Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270108040584/sk3280sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270108040584/sk3280Isup2.hkl |
CCDC reference: 718123
Benzaldehyde (69.0 µl, 0.68 mmol) was dissolved in tetrahydrofuran (1 ml) and added to a solution of the glycyl sultam (2) (Davis et al., 1988; Oppolzer et al., 1989; Hoppe & Beckmann, 1979) (185 mg, 0.68 mmol) in tetrahydrofuran (1 ml) (see second reaction scheme). Diethyl maleate (329 µl, 2.04 mmol) was added to the reaction solution, followed by silver acetate (5.70 mg, 34.0 µmol). After being stirred under argon in the dark for 3 h, the reaction mixture was diluted with dichloromethane (100 ml) and washed with saturated ammonium chloride solution (50 ml). The organic layer was dried over magnesium sulfate and the solvent was removed under reduced pressure. The residue was purified by flash column chromatography (silica gel, ethyl acetate–petroleum spirit 3:7, then 4:6 and 1:1) to give the product, (I) (182 mg, 50%), as a pale-yellow solid. Analysis: Rf = 0.18 (ethyl acetate–petroleum spirit 3:7); [α]22 = -39.9 (c = 1.5, CHCl3); HRMS (ES+): calculated for C27H36N2O723NaS (MNa+): 555.2141; found: 555.2127; microanalysis requires: C 60.88, H 6.81, N 5.26%; found: C 60.57, H 6.99, N 5.17%. For details of 1H and 13C NMR data, see the archived CIF. The crystallization solvent was ethanol.
A total of 11 reflections within 2θ = 50° were omitted either as outliers or because they were partially screened by the backstop. The H atom on N1 was located and refined with an isotropic displacement parameter. Water H atoms were located and refined with Uiso(H) = 1.2Ueq(O). All C-bound H atoms were constrained to their expected geometries, with C—H = 0.98, 0.99 or 1.00 Å. Methyl H atoms were refined with Uiso(H) = 1.5Ueq(C); all other H atoms were refined with Uiso(H) = 1.2Ueq(C).
Data collection: SMART (Bruker, 2006); cell refinement: SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006) and SADABS (Bruker, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2003) and Mercury (Macrae et al., 2006).
C27H36N2O7S | F(000) = 568 |
Mr = 532.64 | Dx = 1.298 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 9945 reflections |
a = 13.7194 (9) Å | θ = 2.4–31.1° |
b = 6.9464 (4) Å | µ = 0.17 mm−1 |
c = 14.9703 (9) Å | T = 122 K |
β = 107.148 (2)° | Plate, colourless |
V = 1363.25 (14) Å3 | 0.45 × 0.24 × 0.06 mm |
Z = 2 |
Bruker Nonius APEX2 CCD area-detector diffractometer | 9045 independent reflections |
Radiation source: fine-focus sealed tube | 6778 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.058 |
Detector resolution: 8.192 pixels mm-1 | θmax = 32.6°, θmin = 2.8° |
ϕ and ω scans | h = −20→20 |
Absorption correction: multi-scan (Blessing, 1995) | k = −10→9 |
Tmin = 0.665, Tmax = 1.0 | l = −22→22 |
28357 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.152 | w = 1/[σ2(Fo2) + (0.0797P)2 + 0.153P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.001 |
8865 reflections | Δρmax = 0.44 e Å−3 |
342 parameters | Δρmin = −0.23 e Å−3 |
1 restraint | Absolute structure: Flack (1983), with how many Friedel pairs? |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.00 (7) |
C27H36N2O7S | V = 1363.25 (14) Å3 |
Mr = 532.64 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 13.7194 (9) Å | µ = 0.17 mm−1 |
b = 6.9464 (4) Å | T = 122 K |
