In order to better understand the interaction between the pharmaceutically active compound 5-fluorocytosine [4-amino-5-fluoropyrimidin-2(1
H)-one] and its receptor, hydrogen-bonded complexes with structurally similar bonding patterns have been investigated. During the cocrystallization screening, three new pseudopolymorphs of 5-fluorocytosine were obtained, namely 5-fluorocytosine dimethyl sulfoxide solvate, C
4H
4FN
3O·C
2H
6OS, (I), 5-fluorocytosine dimethylacetamide hemisolvate, C
4H
4FN
3O·0.5C
4H
9NO, (II), and 5-fluorocytosine hemihydrate, C
4H
4FN
3O·0.5H
2O, (III). Similar hydrogen-bond patterns are observed in all three crystal structures. The 5-fluorocytosine molecules form ribbons with repeated
R22(8) dimer interactions. These dimers are stabilized by N-H
N and N-H
O hydrogen bonds. The solvent molecules adopt similar positions with respect to 5-fluorocytosine. Depending on the hydrogen bonds formed by the solvent, the 5-fluorocytosine ribbons form layers or tubes. A database study was carried out to compare the hydrogen-bond pattern of compounds (I)-(III) with those of other (pseudo)polymorphs of 5-fluorocytosine.
Supporting information
CCDC references: 760132; 760133; 760134
Single crystals of (I)–(III) were obtained by co-crystallization of
commercially available 5-fluorocytosine with various compounds. The
crystallization method used was solvent evaporation at 323 K for (I) and (II),
and at room temperature for (III). Compound (I) was obtained by
crystallization of 5-fluorocytosine with carbamylurea from dimethyl sulfoxide.
5-Fluorocytosine and N,N'-(pyridine-2,6-diyl)diacetamide
dissolved in dimethylacetamide yielded (II). Crystals of (III) were obtained
by crystallization of 5-fluorocytosine and 2-aminopyridine in
dimethylacetamide. [Please give mole ratios or quantities of
reagents]
In (I) and (II), all H atoms were initially located by difference Fourier
synthesis. Subsequently, H atoms bonded to C atoms were refined using a riding
model, with methyl C—H = 0.98 Å and aromatic C—H = 0.95 Å, and with
Uiso(H) = 1.5Ueq(Cmethyl) or 1.2Ueq(C). H atoms
bonded to N atoms were refined isotropically. In (III), all H atoms of the
5-fluorocytosine molecules were refined using a riding model, with aromatic
C—H = 0.95 Å, and amide and terminal N—H = 0.88 Å, with
Uiso(H) = 1.2Ueq(C,N). For the water molecules, the
following restraints were applied: O—H = 0.88 (2) and H···H = 1.44 (4) Å.
In (II), all solvent atoms except O are disordered over two positions, with a
site occupation factor of 0.66 (2) for the major occupied orientation. However,
the positions of the methyl C atoms coincide.
In spite of the E-value distribution, which suggests a centrosymmetric
space group (mean value of E2 - 1 = 0.958), the structure solution
of (III) in the centrosymmetric space group C2/c failed. 2113 Friedel
pairs were merged prior to refinement, due to the absence of anomalous
scatterers. The absolute structure was arbitrarily assigned.
For all compounds, data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA (Stoe & Cie, 2001); data reduction: X-AREA (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Version 2.2; Macrae et al., 2008) and XP (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2009).
(I) 4-amino-5-fluoropyrimidin-2(1
H)-one dimethyl sulfoxide solvate
top
Crystal data top
C4H4FN3O·C2H6OS | F(000) = 432 |
Mr = 207.23 | Dx = 1.471 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 6720 reflections |
a = 12.4467 (12) Å | θ = 4.0–26.6° |
b = 9.1849 (8) Å | µ = 0.33 mm−1 |
c = 8.5635 (8) Å | T = 173 K |
β = 107.065 (8)° | Plate, colourless |
V = 935.89 (15) Å3 | 0.31 × 0.14 × 0.05 mm |
Z = 4 | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1904 independent reflections |
Radiation source: fine-focus sealed tube | 1509 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.049 |
ω scans | θmax = 26.4°, θmin = 4.1° |
Absorption correction: multi-scan [MULABS (Spek, 2009; Blessing, 1995)] | h = −15→15 |
Tmin = 0.903, Tmax = 0.984 | k = −11→9 |
8061 measured reflections | l = −10→10 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0576P)2 + 0.0842P] where P = (Fo2 + 2Fc2)/3 |
1904 reflections | (Δ/σ)max < 0.001 |
132 parameters | Δρmax = 0.26 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
Crystal data top
C4H4FN3O·C2H6OS | V = 935.89 (15) Å3 |
Mr = 207.23 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.4467 (12) Å | µ = 0.33 mm−1 |
b = 9.1849 (8) Å | T = 173 K |
c = 8.5635 (8) Å | 0.31 × 0.14 × 0.05 mm |
β = 107.065 (8)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1904 independent reflections |
Absorption correction: multi-scan [MULABS (Spek, 2009; Blessing, 1995)] | 1509 reflections with I > 2σ(I) |
Tmin = 0.903, Tmax = 0.984 | Rint = 0.049 |
8061 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.26 e Å−3 |
1904 reflections | Δρmin = −0.27 e Å−3 |
132 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.54297 (14) | 0.11389 (16) | 0.33369 (18) | 0.0300 (4) | |
H1 | 0.514 (2) | 0.035 (3) | 0.278 (3) | 0.041 (6)* | |
C2 | 0.49989 (16) | 0.24607 (18) | 0.2677 (2) | 0.0278 (4) | |
O21 | 0.41905 (12) | 0.25078 (14) | 0.14085 (16) | 0.0357 (3) | |
N3 | 0.54901 (13) | 0.37009 (16) | 0.34453 (17) | 0.0274 (3) | |
C4 | 0.63599 (15) | 0.36507 (19) | 0.48044 (19) | 0.0253 (4) | |
N41 | 0.68134 (15) | 0.48979 (18) | 0.54895 (19) | 0.0322 (4) | |
H411 | 0.739 (2) | 0.489 (3) | 0.626 (3) | 0.038 (6)* | |
H412 | 0.652 (2) | 0.574 (3) | 0.497 (3) | 0.043 (6)* | |
C5 | 0.67761 (15) | 0.22642 (19) | 0.5482 (2) | 0.0280 (4) | |
F51 | 0.76422 (10) | 0.22291 (12) | 0.68946 (13) | 0.0388 (3) | |
C6 | 0.63106 (16) | 0.1036 (2) | 0.4720 (2) | 0.0305 (4) | |
H6 | 0.6593 | 0.0111 | 0.5142 | 0.037* | |
S1M | 0.89390 (5) | 0.67960 (6) | 0.90065 (6) | 0.04211 (18) | |
O1M | 0.90100 (14) | 0.57959 (18) | 0.76343 (18) | 0.0499 (4) | |
