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In order to better understand the inter­action between the pharmaceutically active compound 5-fluoro­cytosine [4-amino-5-fluoro­pyrimidin-2(1H)-one] and its receptor, hydrogen-bonded complexes with structurally similar bonding patterns have been investigated. During the cocrystallization screening, three new pseudopolymorphs of 5-fluoro­cytosine were ob­tained, namely 5-fluoro­cytosine dimethyl sulfoxide solvate, C4H4FN3O·C2H6OS, (I), 5-fluoro­cytosine dimethyl­acetamide hemisolvate, C4H4FN3O·0.5C4H9NO, (II), and 5-fluoro­cytosine hemihydrate, C4H4FN3O·0.5H2O, (III). Similar hydrogen-bond patterns are observed in all three crystal structures. The 5-fluoro­cytosine mol­ecules form ribbons with repeated R22(8) dimer inter­actions. These dimers are stabilized by N-H...N and N-H...O hydrogen bonds. The solvent mol­ecules adopt similar positions with respect to 5-fluoro­cytosine. Depending on the hydrogen bonds formed by the solvent, the 5-fluoro­cytosine ribbons form layers or tubes. A database study was carried out to compare the hydrogen-bond pattern of compounds (I)-(III) with those of other (pseudo)polymorphs of 5-fluoro­cytosine.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S010827010903950X/sk3347sup1.cif
Contains datablocks I, II, III, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S010827010903950X/sk3347Isup2.hkl
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S010827010903950X/sk3347IIsup3.hkl
Contains datablock II

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S010827010903950X/sk3347IIIsup4.hkl
Contains datablock III

CCDC references: 760132; 760133; 760134

Comment top

5-Fluorocytosine is commonly used as a systemic antifungal drug. It becomes active by deamination within the fungal cells to 5-fluorouracil, and inhibits RNA and DNA synthesis (Morschhäuser, 2003). Furthermore, there is a novel application as a prodrug against liver tumours (Pierrefite-Carle et al., 1999). The interaction between 5-fluorocytosine and its receptor, as well as the base pairing, can be imitated by hydrogen-bonded complexes (Davis et al., 2003). In order to investigate these interactions, we co-crystallized 5-fluorocytosine together with model compounds containing complementary functional groups. During the co-crystallization screening three new pseudopolymorphs of 5-fluorocytosine were obtained: 5-fluorocytosine dimethyl sulfoxide solvate, (I), 5-fluorocytosine dimethylacetamide hemisolvate, (II), and 5-fluorocytosine hemihydrate, (III). Since 5-fluorocytosine is a rigid molecule, no significant geometric changes are to be expected and the molecules in (I)–(III) show the usual geometry.

Compound (I) crystallizes in the monoclinic space group P21/c, with one 5-fluorocytosine and one dimethyl sulfoxide (DMSO) molecule in the asymmetric unit (Fig. 1). The planar 5-fluorocytosine (r.m.s. deviation 0.016 Å for all non-H atoms) is coplanar with the S and one C atom of the solvent molecule. The other methyl C and the O atom deviate from this plane by 0.753 (4) and 0.890 (3) Å, respectively. Both molecules are connected by an N—H···O hydrogen bond. The 5-fluorocytosine molecules form ribbons parallel to the (302) plane, which are characterized by repeated R22(8) (Bernstein et al., 1995) dimer interactions with the N—H···N and N—H···O hydrogen bonds (Fig. 2).

Compound (II) crystallizes in the triclinic space group P1, with two essentially planar 5-fluorocytosine molecules (r.m.s. deviation 0.091 Å for all non-H atoms in both molecules) and one disordered dimethylacetamide (DMAC) molecule in the asymmetric unit (Fig. 3). Although the solvent molecule is disordered over two sites, all atoms of these two sites lie in a common plane (r.m.s. deviation 0.004 Å for all non-H atoms in both orientations). The 5-fluorocytosine molecules form planar ribbons and show exactly the same hydrogen-bond pattern as in (I). The O atom of the DMAC molecule adopts a position similar to that of the O atom of the DMSO molecule in (I). The planes through the non H-atoms of the solvent molecule and those of the 5-fluorocytosine ribbons enclose a dihedral angle of 68.0 (1)° (Fig. 4). The packing of (II) shows tubes of 5-fluorocytosine ribbons stabilized by N—H···O hydrogen bonds between 5-fluorocytosine and dimethylacetamide molecules (Fig. 5).

Compound (III) crystallizes in the non-centrosymmetric space group Cc, with four 5-fluorocytosine and two water molecules in the asymmetric unit (Fig. 6). There are two planar 5-fluorocytosine dimers, each stabilized by a R22(8) hydrogen-bond pattern. The r.m.s. deviations for all non-H atoms of the dimers are 0.066 and 0.105 Å, respectively. The water molecules are displaced by 2.337 (4) and 2.378 (4) Å from the planes of the dimers. As in (I) and (II), the 5-fluorocytosine molecules form hydrogen-bonded ribbons (Fig. 7). Each dimer is directly connected only to its symmetry equivalents, but not to the other symmetry-independent dimer. Neighbouring layers of the two symmetry-independent dimers are held together by water-mediated OW—H···O and N—H···OW hydrogen bonds (Fig. 8).

In order to compare the hydrogen-bonding patterns of compounds (I)-(III) with other (pseudo)polymorphs of 5-fluorocytosine, a study of the Cambridge Structural Database (CSD, Version?; Allen, 2002) was undertaken. Since (I)–(III) contain neutral 5-fluorocytosine, we restricted the search to neutral molecules and found nine entries: two polymorphs of solvent-free 5-fluorocytosine (forms I and II according to Hulme & Tocher, 2006; CSD refcodes MEBQEQ01 and MEBQEQ), two monohydrates [forms I(h) and II(h); refcodes BIRMEU and BIRMEU03], a hemipentahydrate (refcode MEBQUG), a methanol solvate (refcode MEBQOA) and a 2,2,2-trifluoroethanol solvate (refcode MEBQIU). The other two entries (refcodes BIRMEU01 and BIRMEU02) were redeterminations of the I(h) form (Louis et al., 1982; Portalone & Colapietro, 2006). [Please provide references for all refcodes]

The hydrogen-bond pattern in the anhydrous forms I and II is similar to that in (I)–(III). They form ribbons with repeated R22(8) dimer interactions stabilized by N—H···N and N—H···O hydrogen bonds. Form I crystallizes in the tetragonal space group P41212 with one independent molecule; its crystal packing shows a zigzag arrangement of planar 5-fluorocytosine ribbons, which enclose a dihedral angle of 64.9°. Form II crystallizes in the monoclinic space group P21/n with one independent molecule. In contrast with (I)–(III), the 5-fluorocytosine ribbons in form II are rippled and are connected with adjacent ribbons into layers by R24(8) N—H···O interactions.

The 5-fluorocytosine molecules in form I(h) and in the hemipentahydrate structure show an identical hydrogen-bond pattern to that in (I)–(III). Form I(h) crystallizes in the monoclinic space group P21/c, with two 5-fluorocytosine and two water molecules in the asymmetric unit. The planar 5-fluorocytosine ribbons are stabilized by the water molecules, forming a tube. The water molecules themselves form cyclic tetramers and connect the tubes into a three-dimensional hydrogen-bonded network. The 5-fluorocytosine hemipentahydrate crystallizes in the monoclinic space group P21/c, with two 5-fluorocytosine and five water molecules in the asymmetric unit. The water molecules form a hydrogen-bonded sheet parallel to the bc plane. The 5-fluorocytosine ribbons are stacked nearly perpendicular to the water sheet and are stabilized in columns by water-mediated hydrogen bonds. The asymmetric unit of triclinic II(h) consists of one 5-fluorocytosine and one water molecule. In this case, a different hydrogen-bonding pattern of the 5-fluorocytosine molecules is observed. The 5-fluorocytosine molecules are held together by two kinds of dimer interactions. Although these dimers show the same R22(8) graph set, the hydrogen-bond pattern consists of either two centrosymmetric N—H···O or two centrosymmetric N—H···N interactions. The planar 5-fluorocytosine ribbons are further connected by two symmetry-equivalent water molecules.