c = 14.9703 (9) Å | 0.45 × 0.24 × 0.06 mm |
β = 107.148 (2)° |
Bruker Nonius APEX2 CCD area-detector diffractometer | 9045 independent reflections |
Absorption correction: multi-scan (Blessing, 1995) | 6778 reflections with I > 2σ(I) |
Tmin = 0.665, Tmax = 1.0 | Rint = 0.058 |
28357 measured reflections |
R[F2 > 2σ(F2)] = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.152 | Δρmax = 0.44 e Å−3 |
S = 1.03 | Δρmin = −0.23 e Å−3 |
8865 reflections | Absolute structure: Flack (1983), with how many Friedel pairs? |
342 parameters | Absolute structure parameter: 0.00 (7) |
1 restraint |
Experimental. (I) 1H NMR (500 MHz, CDCl3, δ, p.p.m.): 7.36–7.21 (series of m 5H, Ph), 4.54 (dd, 10.9, 9.3 Hz, 1H, H-2), 4.43 (dd, 12.8, 7.2 Hz, 1H, H-5), 4.06–3.95 (m, 4H), 3.74 (dd, 9.0, 7.2 Hz, 1H, H-4), 3.69–3.56 (m, 3H), 3.48 (s, 2H, CH2SO2), 2.51–2.44 (m, 1H), 2.10 (dd, 13.8, 8.0 Hz, 1H), 1.96–1.82 (m, 3H), 1.48–1.35 (m, 2H), 1.16 (t, 7.2 Hz, 3H, CH3), 1.14 (s, 3H, CH3), 0.96 (s, 3H, CH3), 0.77 (t, 7.1 Hz, 3H, CH3); 13C NMR (125 MHz, CDCl3, δ, p.p.m.): 170.47, 169.77, 167.63, 136.87, 128.03 (2 C), 127.35, 126.79 (2 C), 65.65, 64.54, 62.29, 60.79, 60.28, 54.21, 53.01, 52.10, 48.41, 47.73, 44.53, 37.20, 32.89, 26.55, 20.10, 20.08, 13.90, 13.49; FT–IR (KBr, ν, cm-1): 2959, 1751, 1462, 1394, 1336, 1195, 1134, 1061, 998, 972, 841, 809, 762, 539. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.07934 (4) | 0.93952 (9) | 0.61405 (4) | 0.03675 (14) | |
O1 | 0.27730 (15) | 0.6868 (3) | 0.80728 (12) | 0.0458 (4) | |
O2 | 0.32184 (14) | 1.1253 (3) | 0.82909 (12) | 0.0428 (4) | |
O3 | 0.30407 (13) | 1.2927 (2) | 0.95095 (12) | 0.0389 (4) | |
O4 | 0.34070 (12) | 0.8740 (3) | 1.02648 (12) | 0.0389 (4) | |
O5 | 0.29460 (13) | 1.0339 (3) | 1.13736 (11) | 0.0393 (4) | |
O6 | 0.06336 (18) | 1.1328 (3) | 0.63870 (14) | 0.0574 (6) | |
O7 | 0.00084 (16) | 0.8042 (4) | 0.61412 (14) | 0.0614 (6) | |
N1 | 0.13186 (17) | 0.7295 (3) | 0.89631 (13) | 0.0329 (4) | |
H1 | 0.189 (3) | 0.681 (5) | 0.918 (2) | 0.048 (9)* | |
N2 | 0.19230 (14) | 0.8616 (3) | 0.68200 (11) | 0.0288 (4) | |
C1 | 0.21041 (18) | 0.7993 (3) | 0.77461 (14) | 0.0310 (4) | |
C2 | 0.14185 (17) | 0.8782 (3) | 0.82942 (14) | 0.0296 (4) | |
H2 | 0.0728 | 0.9013 | 0.7845 | 0.036* | |
C3 | 0.17717 (16) | 1.0691 (3) | 0.88665 (14) | 0.0269 (4) | |
H3 | 0.1224 | 1.1668 | 0.8617 | 0.032* | |
C4 | 0.17594 (16) | 1.0197 (3) | 0.98665 (13) | 0.0256 (4) | |
H4 | 0.1449 | 1.1269 | 1.0137 | 0.031* | |
C5 | 0.10625 (16) | 0.8380 (3) | 0.96977 (14) | 0.0283 (4) | |
H5 | 0.0341 | 0.8829 | 0.9439 | 0.034* | |
C6 | 0.27688 (16) | 1.1600 (3) | 0.88365 (14) | 0.0288 (4) | |
C7 | 0.4022 (2) | 1.3896 (4) | 0.96583 (19) | 0.0451 (6) | |
H7A | 0.4420 | 1.3255 | 0.9288 | 0.054* | |
H7B | 0.3912 | 1.5255 | 0.9454 | 0.054* | |
C8 | 0.4580 (3) | 1.3807 (6) | 1.0653 (2) | 0.0659 (9) | |
H8A | 0.4153 | 1.4325 | 1.1018 | 0.099* | |
H8B | 0.5206 | 1.4570 | 1.0775 | 0.099* | |
H8C | 0.4755 | 1.2465 | 1.0834 | 0.099* | |
C9 | 0.27969 (16) | 0.9680 (3) | 1.05071 (14) | 0.0284 (4) | |
C10 | 0.3908 (2) | 0.9865 (5) | 1.20564 (18) | 0.0521 (7) | |
H10A | 0.4061 | 1.0825 | 1.2568 | 0.063* | |
H10B | 0.4462 | 0.9914 | 1.1757 | 0.063* | |
C11 | 0.3868 (3) | 0.7894 (5) | 1.2453 (2) | 0.0631 (9) | |
H11A | 0.3256 | 0.7782 | 1.2661 | 0.095* | |
H11B | 0.4476 | 0.7688 | 1.2985 | 0.095* | |
