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The asymmetric unit of the title compound, C11H5D16N2O2·0.33H2O, is formed by three crystallographically independent piperidin-1-yloxyl mol­ecules and a mol­ecule of water. The mol­ecules are crosslinked by nine hydrogen bonds into layers parallel with the ac plane. The water mol­ecule contributes to the stability of the low-symmetry arrangement by four hydrogen bonds.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270106024814/sk3034sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270106024814/sk3034Isup2.hkl
Contains datablock I

CCDC reference: 621289

Comment top

Recent advances in electron spin resonance (ESR) technology [i.e. extension of ESR to high fields and very high frequencies (HF-ESR), development of two-dimensional Fourier transform ESR imaging with very short pulsed field gradients] bring very powerful experimental techniques to bear for the desired analysis of the nanosecond-scale dynamics of macromolecular systems (LaConte et al., 2002). The nitroxide radical 2,2,6,6-tetramethylpiperidin-1-yloxyl is a favourite spin label for site-directed mutagenesis of proteins, with the aim of following local motions in macromolecules. Intact interaction of the magnetic moment of an unpaired electron with the nuclear magnetic moment of nitrogen alone gives, in principle, a simple and sharp ESR spectrum. However, magnetic moments of hydrogen nuclei of methyl groups closely surrounding the nitroxy group invoke undesired hyperfine interactions. This effect can be suppressed by deuteration of the piperidine ring, because of thesmaller magnetic moment of the deuterium nucleus in comparison with a proton. It significantly simplifies the analysis of both fast- and slow-motion spectra. The method has broad utilization in biological (Bennati & Prisner, 2005), physicochemical (Mizuochi et al., 1997) or synthetic (Bossmann et al., 1996) studies.

The title compound, (I), belongs to this group of stable radicals and has been used in our institute as a paramagnetic tracer for electron spin resonance imaging (ESRI) for monitoring diffusion processes, with numerous practical applications such as drug delivery systems and transport across membranes. It has also contributed significantly to understanding polymer dynamics (Pilař et al., 1999).

The compound crystallizes in the centrosymmetric space group P1. Three independent molecules, A, B and C (the letters are appended to the atom labels), and one molecule of water were refined in the asymmetric unit. An overall view of the first molecule, with displacement ellipsoids and labelling scheme, is shown in Fig. 1. The main geometric features of all molecules are given in Tables 2 and 3.

The main part of the compound, the piperidine ring, adopts a chair conformation, with angles between the planes C2/C3/C5/C6 and C2/N1/C6 of 31.7 (1), 30.6 (1) and 33.4 (1)° for molecules A, B and C, respectively, and between the planes C2/C3/C5/C6 and C3/C4/C5 of 52.2 (1), 53.9 (1) and 52.5 (1)° for molecules A, B and C, respectively. This is in agreement with piperidine ring puckering observed in another structure with a methacrylamide substituent (Duskova et al., 2006) and fits well with the average geometry of piperidine rings resulting from 114 hits found in the Cambridge Structural Database (Version 5.26; Allen, 2002). The linked acetylamine chain (CH3CONH–) occupies an equatorial position with respect to the ring and is almost ideally planar in all three molecules.

In order to elucidate the influence of crystal packing on molecular conformation, the symmetrically independent molecules A, B and C were superimposed on all the non-H atoms using the program package CCP4 (Collaborative Computational Project, Number 4, 1994). The resulting r.m.s. deviations were 0.055, 0.073 and 0.071 Å for AB, AC and BC aligments of all non-H atoms, respectively. The largest deviation, the O12A···O12C distance of 0.264 Å, corresponding to about 9° deviation in the CO bond direction, is caused by different directions of hydrogen bonds formed by the carbonyl atom O12 (Fig. 2). This is in accord with different values of the C3—C4—N10—C11 torsion angle of 91.0 (2), 94.4 (2) and 99.8 (2)° for molecules A, B and C, respectively. Other differences are observed in the conformations of the methyl groups of C8, C9 and C13. The angular differences between the extreme cases of orientations of the methyl groups (Fig. 2) are ca 24.1, 9.7 and 7.7° for the methyl groups of atoms C13, C9 and C8, respectively. This is probably caused by stress induced by the hydrogen bonds. Atoms O12 and N10 of molecules A, B and C are involved in strong hydrogen bonding and the H atoms on atoms C13 and C9 of molecule C and on C8 of molecule A participate in weak intermolecular interactions. Surprisingly, only the single oxygen radical of molecule C is involved in intermolecular interactions defining the arrangement of the molecules in the crystal structure. It forms a strong hydrogen contact to a water molecule and a weak one to methyl atom C13 of molecule C. The oxygen radicals O7 of the other two molecules (A and B) do not form any hydrogen bonds in the crystal structure. This behaviour is different from that of an analogous compound, 3,3,5,5-[2H4]-4-methacrylamido-2,2,6,6-tetra([2H3]methyl)piperidin-1-yloxyl (Duskova et al., 2006), where the oxygen radical plays an essential role in the formation of a chain of molecules.