In the methanol solvate and the 2,2,2-trifluoroethanol solvate, the 5-fluorocytosine molecules show again the same hydrogen-bonded ribbons as in (I)–(III). The 5-fluorocytosine methanol solvate crystallizes in the monoclinic space group P21/n, with two 5-fluorocytosine and one methanol molecule in the asymmetric unit. Similar to (III), the 5-fluorocytosine molecules are directly connected only to their symmetry equivalents. The methanol molecule holds three different 5-fluorocytosine ribbons together. The 1:1 5-fluorocytosine 2,2,2-trifluoroethanol solvate crystallizes in the monoclinic space group P21/c. The packing shows some similarity to (II). The tubes of 5-fluorocytosine ribbons are stabilized by hydrogen bonds to solvent molecules which participate in N—H···O and O—H···O interactions.

Almost all structures discussed show the same hydrogen-bond pattern between the 5-fluorocytosine molecules. Apparently, the latter molecules prefer the formation of R22(8) dimers, which are further hydrogen-bonded into ribbons. The dimers are usually stabilized by an N—H···O and an N—H···N interaction. Only in the case of monohydrate form II(h) is a different pattern observed: the 5-fluorocytosine molecules form centrosymmetric dimers, which are stabilized either by two N—H···O or by two N—H···N hydrogen bonds. The crystal packing shows layers or tubes depending on the hydrogen bonds formed with adjacent 5-fluorocytosine ribbons or solvent molecules.

Experimental top

Single crystals of (I)–(III) were obtained by co-crystallization of commercially available 5-fluorocytosine with various compounds. The crystallization method used was solvent evaporation at 323 K for (I) and (II), and at room temperature for (III). Compound (I) was obtained by crystallization of 5-fluorocytosine with carbamylurea from dimethyl sulfoxide. 5-Fluorocytosine and N,N'-(pyridine-2,6-diyl)diacetamide dissolved in dimethylacetamide yielded (II). Crystals of (III) were obtained by crystallization of 5-fluorocytosine and 2-aminopyridine in dimethylacetamide. [Please give mole ratios or quantities of reagents]

Refinement top

In (I) and (II), all H atoms were initially located by difference Fourier synthesis. Subsequently, H atoms bonded to C atoms were refined using a riding model, with methyl C—H = 0.98 Å and aromatic C—H = 0.95 Å, and with Uiso(H) = 1.5Ueq(Cmethyl) or 1.2Ueq(C). H atoms bonded to N atoms were refined isotropically. In (III), all H atoms of the 5-fluorocytosine molecules were refined using a riding model, with aromatic C—H = 0.95 Å, and amide and terminal N—H = 0.88 Å, with Uiso(H) = 1.2Ueq(C,N). For the water molecules, the following restraints were applied: O—H = 0.88 (2) and H···H = 1.44 (4) Å.

In (II), all solvent atoms except O are disordered over two positions, with a site occupation factor of 0.66 (2) for the major occupied orientation. However, the positions of the methyl C atoms coincide.

In spite of the E-value distribution, which suggests a centrosymmetric space group (mean value of E2 - 1 = 0.958), the structure solution of (III) in the centrosymmetric space group C2/c failed. 2113 Friedel pairs were merged prior to refinement, due to the absence of anomalous scatterers. The absolute structure was arbitrarily assigned.

Computing details top

For all compounds, data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA (Stoe & Cie, 2001); data reduction: X-AREA (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Version 2.2; Macrae et al., 2008) and XP (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2009).