H11C | 0.3844 | 0.6925 | 1.1971 | 0.095* | |
C12 | 0.11312 (16) | 0.7253 (3) | 1.05784 (14) | 0.0288 (4) | |
C13 | 0.07141 (18) | 0.8063 (4) | 1.12370 (16) | 0.0353 (5) | |
H13 | 0.0372 | 0.9266 | 1.1109 | 0.042* | |
C14 | 0.07933 (19) | 0.7134 (4) | 1.20752 (16) | 0.0407 (5) | |
H14 | 0.0516 | 0.7714 | 1.2521 | 0.049* | |
C15 | 0.1273 (2) | 0.5371 (4) | 1.22632 (17) | 0.0442 (6) | |
H15 | 0.1319 | 0.4723 | 1.2833 | 0.053* | |
C16 | 0.1686 (2) | 0.4557 (4) | 1.16146 (17) | 0.0420 (5) | |
H16 | 0.2024 | 0.3350 | 1.1745 | 0.050* | |
C17 | 0.16150 (18) | 0.5476 (3) | 1.07775 (16) | 0.0339 (4) | |
H17 | 0.1898 | 0.4891 | 1.0337 | 0.041* | |
C18 | 0.25698 (19) | 0.7786 (3) | 0.62864 (15) | 0.0330 (5) | |
H18 | 0.2465 | 0.6361 | 0.6227 | 0.040* | |
C19 | 0.22260 (19) | 0.8740 (3) | 0.53016 (14) | 0.0331 (4) | |
C20 | 0.2568 (3) | 0.7300 (4) | 0.46702 (18) | 0.0474 (6) | |
H20A | 0.2332 | 0.5979 | 0.4745 | 0.057* | |
H20B | 0.2313 | 0.7678 | 0.4004 | 0.057* | |
C21 | 0.3735 (3) | 0.7452 (5) | 0.5038 (2) | 0.0553 (8) | |
H21A | 0.4028 | 0.7788 | 0.4527 | 0.066* | |
H21B | 0.4039 | 0.6225 | 0.5325 | 0.066* | |
C22 | 0.3927 (2) | 0.9071 (4) | 0.57729 (18) | 0.0464 (6) | |
H22 | 0.4604 | 0.9723 | 0.5896 | 0.056* | |
C23 | 0.3707 (2) | 0.8242 (4) | 0.66523 (17) | 0.0439 (6) | |
H23A | 0.4114 | 0.7067 | 0.6877 | 0.053* | |
H23B | 0.3849 | 0.9202 | 0.7164 | 0.053* | |
C24 | 0.1098 (2) | 0.9219 (4) | 0.50592 (15) | 0.0424 (5) | |
H24A | 0.0686 | 0.8195 | 0.4662 | 0.051* | |
H24B | 0.0953 | 1.0453 | 0.4715 | 0.051* | |
C25 | 0.2996 (2) | 1.0404 (4) | 0.53731 (17) | 0.0402 (5) | |
C26 | 0.2916 (3) | 1.2079 (4) | 0.6028 (2) | 0.0493 (6) | |
H26A | 0.3466 | 1.3005 | 0.6065 | 0.074* | |
H26B | 0.2977 | 1.1573 | 0.6653 | 0.074* | |
H26C | 0.2255 | 1.2721 | 0.5780 | 0.074* | |
C27 | 0.2942 (3) | 1.1318 (5) | 0.4423 (2) | 0.0570 (8) | |
H27A | 0.3054 | 1.0324 | 0.4000 | 0.085* | |
H27B | 0.3469 | 1.2312 | 0.4512 | 0.085* | |
H27C | 0.2268 | 1.1900 | 0.4154 | 0.085* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0335 (3) | 0.0493 (3) | 0.0219 (2) | 0.0030 (2) | −0.00038 (19) | −0.0008 (2) |
O1 | 0.0576 (11) | 0.0513 (11) | 0.0298 (8) | 0.0208 (9) | 0.0148 (8) | 0.0116 (7) |
O2 | 0.0387 (9) | 0.0587 (11) | 0.0321 (9) | −0.0084 (8) | 0.0123 (7) | −0.0094 (8) |
O3 | 0.0399 (9) | 0.0390 (8) | 0.0397 (9) | −0.0113 (7) | 0.0147 (7) | −0.0092 (7) |
O4 | 0.0324 (8) | 0.0502 (9) | 0.0324 (8) | 0.0079 (7) | 0.0073 (7) | 0.0024 (7) |
O5 | 0.0381 (9) | 0.0517 (10) | 0.0233 (7) | −0.0024 (8) | 0.0015 (6) | −0.0035 (7) |
O6 | 0.0689 (14) | 0.0600 (12) | 0.0390 (10) | 0.0336 (11) | 0.0093 (9) | 0.0066 (9) |
O7 | 0.0476 (12) | 0.0956 (17) | 0.0357 (10) | −0.0251 (12) | 0.0041 (9) | −0.0101 (11) |
N1 | 0.0423 (11) | 0.0323 (9) | 0.0238 (9) | −0.0077 (8) | 0.0090 (8) | −0.0048 (7) |
N2 | 0.0339 (9) | 0.0312 (8) | 0.0186 (7) | 0.0026 (7) | 0.0036 (7) | −0.0012 (6) |
C1 | 0.0402 (12) | 0.0295 (9) | 0.0214 (9) | 0.0019 (8) | 0.0061 (8) | −0.0002 (7) |
C2 | 0.0311 (10) | 0.0350 (10) | 0.0206 (9) | −0.0024 (8) | 0.0043 (7) | −0.0009 (7) |
C3 | 0.0267 (9) | 0.0293 (9) | 0.0217 (9) | 0.0035 (7) | 0.0024 (7) | 0.0012 (7) |
C4 | 0.0279 (10) | 0.0271 (9) | 0.0215 (9) | 0.0001 (7) | 0.0066 (7) | −0.0014 (7) |
C5 | 0.0267 (9) | 0.0332 (10) | 0.0229 (9) | −0.0039 (8) | 0.0040 (8) | −0.0015 (7) |
C6 | 0.0289 (10) | 0.0301 (9) | 0.0236 (9) | 0.0027 (8) | 0.0017 (8) | 0.0030 (7) |