The mobilities of D atoms surrounding the nitroxyl group are significantly restricted, so that one C—D bond of each deuterated methyl group tends to orient parallel to the N—O bond (antiparallel dipoles). However, this cannot be fully satisfied, due to the puckering of the piperidine ring. Considering molecule A, the nitroxy groups is directed between two methyl groups, resulting in a C8···C14 distance of 4.679 (2) Å, compared with a distance of 3.517 (2) Å for the opposite pair of atoms, C9 and C15. Viewed in the direction of the nitroxide bond, the methyl groups form a trapezoid with an approximate mirror symmetry. In spite of this, the deuterated methyl groups are rotated so that the D atoms are divided into three groups with almost identical distances to the oxygen radical. The closest four D atoms in all three molecules have distances to the nitroxy atom O7 in the range 2.48–2.71 Å, the next four in the range 2.95–3.44 Å, and the last four methyl D atoms are at distances in the range 3.67–3.82 Å. The axial D atoms on C3 and C5 have identical distances of 3.90–3.93 Å. Irrespective of the steric hindrances imposed by the 2,2,6,6 methyl groups, the nitroxide radical forms two hydrogen bonds, to a solvent water molecule and to a methyl group of the neighboring antiparallel-oriented molecule.

Molecules A, B and C are joined via one weak and four strong hydrogen bonds, with hydrogen–acceptor distances N10A—H···O12B = 2.01 (2), N10C—H···O12A = 1.97 (2), N10B—H···O(water) = 2.06 (2), O12C···H—O(water) = 1.94 (3) and C13C—H···O12A = 2.65 Å. In this way, chains of molecules ···B···A···C···O···B··· are generated parallel to the c direction (Fig. 3). Another set of three hydrogen bonds connects these chains into layers parallel with ab. These involve hydrogen bonds C13C—H···O7C = 2.65, O(water)—H···O7C = 2.00 (3) and C9C—H···O(water) = 2.61 (2) Å (Fig. 3).

A very weak C—H···O contact of 2.57 (2) Å between molecules A and B connects two neighbouring layers, forming bilayers in the b direction. Neighbouring bilayers related by a centre of symmetry interact only via van der Waals contacts between pairs of molecules AB and BA, i.e. by weak polar interactions of atom C5B and methyl groups C14B and C15B with atom O7A, and also of methyl groups C14A and C15A with amino group N10B.

Experimental top

4-Acetamido-3,3,5,5-[2H4]-2,2,6,6-tetra([2H3]methyl)piperidine (1 g), sodium ethylenediaminetetraacetate (0.1 g) and sodium tungstate dihydrate (0.1 g) were dissolved in methanol (5 ml) and water (3 ml) with 30% hydrogen peroxide (1.7 ml). The mixture was kept at laboratory temperature for 4 d. After the methanol had evaporated, the product was recrystallized from a dichloromethane–hexane mixture (1:1).

Refinement top

Two strong reflections, 001 and 010, were omitted from the refinement because the beam stop influenced the accuracy of their measurement. The D atoms of the piperidine ring were refined as H atoms. First, all H atoms were added in their ideal geometric positions, as implemented in SHELXL97 (Sheldrick, 1997). In subsequent steps, all constraints for D atoms were released for free refinement, including their isotropic displacement parameters. The H atoms on atom C13 in all three molecules were refined as a rigid group, with Uiso(H) = 1.5Ueq(C). The positions of the H atoms of a single water molecule were clearly identified in the electron-density map and were refined freely with isotropic displacement parameters.

Computing details top

Data collection: COLLECT (Nonius, 1998) and DENZO (Otwinowski & Minor, 1997); cell refinement: COLLECT and DENZO; data reduction: COLLECT and DENZO; program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: SHELXL97 and DIAMOND.