Figures top
[Figure 1] Fig. 1. A perspective view of (I), with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level and H atoms are shown as small spheres of arbitrary radii. The dashed line indicates the N—H···O hydrogen bond.
[Figure 2] Fig. 2. A partial packing diagram for (I), viewed along [001]. Hydrogen bonds are shown as dashed lines.
[Figure 3] Fig. 3. A perspective view of (II), with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level and H atoms are shown as small spheres of arbitrary radii. Dashed lines indicate hydrogen bonds. The dimethylacetamide molecule is disordered and the minor occupied sites are not shown.
[Figure 4] Fig. 4. The hydrogen-bond pattern of (II), viewed along [001]. Hydrogen bonds are shown as dashed lines. The minor occupied sites of the dimethylacetamide molecules have been omitted.
[Figure 5] Fig. 5. A packing diagram for (II), showing the tubular arrangement of the molecules. Hydrogen bonds are shown as dashed lines. The minor occupied sites of the dimethylacetamide molecules have been omitted.
[Figure 6] Fig. 6. Perspective views of (a) the first dimer (including the solvent water) and (b) the second dimer (including the solvent water) in the asymmetric unit of (III), with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level and H atoms are shown as small spheres of arbitrary radii. Dashed lines indicate hydrogen bonds.
[Figure 7] Fig. 7. The hydrogen-bond pattern of (III), viewed along [001]. Hydrogen bonds are shown as dashed lines.
[Figure 8] Fig. 8. A packing diagram for (III). Hydrogen bonds are shown as dashed lines.
(I) 4-amino-5-fluoropyrimidin-2(1H)-one dimethyl sulfoxide solvate top
Crystal data top
C4H4FN3O·C2H6OSF(000) = 432
Mr = 207.23Dx = 1.471 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6720 reflections
a = 12.4467 (12) Åθ = 4.0–26.6°
b = 9.1849 (8) ŵ = 0.33 mm1
c = 8.5635 (8) ÅT = 173 K
β = 107.065 (8)°Plate, colourless
V = 935.89 (15) Å30.31 × 0.14 × 0.05 mm
Z = 4
Data collection top
Stoe IPDS II two-circle
diffractometer
1904 independent reflections
Radiation source: fine-focus sealed tube1509 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.049
ω scansθmax = 26.4°, θmin = 4.1°
Absorption correction: multi-scan
[MULABS (Spek, 2009; Blessing, 1995)]
h = 1515
Tmin = 0.903, Tmax = 0.984k = 119
8061 measured reflectionsl = 1010
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.03 w = 1/[σ2(Fo2) + (0.0576P)2 + 0.0842P]
where P = (Fo2 + 2Fc2)/3
1904 reflections(Δ/σ)max < 0.001
132 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = 0.27 e Å3
Crystal data top
C4H4FN3O·C2H6OSV = 935.89 (15) Å3
Mr = 207.23Z = 4
Monoclinic, P21/cMo Kα radiation
a = 12.4467 (12) ŵ = 0.33 mm1
b = 9.1849 (8) ÅT = 173 K
c = 8.5635 (8) Å0.31 × 0.14 × 0.05 mm
β = 107.065 (8)°
Data collection top
Stoe IPDS II two-circle
diffractometer
1904 independent reflections
Absorption correction: multi-scan
[MULABS (Spek, 2009; Blessing, 1995)]
1509 reflections with I > 2σ(I)
Tmin = 0.903, Tmax = 0.984Rint = 0.049
8061 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0390 restraints
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.03Δρmax = 0.26 e Å3
1904 reflectionsΔρmin = 0.27 e Å3
132 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.54297 (14)0.11389 (16)0.33369 (18)0.0300 (4)
H10.514 (2)0.035 (3)0.278 (3)0.041 (6)*
C20.49989 (16)0.24607 (18)0.2677 (2)0.0278 (4)
O210.41905 (12)0.25078 (14)0.14085 (16)0.0357 (3)
N30.54901 (13)0.37009 (16)0.34453 (17)0.0274 (3)
C40.63599 (15)0.36507 (19)0.48044 (19)0.0253 (4)
N410.68134 (15)0.48979 (18)0.54895 (19)0.0322 (4)
H4110.739 (2)0.489 (3)0.626 (3)0.038 (6)*
H4120.652 (2)0.574 (3)0.497 (3)0.043 (6)*
C50.67761 (15)0.22642 (19)0.5482 (2)0.0280 (4)
F510.76422 (10)0.22291 (12)0.68946 (13)0.0388 (3)
C60.63106 (16)0.1036 (2)0.4720 (2)0.0305 (4)
H60.65930.01110.51420.037*
S1M0.89390 (5)0.67960 (6)0.90065 (6)0.04211 (18)
O1M0.90100 (14)0.57959 (18)0.76343 (18)0.0499 (4)
C1M1.0318 (2)0.7510 (3)0.9899 (3)0.0589 (7)
H1M11.08320.67141.03840.088*
H1M21.03010.82171.07490.088*
H1M31.05780.79910.90550.088*
C2M0.8305 (2)0.8437 (3)0.8087 (3)0.0583 (6)
H2M10.87260.88220.73730.087*
H2M20.83110.91520.89390.087*
H2M30.75270.82430.74400.087*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0353 (9)0.0167 (7)0.0314 (7)0.0004 (6)0.0007 (6)0.0012 (6)
C20.0305 (9)0.0202 (8)0.0290 (8)0.0006 (7)0.0030 (7)0.0001 (6)
O210.0360 (8)0.0226 (6)0.0370 (7)0.0002 (6)0.0072 (6)0.0004 (5)
N30.0299 (8)0.0182 (7)0.0299 (7)0.0003 (6)0.0021 (6)0.0001 (5)
C40.0266 (9)0.0243 (8)0.0246 (8)0.0007 (7)0.0068 (6)0.0005 (6)
N410.0342 (9)0.0242 (8)0.0306 (8)0.0031 (6)0.0023 (7)0.0023 (6)
C50.0283 (9)0.0269 (9)0.0247 (8)0.0022 (7)0.0014 (7)0.0026 (6)
F510.0383 (6)0.0355 (6)0.0309 (6)0.0001 (5)0.0078 (5)0.0030 (4)
C60.0330 (10)0.0229 (8)0.0312 (9)0.0042 (7)0.0024 (7)0.0042 (7)
S1M0.0453 (3)0.0455 (3)0.0326 (3)0.0113 (3)0.0070 (2)0.0037 (2)
O1M0.0485 (9)0.0477 (9)0.0443 (8)0.0061 (7)0.0007 (7)0.0155 (7)
C1M0.0482 (14)0.0643 (16)0.0507 (14)0.0107 (12)0.0064 (11)0.0185 (12)
C2M0.0550 (15)0.0635 (16)0.0573 (14)0.0118 (13)0.0178 (12)0.0020 (12)
Geometric parameters (Å, º) top
N1—C61.361 (2)C5—F511.3640 (19)
N1—C21.380 (2)C6—H60.9500
N1—H10.88 (3)S1M—O1M1.5143 (16)
C2—O211.246 (2)S1M—C2M1.775 (3)
C2—N31.367 (2)S1M—C1M1.786 (2)
N3—C41.338 (2)C1M—H1M10.9800
C4—N411.334 (2)C1M—H1M20.9800
C4—C51.432 (2)C1M—H1M30.9800
N41—H4110.82 (3)C2M—H2M10.9800
N41—H4120.91 (3)C2M—H2M20.9800
C5—C61.346 (3)C2M—H2M30.9800
C6—N1—C2122.32 (15)C5—C6—H6120.5
C6—N1—H1120.9 (16)N1—C6—H6120.5
C2—N1—H1116.6 (16)O1M—S1M—C2M106.88 (11)