C1M | 1.0318 (2) | 0.7510 (3) | 0.9899 (3) | 0.0589 (7) | |
H1M1 | 1.0832 | 0.6714 | 1.0384 | 0.088* | |
H1M2 | 1.0301 | 0.8217 | 1.0749 | 0.088* | |
H1M3 | 1.0578 | 0.7991 | 0.9055 | 0.088* | |
C2M | 0.8305 (2) | 0.8437 (3) | 0.8087 (3) | 0.0583 (6) | |
H2M1 | 0.8726 | 0.8822 | 0.7373 | 0.087* | |
H2M2 | 0.8311 | 0.9152 | 0.8939 | 0.087* | |
H2M3 | 0.7527 | 0.8243 | 0.7440 | 0.087* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0353 (9) | 0.0167 (7) | 0.0314 (7) | −0.0004 (6) | −0.0007 (6) | −0.0012 (6) |
C2 | 0.0305 (9) | 0.0202 (8) | 0.0290 (8) | 0.0006 (7) | 0.0030 (7) | 0.0001 (6) |
O21 | 0.0360 (8) | 0.0226 (6) | 0.0370 (7) | −0.0002 (6) | −0.0072 (6) | 0.0004 (5) |
N3 | 0.0299 (8) | 0.0182 (7) | 0.0299 (7) | −0.0003 (6) | 0.0021 (6) | −0.0001 (5) |
C4 | 0.0266 (9) | 0.0243 (8) | 0.0246 (8) | −0.0007 (7) | 0.0068 (6) | −0.0005 (6) |
N41 | 0.0342 (9) | 0.0242 (8) | 0.0306 (8) | −0.0031 (6) | −0.0023 (7) | −0.0023 (6) |
C5 | 0.0283 (9) | 0.0269 (9) | 0.0247 (8) | 0.0022 (7) | 0.0014 (7) | 0.0026 (6) |
F51 | 0.0383 (6) | 0.0355 (6) | 0.0309 (6) | −0.0001 (5) | −0.0078 (5) | 0.0030 (4) |
C6 | 0.0330 (10) | 0.0229 (8) | 0.0312 (9) | 0.0042 (7) | 0.0024 (7) | 0.0042 (7) |
S1M | 0.0453 (3) | 0.0455 (3) | 0.0326 (3) | −0.0113 (3) | 0.0070 (2) | −0.0037 (2) |
O1M | 0.0485 (9) | 0.0477 (9) | 0.0443 (8) | −0.0061 (7) | −0.0007 (7) | −0.0155 (7) |
C1M | 0.0482 (14) | 0.0643 (16) | 0.0507 (14) | −0.0107 (12) | −0.0064 (11) | −0.0185 (12) |
C2M | 0.0550 (15) | 0.0635 (16) | 0.0573 (14) | 0.0118 (13) | 0.0178 (12) | −0.0020 (12) |
Geometric parameters (Å, º) top
N1—C6 | 1.361 (2) | C5—F51 | 1.3640 (19) |
N1—C2 | 1.380 (2) | C6—H6 | 0.9500 |
N1—H1 | 0.88 (3) | S1M—O1M | 1.5143 (16) |
C2—O21 | 1.246 (2) | S1M—C2M | 1.775 (3) |
C2—N3 | 1.367 (2) | S1M—C1M | 1.786 (2) |
N3—C4 | 1.338 (2) | C1M—H1M1 | 0.9800 |
C4—N41 | 1.334 (2) | C1M—H1M2 | 0.9800 |
C4—C5 | 1.432 (2) | C1M—H1M3 | 0.9800 |
N41—H411 | 0.82 (3) | C2M—H2M1 | 0.9800 |
N41—H412 | 0.91 (3) | C2M—H2M2 | 0.9800 |
C5—C6 | 1.346 (3) | C2M—H2M3 | 0.9800 |
| | | |
C6—N1—C2 | 122.32 (15) | C5—C6—H6 | 120.5 |
C6—N1—H1 | 120.9 (16) | N1—C6—H6 | 120.5 |
C2—N1—H1 | 116.6 (16) | O1M—S1M—C2M | 106.88 (11) |
O21—C2—N3 | 121.56 (16) | O1M—S1M—C1M | 106.70 (12) |
O21—C2—N1 | 120.33 (16) | C2M—S1M—C1M | 97.16 (14) |
N3—C2—N1 | 118.10 (15) | S1M—C1M—H1M1 | 109.5 |
C4—N3—C2 | 121.58 (15) | S1M—C1M—H1M2 | 109.5 |
N41—C4—N3 | 118.87 (16) | H1M1—C1M—H1M2 | 109.5 |
N41—C4—C5 | 121.95 (16) | S1M—C1M—H1M3 | 109.5 |
N3—C4—C5 | 119.18 (15) | H1M1—C1M—H1M3 | 109.5 |
C4—N41—H411 | 120.1 (17) | H1M2—C1M—H1M3 | 109.5 |
C4—N41—H412 | 117.2 (15) | S1M—C2M—H2M1 | 109.5 |
H411—N41—H412 | 122 (2) | S1M—C2M—H2M2 | 109.5 |
C6—C5—F51 | 121.73 (16) | H2M1—C2M—H2M2 | 109.5 |
C6—C5—C4 | 119.71 (16) | S1M—C2M—H2M3 | 109.5 |
F51—C5—C4 | 118.57 (15) | H2M1—C2M—H2M3 | 109.5 |
C5—C6—N1 | 119.09 (16) | H2M2—C2M—H2M3 | 109.5 |
| | | |
C6—N1—C2—O21 | −179.93 (19) | N3—C4—C5—C6 | 2.0 (3) |
C6—N1—C2—N3 | 0.6 (3) | N41—C4—C5—F51 | 1.8 (3) |
O21—C2—N3—C4 | −179.82 (18) | N3—C4—C5—F51 | −178.12 (17) |
N1—C2—N3—C4 | −0.4 (3) | F51—C5—C6—N1 | 178.36 (17) |
C2—N3—C4—N41 | 179.20 (17) | C4—C5—C6—N1 | −1.7 (3) |
C2—N3—C4—C5 | −0.9 (3) | C2—N1—C6—C5 | 0.5 (3) |
N41—C4—C5—C6 | −178.12 (18) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N41—H411···O1M | 0.82 (3) | 2.18 (3) | 2.929 (2) | 152 (2) |
N41—H412···O21i | 0.91 (3) | 2.05 (3) | 2.959 (2) | 174 (2) |
N1—H1···N3ii | 0.88 (3) | 1.88 (3) | 2.762 (2) | 179 (2) |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+1, y−1/2, −z+1/2. |
(II) 5-fluorocytosine dimethylacetamide hemisolvate
top
Crystal data top
C4H4FN3O·0.5C4H9NO | Z = 4 |
Mr = 172.67 | F(000) = 360 |
Triclinic, P1 | Dx = 1.473 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.7247 (12) Å | Cell parameters from 3061 reflections |
b = 8.2840 (13) Å | θ = 3.6–25.6° |
c = 13.238 (2) Å | µ = 0.13 mm−1 |
α = 90.204 (13)° | T = 173 K |
β = 104.336 (12)° | Block, colourless |
γ = 107.774 (12)° | 0.40 × 0.25 × 0.10 mm |
V = 778.7 (2) Å3 | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1647 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.169 |
Graphite monochromator | θmax = 25.6°, θmin = 3.6° |
ω scans | h = −9→9 |
8171 measured reflections | k = −10→10 |
2911 independent reflections | l = −16→16 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.069 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.199 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.94 | w = 1/[σ2(Fo2) + (0.0992P)2] where P = (Fo2 + 2Fc2)/3 |
2911 reflections | (Δ/σ)max < 0.001 |
260 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
Crystal data top
C4H4FN3O·0.5C4H9NO | γ = 107.774 (12)° |
Mr = 172.67 | V = 778.7 (2) Å3 |
Triclinic, P1 | Z = 4 |
a = 7.7247 (12) Å | Mo Kα radiation |
b = 8.2840 (13) Å | µ = 0.13 mm−1 |
c = 13.238 (2) Å | T = 173 K |
α = 90.204 (13)° | 0.40 × 0.25 × 0.10 mm |
β = 104.336 (12)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1647 reflections with I > 2σ(I) |
8171 measured reflections | Rint = 0.169 |
2911 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.069 | 0 restraints |
wR(F2) = 0.199 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.94 | Δρmax = 0.29 e Å−3 |
2911 reflections | Δρmin = −0.31 e Å−3 |
260 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
N1 | 0.6755 (4) | 0.4441 (4) | 0.4706 (2) | 0.0325 (7) | |
H1 | 0.617 (6) | 0.370 (6) | 0.505 (4) | 0.056 (13)* | |
C2 | 0.8323 (4) | 0.5758 (4) | 0.5227 (3) | 0.0289 (7) | |
N3 | 0.9256 (4) | 0.6894 (4) | 0.4629 (2) | 0.0318 (7) | |
C4 | 0.8722 (4) | 0.6688 (4) | 0.3592 (3) | 0.0302 (7) | |
C5 | 0.7115 (4) | 0.5274 (5) | 0.3070 (3) | 0.0342 (8) | |
C6 | 0.6156 (5) | 0.4204 (4) | 0.3648 (3) | 0.0367 (8) | |
H6 | 0.5066 | 0.3286 | 0.3317 | 0.044* | |
O21 | 0.8860 (3) | 0.5886 (3) | 0.61967 (19) | 0.0373 (6) | |
N41 | 0.9677 (4) | 0.7820 (4) | 0.3044 (3) | 0.0393 (8) | |