Figures top
[Figure 1] Fig. 1. The atom-numbering scheme for molecule A. The interplanar angles characterizing the chair conformation of the piperidine ring are clarified. Displacement ellipsoids are drawn at the 50% probability level. An identical numbering scheme is applied for molecules B and C. For the purpose of this figure, the suffixes of the atom names identifying individual molecules have been omitted.
[Figure 2] Fig. 2. Overlap of A (red), B (blue) and C (yellow) molecules. Significant differences in the conformations of the methyl groups are correlated with rotation of the carbonyl group C11O12. H and D atoms of the most flexible methyl groups are drawn as spheres.
[Figure 3] Fig. 3. Part of the crystal structure of (I), showing the molecular packing. Symmetrically independent molecules are marked by capital letters and by their respective symmetry operators. Dashed lines indicate hydrogen bonds which are responsible for formation of the layer parallel to ac.
4-Acetamido-3,3,5,5-[2H4]-2,2,6,6-tetra([2H3]methyl)piperidin-1-yloxyl 0.33-hydrate top
Crystal data top
C11H5D16N2O2·0.33H2OZ = 6
Mr = 235.34F(000) = 722
TriclinicP1Dx = 1.266 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71070 Å
a = 10.6940 (3) ÅCell parameters from 36138 reflections
b = 11.7120 (3) Åθ = 1.0–27.5°
c = 16.0480 (5) ŵ = 0.08 mm1
α = 109.351 (1)°T = 150 K
β = 101.678 (1)°Irregular, red
γ = 90.325 (1)°0.2 × 0.1 × 0.1 mm
V = 1851.41 (9) Å3
Data collection top
Nonius KappaCCD area-detector
diffractometer
6918 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.055
Graphite monochromatorθmax = 27.5°, θmin = 1.9°
φ and ω scansh = 013
35956 measured reflectionsk = 1515
8420 independent reflectionsl = 2020
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.1025P)2 + 1.9749P]
where P = (Fo2 + 2Fc2)/3
8420 reflections(Δ/σ)max = 0.001
663 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = 0.28 e Å3
Crystal data top
C11H5D16N2O2·0.33H2Oγ = 90.325 (1)°
Mr = 235.34V = 1851.41 (9) Å3
TriclinicP1Z = 6
a = 10.6940 (3) ÅMo Kα radiation
b = 11.7120 (3) ŵ = 0.08 mm1
c = 16.0480 (5) ÅT = 150 K
α = 109.351 (1)°0.2 × 0.1 × 0.1 mm
β = 101.678 (1)°
Data collection top
Nonius KappaCCD area-detector
diffractometer
6918 reflections with I > 2σ(I)
35956 measured reflectionsRint = 0.055
8420 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0480 restraints
wR(F2) = 0.140H atoms treated by a mixture of independent and constrained refinement
S = 1.05Δρmax = 0.29 e Å3
8420 reflectionsΔρmin = 0.28 e Å3
663 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A0.14768 (11)0.19819 (11)0.11928 (8)0.0217 (3)