O21—C2—N3121.56 (16)O1M—S1M—C1M106.70 (12)
O21—C2—N1120.33 (16)C2M—S1M—C1M97.16 (14)
N3—C2—N1118.10 (15)S1M—C1M—H1M1109.5
C4—N3—C2121.58 (15)S1M—C1M—H1M2109.5
N41—C4—N3118.87 (16)H1M1—C1M—H1M2109.5
N41—C4—C5121.95 (16)S1M—C1M—H1M3109.5
N3—C4—C5119.18 (15)H1M1—C1M—H1M3109.5
C4—N41—H411120.1 (17)H1M2—C1M—H1M3109.5
C4—N41—H412117.2 (15)S1M—C2M—H2M1109.5
H411—N41—H412122 (2)S1M—C2M—H2M2109.5
C6—C5—F51121.73 (16)H2M1—C2M—H2M2109.5
C6—C5—C4119.71 (16)S1M—C2M—H2M3109.5
F51—C5—C4118.57 (15)H2M1—C2M—H2M3109.5
C5—C6—N1119.09 (16)H2M2—C2M—H2M3109.5
C6—N1—C2—O21179.93 (19)N3—C4—C5—C62.0 (3)
C6—N1—C2—N30.6 (3)N41—C4—C5—F511.8 (3)
O21—C2—N3—C4179.82 (18)N3—C4—C5—F51178.12 (17)
N1—C2—N3—C40.4 (3)F51—C5—C6—N1178.36 (17)
C2—N3—C4—N41179.20 (17)C4—C5—C6—N11.7 (3)
C2—N3—C4—C50.9 (3)C2—N1—C6—C50.5 (3)
N41—C4—C5—C6178.12 (18)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N41—H411···O1M0.82 (3)2.18 (3)2.929 (2)152 (2)
N41—H412···O21i0.91 (3)2.05 (3)2.959 (2)174 (2)
N1—H1···N3ii0.88 (3)1.88 (3)2.762 (2)179 (2)
Symmetry codes: (i) x+1, y+1/2, z+1/2; (ii) x+1, y1/2, z+1/2.
(II) 5-fluorocytosine dimethylacetamide hemisolvate top
Crystal data top
C4H4FN3O·0.5C4H9NOZ = 4
Mr = 172.67F(000) = 360
Triclinic, P1Dx = 1.473 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7247 (12) ÅCell parameters from 3061 reflections
b = 8.2840 (13) Åθ = 3.6–25.6°
c = 13.238 (2) ŵ = 0.13 mm1
α = 90.204 (13)°T = 173 K
β = 104.336 (12)°Block, colourless
γ = 107.774 (12)°0.40 × 0.25 × 0.10 mm
V = 778.7 (2) Å3
Data collection top
Stoe IPDS II two-circle
diffractometer
1647 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.169
Graphite monochromatorθmax = 25.6°, θmin = 3.6°
ω scansh = 99
8171 measured reflectionsk = 1010
2911 independent reflectionsl = 1616
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.199H atoms treated by a mixture of independent and constrained refinement
S = 0.94 w = 1/[σ2(Fo2) + (0.0992P)2]
where P = (Fo2 + 2Fc2)/3
2911 reflections(Δ/σ)max < 0.001
260 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = 0.31 e Å3
Crystal data top
C4H4FN3O·0.5C4H9NOγ = 107.774 (12)°
Mr = 172.67V = 778.7 (2) Å3
Triclinic, P1Z = 4
a = 7.7247 (12) ÅMo Kα radiation
b = 8.2840 (13) ŵ = 0.13 mm1
c = 13.238 (2) ÅT = 173 K
α = 90.204 (13)°0.40 × 0.25 × 0.10 mm
β = 104.336 (12)°
Data collection top
Stoe IPDS II two-circle
diffractometer
1647 reflections with I > 2σ(I)
8171 measured reflectionsRint = 0.169
2911 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0690 restraints
wR(F2) = 0.199H atoms treated by a mixture of independent and constrained refinement
S = 0.94Δρmax = 0.29 e Å3
2911 reflectionsΔρmin = 0.31 e Å3
260 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
N10.6755 (4)0.4441 (4)0.4706 (2)0.0325 (7)
H10.617 (6)0.370 (6)0.505 (4)0.056 (13)*
C20.8323 (4)0.5758 (4)0.5227 (3)0.0289 (7)
N30.9256 (4)0.6894 (4)0.4629 (2)0.0318 (7)
C40.8722 (4)0.6688 (4)0.3592 (3)0.0302 (7)
C50.7115 (4)0.5274 (5)0.3070 (3)0.0342 (8)
C60.6156 (5)0.4204 (4)0.3648 (3)0.0367 (8)
H60.50660.32860.33170.044*
O210.8860 (3)0.5886 (3)0.61967 (19)0.0373 (6)
N410.9677 (4)0.7820 (4)0.3044 (3)0.0393 (8)
H41A1.065 (6)0.871 (6)0.348 (4)0.053 (12)*
H41B0.944 (6)0.752 (6)0.236 (4)0.057 (13)*
F510.6585 (3)0.5103 (3)0.20080 (17)0.0507 (6)
N1'0.2381 (4)0.0518 (4)0.5760 (2)0.0344 (7)
H1'0.126 (7)0.152 (7)0.530 (4)0.067 (14)*
C2'0.3343 (4)0.0753 (4)0.5237 (3)0.0312 (8)
N3'0.4837 (4)0.2039 (4)0.5831 (2)0.0315 (7)
C4'0.5436 (4)0.2019 (4)0.6861 (3)0.0322 (8)
C5'0.4465 (5)0.0634 (5)0.7372 (3)0.0356 (8)
C6'0.2937 (5)0.0575 (5)0.6810 (3)0.0379 (9)
H6'0.22480.14660.71440.046*
O21'0.2856 (3)0.0705 (3)0.42708 (19)0.0386 (6)
N41'0.6917 (4)0.3294 (4)0.7417 (3)0.0389 (8)
H41C0.737 (6)0.400 (6)0.697 (4)0.060 (13)*
H41D0.745 (5)0.320 (5)0.807 (3)0.036 (10)*
F51'0.5092 (3)0.0644 (3)0.84358 (17)0.0502 (6)
C1D1.2784 (6)0.2097 (7)1.0031 (4)0.0585 (12)
H1DA1.32510.18471.07520.088*0.657 (19)
H1DB1.37000.31070.98700.088*0.657 (19)
H1DC1.26070.11250.95480.088*0.657 (19)
H1DD1.37850.17421.04890.088*0.343 (19)
H1DE1.33270.32320.98160.088*0.343 (19)
H1DF1.21740.12860.94100.088*0.343 (19)
C2D1.0927 (10)0.2425 (7)0.9911 (6)0.036 (2)0.657 (19)
O21D0.9921 (4)0.2783 (4)0.9091 (2)0.0559 (8)
N3D1.0404 (11)0.2394 (7)1.0790 (6)0.039 (2)0.657 (19)
C4D0.8578 (6)0.2796 (6)1.0730 (4)0.0590 (12)
H4DA0.83260.27391.14210.088*0.657 (19)
H4DB0.75330.19641.02270.088*0.657 (19)
H4DC0.87030.39411.05030.088*0.657 (19)
H4DD0.90620.25301.14450.088*0.343 (19)
H4DE0.73040.20121.04330.088*0.343 (19)
H4DF0.85410.39681.07420.088*0.343 (19)
C5D1.1362 (7)0.1816 (7)1.1763 (3)0.0614 (13)
H5DA1.07420.19031.23140.092*0.657 (19)
H5DB1.26840.25311.19840.092*0.657 (19)
H5DC1.12970.06301.16360.092*0.657 (19)
H5DD1.24820.14831.20680.092*0.343 (19)
H5DE1.02320.08961.17990.092*0.343 (19)
H5DF1.14300.28501.21540.092*0.343 (19)
C2D'0.9825 (19)0.2610 (13)1.0080 (11)0.033 (4)0.343 (19)
N3D'1.128 (2)0.2150 (15)1.0640 (10)0.041 (4)0.343 (19)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0272 (13)0.0271 (15)0.0416 (17)0.0046 (11)0.0109 (12)0.0108 (13)
C20.0236 (15)0.0214 (16)0.0420 (19)0.0058 (12)0.0107 (13)0.0088 (14)
N30.0242 (13)0.0301 (15)0.0406 (17)0.0047 (11)0.0123 (11)0.0081 (13)
C40.0266 (16)0.0265 (17)0.0388 (19)0.0078 (13)0.0118 (14)0.0057 (15)
C50.0264 (16)0.0357 (19)0.0370 (19)0.0053 (14)0.0076 (14)0.0005 (15)
C60.0262 (16)0.0303 (18)0.051 (2)0.0064 (14)0.0091 (15)0.0034 (16)
O210.0382 (13)0.0316 (13)0.0393 (14)0.0054 (10)0.0124 (11)0.0097 (11)
N410.0355 (16)0.0408 (19)0.0380 (18)0.0038 (14)0.0133 (14)0.0101 (15)
F510.0453 (12)0.0554 (15)0.0419 (13)0.0020 (10)0.0117 (10)0.0019 (11)