H41A | 1.065 (6) | 0.871 (6) | 0.348 (4) | 0.053 (12)* | |
H41B | 0.944 (6) | 0.752 (6) | 0.236 (4) | 0.057 (13)* | |
F51 | 0.6585 (3) | 0.5103 (3) | 0.20080 (17) | 0.0507 (6) | |
N1' | 0.2381 (4) | −0.0518 (4) | 0.5760 (2) | 0.0344 (7) | |
H1' | 0.126 (7) | −0.152 (7) | 0.530 (4) | 0.067 (14)* | |
C2' | 0.3343 (4) | 0.0753 (4) | 0.5237 (3) | 0.0312 (8) | |
N3' | 0.4837 (4) | 0.2039 (4) | 0.5831 (2) | 0.0315 (7) | |
C4' | 0.5436 (4) | 0.2019 (4) | 0.6861 (3) | 0.0322 (8) | |
C5' | 0.4465 (5) | 0.0634 (5) | 0.7372 (3) | 0.0356 (8) | |
C6' | 0.2937 (5) | −0.0575 (5) | 0.6810 (3) | 0.0379 (9) | |
H6' | 0.2248 | −0.1466 | 0.7144 | 0.046* | |
O21' | 0.2856 (3) | 0.0705 (3) | 0.42708 (19) | 0.0386 (6) | |
N41' | 0.6917 (4) | 0.3294 (4) | 0.7417 (3) | 0.0389 (8) | |
H41C | 0.737 (6) | 0.400 (6) | 0.697 (4) | 0.060 (13)* | |
H41D | 0.745 (5) | 0.320 (5) | 0.807 (3) | 0.036 (10)* | |
F51' | 0.5092 (3) | 0.0644 (3) | 0.84358 (17) | 0.0502 (6) | |
C1D | 1.2784 (6) | 0.2097 (7) | 1.0031 (4) | 0.0585 (12) | |
H1DA | 1.3251 | 0.1847 | 1.0752 | 0.088* | 0.657 (19) |
H1DB | 1.3700 | 0.3107 | 0.9870 | 0.088* | 0.657 (19) |
H1DC | 1.2607 | 0.1125 | 0.9548 | 0.088* | 0.657 (19) |
H1DD | 1.3785 | 0.1742 | 1.0489 | 0.088* | 0.343 (19) |
H1DE | 1.3327 | 0.3232 | 0.9816 | 0.088* | 0.343 (19) |
H1DF | 1.2174 | 0.1286 | 0.9410 | 0.088* | 0.343 (19) |
C2D | 1.0927 (10) | 0.2425 (7) | 0.9911 (6) | 0.036 (2) | 0.657 (19) |
O21D | 0.9921 (4) | 0.2783 (4) | 0.9091 (2) | 0.0559 (8) | |
N3D | 1.0404 (11) | 0.2394 (7) | 1.0790 (6) | 0.039 (2) | 0.657 (19) |
C4D | 0.8578 (6) | 0.2796 (6) | 1.0730 (4) | 0.0590 (12) | |
H4DA | 0.8326 | 0.2739 | 1.1421 | 0.088* | 0.657 (19) |
H4DB | 0.7533 | 0.1964 | 1.0227 | 0.088* | 0.657 (19) |
H4DC | 0.8703 | 0.3941 | 1.0503 | 0.088* | 0.657 (19) |
H4DD | 0.9062 | 0.2530 | 1.1445 | 0.088* | 0.343 (19) |
H4DE | 0.7304 | 0.2012 | 1.0433 | 0.088* | 0.343 (19) |
H4DF | 0.8541 | 0.3968 | 1.0742 | 0.088* | 0.343 (19) |
C5D | 1.1362 (7) | 0.1816 (7) | 1.1763 (3) | 0.0614 (13) | |
H5DA | 1.0742 | 0.1903 | 1.2314 | 0.092* | 0.657 (19) |
H5DB | 1.2684 | 0.2531 | 1.1984 | 0.092* | 0.657 (19) |
H5DC | 1.1297 | 0.0630 | 1.1636 | 0.092* | 0.657 (19) |
H5DD | 1.2482 | 0.1483 | 1.2068 | 0.092* | 0.343 (19) |
H5DE | 1.0232 | 0.0896 | 1.1799 | 0.092* | 0.343 (19) |
H5DF | 1.1430 | 0.2850 | 1.2154 | 0.092* | 0.343 (19) |
C2D' | 0.9825 (19) | 0.2610 (13) | 1.0080 (11) | 0.033 (4) | 0.343 (19) |
N3D' | 1.128 (2) | 0.2150 (15) | 1.0640 (10) | 0.041 (4) | 0.343 (19) |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0272 (13) | 0.0271 (15) | 0.0416 (17) | 0.0046 (11) | 0.0109 (12) | 0.0108 (13) |
C2 | 0.0236 (15) | 0.0214 (16) | 0.0420 (19) | 0.0058 (12) | 0.0107 (13) | 0.0088 (14) |
N3 | 0.0242 (13) | 0.0301 (15) | 0.0406 (17) | 0.0047 (11) | 0.0123 (11) | 0.0081 (13) |
C4 | 0.0266 (16) | 0.0265 (17) | 0.0388 (19) | 0.0078 (13) | 0.0118 (14) | 0.0057 (15) |
C5 | 0.0264 (16) | 0.0357 (19) | 0.0370 (19) | 0.0053 (14) | 0.0076 (14) | 0.0005 (15) |
C6 | 0.0262 (16) | 0.0303 (18) | 0.051 (2) | 0.0064 (14) | 0.0091 (15) | 0.0034 (16) |
O21 | 0.0382 (13) | 0.0316 (13) | 0.0393 (14) | 0.0054 (10) | 0.0124 (11) | 0.0097 (11) |
N41 | 0.0355 (16) | 0.0408 (19) | 0.0380 (18) | 0.0038 (14) | 0.0133 (14) | 0.0101 (15) |
F51 | 0.0453 (12) | 0.0554 (15) | 0.0419 (13) | 0.0020 (10) | 0.0117 (10) | 0.0019 (11) |
N1' | 0.0325 (15) | 0.0247 (15) | 0.0420 (17) | −0.0003 (12) | 0.0141 (13) | 0.0060 (13) |
C2' | 0.0304 (16) | 0.0239 (17) | 0.043 (2) | 0.0104 (13) | 0.0146 (14) | 0.0128 (14) |
N3' | 0.0237 (13) | 0.0245 (14) | 0.0432 (17) | 0.0030 (11) | 0.0087 (11) | 0.0094 (12) |
C4' | 0.0236 (16) | 0.0285 (17) | 0.048 (2) | 0.0095 (13) | 0.0147 (14) | 0.0123 (15) |
C5' | 0.0300 (17) | 0.0358 (19) | 0.043 (2) | 0.0092 (15) | 0.0138 (15) | 0.0146 (16) |
C6' | 0.0360 (18) | 0.034 (2) | 0.047 (2) | 0.0087 (15) | 0.0203 (16) | 0.0137 (16) |
O21' | 0.0371 (13) | 0.0326 (13) | 0.0413 (15) | 0.0039 (10) | 0.0104 (11) | 0.0080 (11) |
N41' | 0.0259 (14) | 0.0381 (18) | 0.0445 (19) | 0.0021 (12) | 0.0049 (13) | 0.0114 (15) |
F51' | 0.0438 (12) | 0.0551 (14) | 0.0406 (12) | 0.0007 (10) | 0.0097 (9) | 0.0145 (11) |
C1D | 0.039 (2) | 0.066 (3) | 0.071 (3) | 0.018 (2) | 0.013 (2) | 0.003 (2) |
C2D | 0.038 (4) | 0.036 (3) | 0.028 (4) | 0.003 (2) | 0.006 (3) | 0.001 (2) |
O21D | 0.0513 (16) | 0.070 (2) | 0.0404 (16) | 0.0116 (14) | 0.0099 (13) | 0.0199 (14) |
N3D | 0.042 (4) | 0.045 (3) | 0.027 (4) | 0.009 (3) | 0.009 (3) | 0.006 (2) |
C4D | 0.062 (3) | 0.054 (3) | 0.072 (3) | 0.016 (2) | 0.041 (2) | 0.010 (2) |
C5D | 0.074 (3) | 0.069 (3) | 0.033 (2) | 0.017 (2) | 0.006 (2) | 0.013 (2) |
C2D' | 0.028 (7) | 0.030 (6) | 0.036 (8) | −0.001 (4) | 0.011 (6) | −0.007 (5) |
N3D' | 0.040 (7) | 0.049 (6) | 0.034 (8) | 0.012 (5) | 0.011 (5) | −0.002 (5) |
Geometric parameters (Å, º) top
N1—C6 | 1.356 (5) | C1D—N3D' | 1.584 (17) |
N1—C2 | 1.381 (4) | C1D—H1DA | 0.9800 |
N1—H1 | 0.85 (5) | C1D—H1DB | 0.9800 |
C2—O21 | 1.240 (4) | C1D—H1DC | 0.9800 |
C2—N3 | 1.381 (4) | C1D—H1DD | 0.9800 |
N3—C4 | 1.326 (4) | C1D—H1DE | 0.9800 |
C4—N41 | 1.340 (4) | C1D—H1DF | 0.9800 |
C4—C5 | 1.439 (5) | C2D—O21D | 1.262 (8) |
C5—C6 | 1.344 (5) | C2D—N3D | 1.322 (14) |
C5—F51 | 1.357 (4) | O21D—C2D' | 1.335 (14) |
C6—H6 | 0.9500 | N3D—C5D | 1.478 (8) |
N41—H41A | 0.94 (5) | N3D—C4D | 1.529 (10) |
N41—H41B | 0.90 (5) | C4D—C2D' | 1.481 (15) |
N1'—C6' | 1.355 (5) | C4D—H4DA | 0.9800 |
N1'—C2' | 1.388 (4) | C4D—H4DB | 0.9800 |
N1'—H1' | 1.06 (5) | C4D—H4DC | 0.9800 |
C2'—O21' | 1.237 (4) | C4D—H4DD | 0.9800 |
C2'—N3' | 1.371 (5) | C4D—H4DE | 0.9800 |
N3'—C4' | 1.329 (5) | C4D—H4DF | 0.9800 |
C4'—N41' | 1.344 (5) | C5D—N3D' | 1.501 (14) |
C4'—C5' | 1.438 (4) | C5D—H5DA | 0.9800 |
C5'—C6' | 1.337 (5) | C5D—H5DB | 0.9800 |
C5'—F51' | 1.370 (4) | C5D—H5DC | 0.9800 |
C6'—H6' | 0.9500 | C5D—H5DD | 0.9800 |
N41'—H41C | 0.89 (5) | C5D—H5DE | 0.9800 |