C7 | 0.0450 (14) | 0.0446 (13) | 0.0429 (13) | −0.0180 (11) | 0.0087 (11) | 0.0017 (10) |
C8 | 0.0480 (16) | 0.094 (3) | 0.0508 (17) | −0.0240 (17) | 0.0065 (13) | −0.0020 (17) |
C9 | 0.0291 (9) | 0.0300 (10) | 0.0243 (9) | −0.0045 (8) | 0.0053 (7) | 0.0021 (7) |
C10 | 0.0424 (14) | 0.078 (2) | 0.0260 (11) | −0.0135 (13) | −0.0060 (10) | −0.0020 (12) |
C11 | 0.0610 (19) | 0.083 (2) | 0.0365 (14) | 0.0044 (17) | 0.0013 (13) | 0.0145 (15) |
C12 | 0.0260 (10) | 0.0361 (10) | 0.0236 (9) | −0.0067 (8) | 0.0064 (7) | −0.0021 (8) |
C13 | 0.0332 (11) | 0.0409 (12) | 0.0323 (11) | −0.0023 (9) | 0.0103 (9) | −0.0055 (9) |
C14 | 0.0373 (12) | 0.0594 (15) | 0.0270 (11) | −0.0105 (11) | 0.0117 (9) | −0.0062 (10) |
C15 | 0.0454 (14) | 0.0553 (15) | 0.0287 (11) | −0.0122 (12) | 0.0060 (10) | 0.0060 (10) |
C16 | 0.0467 (13) | 0.0380 (12) | 0.0368 (12) | −0.0044 (11) | 0.0054 (10) | 0.0062 (10) |
C17 | 0.0378 (12) | 0.0334 (10) | 0.0316 (11) | −0.0043 (9) | 0.0121 (9) | −0.0016 (8) |
C18 | 0.0484 (13) | 0.0281 (10) | 0.0224 (9) | 0.0082 (9) | 0.0106 (9) | 0.0012 (7) |
C19 | 0.0464 (13) | 0.0314 (10) | 0.0199 (9) | 0.0031 (9) | 0.0072 (9) | −0.0002 (8) |
C20 | 0.077 (2) | 0.0407 (12) | 0.0268 (11) | 0.0047 (13) | 0.0191 (12) | −0.0043 (10) |
C21 | 0.075 (2) | 0.0593 (17) | 0.0380 (14) | 0.0201 (15) | 0.0274 (14) | −0.0004 (12) |
C22 | 0.0480 (14) | 0.0584 (16) | 0.0362 (12) | 0.0027 (12) | 0.0177 (11) | −0.0019 (11) |
C23 | 0.0435 (14) | 0.0586 (16) | 0.0290 (11) | 0.0149 (12) | 0.0097 (10) | 0.0015 (10) |
C24 | 0.0494 (14) | 0.0534 (14) | 0.0190 (9) | 0.0022 (12) | 0.0019 (9) | 0.0021 (10) |
C25 | 0.0544 (15) | 0.0362 (11) | 0.0314 (11) | −0.0027 (11) | 0.0147 (10) | −0.0010 (9) |
C26 | 0.0735 (19) | 0.0310 (12) | 0.0479 (15) | −0.0098 (12) | 0.0247 (14) | −0.0064 (10) |
C27 | 0.086 (2) | 0.0484 (15) | 0.0421 (15) | −0.0019 (15) | 0.0283 (15) | 0.0123 (12) |
S1—O6 | 1.426 (2) | C12—C17 | 1.391 (3) |
S1—O7 | 1.430 (2) | C12—C13 | 1.396 (3) |
S1—N2 | 1.6733 (18) | C13—C14 | 1.386 (3) |
S1—C24 | 1.791 (2) | C13—H13 | 0.9500 |
O1—C1 | 1.195 (3) | C14—C15 | 1.380 (4) |
O2—C6 | 1.184 (3) | C14—H14 | 0.9500 |
O3—C6 | 1.335 (3) | C15—C16 | 1.382 (4) |
O3—C7 | 1.463 (3) | C15—H15 | 0.9500 |
O4—C9 | 1.199 (3) | C16—C17 | 1.384 (3) |
O5—C9 | 1.333 (3) | C16—H16 | 0.9500 |
O5—C10 | 1.449 (3) | C17—H17 | 0.9500 |
N1—C5 | 1.459 (3) | C18—C23 | 1.527 (4) |
N1—C2 | 1.473 (3) | C18—C19 | 1.557 (3) |
N1—H1 | 0.82 (3) | C18—H18 | 1.0000 |
N2—C1 | 1.403 (3) | C19—C24 | 1.519 (4) |
N2—C18 | 1.475 (3) | C19—C20 | 1.542 (3) |
C1—C2 | 1.521 (3) | C19—C25 | 1.548 (4) |
C2—C3 | 1.575 (3) | C20—C21 | 1.536 (5) |
C2—H2 | 1.0000 | C20—H20A | 0.9900 |
C3—C6 | 1.519 (3) | C20—H20B | 0.9900 |
C3—C4 | 1.541 (3) | C21—C22 | 1.541 (4) |
C3—H3 | 1.0000 | C21—H21A | 0.9900 |
C4—C9 | 1.507 (3) | C21—H21B | 0.9900 |
C4—C5 | 1.558 (3) | C22—C23 | 1.546 (4) |
C4—H4 | 1.0000 | C22—C25 | 1.548 (4) |
C5—C12 | 1.512 (3) | C22—H22 | 1.0000 |
C5—H5 | 1.0000 | C23—H23A | 0.9900 |
C7—C8 | 1.462 (4) | C23—H23B | 0.9900 |
C7—H7A | 0.9900 | C24—H24A | 0.9900 |
C7—H7B | 0.9900 | C24—H24B | 0.9900 |
C8—H8A | 0.9800 | C25—C27 | 1.539 (4) |
C8—H8B | 0.9800 | C25—C26 | 1.546 (4) |
C8—H8C | 0.9800 | C26—H26A | 0.9800 |
C10—C11 | 1.499 (5) | C26—H26B | 0.9800 |
C10—H10A | 0.9900 | C26—H26C | 0.9800 |
C10—H10B | 0.9900 | C27—H27A | 0.9800 |
C11—H11A | 0.9800 | C27—H27B | 0.9800 |