N1'0.0325 (15)0.0247 (15)0.0420 (17)0.0003 (12)0.0141 (13)0.0060 (13)
C2'0.0304 (16)0.0239 (17)0.043 (2)0.0104 (13)0.0146 (14)0.0128 (14)
N3'0.0237 (13)0.0245 (14)0.0432 (17)0.0030 (11)0.0087 (11)0.0094 (12)
C4'0.0236 (16)0.0285 (17)0.048 (2)0.0095 (13)0.0147 (14)0.0123 (15)
C5'0.0300 (17)0.0358 (19)0.043 (2)0.0092 (15)0.0138 (15)0.0146 (16)
C6'0.0360 (18)0.034 (2)0.047 (2)0.0087 (15)0.0203 (16)0.0137 (16)
O21'0.0371 (13)0.0326 (13)0.0413 (15)0.0039 (10)0.0104 (11)0.0080 (11)
N41'0.0259 (14)0.0381 (18)0.0445 (19)0.0021 (12)0.0049 (13)0.0114 (15)
F51'0.0438 (12)0.0551 (14)0.0406 (12)0.0007 (10)0.0097 (9)0.0145 (11)
C1D0.039 (2)0.066 (3)0.071 (3)0.018 (2)0.013 (2)0.003 (2)
C2D0.038 (4)0.036 (3)0.028 (4)0.003 (2)0.006 (3)0.001 (2)
O21D0.0513 (16)0.070 (2)0.0404 (16)0.0116 (14)0.0099 (13)0.0199 (14)
N3D0.042 (4)0.045 (3)0.027 (4)0.009 (3)0.009 (3)0.006 (2)
C4D0.062 (3)0.054 (3)0.072 (3)0.016 (2)0.041 (2)0.010 (2)
C5D0.074 (3)0.069 (3)0.033 (2)0.017 (2)0.006 (2)0.013 (2)
C2D'0.028 (7)0.030 (6)0.036 (8)0.001 (4)0.011 (6)0.007 (5)
N3D'0.040 (7)0.049 (6)0.034 (8)0.012 (5)0.011 (5)0.002 (5)
Geometric parameters (Å, º) top
N1—C61.356 (5)C1D—N3D'1.584 (17)
N1—C21.381 (4)C1D—H1DA0.9800
N1—H10.85 (5)C1D—H1DB0.9800
C2—O211.240 (4)C1D—H1DC0.9800
C2—N31.381 (4)C1D—H1DD0.9800
N3—C41.326 (4)C1D—H1DE0.9800
C4—N411.340 (4)C1D—H1DF0.9800
C4—C51.439 (5)C2D—O21D1.262 (8)
C5—C61.344 (5)C2D—N3D1.322 (14)
C5—F511.357 (4)O21D—C2D'1.335 (14)
C6—H60.9500N3D—C5D1.478 (8)
N41—H41A0.94 (5)N3D—C4D1.529 (10)
N41—H41B0.90 (5)C4D—C2D'1.481 (15)
N1'—C6'1.355 (5)C4D—H4DA0.9800
N1'—C2'1.388 (4)C4D—H4DB0.9800
N1'—H1'1.06 (5)C4D—H4DC0.9800
C2'—O21'1.237 (4)C4D—H4DD0.9800
C2'—N3'1.371 (5)C4D—H4DE0.9800
N3'—C4'1.329 (5)C4D—H4DF0.9800
C4'—N41'1.344 (5)C5D—N3D'1.501 (14)
C4'—C5'1.438 (4)C5D—H5DA0.9800
C5'—C6'1.337 (5)C5D—H5DB0.9800
C5'—F51'1.370 (4)C5D—H5DC0.9800
C6'—H6'0.9500C5D—H5DD0.9800
N41'—H41C0.89 (5)C5D—H5DE0.9800
N41'—H41D0.88 (4)C5D—H5DF0.9800
C1D—C2D1.511 (9)C2D'—N3D'1.34 (3)
C6—N1—C2122.6 (3)O21D—C2D—N3D119.1 (9)
C6—N1—H1117 (3)O21D—C2D—C1D127.0 (6)
C2—N1—H1120 (3)N3D—C2D—C1D113.8 (7)
O21—C2—N1120.4 (3)C2D—N3D—C4D116.3 (7)
O21—C2—N3122.2 (3)C5D—N3D—C4D119.9 (6)
N1—C2—N3117.5 (3)C2D'—C4D—H4DA147.3
C4—N3—C2121.4 (3)N3D—C4D—H4DA109.5
N3—C4—N41119.2 (3)C2D'—C4D—H4DB88.0
N3—C4—C5119.8 (3)N3D—C4D—H4DB109.5
N41—C4—C5120.9 (3)H4DA—C4D—H4DB109.5
C6—C5—F51122.3 (3)C2D'—C4D—H4DC89.0
C6—C5—C4119.0 (3)N3D—C4D—H4DC109.5
F51—C5—C4118.7 (3)H4DA—C4D—H4DC109.5
C5—C6—N1119.5 (3)H4DB—C4D—H4DC109.5
C5—C6—H6120.2C2D'—C4D—H4DD109.5
N1—C6—H6120.2N3D—C4D—H4DD71.6
C4—N41—H41A112 (3)H4DB—C4D—H4DD121.6
C4—N41—H41B116 (3)H4DC—C4D—H4DD125.4
H41A—N41—H41B130 (4)C2D'—C4D—H4DE109.5
C6'—N1'—C2'122.5 (3)N3D—C4D—H4DE125.4
C6'—N1'—H1'120 (3)H4DA—C4D—H4DE89.1
C2'—N1'—H1'117 (3)H4DC—C4D—H4DE111.5
O21'—C2'—N3'122.2 (3)H4DD—C4D—H4DE109.5
O21'—C2'—N1'120.5 (3)C2D'—C4D—H4DF109.5
N3'—C2'—N1'117.4 (3)N3D—C4D—H4DF121.7
C4'—N3'—C2'121.8 (3)H4DA—C4D—H4DF87.9
N3'—C4'—N41'120.1 (3)H4DB—C4D—H4DF116.1
N3'—C4'—C5'119.2 (3)H4DD—C4D—H4DF109.5
N41'—C4'—C5'120.6 (3)H4DE—C4D—H4DF109.5
C6'—C5'—F51'122.0 (3)N3D—C5D—H5DA109.5
C6'—C5'—C4'119.6 (3)N3D'—C5D—H5DA141.6
F51'—C5'—C4'118.4 (3)N3D—C5D—H5DB109.5
C5'—C6'—N1'119.4 (3)N3D'—C5D—H5DB91.2
C5'—C6'—H6'120.3H5DA—C5D—H5DB109.5
N1'—C6'—H6'120.3N3D—C5D—H5DC109.5
C4'—N41'—H41C108 (3)N3D'—C5D—H5DC92.4
C4'—N41'—H41D120 (3)H5DA—C5D—H5DC109.5
H41C—N41'—H41D129 (4)H5DB—C5D—H5DC109.5
C2D—C1D—H1DA109.5N3D—C5D—H5DD141.5
N3D'—C1D—H1DA72.5N3D'—C5D—H5DD109.5
C2D—C1D—H1DB109.5H5DA—C5D—H5DD108.6
N3D'—C1D—H1DB124.4H5DB—C5D—H5DD51.2
H1DA—C1D—H1DB109.5H5DC—C5D—H5DD61.6
C2D—C1D—H1DC109.5N3D—C5D—H5DE93.9
N3D'—C1D—H1DC122.3N3D'—C5D—H5DE109.5
H1DA—C1D—H1DC109.5H5DA—C5D—H5DE60.6
H1DB—C1D—H1DC109.5H5DB—C5D—H5DE156.7
C2D—C1D—H1DD146.4H5DC—C5D—H5DE60.4
N3D'—C1D—H1DD109.5H5DD—C5D—H5DE109.5
H1DB—C1D—H1DD91.8N3D—C5D—H5DF89.8
H1DC—C1D—H1DD86.1N3D'—C5D—H5DF109.5
C2D—C1D—H1DE90.3H5DA—C5D—H5DF52.2
N3D'—C1D—H1DE109.5H5DB—C5D—H5DF71.8
H1DA—C1D—H1DE119.3H5DC—C5D—H5DF158.1
H1DC—C1D—H1DE116.7H5DD—C5D—H5DF109.5
H1DD—C1D—H1DE109.5H5DE—C5D—H5DF109.5
C2D—C1D—H1DF87.7O21D—C2D'—N3D'110.8 (14)
N3D'—C1D—H1DF109.5O21D—C2D'—C4D137.8 (12)
H1DA—C1D—H1DF127.5N3D'—C2D'—C4D111.4 (13)
H1DB—C1D—H1DF110.4C2D'—N3D'—C5D118.6 (16)
H1DD—C1D—H1DF109.5C2D'—N3D'—C1D114.5 (12)
H1DE—C1D—H1DF109.5C5D—N3D'—C1D126.8 (12)
C6—N1—C2—O21177.2 (3)C2'—N1'—C6'—C5'0.2 (5)
C6—N1—C2—N32.2 (5)N3D'—C1D—C2D—O21D178.1 (10)
O21—C2—N3—C4176.4 (3)N3D'—C1D—C2D—N3D5.1 (8)
N1—C2—N3—C43.0 (5)N3D—C2D—O21D—C2D'1.3 (7)
C2—N3—C4—N41179.7 (3)C1D—C2D—O21D—C2D'177.9 (10)
C2—N3—C4—C51.3 (5)O21D—C2D—N3D—C5D173.3 (5)
N3—C4—C5—C61.4 (5)C1D—C2D—N3D—C5D9.7 (8)
N41—C4—C5—C6177.6 (3)O21D—C2D—N3D—C4D0.3 (7)
N3—C4—C5—F51179.3 (3)C1D—C2D—N3D—C4D177.3 (5)
N41—C4—C5—F510.3 (5)C2D—N3D—C4D—C2D'1.0 (7)
F51—C5—C6—N1180.0 (3)C5D—N3D—C4D—C2D'172.2 (9)
C4—C5—C6—N12.2 (5)C2D—N3D—C5D—N3D'1.3 (8)
C2—N1—C6—C50.4 (5)C4D—N3D—C5D—N3D'174.0 (12)
C6'—N1'—C2'—O21'175.7 (3)C2D—O21D—C2D'—N3D'2.1 (6)
C6'—N1'—C2'—N3'4.2 (5)C2D—O21D—C2D'—C4D177.4 (15)
O21'—C2'—N3'—C4'175.1 (3)N3D—C4D—C2D'—O21D177.0 (16)
N1'—C2'—N3'—C4'4.8 (5)N3D—C4D—C2D'—N3D'2.4 (7)
C2'—N3'—C4'—N41'179.3 (3)O21D—C2D'—N3D'—C5D177.3 (8)
C2'—N3'—C4'—C5'1.6 (5)C4D—C2D'—N3D'—C5D3.1 (12)
N3'—C4'—C5'—C6'2.5 (5)O21D—C2D'—N3D'—C1D5.2 (11)
N41'—C4'—C5'—C6'176.6 (3)C4D—C2D'—N3D'—C1D174.4 (7)
N3'—C4'—C5'—F51'179.4 (3)N3D—C5D—N3D'—C2D'5.3 (6)
N41'—C4'—C5'—F51'0.3 (5)N3D—C5D—N3D'—C1D171.9 (16)
F51'—C5'—C6'—N1'179.8 (3)C2D—C1D—N3D'—C2D'2.1 (6)
C4'—C5'—C6'—N1'3.1 (5)C2D—C1D—N3D'—C5D179.4 (14)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···N30.85 (5)1.92 (5)2.772 (4)179 (5)
N41—H41A···O21i0.94 (5)2.03 (5)2.965 (4)174 (4)