N41'—H41D | 0.88 (4) | C5D—H5DF | 0.9800 |
C1D—C2D | 1.511 (9) | C2D'—N3D' | 1.34 (3) |
| | | |
C6—N1—C2 | 122.6 (3) | O21D—C2D—N3D | 119.1 (9) |
C6—N1—H1 | 117 (3) | O21D—C2D—C1D | 127.0 (6) |
C2—N1—H1 | 120 (3) | N3D—C2D—C1D | 113.8 (7) |
O21—C2—N1 | 120.4 (3) | C2D—N3D—C4D | 116.3 (7) |
O21—C2—N3 | 122.2 (3) | C5D—N3D—C4D | 119.9 (6) |
N1—C2—N3 | 117.5 (3) | C2D'—C4D—H4DA | 147.3 |
C4—N3—C2 | 121.4 (3) | N3D—C4D—H4DA | 109.5 |
N3—C4—N41 | 119.2 (3) | C2D'—C4D—H4DB | 88.0 |
N3—C4—C5 | 119.8 (3) | N3D—C4D—H4DB | 109.5 |
N41—C4—C5 | 120.9 (3) | H4DA—C4D—H4DB | 109.5 |
C6—C5—F51 | 122.3 (3) | C2D'—C4D—H4DC | 89.0 |
C6—C5—C4 | 119.0 (3) | N3D—C4D—H4DC | 109.5 |
F51—C5—C4 | 118.7 (3) | H4DA—C4D—H4DC | 109.5 |
C5—C6—N1 | 119.5 (3) | H4DB—C4D—H4DC | 109.5 |
C5—C6—H6 | 120.2 | C2D'—C4D—H4DD | 109.5 |
N1—C6—H6 | 120.2 | N3D—C4D—H4DD | 71.6 |
C4—N41—H41A | 112 (3) | H4DB—C4D—H4DD | 121.6 |
C4—N41—H41B | 116 (3) | H4DC—C4D—H4DD | 125.4 |
H41A—N41—H41B | 130 (4) | C2D'—C4D—H4DE | 109.5 |
C6'—N1'—C2' | 122.5 (3) | N3D—C4D—H4DE | 125.4 |
C6'—N1'—H1' | 120 (3) | H4DA—C4D—H4DE | 89.1 |
C2'—N1'—H1' | 117 (3) | H4DC—C4D—H4DE | 111.5 |
O21'—C2'—N3' | 122.2 (3) | H4DD—C4D—H4DE | 109.5 |
O21'—C2'—N1' | 120.5 (3) | C2D'—C4D—H4DF | 109.5 |
N3'—C2'—N1' | 117.4 (3) | N3D—C4D—H4DF | 121.7 |
C4'—N3'—C2' | 121.8 (3) | H4DA—C4D—H4DF | 87.9 |
N3'—C4'—N41' | 120.1 (3) | H4DB—C4D—H4DF | 116.1 |
N3'—C4'—C5' | 119.2 (3) | H4DD—C4D—H4DF | 109.5 |
N41'—C4'—C5' | 120.6 (3) | H4DE—C4D—H4DF | 109.5 |
C6'—C5'—F51' | 122.0 (3) | N3D—C5D—H5DA | 109.5 |
C6'—C5'—C4' | 119.6 (3) | N3D'—C5D—H5DA | 141.6 |
F51'—C5'—C4' | 118.4 (3) | N3D—C5D—H5DB | 109.5 |
C5'—C6'—N1' | 119.4 (3) | N3D'—C5D—H5DB | 91.2 |
C5'—C6'—H6' | 120.3 | H5DA—C5D—H5DB | 109.5 |
N1'—C6'—H6' | 120.3 | N3D—C5D—H5DC | 109.5 |
C4'—N41'—H41C | 108 (3) | N3D'—C5D—H5DC | 92.4 |
C4'—N41'—H41D | 120 (3) | H5DA—C5D—H5DC | 109.5 |
H41C—N41'—H41D | 129 (4) | H5DB—C5D—H5DC | 109.5 |
C2D—C1D—H1DA | 109.5 | N3D—C5D—H5DD | 141.5 |
N3D'—C1D—H1DA | 72.5 | N3D'—C5D—H5DD | 109.5 |
C2D—C1D—H1DB | 109.5 | H5DA—C5D—H5DD | 108.6 |
N3D'—C1D—H1DB | 124.4 | H5DB—C5D—H5DD | 51.2 |
H1DA—C1D—H1DB | 109.5 | H5DC—C5D—H5DD | 61.6 |
C2D—C1D—H1DC | 109.5 | N3D—C5D—H5DE | 93.9 |
N3D'—C1D—H1DC | 122.3 | N3D'—C5D—H5DE | 109.5 |
H1DA—C1D—H1DC | 109.5 | H5DA—C5D—H5DE | 60.6 |
H1DB—C1D—H1DC | 109.5 | H5DB—C5D—H5DE | 156.7 |
C2D—C1D—H1DD | 146.4 | H5DC—C5D—H5DE | 60.4 |
N3D'—C1D—H1DD | 109.5 | H5DD—C5D—H5DE | 109.5 |
H1DB—C1D—H1DD | 91.8 | N3D—C5D—H5DF | 89.8 |
H1DC—C1D—H1DD | 86.1 | N3D'—C5D—H5DF | 109.5 |
C2D—C1D—H1DE | 90.3 | H5DA—C5D—H5DF | 52.2 |
N3D'—C1D—H1DE | 109.5 | H5DB—C5D—H5DF | 71.8 |
H1DA—C1D—H1DE | 119.3 | H5DC—C5D—H5DF | 158.1 |
H1DC—C1D—H1DE | 116.7 | H5DD—C5D—H5DF | 109.5 |
H1DD—C1D—H1DE | 109.5 | H5DE—C5D—H5DF | 109.5 |
C2D—C1D—H1DF | 87.7 | O21D—C2D'—N3D' | 110.8 (14) |
N3D'—C1D—H1DF | 109.5 | O21D—C2D'—C4D | 137.8 (12) |
H1DA—C1D—H1DF | 127.5 | N3D'—C2D'—C4D | 111.4 (13) |
H1DB—C1D—H1DF | 110.4 | C2D'—N3D'—C5D | 118.6 (16) |
H1DD—C1D—H1DF | 109.5 | C2D'—N3D'—C1D | 114.5 (12) |
H1DE—C1D—H1DF | 109.5 | C5D—N3D'—C1D | 126.8 (12) |
| | | |
C6—N1—C2—O21 | −177.2 (3) | C2'—N1'—C6'—C5' | 0.2 (5) |
C6—N1—C2—N3 | 2.2 (5) | N3D'—C1D—C2D—O21D | −178.1 (10) |
O21—C2—N3—C4 | 176.4 (3) | N3D'—C1D—C2D—N3D | 5.1 (8) |
N1—C2—N3—C4 | −3.0 (5) | N3D—C2D—O21D—C2D' | −1.3 (7) |
C2—N3—C4—N41 | −179.7 (3) | C1D—C2D—O21D—C2D' | −177.9 (10) |
C2—N3—C4—C5 | 1.3 (5) | O21D—C2D—N3D—C5D | 173.3 (5) |
N3—C4—C5—C6 | 1.4 (5) | C1D—C2D—N3D—C5D | −9.7 (8) |
N41—C4—C5—C6 | −177.6 (3) | O21D—C2D—N3D—C4D | 0.3 (7) |
N3—C4—C5—F51 | 179.3 (3) | C1D—C2D—N3D—C4D | 177.3 (5) |
N41—C4—C5—F51 | 0.3 (5) | C2D—N3D—C4D—C2D' | 1.0 (7) |
F51—C5—C6—N1 | 180.0 (3) | C5D—N3D—C4D—C2D' | −172.2 (9) |
C4—C5—C6—N1 | −2.2 (5) | C2D—N3D—C5D—N3D' | 1.3 (8) |
C2—N1—C6—C5 | 0.4 (5) | C4D—N3D—C5D—N3D' | 174.0 (12) |
C6'—N1'—C2'—O21' | 175.7 (3) | C2D—O21D—C2D'—N3D' | −2.1 (6) |
C6'—N1'—C2'—N3' | −4.2 (5) | C2D—O21D—C2D'—C4D | 177.4 (15) |
O21'—C2'—N3'—C4' | −175.1 (3) | N3D—C4D—C2D'—O21D | −177.0 (16) |
N1'—C2'—N3'—C4' | 4.8 (5) | N3D—C4D—C2D'—N3D' | 2.4 (7) |
C2'—N3'—C4'—N41' | 179.3 (3) | O21D—C2D'—N3D'—C5D | −177.3 (8) |
C2'—N3'—C4'—C5' | −1.6 (5) | C4D—C2D'—N3D'—C5D | 3.1 (12) |
N3'—C4'—C5'—C6' | −2.5 (5) | O21D—C2D'—N3D'—C1D | 5.2 (11) |
N41'—C4'—C5'—C6' | 176.6 (3) | C4D—C2D'—N3D'—C1D | −174.4 (7) |
N3'—C4'—C5'—F51' | −179.4 (3) | N3D—C5D—N3D'—C2D' | −5.3 (6) |
N41'—C4'—C5'—F51' | −0.3 (5) | N3D—C5D—N3D'—C1D | 171.9 (16) |
F51'—C5'—C6'—N1' | 179.8 (3) | C2D—C1D—N3D'—C2D' | −2.1 (6) |
C4'—C5'—C6'—N1' | 3.1 (5) | C2D—C1D—N3D'—C5D | −179.4 (14) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···N3′ | 0.85 (5) | 1.92 (5) | 2.772 (4) | 179 (5) |
N41—H41A···O21′i | 0.94 (5) | 2.03 (5) | 2.965 (4) | 174 (4) |
N41—H41B···O21Dii | 0.90 (5) | 2.13 (5) | 2.976 (5) | 157 (4) |
N1′—H1′···N3iii | 1.06 (5) | 1.72 (5) | 2.774 (4) | 173 (4) |
N41′—H41C···O21 | 0.89 (5) | 2.08 (5) | 2.955 (4) | 168 (4) |
N41′—H41D···O21D | 0.88 (4) | 2.17 (4) | 2.922 (4) | 143 (3) |
Symmetry codes: (i) x+1, y+1, z; (ii) −x+2, −y+1, −z+1; (iii) x−1, y−1, z. |
(III) 5-fluorocytosine hemihydrate
top
Crystal data top
C4H4FN3O·0.5H2O | F(000) = 1136 |
Mr = 138.11 | Dx = 1.609 Mg m−3 |
Monoclinic, Cc | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C -2yc | Cell parameters from 2945 reflections |
a = 14.7039 (13) Å | θ = 3.4–25.8° |
b = 12.4546 (10) Å | µ = 0.15 mm−1 |
c = 13.7921 (14) Å | T = 173 K |
β = 115.474 (7)° | Block, colourless |
V = 2280.2 (4) Å3 | 0.30 × 0.30 × 0.20 mm |
Z = 16 | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1631 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.104 |
Graphite monochromator | θmax = 25.7°, θmin = 3.4° |
ω scans | h = −17→17 |
14246 measured reflections | k = −15→15 |
2141 independent reflections | l = −16→16 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.078 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.88 | w = 1/[σ2(Fo2) + (0.0397P)2] where P = (Fo2 + 2Fc2)/3 |