C11—H11B | 0.9800 | C27—H27C | 0.9800 |
C11—H11C | 0.9800 | ||
O6—S1—O7 | 116.45 (15) | C14—C13—H13 | 119.6 |
O6—S1—N2 | 109.42 (11) | C12—C13—H13 | 119.6 |
O7—S1—N2 | 110.47 (12) | C15—C14—C13 | 120.2 (2) |
O6—S1—C24 | 113.12 (14) | C15—C14—H14 | 119.9 |
O7—S1—C24 | 109.39 (13) | C13—C14—H14 | 119.9 |
N2—S1—C24 | 96.11 (10) | C14—C15—C16 | 119.3 (2) |
C6—O3—C7 | 118.20 (19) | C14—C15—H15 | 120.3 |
C9—O5—C10 | 117.0 (2) | C16—C15—H15 | 120.3 |
C5—N1—C2 | 103.95 (18) | C15—C16—C17 | 120.9 (3) |
C5—N1—H1 | 109 (2) | C15—C16—H16 | 119.6 |
C2—N1—H1 | 107 (2) | C17—C16—H16 | 119.6 |
C1—N2—C18 | 117.06 (17) | C16—C17—C12 | 120.4 (2) |
C1—N2—S1 | 124.26 (16) | C16—C17—H17 | 119.8 |
C18—N2—S1 | 113.23 (13) | C12—C17—H17 | 119.8 |
O1—C1—N2 | 119.8 (2) | N2—C18—C23 | 116.02 (19) |
O1—C1—C2 | 122.5 (2) | N2—C18—C19 | 106.46 (17) |
N2—C1—C2 | 117.67 (19) | C23—C18—C19 | 104.09 (19) |
N1—C2—C1 | 108.06 (18) | N2—C18—H18 | 110.0 |
N1—C2—C3 | 107.22 (16) | C23—C18—H18 | 110.0 |
C1—C2—C3 | 117.18 (18) | C19—C18—H18 | 110.0 |
N1—C2—H2 | 108.0 | C24—C19—C20 | 117.9 (2) |
C1—C2—H2 | 108.0 | C24—C19—C25 | 118.7 (2) |
C3—C2—H2 | 108.0 | C20—C19—C25 | 101.7 (2) |
C6—C3—C4 | 112.90 (16) | C24—C19—C18 | 108.80 (19) |
C6—C3—C2 | 117.97 (18) | C20—C19—C18 | 104.01 (18) |
C4—C3—C2 | 104.56 (16) | C25—C19—C18 | 104.03 (18) |
C6—C3—H3 | 106.9 | C21—C20—C19 | 102.1 (2) |
C4—C3—H3 | 106.9 | C21—C20—H20A | 111.4 |
C2—C3—H3 | 106.9 | C19—C20—H20A | 111.4 |
C9—C4—C3 | 113.12 (17) | C21—C20—H20B | 111.4 |
C9—C4—C5 | 109.23 (17) | C19—C20—H20B | 111.4 |
C3—C4—C5 | 101.81 (15) | H20A—C20—H20B | 109.2 |
C9—C4—H4 | 110.8 | C20—C21—C22 | 104.3 (2) |
C3—C4—H4 | 110.8 | C20—C21—H21A | 110.9 |
C5—C4—H4 | 110.8 | C22—C21—H21A | 110.9 |
N1—C5—C12 | 114.99 (18) | C20—C21—H21B | 110.9 |
N1—C5—C4 | 105.55 (17) | C22—C21—H21B | 110.9 |
C12—C5—C4 | 113.61 (16) | H21A—C21—H21B | 108.9 |
N1—C5—H5 | 107.4 | C21—C22—C23 | 107.6 (2) |
C12—C5—H5 | 107.4 | C21—C22—C25 | 102.3 (2) |
C4—C5—H5 | 107.4 | C23—C22—C25 | 101.9 (2) |
O2—C6—O3 | 125.1 (2) | C21—C22—H22 | 114.6 |
O2—C6—C3 | 126.3 (2) | C23—C22—H22 | 114.6 |
O3—C6—C3 | 108.57 (18) | C25—C22—H22 | 114.6 |
C8—C7—O3 | 108.5 (2) | C18—C23—C22 | 102.0 (2) |
C8—C7—H7A | 110.0 | C18—C23—H23A | 111.4 |
O3—C7—H7A | 110.0 | C22—C23—H23A | 111.4 |
C8—C7—H7B | 110.0 | C18—C23—H23B | 111.4 |
O3—C7—H7B | 110.0 | C22—C23—H23B | 111.4 |
H7A—C7—H7B | 108.4 | H23A—C23—H23B | 109.2 |
C7—C8—H8A | 109.5 | C19—C24—S1 | 106.96 (14) |
C7—C8—H8B | 109.5 | C19—C24—H24A | 110.3 |
H8A—C8—H8B | 109.5 | S1—C24—H24A | 110.3 |
C7—C8—H8C | 109.5 | C19—C24—H24B | 110.3 |
H8A—C8—H8C | 109.5 | S1—C24—H24B | 110.3 |
H8B—C8—H8C | 109.5 | H24A—C24—H24B | 108.6 |
O4—C9—O5 | 124.1 (2) | C27—C25—C26 | 106.4 (2) |
O4—C9—C4 | 123.37 (19) | C27—C25—C19 | 113.5 (2) |
O5—C9—C4 | 112.49 (18) | C26—C25—C19 | 115.6 (2) |
O5—C10—C11 | 110.8 (2) | C27—C25—C22 | 114.4 (2) |
O5—C10—H10A | 109.5 | C26—C25—C22 | 114.2 (2) |
C11—C10—H10A | 109.5 | C19—C25—C22 | 92.78 (19) |
O5—C10—H10B | 109.5 | C25—C26—H26A | 109.5 |
C11—C10—H10B | 109.5 | C25—C26—H26B | 109.5 |
H10A—C10—H10B | 108.1 | H26A—C26—H26B | 109.5 |
C10—C11—H11A | 109.5 | C25—C26—H26C | 109.5 |
C10—C11—H11B | 109.5 | H26A—C26—H26C | 109.5 |
H11A—C11—H11B | 109.5 | H26B—C26—H26C | 109.5 |
C10—C11—H11C | 109.5 | C25—C27—H27A | 109.5 |
H11A—C11—H11C | 109.5 | C25—C27—H27B | 109.5 |
