed lines and, for the sake of clarity, H atoms bonded to C atoms have been omitted.
[Figure 5] Fig. 5. A space-filling representation of part of the crystal structure of compound (II), viewed in projection along the [010] direction, showing the continuous channels along the twofold rotation axes. The origin is at the lower left-hand corner of the unit-cell projection with the c axis vertical. For the sake of clarity, the partial-occupancy water molecules have been omitted.
[Figure 6] Fig. 6. A stereoview of part of the crystal structure of compound (X11), showing the formation of a hydrogen-bonded ribbon parallel to the [001] direction containing alternating R44(20) and R44(24) rings. The original atomic coordinates (Wu et al., 2009) have been used. Hydrogen bonds are shown as dashed lines and, for the sake of clarity, H atoms bonded to C atoms have been omitted.
(I) Ethyl (4RS)-4-(4-benzyloxyphenyl)-6-methyl-2-sulfanylidene-1,2,3,4-tetrahydropyrimidine-5-carboxylate top
Crystal data top
C21H22N2O3SZ = 4
Mr = 382.47F(000) = 808
Triclinic, P1Dx = 1.336 Mg m3
a = 11.0094 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 12.7915 (5) ÅCell parameters from 9459 reflections
c = 14.5418 (5) Åθ = 1.4–28.4°
α = 85.567 (2)°µ = 0.19 mm1
β = 83.815 (2)°T = 200 K
γ = 69.150 (2)°Block, colourless
V = 1900.96 (12) Å30.46 × 0.45 × 0.35 mm
Data collection top
Bruker APEXII CCD
diffractometer
7596 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.020
ϕ and ω scansθmax = 28.4°, θmin = 2.1°
Absorption correction: multi-scan
(SADABS; Sheldrick, 2003)
h = 1414
Tmin = 0.833, Tmax = 0.935k = 1717
33717 measured reflectionsl = 1919
9456 independent reflections
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.118 w = 1/[σ2(Fo2) + (0.0578P)2 + 0.7328P]
where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
9456 reflectionsΔρmax = 0.55 e Å3
503 parametersΔρmin = 0.32 e Å3
Crystal data top
C21H22N2O3Sγ = 69.150 (2)°
Mr = 382.47V = 1900.96 (12) Å3
Triclinic, P1Z = 4
a = 11.0094 (4) ÅMo Kα radiation
b = 12.7915 (5) ŵ = 0.19 mm1
c = 14.5418 (5) ÅT = 200 K
α = 85.567 (2)°0.46 × 0.45 × 0.35 mm
β = 83.815 (2)°
Data collection top
Bruker APEXII CCD
diffractometer
9456 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 2003)
7596 reflections with I > 2σ(I)
Tmin = 0.833, Tmax = 0.935Rint = 0.020
33717 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0400 restraints
wR(F2) = 0.118H atoms treated by a mixture of independent and constrained refinement
S = 1.04Δρmax = 0.55 e Å3
9456 reflectionsΔρmin = 0.32 e Å3
503 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N110.21431 (12)0.71459 (9)0.43348 (7)0.0238 (2)
H110.2173 (16)0.6941 (14)0.3804 (12)0.029*
C120.13365 (12)0.82098 (10)0.45360 (8)0.0200 (2)
S1210.04251 (3)0.90348 (3)0.37186 (2)0.02719 (9)
N130.13064 (11)0.85040 (9)0.53884 (7)0.0199 (2)
H130.0773 (16)0.9155 (14)0.5548 (11)0.024*
C140.22348 (12)0.78615 (10)0.60637 (8)0.0189 (2)
H140.17670.79800.66970.023*
C150.26548 (12)0.66310 (10)0.58756 (8)0.0199 (2)
C160.26515 (13)0.63180 (10)0.50101 (8)0.0216 (2)
C1410.33708 (12)0.82781 (10)0.60311 (8)0.0199 (2)
C1420.45216 (14)0.77920 (11)0.54866 (9)0.0265 (3)
H1420.46080.71730.51310.032*
C1430.55523 (14)0.81832 (12)0.54454 (10)0.0296 (3)
H1430.63350.78290.50710.035*
C1440.54337 (13)0.90929 (11)0.59525 (9)0.0251 (3)
C1450.42779 (14)0.96038 (11)0.64912 (10)0.0280 (3)
H1450.41811.02390.68300.034*
C1460.32672 (13)0.91929 (11)0.65367 (9)0.0252 (3)
H1460.24900.95400.69190.030*
O1440.63842 (10)0.95429 (8)0.59768 (8)0.0328 (2)
C1770.76374 (15)0.90049 (13)0.54925 (11)0.0345 (3)
H17A0.81180.95330.54110.041*
H17B0.75110.88200.48700.041*
C1710.84438 (14)0.79534 (12)0.59897 (10)0.0289 (3)
C1720.87700 (16)0.80058 (13)0.68762 (11)0.0353 (3)
H1720.84650.87040.71660.042*