N41—H41B···O21Dii0.90 (5)2.13 (5)2.976 (5)157 (4)
N1—H1···N3iii1.06 (5)1.72 (5)2.774 (4)173 (4)
N41—H41C···O210.89 (5)2.08 (5)2.955 (4)168 (4)
N41—H41D···O21D0.88 (4)2.17 (4)2.922 (4)143 (3)
Symmetry codes: (i) x+1, y+1, z; (ii) x+2, y+1, z+1; (iii) x1, y1, z.
(III) 5-fluorocytosine hemihydrate top
Crystal data top
C4H4FN3O·0.5H2OF(000) = 1136
Mr = 138.11Dx = 1.609 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 2945 reflections
a = 14.7039 (13) Åθ = 3.4–25.8°
b = 12.4546 (10) ŵ = 0.15 mm1
c = 13.7921 (14) ÅT = 173 K
β = 115.474 (7)°Block, colourless
V = 2280.2 (4) Å30.30 × 0.30 × 0.20 mm
Z = 16
Data collection top
Stoe IPDS II two-circle
diffractometer
1631 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.104
Graphite monochromatorθmax = 25.7°, θmin = 3.4°
ω scansh = 1717
14246 measured reflectionsk = 1515
2141 independent reflectionsl = 1616
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078H atoms treated by a mixture of independent and constrained refinement
S = 0.88 w = 1/[σ2(Fo2) + (0.0397P)2]
where P = (Fo2 + 2Fc2)/3
2141 reflections(Δ/σ)max < 0.001
355 parametersΔρmax = 0.19 e Å3
8 restraintsΔρmin = 0.32 e Å3
Crystal data top
C4H4FN3O·0.5H2OV = 2280.2 (4) Å3
Mr = 138.11Z = 16
Monoclinic, CcMo Kα radiation
a = 14.7039 (13) ŵ = 0.15 mm1
b = 12.4546 (10) ÅT = 173 K
c = 13.7921 (14) Å0.30 × 0.30 × 0.20 mm
β = 115.474 (7)°
Data collection top
Stoe IPDS II two-circle
diffractometer
1631 reflections with I > 2σ(I)
14246 measured reflectionsRint = 0.104
2141 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0388 restraints
wR(F2) = 0.078H atoms treated by a mixture of independent and constrained refinement
S = 0.88Δρmax = 0.19 e Å3
2141 reflectionsΔρmin = 0.32 e Å3
355 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A0.7211 (3)0.6651 (3)0.5596 (3)0.0215 (8)
H1A0.74180.73150.56020.026*
C2A0.6239 (3)0.6470 (3)0.5445 (3)0.0204 (10)
N3A0.5915 (3)0.5442 (3)0.5449 (3)0.0204 (8)
C4A0.6545 (3)0.4629 (4)0.5575 (3)0.0193 (10)
C5A0.7542 (3)0.4821 (4)0.5719 (4)0.0232 (10)
C6A0.7862 (3)0.5826 (4)0.5737 (3)0.0245 (10)
H6A0.85350.59630.58470.029*
O21A0.5662 (2)0.7255 (2)0.5311 (3)0.0263 (8)
N41A0.6204 (3)0.3632 (3)0.5544 (3)0.0262 (9)
H41A0.55780.35240.54420.031*
H41B0.66050.30810.56250.031*
F51A0.8156 (2)0.3962 (2)0.5869 (2)0.0375 (7)
N1B0.3981 (3)0.5036 (3)0.5387 (3)0.0202 (8)
H1B0.45720.51480.53890.024*
C2B0.3681 (3)0.4000 (3)0.5427 (3)0.0179 (9)
N3B0.2762 (3)0.3810 (3)0.5405 (3)0.0185 (8)
C4B0.2158 (3)0.4628 (4)0.5338 (3)0.0199 (10)
C5B0.2488 (3)0.5692 (4)0.5322 (3)0.0216 (10)
C6B0.3397 (3)0.5890 (4)0.5344 (3)0.0210 (10)
H6B0.36190.66040.53300.025*
O21B0.4265 (2)0.3249 (2)0.5486 (3)0.0258 (7)
N41B0.1242 (3)0.4449 (3)0.5280 (3)0.0249 (9)
H41C0.10360.37870.52860.030*
H41D0.08440.49930.52350.030*
F51B0.1859 (2)0.6524 (2)0.5265 (2)0.0332 (7)
N1C0.6303 (3)0.3450 (3)0.7936 (3)0.0227 (9)
H1C0.61100.41050.79950.027*
C2C0.7256 (3)0.3297 (3)0.8011 (3)0.0190 (9)
N3C0.7559 (3)0.2280 (3)0.7933 (3)0.0195 (8)
C4C0.6945 (3)0.1450 (4)0.7797 (3)0.0188 (9)
C5C0.5955 (3)0.1631 (4)0.7710 (4)0.0254 (11)
C6C0.5644 (3)0.2621 (4)0.7771 (3)0.0231 (10)
H6C0.49820.27490.77030.028*
O21C0.7820 (2)0.4093 (2)0.8153 (2)0.0271 (7)
N41C0.7259 (3)0.0468 (3)0.7751 (3)0.0252 (9)
H41E0.78720.03630.78100.030*
H41F0.68550.00820.76610.030*
F51C0.5349 (2)0.0759 (2)0.7559 (2)0.0350 (7)
N1D0.9455 (3)0.1854 (3)0.7892 (3)0.0206 (8)
H1D0.88640.19700.78900.025*
C2D0.9780 (3)0.0815 (3)0.7928 (3)0.0199 (10)
N3D1.0713 (3)0.0633 (3)0.7972 (3)0.0196 (8)
C4D1.1291 (3)0.1473 (4)0.7975 (3)0.0189 (9)
C5D1.0911 (3)0.2535 (4)0.7884 (4)0.0249 (11)
C6D1.0015 (3)0.2710 (4)0.7860 (4)0.0247 (10)
H6D0.97670.34210.78200.030*
O21D0.9219 (2)0.0058 (3)0.7924 (3)0.0259 (7)
N41D1.2219 (3)0.1290 (3)0.8066 (3)0.0233 (9)
H41G1.24450.06270.81220.028*
H41H1.26050.18310.80690.028*
F51D1.1519 (2)0.3343 (2)0.7862 (2)0.0371 (7)
O1W0.9690 (2)0.3874 (3)0.9907 (3)0.0337 (8)
H1WA0.970 (4)0.324 (2)1.018 (3)0.040*
H1WB0.918 (3)0.390 (4)0.924 (2)0.040*
O2W0.3804 (2)0.7076 (3)0.3471 (3)0.0314 (8)
H2WA0.433 (3)0.712 (4)0.412 (2)0.038*
H2WB0.387 (4)0.648 (3)0.317 (3)0.038*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0149 (18)0.018 (2)0.032 (2)0.0035 (15)0.0105 (16)0.0006 (17)
C2A0.019 (2)0.019 (2)0.023 (2)0.0039 (19)0.0092 (19)0.0016 (19)
N3A0.0187 (19)0.017 (2)0.027 (2)0.0036 (16)0.0114 (17)0.0038 (16)
C4A0.022 (2)0.020 (2)0.019 (2)0.0003 (19)0.011 (2)0.0022 (18)
C5A0.017 (2)0.021 (3)0.031 (3)0.006 (2)0.010 (2)0.003 (2)
C6A0.017 (2)0.029 (3)0.030 (3)0.0021 (19)0.012 (2)0.005 (2)
O21A0.0189 (17)0.0152 (16)0.046 (2)0.0016 (13)0.0151 (15)0.0007 (14)
N41A0.028 (2)0.0150 (19)0.042 (2)0.0027 (17)0.0205 (19)0.0016 (17)
F51A0.0302 (15)0.0250 (15)0.062 (2)0.0115 (12)0.0248 (14)0.0090 (14)
N1B0.0164 (18)0.017 (2)0.028 (2)0.0034 (15)0.0109 (16)0.0037 (16)
C2B0.016 (2)0.015 (2)0.021 (2)0.0020 (18)0.0071 (18)0.0021 (17)
N3B0.018 (2)0.014 (2)0.024 (2)0.0011 (17)0.0101 (16)0.0018 (16)
C4B0.022 (2)0.016 (3)0.021 (2)0.000 (2)0.0085 (19)0.0018 (18)
C5B0.021 (2)0.016 (3)0.025 (3)0.0033 (18)0.008 (2)0.0010 (18)
C6B0.022 (2)0.015 (2)0.028 (3)0.0031 (19)0.013 (2)0.0036 (19)
O21B0.0222 (16)0.0145 (16)0.0389 (18)0.0009 (13)0.0114 (14)0.0001 (14)
N41B0.024 (2)0.012 (2)0.042 (2)0.0026 (17)0.0165 (18)0.0054 (17)
F51B0.0325 (15)0.0156 (13)0.058 (2)0.0069 (11)0.0255 (14)0.0017 (12)
N1C0.021 (2)0.022 (2)0.028 (2)0.0054 (17)0.0133 (16)0.0026 (17)
C2C0.017 (2)0.018 (2)0.023 (2)0.0030 (18)0.0100 (18)0.0011 (19)
N3C0.019 (2)0.011 (2)0.030 (2)0.0007 (16)0.0121 (17)0.0015 (15)
C4C0.019 (2)0.019 (2)0.019 (2)0.0014 (18)0.0083 (19)0.0002 (18)