H11B—C11—H11C | 109.5 | H27A—C27—H27B | 109.5 |
C17—C12—C13 | 118.4 (2) | C25—C27—H27C | 109.5 |
C17—C12—C5 | 123.32 (19) | H27A—C27—H27C | 109.5 |
C13—C12—C5 | 118.3 (2) | H27B—C27—H27C | 109.5 |
C14—C13—C12 | 120.8 (2) | ||
O6—S1—N2—C1 | 78.4 (2) | C5—C12—C13—C14 | −177.2 (2) |
O7—S1—N2—C1 | −51.1 (2) | C12—C13—C14—C15 | −1.1 (4) |
C24—S1—N2—C1 | −164.42 (19) | C13—C14—C15—C16 | 1.0 (4) |
O6—S1—N2—C18 | −128.53 (17) | C14—C15—C16—C17 | −0.7 (4) |
O7—S1—N2—C18 | 101.99 (18) | C15—C16—C17—C12 | 0.6 (4) |
C24—S1—N2—C18 | −11.37 (18) | C13—C12—C17—C16 | −0.7 (3) |
C18—N2—C1—O1 | 1.5 (3) | C5—C12—C17—C16 | 177.4 (2) |
S1—N2—C1—O1 | 153.6 (2) | C1—N2—C18—C23 | −63.7 (3) |
C18—N2—C1—C2 | −177.87 (19) | S1—N2—C18—C23 | 141.17 (18) |
S1—N2—C1—C2 | −25.7 (3) | C1—N2—C18—C19 | −178.96 (18) |
C5—N1—C2—C1 | 155.96 (18) | S1—N2—C18—C19 | 25.9 (2) |
C5—N1—C2—C3 | 28.8 (2) | N2—C18—C19—C24 | −30.7 (3) |
O1—C1—C2—N1 | −30.7 (3) | C23—C18—C19—C24 | −153.7 (2) |
N2—C1—C2—N1 | 148.7 (2) | N2—C18—C19—C20 | −157.2 (2) |
O1—C1—C2—C3 | 90.5 (3) | C23—C18—C19—C20 | 79.7 (2) |
N2—C1—C2—C3 | −90.2 (2) | N2—C18—C19—C25 | 96.7 (2) |
N1—C2—C3—C6 | 121.3 (2) | C23—C18—C19—C25 | −26.4 (2) |
C1—C2—C3—C6 | −0.3 (3) | C24—C19—C20—C21 | 171.3 (2) |
N1—C2—C3—C4 | −5.1 (2) | C25—C19—C20—C21 | 39.7 (2) |
C1—C2—C3—C4 | −126.71 (19) | C18—C19—C20—C21 | −68.2 (2) |
C6—C3—C4—C9 | −31.2 (2) | C19—C20—C21—C22 | −4.6 (3) |
C2—C3—C4—C9 | 98.27 (19) | C20—C21—C22—C23 | 75.0 (3) |
C6—C3—C4—C5 | −148.27 (17) | C20—C21—C22—C25 | −31.9 (3) |
C2—C3—C4—C5 | −18.8 (2) | N2—C18—C23—C22 | −126.6 (2) |
C2—N1—C5—C12 | −167.74 (18) | C19—C18—C23—C22 | −10.0 (2) |
C2—N1—C5—C4 | −41.7 (2) | C21—C22—C23—C18 | −63.8 (3) |
C9—C4—C5—N1 | −82.2 (2) | C25—C22—C23—C18 | 43.3 (3) |
C3—C4—C5—N1 | 37.7 (2) | C20—C19—C24—S1 | 140.92 (19) |
C9—C4—C5—C12 | 44.7 (2) | C25—C19—C24—S1 | −95.7 (2) |
C3—C4—C5—C12 | 164.57 (17) | C18—C19—C24—S1 | 22.9 (2) |
C7—O3—C6—O2 | −6.9 (3) | O6—S1—C24—C19 | 106.7 (2) |
C7—O3—C6—C3 | 175.54 (19) | O7—S1—C24—C19 | −121.7 (2) |
C4—C3—C6—O2 | 138.0 (2) | N2—S1—C24—C19 | −7.44 (19) |
C2—C3—C6—O2 | 15.8 (3) | C24—C19—C25—C27 | −70.4 (3) |
C4—C3—C6—O3 | −44.5 (2) | C20—C19—C25—C27 | 60.8 (3) |
C2—C3—C6—O3 | −166.73 (17) | C18—C19—C25—C27 | 168.6 (2) |
C6—O3—C7—C8 | −129.9 (3) | C24—C19—C25—C26 | 52.9 (3) |
C10—O5—C9—O4 | −0.4 (3) | C20—C19—C25—C26 | −176.0 (2) |
C10—O5—C9—C4 | 177.9 (2) | C18—C19—C25—C26 | −68.1 (3) |
C3—C4—C9—O4 | −38.9 (3) | C24—C19—C25—C22 | 171.42 (19) |
C5—C4—C9—O4 | 73.7 (3) | C20—C19—C25—C22 | −57.4 (2) |
C3—C4—C9—O5 | 142.72 (18) | C18—C19—C25—C22 | 50.4 (2) |
C5—C4—C9—O5 | −104.7 (2) | C21—C22—C25—C27 | −63.4 (3) |
C9—O5—C10—C11 | −82.9 (3) | C23—C22—C25—C27 | −174.6 (2) |
N1—C5—C12—C17 | 14.1 (3) | C21—C22—C25—C26 | 173.7 (2) |
C4—C5—C12—C17 | −107.7 (2) | C23—C22—C25—C26 | 62.5 (3) |
N1—C5—C12—C13 | −167.9 (2) | C21—C22—C25—C19 | 54.0 (2) |
C4—C5—C12—C13 | 70.4 (2) | C23—C22—C25—C19 | −57.2 (2) |
C17—C12—C13—C14 | 0.9 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H7B···O1i | 0.99 | 2.46 | 3.230 (3) | 134 |
C8—H8B···O2ii | 0.98 | 2.49 | 3.420 (4) | 158 |
C16—H16···O5iii | 0.95 | 2.59 | 3.474 (3) | 155 |
C24—H24A···O6iv | 0.99 | 2.40 | 3.366 (3) | 166 |
C24—H24B···O7v | 0.99 | 2.37 | 3.313 (4) | 159 |
C5—H5···Cg1vi | 1.0 | 2.74 | 3.679 (2) | 157 |
N1—H1···O1 | 0.83 (4) | 2.32 (4) | 2.723 (3) | 110 (2) |