C1730.95335 (17)0.70546 (15)0.73430 (12)0.0421 (4)
H1730.97510.71040.79490.051*
C1740.99774 (16)0.60387 (15)0.69327 (13)0.0435 (4)
H1741.04920.53840.72570.052*
C1750.96750 (18)0.59740 (15)0.60544 (15)0.0491 (4)
H1750.99870.52730.57680.059*
C1760.89194 (17)0.69214 (15)0.55836 (12)0.0419 (4)
H1760.87220.68660.49730.050*
C1510.30497 (13)0.58793 (11)0.66841 (9)0.0228 (3)
O1510.29911 (11)0.62057 (8)0.74539 (6)0.0313 (2)
O1520.34668 (12)0.47914 (8)0.65164 (7)0.0381 (3)
C1530.37915 (19)0.40045 (13)0.73079 (10)0.0397 (4)
H13A0.30280.41470.77710.048*
H13B0.45200.40840.76060.048*
C1540.4174 (3)0.28690 (15)0.69562 (13)0.0701 (7)
H14A0.43260.23180.74780.105*
H14B0.49760.27140.65420.105*
H14C0.34750.28220.66160.105*
C1610.31257 (17)0.51619 (11)0.46509 (10)0.0350 (4)
H16A0.25310.47740.49020.053*
H16B0.40020.47460.48420.053*
H16C0.31550.52090.39740.053*
N210.22339 (11)0.71506 (9)0.06713 (7)0.0220 (2)
H210.2321 (16)0.6960 (13)0.1221 (12)0.026*
C220.13871 (12)0.82050 (10)0.04733 (8)0.0194 (2)
S2210.05673 (4)0.90568 (3)0.13169 (2)0.02650 (9)
N230.12534 (11)0.84730 (9)0.04004 (7)0.0199 (2)
H230.0713 (16)0.9119 (14)0.0548 (11)0.024*
C240.21315 (12)0.78351 (10)0.11050 (8)0.0184 (2)
H240.16130.79220.17210.022*
C250.26335 (12)0.66080 (10)0.08851 (8)0.0189 (2)
C260.27199 (12)0.63140 (10)0.00015 (8)0.0201 (2)
C2410.32089 (12)0.83063 (10)0.11486 (8)0.0187 (2)
C2420.43286 (13)0.79839 (11)0.05446 (9)0.0228 (3)
H2420.44480.74220.01180.027*
C2430.52799 (13)0.84623 (11)0.05485 (9)0.0247 (3)
H2430.60370.82330.01260.030*
C2440.51157 (13)0.92773 (11)0.11736 (9)0.0230 (3)
C2450.39908 (14)0.96204 (11)0.17751 (9)0.0262 (3)
H2450.38661.01900.21950.031*
C2460.30527 (13)0.91367 (11)0.17641 (9)0.0245 (3)
H2460.22910.93730.21820.029*
O2440.60001 (10)0.97809 (8)0.12656 (7)0.0294 (2)
C2770.71754 (14)0.94740 (12)0.06555 (10)0.0307 (3)
H27A0.76151.00190.07020.037*
H27B0.69440.95210.00110.037*
C2710.81097 (14)0.83195 (12)0.08616 (10)0.0289 (3)
C2720.85152 (16)0.79980 (14)0.17437 (11)0.0378 (3)
H2720.81950.85100.22280.045*
C2730.93913 (18)0.69246 (16)0.19196 (14)0.0485 (4)
H2730.96630.67020.25250.058*
C2740.98655 (17)0.61835 (15)0.12150 (16)0.0502 (5)
H2741.04540.54480.13390.060*
C2750.94917 (17)0.65027 (15)0.03352 (14)0.0461 (4)
H2750.98330.59940.01500.055*
C2760.86178 (15)0.75666 (14)0.01583 (12)0.0372 (3)
H2760.83620.77860.04510.045*
C2510.29512 (13)0.58390 (10)0.16949 (8)0.0214 (2)
O2510.28022 (12)0.61566 (8)0.24779 (7)0.0362 (3)
O2520.34081 (11)0.47541 (8)0.15133 (6)0.0297 (2)
C2530.36861 (16)0.39552 (11)0.22972 (9)0.0305 (3)
H23A0.28830.40530.27130.037*
H23B0.43450.40650.26540.037*
C2540.4194 (2)0.28144 (13)0.19146 (12)0.0538 (5)
H24A0.43490.22490.24250.081*
H24B0.50130.27140.15320.081*
H24C0.35520.27320.15350.081*
C2610.32595 (16)0.51656 (11)0.03761 (9)0.0305 (3)
H26A0.26060.48040.02570.046*
H26B0.40460.47190.00730.046*
H26C0.34800.52230.10450.046*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N110.0324 (6)0.0195 (5)0.0140 (5)0.0017 (5)0.0027 (4)0.0028 (4)
C120.0200 (6)0.0200 (6)0.0181 (5)0.0051 (5)0.0003 (5)0.0012 (4)
S1210.02919 (19)0.02468 (17)0.02029 (16)0.00067 (13)0.00590 (13)0.00103 (12)
N130.0200 (5)0.0177 (5)0.0186 (5)0.0018 (4)0.0016 (4)0.0037 (4)
C140.0217 (6)0.0171 (5)0.0159 (5)0.0038 (5)0.0021 (4)0.0019 (4)
C150.0239 (6)0.0176 (6)0.0171 (5)0.0059 (5)0.0021 (5)0.0012 (4)
C160.0267 (6)0.0180 (6)0.0176 (6)0.0046 (5)0.0023 (5)0.0012 (4)
C1410.0229 (6)0.0183 (6)0.0176 (5)0.0056 (5)0.0043 (5)0.0004 (4)
C1420.0274 (7)0.0264 (7)0.0265 (6)0.0094 (6)0.0000 (5)0.0091 (5)
C1430.0256 (7)0.0350 (7)0.0283 (7)0.0110 (6)0.0022 (5)0.0069 (6)
C1440.0267 (7)0.0243 (6)0.0258 (6)0.0099 (5)0.0098 (5)0.0044 (5)
C1450.0302 (7)0.0220 (6)0.0318 (7)0.0063 (5)0.0094 (6)0.0055 (5)
C1460.0239 (7)0.0224 (6)0.0269 (6)0.0033 (5)0.0046 (5)0.0074 (5)