2141 reflections | (Δ/σ)max < 0.001 |
355 parameters | Δρmax = 0.19 e Å−3 |
8 restraints | Δρmin = −0.32 e Å−3 |
Crystal data top
C4H4FN3O·0.5H2O | V = 2280.2 (4) Å3 |
Mr = 138.11 | Z = 16 |
Monoclinic, Cc | Mo Kα radiation |
a = 14.7039 (13) Å | µ = 0.15 mm−1 |
b = 12.4546 (10) Å | T = 173 K |
c = 13.7921 (14) Å | 0.30 × 0.30 × 0.20 mm |
β = 115.474 (7)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1631 reflections with I > 2σ(I) |
14246 measured reflections | Rint = 0.104 |
2141 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.038 | 8 restraints |
wR(F2) = 0.078 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.88 | Δρmax = 0.19 e Å−3 |
2141 reflections | Δρmin = −0.32 e Å−3 |
355 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1A | 0.7211 (3) | 0.6651 (3) | 0.5596 (3) | 0.0215 (8) | |
H1A | 0.7418 | 0.7315 | 0.5602 | 0.026* | |
C2A | 0.6239 (3) | 0.6470 (3) | 0.5445 (3) | 0.0204 (10) | |
N3A | 0.5915 (3) | 0.5442 (3) | 0.5449 (3) | 0.0204 (8) | |
C4A | 0.6545 (3) | 0.4629 (4) | 0.5575 (3) | 0.0193 (10) | |
C5A | 0.7542 (3) | 0.4821 (4) | 0.5719 (4) | 0.0232 (10) | |
C6A | 0.7862 (3) | 0.5826 (4) | 0.5737 (3) | 0.0245 (10) | |
H6A | 0.8535 | 0.5963 | 0.5847 | 0.029* | |
O21A | 0.5662 (2) | 0.7255 (2) | 0.5311 (3) | 0.0263 (8) | |
N41A | 0.6204 (3) | 0.3632 (3) | 0.5544 (3) | 0.0262 (9) | |
H41A | 0.5578 | 0.3524 | 0.5442 | 0.031* | |
H41B | 0.6605 | 0.3081 | 0.5625 | 0.031* | |
F51A | 0.8156 (2) | 0.3962 (2) | 0.5869 (2) | 0.0375 (7) | |
N1B | 0.3981 (3) | 0.5036 (3) | 0.5387 (3) | 0.0202 (8) | |
H1B | 0.4572 | 0.5148 | 0.5389 | 0.024* | |
C2B | 0.3681 (3) | 0.4000 (3) | 0.5427 (3) | 0.0179 (9) | |
N3B | 0.2762 (3) | 0.3810 (3) | 0.5405 (3) | 0.0185 (8) | |
C4B | 0.2158 (3) | 0.4628 (4) | 0.5338 (3) | 0.0199 (10) | |
C5B | 0.2488 (3) | 0.5692 (4) | 0.5322 (3) | 0.0216 (10) | |
C6B | 0.3397 (3) | 0.5890 (4) | 0.5344 (3) | 0.0210 (10) | |
H6B | 0.3619 | 0.6604 | 0.5330 | 0.025* | |
O21B | 0.4265 (2) | 0.3249 (2) | 0.5486 (3) | 0.0258 (7) | |
N41B | 0.1242 (3) | 0.4449 (3) | 0.5280 (3) | 0.0249 (9) | |
H41C | 0.1036 | 0.3787 | 0.5286 | 0.030* | |
H41D | 0.0844 | 0.4993 | 0.5235 | 0.030* | |
F51B | 0.1859 (2) | 0.6524 (2) | 0.5265 (2) | 0.0332 (7) | |
N1C | 0.6303 (3) | 0.3450 (3) | 0.7936 (3) | 0.0227 (9) | |
H1C | 0.6110 | 0.4105 | 0.7995 | 0.027* | |
C2C | 0.7256 (3) | 0.3297 (3) | 0.8011 (3) | 0.0190 (9) | |
N3C | 0.7559 (3) | 0.2280 (3) | 0.7933 (3) | 0.0195 (8) | |
C4C | 0.6945 (3) | 0.1450 (4) | 0.7797 (3) | 0.0188 (9) | |
C5C | 0.5955 (3) | 0.1631 (4) | 0.7710 (4) | 0.0254 (11) | |
C6C | 0.5644 (3) | 0.2621 (4) | 0.7771 (3) | 0.0231 (10) | |
H6C | 0.4982 | 0.2749 | 0.7703 | 0.028* | |
O21C | 0.7820 (2) | 0.4093 (2) | 0.8153 (2) | 0.0271 (7) | |
N41C | 0.7259 (3) | 0.0468 (3) | 0.7751 (3) | 0.0252 (9) | |
H41E | 0.7872 | 0.0363 | 0.7810 | 0.030* | |
H41F | 0.6855 | −0.0082 | 0.7661 | 0.030* | |
F51C | 0.5349 (2) | 0.0759 (2) | 0.7559 (2) | 0.0350 (7) | |
N1D | 0.9455 (3) | 0.1854 (3) | 0.7892 (3) | 0.0206 (8) | |
H1D | 0.8864 | 0.1970 | 0.7890 | 0.025* | |
C2D | 0.9780 (3) | 0.0815 (3) | 0.7928 (3) | 0.0199 (10) | |
N3D | 1.0713 (3) | 0.0633 (3) | 0.7972 (3) | 0.0196 (8) | |
C4D | 1.1291 (3) | 0.1473 (4) | 0.7975 (3) | 0.0189 (9) | |
C5D | 1.0911 (3) | 0.2535 (4) | 0.7884 (4) | 0.0249 (11) | |
C6D | 1.0015 (3) | 0.2710 (4) | 0.7860 (4) | 0.0247 (10) | |
H6D | 0.9767 | 0.3421 | 0.7820 | 0.030* | |
O21D | 0.9219 (2) | 0.0058 (3) | 0.7924 (3) | 0.0259 (7) | |
N41D | 1.2219 (3) | 0.1290 (3) | 0.8066 (3) | 0.0233 (9) | |
H41G | 1.2445 | 0.0627 | 0.8122 | 0.028* | |
H41H | 1.2605 | 0.1831 | 0.8069 | 0.028* | |
F51D | 1.1519 (2) | 0.3343 (2) | 0.7862 (2) | 0.0371 (7) | |
O1W | 0.9690 (2) | 0.3874 (3) | 0.9907 (3) | 0.0337 (8) | |
H1WA | 0.970 (4) | 0.324 (2) | 1.018 (3) | 0.040* | |
H1WB | 0.918 (3) | 0.390 (4) | 0.924 (2) | 0.040* | |
O2W | 0.3804 (2) | 0.7076 (3) | 0.3471 (3) | 0.0314 (8) | |
H2WA | 0.433 (3) | 0.712 (4) | 0.412 (2) | 0.038* | |
H2WB | 0.387 (4) | 0.648 (3) | 0.317 (3) | 0.038* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1A | 0.0149 (18) | 0.018 (2) | 0.032 (2) | −0.0035 (15) | 0.0105 (16) | 0.0006 (17) |
C2A | 0.019 (2) | 0.019 (2) | 0.023 (2) | −0.0039 (19) | 0.0092 (19) | −0.0016 (19) |
N3A | 0.0187 (19) | 0.017 (2) | 0.027 (2) | −0.0036 (16) | 0.0114 (17) | −0.0038 (16) |
C4A | 0.022 (2) | 0.020 (2) | 0.019 (2) | −0.0003 (19) | 0.011 (2) | 0.0022 (18) |
C5A | 0.017 (2) | 0.021 (3) | 0.031 (3) | 0.006 (2) | 0.010 (2) | 0.003 (2) |
C6A | 0.017 (2) | 0.029 (3) | 0.030 (3) | 0.0021 (19) | 0.012 (2) | 0.005 (2) |
O21A | 0.0189 (17) | 0.0152 (16) | 0.046 (2) | 0.0016 (13) | 0.0151 (15) | −0.0007 (14) |
N41A | 0.028 (2) | 0.0150 (19) | 0.042 (2) | −0.0027 (17) | 0.0205 (19) | −0.0016 (17) |
F51A | 0.0302 (15) | 0.0250 (15) | 0.062 (2) | 0.0115 (12) | 0.0248 (14) | 0.0090 (14) |
N1B | 0.0164 (18) | 0.017 (2) | 0.028 (2) | −0.0034 (15) | 0.0109 (16) | 0.0037 (16) |
C2B | 0.016 (2) | 0.015 (2) | 0.021 (2) | −0.0020 (18) | 0.0071 (18) | −0.0021 (17) |
N3B | 0.018 (2) | 0.014 (2) | 0.024 (2) | −0.0011 (17) | 0.0101 (16) | 0.0018 (16) |
C4B | 0.022 (2) | 0.016 (3) | 0.021 (2) | 0.000 (2) | 0.0085 (19) | 0.0018 (18) |
C5B | 0.021 (2) | 0.016 (3) | 0.025 (3) | 0.0033 (18) | 0.008 (2) | 0.0010 (18) |
C6B | 0.022 (2) | 0.015 (2) | 0.028 (3) | 0.0031 (19) | 0.013 (2) | 0.0036 (19) |
O21B | 0.0222 (16) | 0.0145 (16) | 0.0389 (18) | 0.0009 (13) | 0.0114 (14) | 0.0001 (14) |
N41B | 0.024 (2) | 0.012 (2) | 0.042 (2) | −0.0026 (17) | 0.0165 (18) | −0.0054 (17) |
F51B | 0.0325 (15) | 0.0156 (13) | 0.058 (2) | 0.0069 (11) | 0.0255 (14) | 0.0017 (12) |
N1C | 0.021 (2) | 0.022 (2) | 0.028 (2) | 0.0054 (17) | 0.0133 (16) | 0.0026 (17) |
C2C | 0.017 (2) | 0.018 (2) | 0.023 (2) | 0.0030 (18) | 0.0100 (18) | 0.0011 (19) |