C7—H7A···O2 | 0.99 | 2.33 | 2.729 (3) | 103 |
C23—H23B···O2 | 0.99 | 2.55 | 3.437 (3) | 149 |
C26—H26B···O2 | 0.98 | 2.39 | 3.339 (3) | 164 |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, y+1/2, −z+2; (iii) x, y−1, z; (iv) −x, y−1/2, −z+1; (v) −x, y+1/2, −z+1; (vi) −x, y+1/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C27H36N2O7S |
Mr | 532.64 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 122 |
a, b, c (Å) | 13.7194 (9), 6.9464 (4), 14.9703 (9) |
β (°) | 107.148 (2) |
V (Å3) | 1363.25 (14) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.17 |
Crystal size (mm) | 0.45 × 0.24 × 0.06 |
Data collection | |
Diffractometer | Bruker Nonius APEX2 CCD area-detector diffractometer |
Absorption correction | Multi-scan (Blessing, 1995) |
Tmin, Tmax | 0.665, 1.0 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 28357, 9045, 6778 |
Rint | 0.058 |
(sin θ/λ)max (Å−1) | 0.758 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.152, 1.03 |
No. of reflections | 8865 |
No. of parameters | 342 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.44, −0.23 |
Absolute structure | Flack (1983), with how many Friedel pairs? |
Absolute structure parameter | 0.00 (7) |
Computer programs: SMART (Bruker, 2006), SAINT (Bruker, 2006) and SADABS (Bruker, 2006), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2006), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2003) and Mercury (Macrae et al., 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H7B···O1i | 0.99 | 2.46 | 3.230 (3) | 134 |
C8—H8B···O2ii | 0.98 | 2.49 | 3.420 (4) | 158 |
C16—H16···O5iii | 0.95 | 2.59 | 3.474 (3) | 155 |
C24—H24A···O6iv | 0.99 | 2.40 | 3.366 (3) | 166 |
C24—H24B···O7v | 0.99 | 2.37 | 3.313 (4) | 159 |
C5—H5···Cg1vi | 1.0 | 2.74 | 3.679 (2) | 157 |
N1—H1···O1 | 0.83 (4) | 2.32 (4) | 2.723 (3) | 110 (2) |
C7—H7A···O2 | 0.99 | 2.33 | 2.729 (3) | 103 |
C26—H26B···O2 | 0.98 | 2.39 | 3.339 (3) | 164 |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, y+1/2, −z+2; (iii) x, y−1, z; (iv) −x, y−1/2, −z+1; (v) −x, y+1/2, −z+1; (vi) −x, y+1/2, −z+2. |
Bonds/angles | (I) | (II) |
S1-O6 | 1.426 (2) | 1.423 (4) |
S1-N2 | 1.6733 (18) | 1.687 (3) |
O3-C6 | 1.335 (3) | 1.341 (5) |
O3-C7 | 1.463 (3) | 1.441 (5) |
N1-C2 | 1.473 (3) | 1.454 (5) |
O6-S1-O7 | 116.45 (15) | 116.4 (2) |
C1-N2-S1 | 124.26 (16) | 122.8 (3) |
N2-C1-C2-N1 | 148.7 (2) | 148.2 (3) |
O1-C1-C2-C3 | 90.5 (3) | 89.2 (5) |
S1-N2-C1-O1 | 153.6 (2) | 151.1 (4) |
C2-C3-C6-O3 | -166.8 (2) | -165.2 (3) |
C3-C6-O3-C7 | 175.5 (2) | -179.4 (3) |
C6-O3-C7-C8 | -129.8 (3) | - |
C2-C3-C6-O2 | 15.8 (3) | 17.1 (6) |
C5-C4-C9-O5 | -104.7 (2) | 69.8 (4) |
C10-O5-C9-C4 | 177.9 (2) | -177.7 (4) |
C5-C4-C9-O4 | 73.7 (3) | -107.4 (5) |
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Pyrrolidine substructures are found in many biologically active compounds, leading to a point where there is a clear need for an arsenal of `decorated' scaffolds that will enable modern combinatorial access to refined libraries of compounds for (bio)assay and drug development (Schreiber, 2000). The title compound, (I), was prepared as part of a broader research programme designed to explore preparative routes to chiral pyrrolidine scaffolds and to address specifically the potential of chiral auxiliary-assisted 1,3-dipolar cycloaddition of azomethine ylids to various dipolarophiles (see first reaction scheme).