O1440.0289 (5)0.0302 (5)0.0434 (6)0.0141 (4)0.0092 (5)0.0008 (4)
C1770.0294 (8)0.0407 (8)0.0372 (8)0.0184 (7)0.0045 (6)0.0069 (6)
C1710.0241 (7)0.0361 (8)0.0300 (7)0.0157 (6)0.0002 (5)0.0013 (6)
C1720.0347 (8)0.0354 (8)0.0344 (8)0.0092 (7)0.0037 (6)0.0067 (6)
C1730.0378 (9)0.0509 (10)0.0334 (8)0.0105 (8)0.0050 (7)0.0016 (7)
C1740.0309 (8)0.0394 (9)0.0567 (11)0.0096 (7)0.0051 (7)0.0071 (8)
C1750.0416 (10)0.0353 (9)0.0683 (12)0.0082 (8)0.0055 (9)0.0144 (8)
C1760.0398 (9)0.0480 (10)0.0404 (9)0.0159 (8)0.0042 (7)0.0130 (7)
C1510.0281 (7)0.0206 (6)0.0190 (6)0.0073 (5)0.0039 (5)0.0010 (5)
O1510.0468 (6)0.0272 (5)0.0173 (4)0.0081 (5)0.0075 (4)0.0024 (4)
O1520.0681 (8)0.0191 (5)0.0203 (5)0.0049 (5)0.0129 (5)0.0008 (4)
C1530.0618 (11)0.0275 (7)0.0221 (7)0.0051 (7)0.0121 (7)0.0040 (5)
C1540.129 (2)0.0265 (9)0.0356 (9)0.0049 (11)0.0058 (11)0.0046 (7)
C1610.0575 (10)0.0190 (6)0.0224 (6)0.0036 (6)0.0087 (6)0.0053 (5)
N210.0288 (6)0.0192 (5)0.0145 (5)0.0037 (4)0.0024 (4)0.0022 (4)
C220.0200 (6)0.0183 (5)0.0204 (6)0.0070 (5)0.0025 (5)0.0009 (4)
S2210.03222 (19)0.02175 (16)0.02254 (16)0.00391 (13)0.00978 (13)0.00005 (12)
N230.0199 (5)0.0169 (5)0.0203 (5)0.0023 (4)0.0032 (4)0.0036 (4)
C240.0199 (6)0.0184 (5)0.0156 (5)0.0049 (5)0.0012 (4)0.0026 (4)
C250.0215 (6)0.0171 (5)0.0171 (5)0.0051 (5)0.0019 (4)0.0017 (4)
C260.0223 (6)0.0182 (6)0.0181 (5)0.0049 (5)0.0018 (5)0.0014 (4)
C2410.0210 (6)0.0176 (5)0.0169 (5)0.0054 (5)0.0037 (4)0.0012 (4)
C2420.0246 (7)0.0240 (6)0.0205 (6)0.0081 (5)0.0015 (5)0.0065 (5)
C2430.0229 (6)0.0291 (7)0.0227 (6)0.0096 (5)0.0003 (5)0.0044 (5)
C2440.0236 (6)0.0217 (6)0.0248 (6)0.0080 (5)0.0085 (5)0.0016 (5)
C2450.0278 (7)0.0238 (6)0.0275 (6)0.0074 (5)0.0048 (5)0.0093 (5)
C2460.0243 (6)0.0260 (6)0.0220 (6)0.0065 (5)0.0001 (5)0.0084 (5)
O2440.0266 (5)0.0284 (5)0.0376 (5)0.0134 (4)0.0060 (4)0.0050 (4)
C2770.0289 (7)0.0321 (7)0.0359 (8)0.0170 (6)0.0063 (6)0.0056 (6)
C2710.0237 (7)0.0316 (7)0.0354 (7)0.0152 (6)0.0030 (6)0.0023 (6)
C2720.0345 (8)0.0405 (9)0.0372 (8)0.0120 (7)0.0065 (7)0.0042 (7)
C2730.0377 (9)0.0497 (10)0.0540 (11)0.0121 (8)0.0115 (8)0.0184 (8)
C2740.0298 (9)0.0330 (8)0.0824 (14)0.0077 (7)0.0010 (9)0.0088 (9)
C2750.0333 (9)0.0391 (9)0.0667 (12)0.0146 (7)0.0055 (8)0.0110 (8)
C2760.0305 (8)0.0418 (9)0.0429 (9)0.0168 (7)0.0018 (7)0.0048 (7)
C2510.0242 (6)0.0204 (6)0.0183 (6)0.0059 (5)0.0021 (5)0.0021 (4)
O2510.0590 (7)0.0257 (5)0.0175 (5)0.0055 (5)0.0070 (5)0.0032 (4)
O2520.0483 (6)0.0176 (4)0.0176 (4)0.0045 (4)0.0047 (4)0.0004 (3)
C2530.0440 (9)0.0230 (6)0.0195 (6)0.0061 (6)0.0040 (6)0.0035 (5)
C2540.0954 (16)0.0224 (7)0.0287 (8)0.0043 (9)0.0006 (9)0.0019 (6)
C2610.0457 (9)0.0192 (6)0.0203 (6)0.0026 (6)0.0039 (6)0.0051 (5)
Geometric parameters (Å, º) top
N11—C121.3681 (16)N21—C221.3705 (16)
N11—C161.3910 (16)N21—C261.3899 (15)
N11—H110.828 (17)N21—H210.840 (17)
C12—N131.3167 (16)C22—N231.3208 (16)
C12—S1211.6859 (13)C22—S2211.6849 (12)
N13—C141.4757 (15)N23—C241.4741 (15)
N13—H130.863 (17)N23—H230.856 (17)
C14—C151.5124 (16)C24—C251.5144 (16)
C14—C1411.5193 (17)C24—C2411.5184 (17)
C14—H141.0000C24—H241.0000
C15—C161.3507 (17)C25—C261.3507 (17)
C15—C1511.4607 (17)C25—C2511.4634 (16)
C16—C1611.4978 (17)C26—C2611.4986 (17)
C141—C1421.3849 (18)C241—C2421.3863 (17)
C141—C1461.3938 (17)C241—C2461.3937 (17)
C142—C1431.3880 (19)C242—C2431.3890 (18)
C142—H1420.9500C242—H2420.9500
C143—C1441.3852 (19)C243—C2441.3867 (18)
C143—H1430.9500C243—H2430.9500
C144—O1441.3666 (16)C244—O2441.3670 (15)
C144—C1451.390 (2)C244—C2451.3894 (19)
C145—C1461.3834 (19)C245—C2461.3820 (19)
C145—H1450.9500C245—H2450.9500
C146—H1460.9500C246—H2460.9500
O144—C1771.4362 (19)O244—C2771.4355 (18)
C177—C1711.503 (2)C277—C2711.499 (2)
C177—H17A0.9900C277—H27A0.9900
C177—H17B0.9900C277—H27B0.9900
C171—C1721.388 (2)C271—C2721.387 (2)
C171—C1761.388 (2)C271—C2761.390 (2)