C2A0.10408 (13)0.31362 (13)0.13216 (10)0.0223 (3)
C3A0.02115 (14)0.34365 (13)0.10016 (11)0.0227 (3)
H1A0.0028 (16)0.3762 (15)0.0342 (12)0.020 (4)*
H2A0.0545 (17)0.4107 (16)0.1206 (12)0.026 (4)*
C4A0.12033 (14)0.23576 (13)0.13106 (10)0.0211 (3)
H3A0.1490 (16)0.2046 (15)0.2005 (11)0.019 (4)*
C5A0.06178 (14)0.13905 (14)0.09486 (10)0.0228 (3)
H4A0.1238 (19)0.0660 (19)0.1114 (13)0.038 (5)*
H5A0.0411 (15)0.1745 (14)0.0290 (11)0.017 (4)*
C6A0.05908 (14)0.09311 (13)0.12814 (10)0.0213 (3)
O7A0.26091 (10)0.17264 (10)0.13163 (8)0.0314 (3)
C8A0.20714 (16)0.41538 (15)0.07429 (14)0.0317 (4)
H6A0.1809 (18)0.4937 (18)0.0830 (13)0.034 (5)*
H7A0.2207 (19)0.4242 (18)0.0113 (15)0.037 (5)*
H8A0.289 (2)0.4010 (19)0.0919 (14)0.041 (5)*
C9A0.08954 (17)0.30095 (17)0.23181 (12)0.0307 (4)
H9A0.0684 (18)0.3804 (18)0.2408 (13)0.032 (5)*
H10A0.026 (2)0.2390 (19)0.2714 (14)0.037 (5)*
H11A0.172 (2)0.2813 (18)0.2503 (13)0.038 (5)*
N10A0.23482 (12)0.27244 (12)0.09560 (9)0.0217 (3)
H18A0.2357 (17)0.2770 (16)0.0410 (13)0.026 (4)*
C11A0.33513 (14)0.31190 (13)0.14028 (10)0.0231 (3)
O12A0.33929 (11)0.31779 (12)0.21619 (8)0.0335 (3)
C13A0.44402 (16)0.34666 (16)0.09277 (13)0.0305 (4)
H19A0.46660.42620.09170.039 (5)*
H20A0.41860.34650.03190.051 (6)*
H21A0.51680.28920.12440.052 (6)*
C14A0.12905 (16)0.02484 (15)0.06853 (11)0.0267 (3)
H12A0.1523 (18)0.0767 (17)0.0052 (13)0.029 (5)*
H13A0.2046 (19)0.0057 (18)0.0901 (13)0.035 (5)*
H14A0.0683 (19)0.0469 (18)0.0745 (13)0.035 (5)*
C15A0.02582 (16)0.00846 (15)0.22706 (11)0.0276 (3)
H15A0.1054 (18)0.0210 (16)0.2508 (12)0.029 (5)*
H16A0.0213 (18)0.0488 (17)0.2663 (13)0.033 (5)*
H17A0.0263 (19)0.0634 (19)0.2316 (13)0.036 (5)*
N1B0.61828 (12)0.18040 (11)0.78811 (9)0.0244 (3)
C2B0.58367 (14)0.29879 (14)0.79719 (11)0.0260 (3)
C3B0.43801 (14)0.32692 (14)0.77012 (11)0.0241 (3)
H1B0.4099 (17)0.3516 (16)0.7065 (13)0.023 (4)*
H2B0.4176 (18)0.3931 (17)0.7905 (13)0.030 (5)*
C4B0.36358 (13)0.21897 (13)0.80999 (10)0.0207 (3)
H3B0.3861 (16)0.1936 (15)0.8760 (12)0.019 (4)*
C5B0.39503 (14)0.11894 (14)0.77470 (11)0.0234 (3)
H4B0.3452 (18)0.0482 (18)0.7979 (13)0.032 (5)*
H5B0.3695 (17)0.1496 (16)0.7077 (13)0.025 (4)*
C6B0.53724 (14)0.07459 (13)0.80326 (10)0.0213 (3)
O7B0.73880 (11)0.15473 (11)0.79702 (9)0.0372 (3)
C8B0.64581 (18)0.39721 (16)0.73294 (16)0.0399 (5)
H6B0.614 (2)0.399 (2)0.6741 (16)0.045 (6)*
H7B0.627 (2)0.473 (2)0.7412 (14)0.042 (5)*
H8B0.743 (2)0.379 (2)0.7467 (15)0.051 (6)*
C9B0.63577 (18)0.29397 (18)0.89417 (14)0.0379 (4)
H9B0.595 (2)0.239 (2)0.9377 (14)0.039 (5)*
H10B0.728 (2)0.276 (2)0.9083 (15)0.052 (6)*
H11B0.618 (2)0.377 (2)0.8990 (15)0.046 (6)*