Our work sought to capitalize upon the findings of Garner & co-workers (Garner & Kaniskan, 2005; Garner et al., 2001, 2006) and others (Padwa et al., 1985), who demonstrated that a diastereofacial bias was indeed possible utilizing a chiral auxiliary on an ylid dipole. The synthetic route to (I) employed the glycyl sultam chiral auxiliary, (2), which was prepared from enantiomerically pure (+)-camphor 10-sulfonic acid (Davis et al., 1988; Oppolzer et al., 1989; Hoppe & Beckmann, 1979). The 1,3-dipolar cycloaddition was carried out with diethyl maleate and benzaldehyde in the presence of silver acetate (see second reaction scheme) to yield the title compound, (I). This structural study was undertaken to confirm the relative conformation of the 3,4-ester groups, given that the absolute configuration was established by the stereochemistry of the starting (+)-camphor enantiomer. In this case the absolute configuration was successfully confirmed by the observed X-ray anomalous dispersion effects [4033 Bijvoet pairs, Flack x parameter 0.00 (7) (Flack, 1983); Hooft y parameter 0.00 (4) (Hooft et al., 2008)].
The asymmetric unit of (I) is shown in Fig. 1, with selected dimensions compared with the dimethyl ester analogue, (II) [Garner et al., 2001; Cambridge Structural Database (Version 5.29 with November 2007 updates; Allen, 2002) refcode MIPPOQ], in Table 2. The cell dimensions, molecular packing and alignment of (I) are closely related to those of the dimethyl analogue (Figs. 2 and 3). As the opposite enantiomer is reported for (II), all comparisons here involve using the inverted molecule [conversion (x, 1 - y, z)] for (II); atom labelling here does not match the arbitrary labelling found in the archived CIF of (II) (there were no labels given in the original paper). The two structures are isomorphous through replacement of one H atom of each of the ester dimethyl groups with a methyl group (Fig. 2). To the best of our knowledge, this is a novel case; more usual isomorphous organic crystals involve larger group `interchanges', such as Cl for CH3 in 2,2'-derivatives of 5'5'-dipropoxybenzidines (El-Shafei et al., 2004) or, more commonly, of related transition metals such as CoII/NiII (e.g. Li et al., 2007). It is possible that our literature survey has not picked up previous cases of this phenomenon, though we note there have been many studies of polymorphs of the same compound (e.g. Kálmán et al., 2004).
The definition of isomorphicity is well tested by these two structures. It is obvious that (I) and (II) have different conformations with respect to rotation about the C4—C9 bond, as shown by the dihedral angles (Table 2) and in Fig. 2. Minor `displacement' differences involving the phenyl ring (C12–C17) and the location of the N1 H atom are noted, although in the latter case the position in (II) was a calculated one rather than its refined position in (I). Indeed, the position of the N1 H atom (H1) in (I) seems to fulfil the distance criteria, but not the expected N—H···O interaction angle criteria based on normal intermolecular interactions [at 110 (2)°; see Desiraju & Steiner, 1999]. Atom H1 is also under the influence of atom O4, with an intramolecular H1···O4 distance of 2.60 (4) Å. The five- and six-membered rings in (I) and (II), as expected from the close overlap (Fig. 2), are almost identical, e.g. the N1/C2–C5 ring in (I) is in an envelope conformation, with Cremer & Pople (1975) parameters Q2 = 0.391 (2) Å and ϕ2 = 150.3 (3)°, whilst the inverted molecule of (II) has a slight twist on C5—N1, with Q2 = 0.397 (4) Å and ϕ2 = 160.8 (6)°. The S1/N2/C18/C19/C24 rings are similar, each being in a twisted C18—C19 bond conformation.
Examination of Fig. 3 shows how the a and b cell axes of (I) and (II) are similar, with a relatively minor alteration in the direction and size of the c axis, consistent with the molecular orientation and addition of the extra methyl group. The molecules are in the same relative orientation in the unit cells and details of the three-dimensional cell packing illustrate only minor differences between the two cells. The interactions are mainly of the C—H···O type (the donor O atom being either a carboxyl O atom or an O atom bound to S), with one C—H.. π interaction (Table 1). We note the differences first. The orientation of the O5—C10 bond in (II) allows a C10—H···O2 interaction which is missing in (I). Likewise, the orientation and presence of methyl C8 only in (I) sets up an interaction with O2 (entry 2, Table 1). The phenyl C16—H16···O5 interaction in (I) (entry 3, Table 1) is found in (II), but changed, with the donor atom being O4 (since the ester conformation is rotated; see Fig. 2). One final difference involves a close intramolecular interaction in (I) (entry 9, Table 2) which is missing from (II). The remaining five inter- and intramolecular interactions (Table 1, where Cg1 represents the centroid of phenyl ring C12–C17) are duplicated in both structures, under the same symmetry designations, with an average difference in H···donor distance of 0.10 (7) Å. Similar methylene C—H···O═S distances have been observed before (e.g. H···O = 2.330 Å; James et al., 2005).
In summary, the relationship between the title compound, (I), and the antipode of the previously reported compound, (II), can be described as being a novel case of `isomorphous by addition', given the subtle though distinct differences in the molecules and packing.