C172—C1731.384 (2)C272—C2731.392 (2)
C172—H1720.9500C272—H2720.9500
C173—C1741.374 (3)C273—C2741.380 (3)
C173—H1730.9500C273—H2730.9500
C174—C1751.370 (3)C274—C2751.373 (3)
C174—H1740.9500C274—H2740.9500
C175—C1761.381 (3)C275—C2761.382 (2)
C175—H1750.9500C275—H2750.9500
C176—H1760.9500C276—H2760.9500
C151—O1511.2121 (15)C251—O2511.2134 (15)
C151—O1521.3342 (16)C251—O2521.3340 (15)
O152—C1531.4558 (16)O252—C2531.4526 (15)
C153—C1541.477 (2)C253—C2541.493 (2)
C153—H13A0.9900C253—H23A0.9900
C153—H13B0.9900C253—H23B0.9900
C154—H14A0.9800C254—H24A0.9800
C154—H14B0.9800C254—H24B0.9800
C154—H14C0.9800C254—H24C0.9800
C161—H16A0.9800C261—H26A0.9800
C161—H16B0.9800C261—H26B0.9800
C161—H16C0.9800C261—H26C0.9800
C12—N11—C16123.20 (11)C22—N21—C26123.52 (11)
C12—N11—H11117.7 (12)C22—N21—H21117.2 (11)
C16—N11—H11117.2 (11)C26—N21—H21117.6 (11)
N13—C12—N11115.96 (11)N23—C22—N21115.84 (11)
N13—C12—S121124.37 (10)N23—C22—S221124.15 (10)
N11—C12—S121119.64 (9)N21—C22—S221120.00 (9)
C12—N13—C14124.61 (11)C22—N23—C24124.53 (11)
C12—N13—H13118.4 (10)C22—N23—H23117.9 (11)
C14—N13—H13116.6 (10)C24—N23—H23116.5 (11)
N13—C14—C15108.45 (10)N23—C24—C25108.55 (9)
N13—C14—C141110.70 (10)N23—C24—C241109.96 (9)
C15—C14—C141113.20 (10)C25—C24—C241113.44 (10)
N13—C14—H14108.1N23—C24—H24108.3
C15—C14—H14108.1C25—C24—H24108.3
C141—C14—H14108.1C241—C24—H24108.3
C16—C15—C151125.99 (11)C26—C25—C251126.04 (11)
C16—C15—C14119.56 (11)C26—C25—C24119.65 (11)
C151—C15—C14114.45 (10)C251—C25—C24114.28 (10)
C15—C16—N11118.49 (11)C25—C26—N21118.57 (11)
C15—C16—C161128.68 (12)C25—C26—C261128.47 (11)
N11—C16—C161112.82 (11)N21—C26—C261112.94 (11)
C142—C141—C146117.73 (12)C242—C241—C246118.11 (12)
C142—C141—C14121.86 (11)C242—C241—C24121.55 (11)
C146—C141—C14120.38 (11)C246—C241—C24120.20 (11)
C141—C142—C143121.90 (12)C241—C242—C243121.58 (12)
C141—C142—H142119.1C241—C242—H242119.2
C143—C142—H142119.1C243—C242—H242119.2
C144—C143—C142119.64 (13)C244—C243—C242119.51 (12)
C144—C143—H143120.2C244—C243—H243120.2
C142—C143—H143120.2C242—C243—H243120.2
O144—C144—C143124.95 (13)O244—C244—C243124.95 (12)
O144—C144—C145115.74 (12)O244—C244—C245115.44 (11)
C143—C144—C145119.31 (13)C243—C244—C245119.60 (12)
C146—C145—C144120.36 (12)C246—C245—C244120.25 (12)
C146—C145—H145119.8C246—C245—H245119.9
C144—C145—H145119.8C244—C245—H245119.9
C145—C146—C141121.05 (13)C245—C246—C241120.93 (12)
C145—C146—H146119.5C245—C246—H246119.5
C141—C146—H146119.5C241—C246—H246119.5
C144—O144—C177118.67 (11)C244—O244—C277118.17 (11)
O144—C177—C171112.86 (12)O244—C277—C271113.46 (11)
O144—C177—H17A109.0O244—C277—H27A108.9
C171—C177—H17A109.0C271—C277—H27A108.9
O144—C177—H17B109.0O244—C277—H27B108.9
C171—C177—H17B109.0C271—C277—H27B108.9
H17A—C177—H17B107.8H27A—C277—H27B107.7
C172—C171—C176117.95 (15)C272—C271—C276119.03 (15)
C172—C171—C177119.63 (14)C272—C271—C277120.86 (14)
C176—C171—C177122.39 (14)C276—C271—C277120.07 (14)
C173—C172—C171120.86 (15)C271—C272—C273120.00 (17)
C173—C172—H172119.6C271—C272—H272120.0
C171—C172—H172119.6C273—C272—H272120.0
C174—C173—C172120.19 (16)C274—C273—C272120.01 (17)
C174—C173—H173119.9C274—C273—H273120.0
C172—C173—H173119.9C272—C273—H273120.0
C175—C174—C173119.70 (16)C275—C274—C273120.39 (17)
C175—C174—H174120.1C275—C274—H274119.8
C173—C174—H174120.1C273—C274—H274119.8
C174—C175—C176120.35 (16)C274—C275—C276119.78 (17)
C174—C175—H175119.8C274—C275—H275120.1
C176—C175—H175119.8C276—C275—H275120.1
C175—C176—C171120.94 (16)C275—C276—C271120.77 (16)
C175—C176—H176119.5C275—C276—H276119.6
C171—C176—H176119.5C271—C276—H276119.6
O151—C151—O152121.90 (12)O251—C251—O252121.98 (11)
O151—C151—C15123.31 (12)O251—C251—C25122.90 (12)
O152—C151—C15114.78 (11)O252—C251—C25115.12 (10)
C151—O152—C153117.11 (11)C251—O252—C253117.29 (10)
O152—C153—C154107.07 (12)O252—C253—C254106.93 (11)