N10B0.22627 (12)0.25405 (12)0.78331 (9)0.0226 (3)
H18B0.1862 (18)0.2563 (16)0.7330 (13)0.025 (4)*
C11B0.16324 (14)0.28998 (13)0.83490 (10)0.0230 (3)
O12B0.21542 (11)0.29206 (11)0.91060 (8)0.0326 (3)
C13B0.02255 (15)0.32707 (16)0.79651 (12)0.0314 (4)
H19B0.00470.34510.73220.047*
H20B0.02660.26190.82330.047*
H21B0.00010.39780.80950.047*
C14B0.56499 (17)0.00369 (16)0.74389 (12)0.0295 (3)
H12B0.5125 (18)0.0686 (18)0.7534 (13)0.033 (5)*
H13B0.5424 (18)0.0534 (18)0.6792 (14)0.033 (5)*
H14B0.654 (2)0.0292 (19)0.7610 (14)0.044 (6)*
C15B0.57383 (16)0.00604 (15)0.90299 (11)0.0265 (3)
H15B0.5233 (19)0.0784 (18)0.9121 (13)0.036 (5)*
H16B0.668 (2)0.0369 (18)0.9201 (13)0.035 (5)*
H17B0.5576 (17)0.0379 (17)0.9399 (13)0.029 (5)*
N1C0.81996 (11)0.20859 (11)0.46042 (8)0.0214 (3)
C2C0.77299 (14)0.32254 (14)0.47107 (11)0.0253 (3)
C3C0.63028 (14)0.35161 (14)0.42626 (11)0.0261 (3)
H1C0.6199 (17)0.3813 (16)0.3579 (12)0.024 (4)*
H2C0.5994 (17)0.4142 (17)0.4446 (12)0.027 (4)*
C4C0.55080 (14)0.24249 (14)0.45116 (10)0.0231 (3)
H3C0.5541 (16)0.2119 (16)0.5162 (12)0.023 (4)*
C5C0.60171 (14)0.14547 (14)0.42052 (11)0.0240 (3)
H4C0.5541 (18)0.0726 (18)0.4334 (12)0.031 (5)*
H5C0.5929 (16)0.1783 (15)0.3523 (12)0.022 (4)*
C6C0.74258 (14)0.10166 (13)0.46341 (10)0.0224 (3)
O7C0.94257 (10)0.18538 (10)0.47978 (8)0.0299 (3)
C8C0.84757 (18)0.42541 (16)0.42266 (15)0.0372 (4)
H6C0.816 (2)0.500 (2)0.4246 (14)0.045 (6)*
H7C0.936 (2)0.413 (2)0.4529 (16)0.053 (6)*
H8C0.8412 (19)0.4317 (18)0.3562 (14)0.035 (5)*
C9C0.79691 (17)0.3069 (2)0.57180 (13)0.0367 (4)
H9C0.744 (2)0.249 (2)0.6054 (15)0.048 (6)*
H10C0.890 (2)0.277 (2)0.6028 (15)0.051 (6)*
H11C0.783 (2)0.385 (2)0.5754 (15)0.047 (6)*
N10C0.41633 (12)0.27733 (12)0.40567 (9)0.0241 (3)
H18C0.3961 (18)0.2845 (17)0.3474 (14)0.032 (5)*
C11C0.32679 (14)0.30199 (14)0.44554 (10)0.0255 (3)
O12C0.34864 (11)0.29327 (13)0.52631 (8)0.0398 (3)
C13C0.19437 (15)0.34011 (17)0.38599 (12)0.0304 (3)
H19C0.13690.27990.40740.053 (6)*
H20C0.16450.41660.38770.045 (6)*
H21C0.19720.34800.32490.044 (6)*
C14C0.79241 (16)0.03321 (16)0.40917 (13)0.0298 (3)
H12C0.743 (2)0.036 (2)0.4092 (14)0.043 (5)*
H13C0.7862 (17)0.0847 (17)0.3467 (14)0.029 (5)*
H14C0.881 (2)0.0033 (18)0.4349 (14)0.037 (5)*
C15C0.76135 (17)0.01808 (17)0.56222 (12)0.0327 (4)
H15C0.715 (2)0.056 (2)0.5659 (14)0.043 (6)*
H16C0.856 (2)0.0088 (19)0.5860 (14)0.044 (6)*
H17C0.7333 (17)0.0582 (17)0.5977 (13)0.028 (5)*
O10.13294 (12)0.26369 (12)0.60071 (8)0.0307 (3)
H10.194 (2)0.275 (2)0.5746 (16)0.049 (6)*
H20.075 (2)0.234 (2)0.5666 (17)0.057 (7)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0150 (6)0.0228 (6)0.0280 (6)0.0030 (5)0.0036 (5)0.0103 (5)