C5C0.025 (3)0.027 (3)0.028 (3)0.007 (2)0.016 (2)0.002 (2)
C6C0.018 (2)0.027 (3)0.024 (3)0.002 (2)0.009 (2)0.0001 (19)
O21C0.0246 (17)0.0159 (16)0.041 (2)0.0015 (14)0.0140 (15)0.0004 (14)
N41C0.0202 (19)0.017 (2)0.040 (2)0.0055 (17)0.0147 (18)0.0025 (18)
F51C0.0255 (14)0.0275 (15)0.0546 (18)0.0085 (12)0.0198 (13)0.0004 (13)
N1D0.0188 (19)0.0140 (19)0.034 (2)0.0009 (14)0.0161 (16)0.0032 (16)
C2D0.021 (2)0.020 (3)0.017 (2)0.0011 (19)0.0067 (19)0.0001 (18)
N3D0.0191 (19)0.0159 (19)0.025 (2)0.0015 (16)0.0110 (16)0.0009 (16)
C4D0.022 (2)0.019 (2)0.017 (2)0.0003 (18)0.0098 (18)0.0007 (17)
C5D0.027 (3)0.011 (2)0.040 (3)0.004 (2)0.018 (2)0.0009 (19)
C6D0.027 (2)0.014 (2)0.033 (3)0.0029 (18)0.012 (2)0.0010 (19)
O21D0.0245 (17)0.0183 (17)0.0394 (18)0.0029 (14)0.0179 (15)0.0017 (13)
N41D0.0158 (19)0.018 (2)0.038 (2)0.0022 (16)0.0136 (17)0.0021 (17)
F51D0.0313 (16)0.0180 (15)0.070 (2)0.0032 (12)0.0290 (15)0.0025 (14)
O1W0.0221 (16)0.0291 (19)0.047 (2)0.0027 (14)0.0117 (15)0.0040 (16)
O2W0.0240 (16)0.0294 (19)0.043 (2)0.0009 (14)0.0163 (15)0.0056 (15)
Geometric parameters (Å, º) top
N1A—C6A1.361 (6)N1C—H1C0.8800
N1A—C2A1.371 (5)C2C—O21C1.252 (5)
N1A—H1A0.8800C2C—N3C1.362 (5)
C2A—O21A1.256 (5)N3C—C4C1.331 (5)
C2A—N3A1.366 (5)C4C—N41C1.318 (6)
N3A—C4A1.332 (5)C4C—C5C1.427 (6)
C4A—N41A1.333 (6)C5C—C6C1.330 (7)
C4A—C5A1.413 (6)C5C—F51C1.362 (5)
C5A—C6A1.334 (7)C6C—H6C0.9500
C5A—F51A1.357 (5)N41C—H41E0.8800
C6A—H6A0.9500N41C—H41F0.8800
N41A—H41A0.8800N1D—C6D1.360 (6)
N41A—H41B0.8800N1D—C2D1.373 (6)
N1B—C6B1.353 (6)N1D—H1D0.8800
N1B—C2B1.372 (5)C2D—O21D1.251 (5)
N1B—H1B0.8800C2D—N3D1.366 (6)
C2B—O21B1.249 (5)N3D—C4D1.347 (6)
C2B—N3B1.359 (5)C4D—N41D1.335 (5)
N3B—C4B1.328 (6)C4D—C5D1.421 (6)
C4B—N41B1.333 (5)C5D—C6D1.321 (6)
C4B—C5B1.415 (6)C5D—F51D1.355 (5)
C5B—C6B1.346 (6)C6D—H6D0.9500
C5B—F51B1.369 (5)N41D—H41G0.8800
C6B—H6B0.9500N41D—H41H0.8800
N41B—H41C0.8800O1W—H1WA0.87 (2)
N41B—H41D0.8800O1W—H1WB0.90 (2)
N1C—C6C1.366 (6)O2W—H2WA0.90 (2)
N1C—C2C1.373 (5)O2W—H2WB0.88 (2)
C6A—N1A—C2A121.4 (4)C6C—N1C—H1C118.8
C6A—N1A—H1A119.3C2C—N1C—H1C118.8
C2A—N1A—H1A119.3O21C—C2C—N3C122.1 (4)
O21A—C2A—N3A121.0 (4)O21C—C2C—N1C119.2 (4)
O21A—C2A—N1A119.2 (4)N3C—C2C—N1C118.7 (4)
N3A—C2A—N1A119.8 (4)C4C—N3C—C2C120.5 (4)
C4A—N3A—C2A119.2 (4)N41C—C4C—N3C119.8 (4)
N3A—C4A—N41A118.3 (4)N41C—C4C—C5C120.5 (4)
N3A—C4A—C5A120.7 (4)N3C—C4C—C5C119.7 (4)
N41A—C4A—C5A121.0 (4)C6C—C5C—F51C121.9 (4)
C6A—C5A—F51A122.1 (4)C6C—C5C—C4C120.4 (4)
C6A—C5A—C4A119.8 (4)F51C—C5C—C4C117.6 (4)
F51A—C5A—C4A118.1 (4)C5C—C6C—N1C118.2 (4)
C5A—C6A—N1A119.1 (4)C5C—C6C—H6C120.9
C5A—C6A—H6A120.5N1C—C6C—H6C120.9
N1A—C6A—H6A120.5C4C—N41C—H41E120.0
C4A—N41A—H41A120.0C4C—N41C—H41F120.0
C4A—N41A—H41B120.0H41E—N41C—H41F120.0
H41A—N41A—H41B120.0C6D—N1D—C2D122.3 (4)
C6B—N1B—C2B122.2 (4)C6D—N1D—H1D118.9
C6B—N1B—H1B118.9C2D—N1D—H1D118.9
C2B—N1B—H1B118.9O21D—C2D—N3D121.5 (4)
O21B—C2B—N3B121.3 (4)O21D—C2D—N1D119.5 (4)
O21B—C2B—N1B118.9 (4)N3D—C2D—N1D119.0 (4)
N3B—C2B—N1B119.8 (4)C4D—N3D—C2D119.5 (4)
C4B—N3B—C2B119.7 (4)N41D—C4D—N3D119.1 (4)
N3B—C4B—N41B120.3 (4)N41D—C4D—C5D121.0 (4)
N3B—C4B—C5B119.7 (4)N3D—C4D—C5D119.9 (4)
N41B—C4B—C5B120.0 (4)C6D—C5D—F51D122.5 (4)
C6B—C5B—F51B120.2 (4)C6D—C5D—C4D120.4 (4)
C6B—C5B—C4B121.0 (4)F51D—C5D—C4D117.1 (4)
F51B—C5B—C4B118.8 (4)C5D—C6D—N1D118.8 (4)
C5B—C6B—N1B117.5 (4)C5D—C6D—H6D120.6
C5B—C6B—H6B121.3N1D—C6D—H6D120.6
N1B—C6B—H6B121.3C4D—N41D—H41G120.0
C4B—N41B—H41C120.0C4D—N41D—H41H120.0
C4B—N41B—H41D120.0H41G—N41D—H41H120.0
H41C—N41B—H41D120.0H1WA—O1W—H1WB109 (4)
C6C—N1C—C2C122.4 (4)H2WA—O2W—H2WB107 (3)
C6A—N1A—C2A—O21A179.5 (4)C6C—N1C—C2C—O21C179.4 (4)
C6A—N1A—C2A—N3A0.8 (6)C6C—N1C—C2C—N3C0.9 (6)
O21A—C2A—N3A—C4A178.8 (4)O21C—C2C—N3C—C4C179.1 (4)
N1A—C2A—N3A—C4A1.6 (6)N1C—C2C—N3C—C4C0.7 (6)
C2A—N3A—C4A—N41A178.0 (4)C2C—N3C—C4C—N41C178.2 (4)
C2A—N3A—C4A—C5A0.9 (6)C2C—N3C—C4C—C5C1.4 (6)
N3A—C4A—C5A—C6A0.5 (7)N41C—C4C—C5C—C6C179.1 (4)
N41A—C4A—C5A—C6A179.4 (4)N3C—C4C—C5C—C6C0.5 (6)
N3A—C4A—C5A—F51A178.4 (4)N41C—C4C—C5C—F51C1.2 (6)
N41A—C4A—C5A—F51A2.7 (6)N3C—C4C—C5C—F51C179.2 (4)
F51A—C5A—C6A—N1A179.1 (4)F51C—C5C—C6C—N1C179.3 (4)
C4A—C5A—C6A—N1A1.2 (7)C4C—C5C—C6C—N1C1.0 (7)
C2A—N1A—C6A—C5A0.6 (6)C2C—N1C—C6C—C5C1.7 (6)
C6B—N1B—C2B—O21B178.7 (4)C6D—N1D—C2D—O21D177.8 (4)
C6B—N1B—C2B—N3B1.2 (6)C6D—N1D—C2D—N3D2.4 (6)
O21B—C2B—N3B—C4B179.7 (4)O21D—C2D—N3D—C4D180.0 (4)
N1B—C2B—N3B—C4B0.4 (6)N1D—C2D—N3D—C4D0.2 (6)
C2B—N3B—C4B—N41B177.8 (4)C2D—N3D—C4D—N41D177.1 (4)
C2B—N3B—C4B—C5B1.9 (6)C2D—N3D—C4D—C5D2.9 (6)
N3B—C4B—C5B—C6B1.9 (7)N41D—C4D—C5D—C6D175.9 (4)
N41B—C4B—C5B—C6B177.8 (4)N3D—C4D—C5D—C6D4.0 (7)
N3B—C4B—C5B—F51B179.2 (4)N41D—C4D—C5D—F51D1.8 (6)
N41B—C4B—C5B—F51B1.1 (6)N3D—C4D—C5D—F51D178.2 (4)
F51B—C5B—C6B—N1B179.2 (4)F51D—C5D—C6D—N1D179.5 (4)
C4B—C5B—C6B—N1B0.3 (6)C4D—C5D—C6D—N1D1.9 (7)
C2B—N1B—C6B—C5B1.2 (6)C2D—N1D—C6D—C5D1.3 (7)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···N3Bi0.881.982.853 (5)172
N41A—H41A···O21B0.881.992.858 (5)170
N1B—H1B···N3A0.881.972.854 (5)177
N41B—H41C···O21Aii0.881.992.869 (5)176
N41B—H41D···O1Wiii0.882.102.972 (5)170
N1C—H1C···N3Div0.881.992.861 (5)173
N41C—H41E···O21D0.881.952.834 (5)177
N1D—H1D···N3C0.881.982.862 (5)178
N41D—H41G···O21Cv0.881.982.862 (5)175
N41D—H41H···O2Wvi0.882.102.961 (5)164
O1W—H1WA···O21Bvii0.87 (2)2.06 (3)2.906 (5)163 (4)
O1W—H1WB···O21C0.90 (2)1.93 (3)2.786 (5)158 (5)
O2W—H2WA···O21A0.90 (2)1.95 (2)2.826 (5)166 (5)
O2W—H2WB···O21Dviii0.88 (2)2.05 (3)2.898 (5)163 (4)
Symmetry codes: (i) x+1/2, y+1/2, z; (ii) x1/2, y1/2, z; (iii) x1, y+1, z1/2; (iv) x1/2, y+1/2, z; (v) x+1/2, y1/2, z; (vi) x+1, y+1, z+1/2; (vii) x+1/2, y+1/2, z+1/2; (viii) x1/2, y+1/2, z1/2.