N3C | 0.019 (2) | 0.011 (2) | 0.030 (2) | 0.0007 (16) | 0.0121 (17) | 0.0015 (15) |
C4C | 0.019 (2) | 0.019 (2) | 0.019 (2) | 0.0014 (18) | 0.0083 (19) | −0.0002 (18) |
C5C | 0.025 (3) | 0.027 (3) | 0.028 (3) | −0.007 (2) | 0.016 (2) | −0.002 (2) |
C6C | 0.018 (2) | 0.027 (3) | 0.024 (3) | −0.002 (2) | 0.009 (2) | 0.0001 (19) |
O21C | 0.0246 (17) | 0.0159 (16) | 0.041 (2) | −0.0015 (14) | 0.0140 (15) | 0.0004 (14) |
N41C | 0.0202 (19) | 0.017 (2) | 0.040 (2) | −0.0055 (17) | 0.0147 (18) | −0.0025 (18) |
F51C | 0.0255 (14) | 0.0275 (15) | 0.0546 (18) | −0.0085 (12) | 0.0198 (13) | 0.0004 (13) |
N1D | 0.0188 (19) | 0.0140 (19) | 0.034 (2) | 0.0009 (14) | 0.0161 (16) | 0.0032 (16) |
C2D | 0.021 (2) | 0.020 (3) | 0.017 (2) | 0.0011 (19) | 0.0067 (19) | 0.0001 (18) |
N3D | 0.0191 (19) | 0.0159 (19) | 0.025 (2) | −0.0015 (16) | 0.0110 (16) | −0.0009 (16) |
C4D | 0.022 (2) | 0.019 (2) | 0.017 (2) | 0.0003 (18) | 0.0098 (18) | 0.0007 (17) |
C5D | 0.027 (3) | 0.011 (2) | 0.040 (3) | −0.004 (2) | 0.018 (2) | 0.0009 (19) |
C6D | 0.027 (2) | 0.014 (2) | 0.033 (3) | 0.0029 (18) | 0.012 (2) | −0.0010 (19) |
O21D | 0.0245 (17) | 0.0183 (17) | 0.0394 (18) | −0.0029 (14) | 0.0179 (15) | 0.0017 (13) |
N41D | 0.0158 (19) | 0.018 (2) | 0.038 (2) | −0.0022 (16) | 0.0136 (17) | −0.0021 (17) |
F51D | 0.0313 (16) | 0.0180 (15) | 0.070 (2) | −0.0032 (12) | 0.0290 (15) | 0.0025 (14) |
O1W | 0.0221 (16) | 0.0291 (19) | 0.047 (2) | −0.0027 (14) | 0.0117 (15) | 0.0040 (16) |
O2W | 0.0240 (16) | 0.0294 (19) | 0.043 (2) | 0.0009 (14) | 0.0163 (15) | −0.0056 (15) |
Geometric parameters (Å, º) top
N1A—C6A | 1.361 (6) | N1C—H1C | 0.8800 |
N1A—C2A | 1.371 (5) | C2C—O21C | 1.252 (5) |
N1A—H1A | 0.8800 | C2C—N3C | 1.362 (5) |
C2A—O21A | 1.256 (5) | N3C—C4C | 1.331 (5) |
C2A—N3A | 1.366 (5) | C4C—N41C | 1.318 (6) |
N3A—C4A | 1.332 (5) | C4C—C5C | 1.427 (6) |
C4A—N41A | 1.333 (6) | C5C—C6C | 1.330 (7) |
C4A—C5A | 1.413 (6) | C5C—F51C | 1.362 (5) |
C5A—C6A | 1.334 (7) | C6C—H6C | 0.9500 |
C5A—F51A | 1.357 (5) | N41C—H41E | 0.8800 |
C6A—H6A | 0.9500 | N41C—H41F | 0.8800 |
N41A—H41A | 0.8800 | N1D—C6D | 1.360 (6) |
N41A—H41B | 0.8800 | N1D—C2D | 1.373 (6) |
N1B—C6B | 1.353 (6) | N1D—H1D | 0.8800 |
N1B—C2B | 1.372 (5) | C2D—O21D | 1.251 (5) |
N1B—H1B | 0.8800 | C2D—N3D | 1.366 (6) |
C2B—O21B | 1.249 (5) | N3D—C4D | 1.347 (6) |
C2B—N3B | 1.359 (5) | C4D—N41D | 1.335 (5) |
N3B—C4B | 1.328 (6) | C4D—C5D | 1.421 (6) |
C4B—N41B | 1.333 (5) | C5D—C6D | 1.321 (6) |
C4B—C5B | 1.415 (6) | C5D—F51D | 1.355 (5) |
C5B—C6B | 1.346 (6) | C6D—H6D | 0.9500 |
C5B—F51B | 1.369 (5) | N41D—H41G | 0.8800 |
C6B—H6B | 0.9500 | N41D—H41H | 0.8800 |
N41B—H41C | 0.8800 | O1W—H1WA | 0.87 (2) |
N41B—H41D | 0.8800 | O1W—H1WB | 0.90 (2) |
N1C—C6C | 1.366 (6) | O2W—H2WA | 0.90 (2) |
N1C—C2C | 1.373 (5) | O2W—H2WB | 0.88 (2) |
| | | |
C6A—N1A—C2A | 121.4 (4) | C6C—N1C—H1C | 118.8 |
C6A—N1A—H1A | 119.3 | C2C—N1C—H1C | 118.8 |
C2A—N1A—H1A | 119.3 | O21C—C2C—N3C | 122.1 (4) |
O21A—C2A—N3A | 121.0 (4) | O21C—C2C—N1C | 119.2 (4) |
O21A—C2A—N1A | 119.2 (4) | N3C—C2C—N1C | 118.7 (4) |
N3A—C2A—N1A | 119.8 (4) | C4C—N3C—C2C | 120.5 (4) |
C4A—N3A—C2A | 119.2 (4) | N41C—C4C—N3C | 119.8 (4) |
N3A—C4A—N41A | 118.3 (4) | N41C—C4C—C5C | 120.5 (4) |
N3A—C4A—C5A | 120.7 (4) | N3C—C4C—C5C | 119.7 (4) |
N41A—C4A—C5A | 121.0 (4) | C6C—C5C—F51C | 121.9 (4) |
C6A—C5A—F51A | 122.1 (4) | C6C—C5C—C4C | 120.4 (4) |
C6A—C5A—C4A | 119.8 (4) | F51C—C5C—C4C | 117.6 (4) |
F51A—C5A—C4A | 118.1 (4) | C5C—C6C—N1C | 118.2 (4) |
C5A—C6A—N1A | 119.1 (4) | C5C—C6C—H6C | 120.9 |
C5A—C6A—H6A | 120.5 | N1C—C6C—H6C | 120.9 |
N1A—C6A—H6A | 120.5 | C4C—N41C—H41E | 120.0 |
C4A—N41A—H41A | 120.0 | C4C—N41C—H41F | 120.0 |
C4A—N41A—H41B | 120.0 | H41E—N41C—H41F | 120.0 |
H41A—N41A—H41B | 120.0 | C6D—N1D—C2D | 122.3 (4) |
C6B—N1B—C2B | 122.2 (4) | C6D—N1D—H1D | 118.9 |
C6B—N1B—H1B | 118.9 | C2D—N1D—H1D | 118.9 |
C2B—N1B—H1B | 118.9 | O21D—C2D—N3D | 121.5 (4) |
O21B—C2B—N3B | 121.3 (4) | O21D—C2D—N1D | 119.5 (4) |
O21B—C2B—N1B | 118.9 (4) | N3D—C2D—N1D | 119.0 (4) |
N3B—C2B—N1B | 119.8 (4) | C4D—N3D—C2D | 119.5 (4) |
C4B—N3B—C2B | 119.7 (4) | N41D—C4D—N3D | 119.1 (4) |
N3B—C4B—N41B | 120.3 (4) | N41D—C4D—C5D | 121.0 (4) |
N3B—C4B—C5B | 119.7 (4) | N3D—C4D—C5D | 119.9 (4) |
N41B—C4B—C5B | 120.0 (4) | C6D—C5D—F51D | 122.5 (4) |
C6B—C5B—F51B | 120.2 (4) | C6D—C5D—C4D | 120.4 (4) |
C6B—C5B—C4B | 121.0 (4) | F51D—C5D—C4D | 117.1 (4) |
F51B—C5B—C4B | 118.8 (4) | C5D—C6D—N1D | 118.8 (4) |
C5B—C6B—N1B | 117.5 (4) | C5D—C6D—H6D | 120.6 |
C5B—C6B—H6B | 121.3 | N1D—C6D—H6D | 120.6 |
N1B—C6B—H6B | 121.3 | C4D—N41D—H41G | 120.0 |
C4B—N41B—H41C | 120.0 | C4D—N41D—H41H | 120.0 |
C4B—N41B—H41D | 120.0 | H41G—N41D—H41H | 120.0 |
H41C—N41B—H41D | 120.0 | H1WA—O1W—H1WB | 109 (4) |
C6C—N1C—C2C | 122.4 (4) | H2WA—O2W—H2WB | 107 (3) |
| | | |
C6A—N1A—C2A—O21A | −179.5 (4) | C6C—N1C—C2C—O21C | 179.4 (4) |
C6A—N1A—C2A—N3A | 0.8 (6) | C6C—N1C—C2C—N3C | −0.9 (6) |
O21A—C2A—N3A—C4A | 178.8 (4) | O21C—C2C—N3C—C4C | 179.1 (4) |
N1A—C2A—N3A—C4A | −1.6 (6) | N1C—C2C—N3C—C4C | −0.7 (6) |
C2A—N3A—C4A—N41A | −178.0 (4) | C2C—N3C—C4C—N41C | −178.2 (4) |
C2A—N3A—C4A—C5A | 0.9 (6) | C2C—N3C—C4C—C5C | 1.4 (6) |
N3A—C4A—C5A—C6A | 0.5 (7) | N41C—C4C—C5C—C6C | 179.1 (4) |
N41A—C4A—C5A—C6A | 179.4 (4) | N3C—C4C—C5C—C6C | −0.5 (6) |
N3A—C4A—C5A—F51A | 178.4 (4) | N41C—C4C—C5C—F51C | −1.2 (6) |
N41A—C4A—C5A—F51A | −2.7 (6) | N3C—C4C—C5C—F51C | 179.2 (4) |
F51A—C5A—C6A—N1A | −179.1 (4) | F51C—C5C—C6C—N1C | 179.3 (4) |
C4A—C5A—C6A—N1A | −1.2 (7) | C4C—C5C—C6C—N1C | −1.0 (7) |
C2A—N1A—C6A—C5A | 0.6 (6) | C2C—N1C—C6C—C5C | 1.7 (6) |
C6B—N1B—C2B—O21B | −178.7 (4) | C6D—N1D—C2D—O21D | −177.8 (4) |
C6B—N1B—C2B—N3B | 1.2 (6) | C6D—N1D—C2D—N3D | 2.4 (6) |
O21B—C2B—N3B—C4B | −179.7 (4) | O21D—C2D—N3D—C4D | −180.0 (4) |
N1B—C2B—N3B—C4B | 0.4 (6) | N1D—C2D—N3D—C4D | −0.2 (6) |
C2B—N3B—C4B—N41B | 177.8 (4) | C2D—N3D—C4D—N41D | 177.1 (4) |