O152—C153—H13A110.3O252—C253—H23A110.3
C154—C153—H13A110.3C254—C253—H23A110.3
O152—C153—H13B110.3O252—C253—H23B110.3
C154—C153—H13B110.3C254—C253—H23B110.3
H13A—C153—H13B108.6H23A—C253—H23B108.6
C153—C154—H14A109.5C253—C254—H24A109.5
C153—C154—H14B109.5C253—C254—H24B109.5
H14A—C154—H14B109.5H24A—C254—H24B109.5
C153—C154—H14C109.5C253—C254—H24C109.5
H14A—C154—H14C109.5H24A—C254—H24C109.5
H14B—C154—H14C109.5H24B—C254—H24C109.5
C16—C161—H16A109.5C26—C261—H26A109.5
C16—C161—H16B109.5C26—C261—H26B109.5
H16A—C161—H16B109.5H26A—C261—H26B109.5
C16—C161—H16C109.5C26—C261—H26C109.5
H16A—C161—H16C109.5H26A—C261—H26C109.5
H16B—C161—H16C109.5H26B—C261—H26C109.5
C16—N11—C12—N1315.90 (19)C26—N21—C22—N2313.56 (18)
C16—N11—C12—S121162.13 (10)C26—N21—C22—S221165.00 (10)
N11—C12—N13—C1411.75 (18)N21—C22—N23—C2413.70 (17)
S121—C12—N13—C14170.32 (9)S221—C22—N23—C24167.80 (9)
C12—N13—C14—C1531.89 (16)C22—N23—C24—C2532.41 (16)
C12—N13—C14—C14192.86 (14)C22—N23—C24—C24192.22 (13)
N13—C14—C15—C1627.72 (16)N23—C24—C25—C2627.10 (16)
C141—C14—C15—C1695.54 (14)C241—C24—C25—C2695.45 (14)
N13—C14—C15—C151152.93 (11)N23—C24—C25—C251151.24 (11)
C141—C14—C15—C15183.82 (13)C241—C24—C25—C25186.22 (13)
C151—C15—C16—N11174.77 (12)C251—C25—C26—N21172.47 (12)
C14—C15—C16—N115.95 (19)C24—C25—C26—N215.65 (18)
C151—C15—C16—C1614.8 (2)C251—C25—C26—C2616.0 (2)
C14—C15—C16—C161174.49 (14)C24—C25—C26—C261175.90 (13)
C12—N11—C16—C1518.5 (2)C22—N21—C26—C2517.22 (19)
C12—N11—C16—C161161.15 (13)C22—N21—C26—C261161.46 (12)
N13—C14—C141—C14293.55 (14)N23—C24—C241—C24284.06 (14)
C15—C14—C141—C14228.47 (16)C25—C24—C241—C24237.70 (15)
N13—C14—C141—C14684.68 (14)N23—C24—C241—C24691.67 (13)
C15—C14—C141—C146153.31 (11)C25—C24—C241—C246146.56 (11)
C146—C141—C142—C1430.7 (2)C246—C241—C242—C2430.39 (19)
C14—C141—C142—C143178.98 (12)C24—C241—C242—C243176.21 (11)
C141—C142—C143—C1440.7 (2)C241—C242—C243—C2440.4 (2)
C142—C143—C144—O144179.12 (13)C242—C243—C244—O244177.66 (12)
C142—C143—C144—C1450.4 (2)C242—C243—C244—C2451.3 (2)
O144—C144—C145—C146178.12 (12)O244—C244—C245—C246177.69 (12)
C143—C144—C145—C1461.4 (2)C243—C244—C245—C2461.3 (2)
C144—C145—C146—C1411.4 (2)C244—C245—C246—C2410.5 (2)
C142—C141—C146—C1450.35 (19)C242—C241—C246—C2450.33 (19)
C14—C141—C146—C145177.95 (12)C24—C241—C246—C245176.21 (12)
C143—C144—O144—C1774.2 (2)C243—C244—O244—C2771.89 (19)
C145—C144—O144—C177175.36 (12)C245—C244—O244—C277179.15 (11)
C144—O144—C177—C17175.78 (16)C244—O244—C277—C27171.53 (15)
O144—C177—C171—C17259.75 (18)O244—C277—C271—C27253.53 (18)
O144—C177—C171—C176122.39 (16)O244—C277—C271—C276128.72 (14)
C176—C171—C172—C1730.7 (2)C276—C271—C272—C2731.7 (2)
C177—C171—C172—C173178.68 (14)C277—C271—C272—C273179.50 (14)
C171—C172—C173—C1740.2 (3)C271—C272—C273—C2740.6 (3)
C172—C173—C174—C1750.8 (3)C272—C273—C274—C2750.9 (3)
C173—C174—C175—C1760.5 (3)C273—C274—C275—C2761.1 (3)
C174—C175—C176—C1710.5 (3)C274—C275—C276—C2710.1 (2)
C172—C171—C176—C1751.1 (2)C272—C271—C276—C2751.5 (2)
C177—C171—C176—C175178.98 (15)C277—C271—C276—C275179.28 (14)
C16—C15—C151—O151177.35 (14)C26—C25—C251—O251176.89 (14)
C14—C15—C151—O1513.35 (19)C24—C25—C251—O2511.32 (19)
C16—C15—C151—O1521.6 (2)C26—C25—C251—O2522.5 (2)
C14—C15—C151—O152177.67 (12)C24—C25—C251—O252179.32 (11)
O151—C151—O152—C1532.9 (2)O251—C251—O252—C2531.9 (2)
C15—C151—O152—C153176.06 (13)C25—C251—O252—C253177.45 (12)
C151—O152—C153—C154177.87 (17)C251—O252—C253—C254179.34 (15)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N11—H11···O2510.828 (17)2.173 (17)2.9786 (14)164.4 (17)
N13—H13···S121i0.863 (17)2.479 (17)3.3254 (11)167.2 (15)
N21—H21···O151ii0.839 (17)2.159 (17)2.9818 (14)166.4 (16)
N23—H23···S221iii0.856 (17)2.531 (17)3.3682 (11)166.2 (15)
Symmetry codes: (i) x, y+2, z+1; (ii) x, y, z1; (iii) x, y+2, z.