Experimental details

(I)(II)(III)
Crystal data
Chemical formulaC4H4FN3O·C2H6OSC4H4FN3O·0.5C4H9NOC4H4FN3O·0.5H2O
Mr207.23172.67138.11
Crystal system, space groupMonoclinic, P21/cTriclinic, P1Monoclinic, Cc
Temperature (K)173173173
a, b, c (Å)12.4467 (12), 9.1849 (8), 8.5635 (8)7.7247 (12), 8.2840 (13), 13.238 (2)14.7039 (13), 12.4546 (10), 13.7921 (14)
α, β, γ (°)90, 107.065 (8), 9090.204 (13), 104.336 (12), 107.774 (12)90, 115.474 (7), 90
V3)935.89 (15)778.7 (2)2280.2 (4)
Z4416
Radiation typeMo KαMo KαMo Kα
µ (mm1)0.330.130.15
Crystal size (mm)0.31 × 0.14 × 0.050.40 × 0.25 × 0.100.30 × 0.30 × 0.20
Data collection
DiffractometerStoe IPDS II two-circle
diffractometer
Stoe IPDS II two-circle
diffractometer
Stoe IPDS II two-circle
diffractometer
Absorption correctionMulti-scan
[MULABS (Spek, 2009; Blessing, 1995)]
Tmin, Tmax0.903, 0.984
No. of measured, independent and
observed [I > 2σ(I)] reflections
8061, 1904, 1509 8171, 2911, 1647 14246, 2141, 1631
Rint0.0490.1690.104
(sin θ/λ)max1)0.6250.6090.609
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.039, 0.100, 1.03 0.069, 0.199, 0.94 0.038, 0.078, 0.88
No. of reflections190429112141
No. of parameters132260355
No. of restraints008
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.26, 0.270.29, 0.310.19, 0.32

Computer programs: X-AREA (Stoe & Cie, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Version 2.2; Macrae et al., 2008) and XP (Sheldrick, 2008), publCIF (Westrip, 2009).

Hydrogen-bond geometry (Å, º) for (I) top
D—H···AD—HH···AD···AD—H···A
N41—H411···O1M0.82 (3)2.18 (3)2.929 (2)152 (2)
N41—H412···O21i0.91 (3)2.05 (3)2.959 (2)174 (2)
N1—H1···N3ii0.88 (3)1.88 (3)2.762 (2)179 (2)
Symmetry codes: (i) x+1, y+1/2, z+1/2; (ii) x+1, y1/2, z+1/2.
Hydrogen-bond geometry (Å, º) for (II) top
D—H···AD—HH···AD···AD—H···A
N1—H1···N3'0.85 (5)1.92 (5)2.772 (4)179 (5)
N41—H41A···O21'i0.94 (5)2.03 (5)2.965 (4)174 (4)
N41—H41B···O21Dii0.90 (5)2.13 (5)2.976 (5)157 (4)
N1'—H1'···N3iii1.06 (5)1.72 (5)2.774 (4)173 (4)
N41'—H41C···O210.89 (5)2.08 (5)2.955 (4)168 (4)
N41'—H41D···O21D0.88 (4)2.17 (4)2.922 (4)143 (3)
Symmetry codes: (i) x+1, y+1, z; (ii) x+2, y+1, z+1; (iii) x1, y1, z.
Hydrogen-bond geometry (Å, º) for (III) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···N3Bi0.881.982.853 (5)172
N41A—H41A···O21B0.881.992.858 (5)170
N1B—H1B···N3A0.881.972.854 (5)177
N41B—H41C···O21Aii0.881.992.869 (5)176
N41B—H41D···O1Wiii0.882.102.972 (5)170
N1C—H1C···N3Div0.881.992.861 (5)173
N41C—H41E···O21D0.881.952.834 (5)177
N1D—H1D···N3C0.881.982.862 (5)178
N41D—H41G···O21Cv0.881.982.862 (5)175
N41D—H41H···O2Wvi0.882.102.961 (5)164
O1W—H1WA···O21Bvii0.87 (2)2.06 (3)2.906 (5)163 (4)
O1W—H1WB···O21C0.90 (2)1.93 (3)2.786 (5)158 (5)
O2W—H2WA···O21A0.90 (2)1.95 (2)2.826 (5)166 (5)
O2W—H2WB···O21Dviii0.88 (2)2.05 (3)2.898 (5)163 (4)
Symmetry codes: (i) x+1/2, y+1/2, z; (ii) x1/2, y1/2, z; (iii) x1, y+1, z1/2; (iv) x1/2, y+1/2, z; (v) x+1/2, y1/2, z; (vi) x+1, y+1, z+1/2; (vii) x+1/2, y+1/2, z+1/2; (viii) x1/2, y+1/2, z1/2.
 

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