C2B—N3B—C4B—C5B | −1.9 (6) | C2D—N3D—C4D—C5D | −2.9 (6) |
N3B—C4B—C5B—C6B | 1.9 (7) | N41D—C4D—C5D—C6D | −175.9 (4) |
N41B—C4B—C5B—C6B | −177.8 (4) | N3D—C4D—C5D—C6D | 4.0 (7) |
N3B—C4B—C5B—F51B | −179.2 (4) | N41D—C4D—C5D—F51D | 1.8 (6) |
N41B—C4B—C5B—F51B | 1.1 (6) | N3D—C4D—C5D—F51D | −178.2 (4) |
F51B—C5B—C6B—N1B | −179.2 (4) | F51D—C5D—C6D—N1D | −179.5 (4) |
C4B—C5B—C6B—N1B | −0.3 (6) | C4D—C5D—C6D—N1D | −1.9 (7) |
C2B—N1B—C6B—C5B | −1.2 (6) | C2D—N1D—C6D—C5D | −1.3 (7) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1A···N3Bi | 0.88 | 1.98 | 2.853 (5) | 172 |
N41A—H41A···O21B | 0.88 | 1.99 | 2.858 (5) | 170 |
N1B—H1B···N3A | 0.88 | 1.97 | 2.854 (5) | 177 |
N41B—H41C···O21Aii | 0.88 | 1.99 | 2.869 (5) | 176 |
N41B—H41D···O1Wiii | 0.88 | 2.10 | 2.972 (5) | 170 |
N1C—H1C···N3Div | 0.88 | 1.99 | 2.861 (5) | 173 |
N41C—H41E···O21D | 0.88 | 1.95 | 2.834 (5) | 177 |
N1D—H1D···N3C | 0.88 | 1.98 | 2.862 (5) | 178 |
N41D—H41G···O21Cv | 0.88 | 1.98 | 2.862 (5) | 175 |
N41D—H41H···O2Wvi | 0.88 | 2.10 | 2.961 (5) | 164 |
O1W—H1WA···O21Bvii | 0.87 (2) | 2.06 (3) | 2.906 (5) | 163 (4) |
O1W—H1WB···O21C | 0.90 (2) | 1.93 (3) | 2.786 (5) | 158 (5) |
O2W—H2WA···O21A | 0.90 (2) | 1.95 (2) | 2.826 (5) | 166 (5) |
O2W—H2WB···O21Dviii | 0.88 (2) | 2.05 (3) | 2.898 (5) | 163 (4) |
Symmetry codes: (i) x+1/2, y+1/2, z; (ii) x−1/2, y−1/2, z; (iii) x−1, −y+1, z−1/2; (iv) x−1/2, y+1/2, z; (v) x+1/2, y−1/2, z; (vi) x+1, −y+1, z+1/2; (vii) x+1/2, −y+1/2, z+1/2; (viii) x−1/2, −y+1/2, z−1/2. |
Experimental details
| (I) | (II) | (III) |
Crystal data |
Chemical formula | C4H4FN3O·C2H6OS | C4H4FN3O·0.5C4H9NO | C4H4FN3O·0.5H2O |
Mr | 207.23 | 172.67 | 138.11 |
Crystal system, space group | Monoclinic, P21/c | Triclinic, P1 | Monoclinic, Cc |
Temperature (K) | 173 | 173 | 173 |
a, b, c (Å) | 12.4467 (12), 9.1849 (8), 8.5635 (8) | 7.7247 (12), 8.2840 (13), 13.238 (2) | 14.7039 (13), 12.4546 (10), 13.7921 (14) |
α, β, γ (°) | 90, 107.065 (8), 90 | 90.204 (13), 104.336 (12), 107.774 (12) | 90, 115.474 (7), 90 |
V (Å3) | 935.89 (15) | 778.7 (2) | 2280.2 (4) |
Z | 4 | 4 | 16 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.33 | 0.13 | 0.15 |
Crystal size (mm) | 0.31 × 0.14 × 0.05 | 0.40 × 0.25 × 0.10 | 0.30 × 0.30 × 0.20 |
|
Data collection |
Diffractometer | Stoe IPDS II two-circle diffractometer | Stoe IPDS II two-circle diffractometer | Stoe IPDS II two-circle diffractometer |
Absorption correction | Multi-scan [MULABS (Spek, 2009; Blessing, 1995)] | – | – |
Tmin, Tmax | 0.903, 0.984 | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8061, 1904, 1509 | 8171, 2911, 1647 | 14246, 2141, 1631 |
Rint | 0.049 | 0.169 | 0.104 |
(sin θ/λ)max (Å−1) | 0.625 | 0.609 | 0.609 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.100, 1.03 | 0.069, 0.199, 0.94 | 0.038, 0.078, 0.88 |
No. of reflections | 1904 | 2911 | 2141 |
No. of parameters | 132 | 260 | 355 |
No. of restraints | 0 | 0 | 8 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.26, −0.27 | 0.29, −0.31 | 0.19, −0.32 |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N41—H411···O1M | 0.82 (3) | 2.18 (3) | 2.929 (2) | 152 (2) |
N41—H412···O21i | 0.91 (3) | 2.05 (3) | 2.959 (2) | 174 (2) |
N1—H1···N3ii | 0.88 (3) | 1.88 (3) | 2.762 (2) | 179 (2) |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+1, y−1/2, −z+1/2. |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···N3' | 0.85 (5) | 1.92 (5) | 2.772 (4) | 179 (5) |
N41—H41A···O21'i | 0.94 (5) | 2.03 (5) | 2.965 (4) | 174 (4) |
N41—H41B···O21Dii | 0.90 (5) | 2.13 (5) | 2.976 (5) | 157 (4) |
N1'—H1'···N3iii | 1.06 (5) | 1.72 (5) | 2.774 (4) | 173 (4) |
N41'—H41C···O21 | 0.89 (5) | 2.08 (5) | 2.955 (4) | 168 (4) |
N41'—H41D···O21D | 0.88 (4) | 2.17 (4) | 2.922 (4) | 143 (3) |
Symmetry codes: (i) x+1, y+1, z; (ii) −x+2, −y+1, −z+1; (iii) x−1, y−1, z. |
Hydrogen-bond geometry (Å, º) for (III) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1A···N3Bi | 0.88 | 1.98 | 2.853 (5) | 172 |
N41A—H41A···O21B | 0.88 | 1.99 | 2.858 (5) | 170 |
N1B—H1B···N3A | 0.88 | 1.97 | 2.854 (5) | 177 |
N41B—H41C···O21Aii | 0.88 | 1.99 | 2.869 (5) | 176 |
N41B—H41D···O1Wiii | 0.88 | 2.10 | 2.972 (5) | 170 |
N1C—H1C···N3Div | 0.88 | 1.99 | 2.861 (5) | 173 |
N41C—H41E···O21D | 0.88 | 1.95 | 2.834 (5) | 177 |
N1D—H1D···N3C | 0.88 | 1.98 | 2.862 (5) | 178 |
N41D—H41G···O21Cv | 0.88 | 1.98 | 2.862 (5) | 175 |
N41D—H41H···O2Wvi | 0.88 | 2.10 | 2.961 (5) | 164 |
O1W—H1WA···O21Bvii | 0.87 (2) | 2.06 (3) | 2.906 (5) | 163 (4) |
O1W—H1WB···O21C | 0.90 (2) | 1.93 (3) | 2.786 (5) | 158 (5) |
O2W—H2WA···O21A | 0.90 (2) | 1.95 (2) | 2.826 (5) | 166 (5) |
O2W—H2WB···O21Dviii | 0.88 (2) | 2.05 (3) | 2.898 (5) | 163 (4) |
Symmetry codes: (i) x+1/2, y+1/2, z; (ii) x−1/2, y−1/2, z; (iii) x−1, −y+1, z−1/2; (iv) x−1/2, y+1/2, z; (v) x+1/2, y−1/2, z; (vi) x+1, −y+1, z+1/2; (vii) x+1/2, −y+1/2, z+1/2; (viii) x−1/2, −y+1/2, z−1/2. |
5-Fluorocytosine is commonly used as a systemic antifungal drug. It becomes active by deamination within the fungal cells to 5-fluorouracil, and inhibits RNA and DNA synthesis (Morschhäuser, 2003). Furthermore, there is a novel application as a prodrug against liver tumours (Pierrefite-Carle et al., 1999). The interaction between 5-fluorocytosine and its receptor, as well as the base pairing, can be imitated by hydrogen-bonded complexes (Davis et al., 2003). In order to investigate these interactions, we co-crystallized 5-fluorocytosine together with model compounds containing complementary functional groups. During the co-crystallization screening three new pseudopolymorphs of 5-fluorocytosine were obtained: 5-fluorocytosine dimethyl sulfoxide solvate, (I), 5-fluorocytosine dimethylacetamide hemisolvate, (II), and 5-fluorocytosine hemihydrate, (III). Since 5-fluorocytosine is a rigid molecule, no significant geometric changes are to be expected and the molecules in (I)–(III) show the usual geometry.