(II) Ethyl (4RS)-4-(4-methoxyphenyl)-6-methyl-2-sulfanylidene-1,2,3,4-tetrahydropyrimidine-5-carboxylate 0.105-hydrate top
Crystal data top
C15H18N2O3S·0.105H2OF(000) = 1304.4
Mr = 308.26Dx = 1.259 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 18.1455 (6) ÅCell parameters from 4024 reflections
b = 7.3171 (2) Åθ = 1.7–28.3°
c = 25.0493 (8) ŵ = 0.21 mm1
β = 102.008 (1)°T = 200 K
V = 3253.08 (17) Å3Plate, colourless
Z = 80.52 × 0.48 × 0.19 mm
Data collection top
Bruker APEXII CCD
diffractometer
3447 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.015
ϕ and ω scansθmax = 28.3°, θmin = 3.0°
Absorption correction: multi-scan
(SADABS; Sheldrick, 2003)
h = 1624
Tmin = 0.906, Tmax = 0.961k = 99
14922 measured reflectionsl = 3333
4023 independent reflections
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.101 w = 1/[σ2(Fo2) + (0.0493P)2 + 2.7236P]
where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4023 reflectionsΔρmax = 0.35 e Å3
202 parametersΔρmin = 0.23 e Å3
Crystal data top
C15H18N2O3S·0.105H2OV = 3253.08 (17) Å3
Mr = 308.26Z = 8
Monoclinic, C2/cMo Kα radiation
a = 18.1455 (6) ŵ = 0.21 mm1
b = 7.3171 (2) ÅT = 200 K
c = 25.0493 (8) Å0.52 × 0.48 × 0.19 mm
β = 102.008 (1)°
Data collection top
Bruker APEXII CCD
diffractometer
4023 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 2003)
3447 reflections with I > 2σ(I)
Tmin = 0.906, Tmax = 0.961Rint = 0.015
14922 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0360 restraints
wR(F2) = 0.101H atoms treated by a mixture of independent and constrained refinement
S = 1.04Δρmax = 0.35 e Å3
4023 reflectionsΔρmin = 0.23 e Å3
202 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
N10.58395 (6)0.14175 (15)0.05939 (4)0.0243 (2)
H10.5704 (9)0.033 (2)0.0609 (7)0.029*
C20.64611 (7)0.17583 (17)0.03842 (5)0.0227 (2)
S210.69387 (2)0.00082 (4)0.01780 (2)0.03111 (11)
N30.66379 (6)0.35016 (14)0.03425 (4)0.0247 (2)
H30.7022 (9)0.371 (2)0.0209 (6)0.030*
C40.63694 (7)0.49796 (16)0.06557 (5)0.0223 (2)
H40.63560.61440.04450.027*
C50.55778 (7)0.45320 (16)0.07152 (5)0.0225 (2)
C60.53519 (7)0.27681 (16)0.07031 (5)0.0228 (2)
C410.69191 (7)0.52154 (16)0.12017 (5)0.0224 (2)
C420.68044 (8)0.44080 (18)0.16797 (5)0.0269 (3)
H420.63480.37660.16760.032*
C430.73407 (8)0.45151 (19)0.21645 (5)0.0302 (3)
H430.72480.39680.24880.036*
C440.80118 (8)0.54267 (18)0.21714 (5)0.0284 (3)
C450.81305 (8)0.62852 (19)0.16998 (6)0.0299 (3)
H450.85840.69430.17060.036*
C460.75898 (7)0.61814 (17)0.12227 (5)0.0272 (3)
H460.76750.67760.09040.033*
O4410.85890 (6)0.55694 (15)0.26190 (4)0.0383 (2)
C4410.85197 (12)0.4539 (3)0.30910 (7)0.0516 (5)
H44A0.84140.32580.29880.077*
H44B0.81060.50350.32440.077*
H44C0.89910.46160.33640.077*
C510.51321 (7)0.61165 (17)0.08256 (5)0.0250 (3)
O510.52961 (6)0.76801 (13)0.07394 (5)0.0373 (2)
O520.45486 (6)0.56864 (13)0.10456 (5)0.0370 (2)
C530.40870 (9)0.71759 (19)0.11794 (7)0.0368 (3)
H53A0.38330.78190.08440.044*
H53B0.44020.80660.14240.044*
C540.35186 (11)0.6335 (2)0.14581 (9)0.0540 (5)
H54A0.31730.72810.15350.081*
H54B0.37760.57720.18010.081*
H54C0.32340.54000.12210.081*
C610.46201 (8)0.20188 (19)0.07949 (7)0.0352 (3)
H61A0.42080.28310.06260.053*
H61B0.46370.19340.11880.053*
H61C0.45370.08010.06310.053*
O711.00000.737 (3)0.25000.158 (11)*0.210 (11)
H71A0.95500.68220.25400.238*0.105 (5)
H71B1.04500.68220.24600.238*0.105 (5)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0278 (5)0.0146 (5)0.0332 (5)0.0028 (4)0.0128 (4)0.0008 (4)
C20.0258 (6)0.0206 (6)0.0226 (5)0.0019 (5)0.0072 (4)0.0011 (4)
S210.03462 (19)0.02042 (16)0.0433 (2)0.00156 (12)0.01972 (15)0.00386 (13)
N30.0294 (6)0.0197 (5)0.0294 (5)0.0050 (4)0.0159 (4)0.0029 (4)
C40.0268 (6)0.0149 (5)0.0273 (6)0.0029 (4)0.0104 (5)0.0005 (4)
C50.0243 (6)0.0176 (5)0.0267 (6)0.0017 (4)0.0075 (5)0.0006 (4)
C60.0231 (6)0.0191 (5)0.0269 (6)0.0011 (5)0.0069 (5)0.0008 (4)
C410.0258 (6)0.0151 (5)0.0279 (6)0.0012 (4)0.0092 (5)0.0018 (4)
C420.0293 (6)0.0221 (6)0.0312 (6)0.0048 (5)0.0110 (5)0.0004 (5)
C430.0385 (7)0.0249 (6)0.0286 (6)0.0026 (5)0.0102 (5)0.0032 (5)
C440.0318 (7)0.0217 (6)0.0311 (6)0.0013 (5)0.0048 (5)0.0036 (5)
C450.0279 (6)0.0261 (6)0.0367 (7)0.0064 (5)0.0092 (5)0.0026 (5)
C460.0305 (6)0.0228 (6)0.0307 (6)0.0051 (5)0.0120 (5)0.0003 (5)
O4410.0399 (6)0.0367 (5)0.0341 (5)0.0038 (5)0.0020 (4)0.0007 (4)
C4410.0671 (12)0.0435 (9)0.0359 (8)0.0066 (9)0.0084 (8)0.0059 (7)
C510.0260 (6)0.0192 (6)0.0304 (6)0.0008 (5)0.0069 (5)0.0000 (5)
O510.0404 (6)0.0166 (4)0.0603 (7)0.0019 (4)0.0226 (5)0.0007 (4)
O520.0373 (5)0.0189 (4)0.0628 (7)0.0028 (4)0.0283 (5)0.0022 (4)
C530.0372 (8)0.0220 (6)0.0559 (9)0.0057 (6)0.0205 (7)0.0009 (6)
C540.0538 (10)0.0326 (8)0.0868 (13)0.0011 (7)0.0407 (10)0.0058 (9)
C610.0277 (7)0.0221 (6)0.0593 (9)0.0048 (5)0.0173 (6)0.0030 (6)
Geometric parameters (Å, º) top
N1—C21.3627 (16)C45—C461.3818 (19)
N1—C61.3910 (16)C45—H450.9500
N1—H10.836 (17)C46—H460.9500
C2—N31.3248 (16)O441—C4411.430 (2)
C2—S211.6864 (13)C441—H44A0.9800
N3—C41.4771 (15)C441—H44B0.9800
N3—H30.848 (16)C441—H44C0.9800
C4—C51.5106 (17)C51—O511.2128 (15)
C4—C411.5256 (17)C51—O521.3291 (16)
C4—H41.0000O52—C531.4555 (16)
C5—C61.3525 (16)C53—C541.493 (2)
C5—C511.4724 (17)C53—H53A0.9900
C6—C611.4980 (17)C53—H53B0.9900
C41—C421.3892 (17)C54—H54A0.9800
C41—C461.3989 (17)C54—H54B0.9800
C42—C431.3915 (19)C54—H54C0.9800
C42—H420.9500C61—H61A0.9800
C43—C441.385 (2)C61—H61B0.9800
C43—H430.9500C61—H61C0.9800
C44—O4411.3699 (16)O71—H71A0.9351
C44—C451.3936 (19)O71—H71B0.9351
C2—N1—C6123.86 (11)C44—C45—H45120.0
C2—N1—H1117.9 (12)C45—C46—C41121.06 (12)
C6—N1—H1117.5 (12)C45—C46—H46119.5
N3—C2—N1116.10 (11)C41—C46—H46119.5
N3—C2—S21123.97 (9)C44—O441—C441116.92 (12)
N1—C2—S21119.90 (9)O441—C441—H44A109.5
C2—N3—C4123.44 (10)O441—C441—H44B109.5
C2—N3—H3116.1 (12)H44A—C441—H44B109.5
C4—N3—H3117.7 (11)O441—C441—H44C109.5
N3—C4—C5108.62 (9)H44A—C441—H44C109.5
N3—C4—C41109.42 (10)H44B—C441—H44C109.5
C5—C4—C41113.20 (10)O51—C51—O52122.92 (12)
N3—C4—H4108.5O51—C51—C5123.00 (12)
C5—C4—H4108.5O52—C51—C5114.04 (11)
C41—C4—H4108.5C51—O52—C53117.67 (11)
C6—C5—C51125.45 (11)O52—C53—C54106.60 (12)
C6—C5—C4119.64 (11)O52—C53—H53A110.4
C51—C5—C4114.74 (10)C54—C53—H53A110.4
C5—C6—N1118.70 (11)O52—C53—H53B110.4
C5—C6—C61128.31 (12)C54—C53—H53B110.4
N1—C6—C61112.99 (11)H53A—C53—H53B108.6
C42—C41—C46117.88 (12)C53—C54—H54A109.5
C42—C41—C4122.50 (11)C53—C54—H54B109.5
C46—C41—C4119.49 (11)H54A—C54—H54B109.5
C41—C42—C43121.69 (12)C53—C54—H54C109.5
C41—C42—H42119.2H54A—C54—H54C109.5
C43—C42—H42119.2H54B—C54—H54C109.5
C44—C43—C42119.43 (12)C6—C61—H61A109.5
C44—C43—H43120.3C6—C61—H61B109.5
C42—C43—H43120.3H61A—C61—H61B109.5
O441—C44—C43124.56 (13)C6—C61—H61C109.5
O441—C44—C45115.64 (12)H61A—C61—H61C109.5
C43—C44—C45119.80 (13)H61B—C61—H61C109.5
C46—C45—C44120.08 (12)H71A—O71—H71B128.7
C46—C45—H45120.0
C6—N1—C2—N37.45 (18)C46—C41—C42—C431.22 (19)
C6—N1—C2—S21170.69 (9)C4—C41—C42—C43174.71 (12)
N1—C2—N3—C419.96 (18)C41—C42—C43—C440.9 (2)
S21—C2—N3—C4161.98 (9)C42—C43—C44—O441177.83 (13)
C2—N3—C4—C535.56 (16)C42—C43—C44—C452.5 (2)
C2—N3—C4—C4188.46 (14)O441—C44—C45—C46178.37 (12)
N3—C4—C5—C626.59 (15)C43—C44—C45—C461.9 (2)
C41—C4—C5—C695.15 (13)C44—C45—C46—C410.3 (2)
N3—C4—C5—C51157.92 (10)C42—C41—C46—C451.81 (19)
C41—C4—C5—C5180.34 (13)C4—C41—C46—C45174.24 (12)
C51—C5—C6—N1179.85 (11)C43—C44—O441—C4417.0 (2)
C4—C5—C6—N14.87 (18)C45—C44—O441—C441173.34 (14)
C51—C5—C6—C610.1 (2)C6—C5—C51—O51166.64 (14)
C4—C5—C6—C61175.04 (13)C4—C5—C51—O5118.17 (18)
C2—N1—C6—C514.65 (18)C6—C5—C51—O5215.55 (19)
C2—N1—C6—C61165.42 (12)C4—C5—C51—O52159.64 (11)
N3—C4—C41—C4296.71 (13)O51—C51—O52—C530.9 (2)
C5—C4—C41—C4224.58 (16)C5—C51—O52—C53178.66 (12)
N3—C4—C41—C4679.16 (13)C51—O52—C53—C54175.52 (14)
C5—C4—C41—C46159.55 (11)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O51i0.836 (15)2.125 (15)2.9552 (15)172.2 (16)
N3—H3···S21ii0.847 (16)2.477 (16)3.3108 (12)168.1 (13)
O71—H71A···O4410.942.022.949 (10)178
Symmetry codes: (i) x, y1, z; (ii) x+3/2, y+1/2, z.