Compound (I) crystallizes in the monoclinic space group P21/c, with one 5-fluorocytosine and one dimethyl sulfoxide (DMSO) molecule in the asymmetric unit (Fig. 1). The planar 5-fluorocytosine (r.m.s. deviation 0.016 Å for all non-H atoms) is coplanar with the S and one C atom of the solvent molecule. The other methyl C and the O atom deviate from this plane by 0.753 (4) and 0.890 (3) Å, respectively. Both molecules are connected by an N—H···O hydrogen bond. The 5-fluorocytosine molecules form ribbons parallel to the (302) plane, which are characterized by repeated R22(8) (Bernstein et al., 1995) dimer interactions with the N—H···N and N—H···O hydrogen bonds (Fig. 2).
Compound (II) crystallizes in the triclinic space group P1, with two essentially planar 5-fluorocytosine molecules (r.m.s. deviation 0.091 Å for all non-H atoms in both molecules) and one disordered dimethylacetamide (DMAC) molecule in the asymmetric unit (Fig. 3). Although the solvent molecule is disordered over two sites, all atoms of these two sites lie in a common plane (r.m.s. deviation 0.004 Å for all non-H atoms in both orientations). The 5-fluorocytosine molecules form planar ribbons and show exactly the same hydrogen-bond pattern as in (I). The O atom of the DMAC molecule adopts a position similar to that of the O atom of the DMSO molecule in (I). The planes through the non H-atoms of the solvent molecule and those of the 5-fluorocytosine ribbons enclose a dihedral angle of 68.0 (1)° (Fig. 4). The packing of (II) shows tubes of 5-fluorocytosine ribbons stabilized by N—H···O hydrogen bonds between 5-fluorocytosine and dimethylacetamide molecules (Fig. 5).
Compound (III) crystallizes in the non-centrosymmetric space group Cc, with four 5-fluorocytosine and two water molecules in the asymmetric unit (Fig. 6). There are two planar 5-fluorocytosine dimers, each stabilized by a R22(8) hydrogen-bond pattern. The r.m.s. deviations for all non-H atoms of the dimers are 0.066 and 0.105 Å, respectively. The water molecules are displaced by 2.337 (4) and 2.378 (4) Å from the planes of the dimers. As in (I) and (II), the 5-fluorocytosine molecules form hydrogen-bonded ribbons (Fig. 7). Each dimer is directly connected only to its symmetry equivalents, but not to the other symmetry-independent dimer. Neighbouring layers of the two symmetry-independent dimers are held together by water-mediated OW—H···O and N—H···OW hydrogen bonds (Fig. 8).
In order to compare the hydrogen-bonding patterns of compounds (I)-(III) with other (pseudo)polymorphs of 5-fluorocytosine, a study of the Cambridge Structural Database (CSD, Version?; Allen, 2002) was undertaken. Since (I)–(III) contain neutral 5-fluorocytosine, we restricted the search to neutral molecules and found nine entries: two polymorphs of solvent-free 5-fluorocytosine (forms I and II according to Hulme & Tocher, 2006; CSD refcodes MEBQEQ01 and MEBQEQ), two monohydrates [forms I(h) and II(h); refcodes BIRMEU and BIRMEU03], a hemipentahydrate (refcode MEBQUG), a methanol solvate (refcode MEBQOA) and a 2,2,2-trifluoroethanol solvate (refcode MEBQIU). The other two entries (refcodes BIRMEU01 and BIRMEU02) were redeterminations of the I(h) form (Louis et al., 1982; Portalone & Colapietro, 2006). [Please provide references for all refcodes]
The hydrogen-bond pattern in the anhydrous forms I and II is similar to that in (I)–(III). They form ribbons with repeated R22(8) dimer interactions stabilized by N—H···N and N—H···O hydrogen bonds. Form I crystallizes in the tetragonal space group P41212 with one independent molecule; its crystal packing shows a zigzag arrangement of planar 5-fluorocytosine ribbons, which enclose a dihedral angle of 64.9°. Form II crystallizes in the monoclinic space group P21/n with one independent molecule. In contrast with (I)–(III), the 5-fluorocytosine ribbons in form II are rippled and are connected with adjacent ribbons into layers by R24(8) N—H···O interactions.
The 5-fluorocytosine molecules in form I(h) and in the hemipentahydrate structure show an identical hydrogen-bond pattern to that in (I)–(III). Form I(h) crystallizes in the monoclinic space group P21/c, with two 5-fluorocytosine and two water molecules in the asymmetric unit. The planar 5-fluorocytosine ribbons are stabilized by the water molecules, forming a tube. The water molecules themselves form cyclic tetramers and connect the tubes into a three-dimensional hydrogen-bonded network. The 5-fluorocytosine hemipentahydrate crystallizes in the monoclinic space group P21/c, with two 5-fluorocytosine and five water molecules in the asymmetric unit. The water molecules form a hydrogen-bonded sheet parallel to the bc plane. The 5-fluorocytosine ribbons are stacked nearly perpendicular to the water sheet and are stabilized in columns by water-mediated hydrogen bonds. The asymmetric unit of triclinic II(h) consists of one 5-fluorocytosine and one water molecule. In this case, a different hydrogen-bonding pattern of the 5-fluorocytosine molecules is observed. The 5-fluorocytosine molecules are held together by two kinds of dimer interactions. Although these dimers show the same R22(8) graph set, the hydrogen-bond pattern consists of either two centrosymmetric N—H···O or two centrosymmetric N—H···N interactions. The planar 5-fluorocytosine ribbons are further connected by two symmetry-equivalent water molecules.
In the methanol solvate and the 2,2,2-trifluoroethanol solvate, the 5-fluorocytosine molecules show again the same hydrogen-bonded ribbons as in (I)–(III). The 5-fluorocytosine methanol solvate crystallizes in the monoclinic space group P21/n, with two 5-fluorocytosine and one methanol molecule in the asymmetric unit. Similar to (III), the 5-fluorocytosine molecules are directly connected only to their symmetry equivalents. The methanol molecule holds three different 5-fluorocytosine ribbons together. The 1:1 5-fluorocytosine 2,2,2-trifluoroethanol solvate crystallizes in the monoclinic space group P21/c. The packing shows some similarity to (II). The tubes of 5-fluorocytosine ribbons are stabilized by hydrogen bonds to solvent molecules which participate in N—H···O and O—H···O interactions.
Almost all structures discussed show the same hydrogen-bond pattern between the 5-fluorocytosine molecules. Apparently, the latter molecules prefer the formation of R22(8) dimers, which are further hydrogen-bonded into ribbons. The dimers are usually stabilized by an N—H···O and an N—H···N interaction. Only in the case of monohydrate form II(h) is a different pattern observed: the 5-fluorocytosine molecules form centrosymmetric dimers, which are stabilized either by two N—H···O or by two N—H···N hydrogen bonds. The crystal packing shows layers or tubes depending on the hydrogen bonds formed with adjacent 5-fluorocytosine ribbons or solvent molecules.