Experimental details

(I)(II)
Crystal data
Chemical formulaC21H22N2O3SC15H18N2O3S·0.105H2O
Mr382.47308.26
Crystal system, space groupTriclinic, P1Monoclinic, C2/c
Temperature (K)200200
a, b, c (Å)11.0094 (4), 12.7915 (5), 14.5418 (5)18.1455 (6), 7.3171 (2), 25.0493 (8)
α, β, γ (°)85.567 (2), 83.815 (2), 69.150 (2)90, 102.008 (1), 90
V3)1900.96 (12)3253.08 (17)
Z48
Radiation typeMo KαMo Kα
µ (mm1)0.190.21
Crystal size (mm)0.46 × 0.45 × 0.350.52 × 0.48 × 0.19
Data collection
DiffractometerBruker APEXII CCD
diffractometer
Bruker APEXII CCD
diffractometer
Absorption correctionMulti-scan
(SADABS; Sheldrick, 2003)
Multi-scan
(SADABS; Sheldrick, 2003)
Tmin, Tmax0.833, 0.9350.906, 0.961
No. of measured, independent and
observed [I > 2σ(I)] reflections
33717, 9456, 7596 14922, 4023, 3447
Rint0.0200.015
(sin θ/λ)max1)0.6690.667
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.040, 0.118, 1.04 0.036, 0.101, 1.04
No. of reflections94564023
No. of parameters503202
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.55, 0.320.35, 0.23

Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), PLATON (Spek, 2009) and SHELXL2014 (Sheldrick, 2015).

Selected geometrical parameters (Å, °) top
Ring-puckering parameters
Parameter(I), molecule 1(I), molecule 2(II)
Q0.3166 (13)0.3078 (13)0.3050 (13)
θ75.9 (2)74.2 (2)69.4 (2)
ϕ176.0 (2)173.6 (3)165.7 (3)
Torsion angles
Parameter(I) (x = 1)(I) (x = 2)(II) (x = nil)
Nx3—Cx4—Cx41—Cx42-93.55 (14)-84.06 (14)-96.71 (13)
Cx4—Cx5—Cx51—Ox513.35 (19)1.32 (19)18.17 (18)
Cx4—Cx5—Cx51—Ox52-177.69 (12)-179.32 (11)-159.64 (11)
Cx5—Cx51—Ox52—xC53-176.06 (13)-177.45 (12)178.66 (12)
Cx51—Ox52—Cx53—Cx54177.87 (17)-179.34 (15)-175.52 (14)
Cx43—Cx44—Ox44—Cx77-4.2 (2)1.89 (19)
Cx44—Cx44—Cx77—Cx71-75.78 (16)-71.53 (15)
Ox44—Cx77—Cx71—Cx72-59.75 (18)-53.53 (18)
Cx43—Cx44—Ox441—Cx4417.0 (2)
Bond angles
Parameter(I) (x = 1)(I) (x = 2)(II) (x = nil)
Cx43—Cx44—Ox44124.95 (13)124.95 (12)
Cx45—Cx44—Ox44115.74 (12)115.44 (11)
Cx43—Cx44—Ox441124.56 (13)
Cx45—Cx44—Ox441115.64 (12)
Ring-puckering parameters calculated for the atom sequence Nx1—Cx2—Nx3—Cx4—Cx5—Cx6, where x = 1 or 2 for (I), and x = nil for (II)
Hydrogen bond parameters (Å, °) top
CompoundD—H···AD—HH···AD···AD—H···A
(I)N11—H11···O2510.828 (17)2.173 (17)2.9786 (14)164.4 (17)
N13—H13···S121i0.863 (17)2.479 (17)3.3254 (11)167.2 (15)
N21—H21···O151ii0.839 (17)2.159 (17)2.9818 (14)166.4 (16)
N23—H23···S221iii0.856 (17)2.531 (17)3.3682 (11)166.2 (15)
(II)N1—H1···O51iv0.836 (15)2.125 (15)2.9552 (15)172.2 (16)
N3—H3···S21v0.847 (16)2.477 (16)3.3108 (12)168.1 (13)
O71—H71···O4410.9352.022.949 (1)178
Symmetry codes: (i) -x, -y+2, -z+1; (ii) x, y, z-1; (iii) -x, -y+2, -z; (iv) x, y-1, z, (v) -x+3/2, -y+1/2, -z.
 

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