C2A0.0175 (7)0.0218 (7)0.0295 (8)0.0034 (5)0.0040 (6)0.0120 (6)
C3A0.0210 (7)0.0215 (7)0.0270 (8)0.0035 (6)0.0065 (6)0.0092 (6)
C4A0.0170 (7)0.0261 (7)0.0209 (7)0.0031 (5)0.0044 (5)0.0085 (6)
C5A0.0215 (7)0.0243 (7)0.0248 (8)0.0022 (6)0.0059 (6)0.0107 (6)
C6A0.0196 (7)0.0208 (7)0.0238 (7)0.0009 (5)0.0036 (6)0.0086 (6)
O7A0.0177 (5)0.0318 (6)0.0480 (7)0.0065 (4)0.0095 (5)0.0163 (5)
C8A0.0227 (8)0.0253 (8)0.0458 (10)0.0006 (6)0.0041 (7)0.0125 (7)
C9A0.0310 (9)0.0369 (9)0.0321 (9)0.0080 (7)0.0115 (7)0.0190 (7)
N10A0.0180 (6)0.0295 (7)0.0201 (6)0.0041 (5)0.0057 (5)0.0106 (5)
C11A0.0194 (7)0.0231 (7)0.0261 (7)0.0003 (5)0.0033 (6)0.0082 (6)
O12A0.0304 (6)0.0467 (7)0.0273 (6)0.0080 (5)0.0033 (5)0.0191 (5)
C13A0.0196 (8)0.0322 (9)0.0399 (10)0.0039 (6)0.0086 (7)0.0113 (7)
C14A0.0276 (8)0.0259 (8)0.0280 (8)0.0056 (6)0.0046 (7)0.0119 (7)
C15A0.0283 (8)0.0266 (8)0.0249 (8)0.0019 (6)0.0041 (6)0.0060 (6)
N1B0.0173 (6)0.0244 (6)0.0310 (7)0.0002 (5)0.0068 (5)0.0079 (5)
C2B0.0197 (7)0.0212 (7)0.0354 (8)0.0014 (5)0.0031 (6)0.0093 (6)
C3B0.0198 (7)0.0228 (7)0.0290 (8)0.0002 (6)0.0037 (6)0.0089 (6)
C4B0.0164 (7)0.0256 (7)0.0199 (7)0.0002 (5)0.0023 (5)0.0086 (6)
C5B0.0195 (7)0.0259 (8)0.0260 (8)0.0029 (6)0.0035 (6)0.0114 (6)
C6B0.0202 (7)0.0214 (7)0.0232 (7)0.0027 (5)0.0054 (6)0.0082 (6)
O7B0.0179 (6)0.0330 (6)0.0603 (8)0.0001 (5)0.0127 (5)0.0127 (6)
C8B0.0270 (9)0.0249 (9)0.0632 (14)0.0041 (7)0.0145 (9)0.0059 (8)
C9B0.0304 (9)0.0386 (10)0.0452 (11)0.0021 (8)0.0071 (8)0.0238 (9)
N10B0.0166 (6)0.0310 (7)0.0213 (6)0.0010 (5)0.0018 (5)0.0116 (5)
C11B0.0232 (7)0.0225 (7)0.0254 (7)0.0029 (6)0.0075 (6)0.0094 (6)
O12B0.0331 (6)0.0429 (7)0.0275 (6)0.0017 (5)0.0064 (5)0.0194 (5)
C13B0.0221 (8)0.0340 (9)0.0419 (9)0.0003 (6)0.0087 (7)0.0169 (7)
C14B0.0310 (9)0.0314 (9)0.0290 (8)0.0020 (7)0.0062 (7)0.0142 (7)
C15B0.0292 (8)0.0249 (8)0.0242 (8)0.0007 (6)0.0052 (6)0.0071 (6)
N1C0.0152 (6)0.0246 (6)0.0256 (6)0.0026 (5)0.0031 (5)0.0108 (5)
C2C0.0194 (7)0.0273 (8)0.0335 (8)0.0027 (6)0.0039 (6)0.0168 (7)
C3C0.0207 (7)0.0250 (8)0.0335 (9)0.0006 (6)0.0027 (6)0.0128 (7)
C4C0.0166 (7)0.0298 (8)0.0212 (7)0.0002 (6)0.0013 (6)0.0081 (6)
C5C0.0189 (7)0.0248 (7)0.0280 (8)0.0034 (6)0.0022 (6)0.0103 (6)
C6C0.0191 (7)0.0214 (7)0.0262 (7)0.0032 (5)0.0031 (6)0.0083 (6)
O7C0.0156 (5)0.0354 (6)0.0421 (7)0.0023 (4)0.0039 (5)0.0189 (5)
C8C0.0271 (9)0.0261 (9)0.0601 (13)0.0075 (7)0.0093 (8)0.0168 (8)
C9C0.0264 (9)0.0544 (12)0.0396 (10)0.0021 (8)0.0026 (8)0.0322 (9)
N10C0.0168 (6)0.0336 (7)0.0203 (6)0.0004 (5)0.0005 (5)0.0093 (5)
C11C0.0194 (7)0.0308 (8)0.0269 (8)0.0046 (6)0.0046 (6)0.0106 (6)
O12C0.0216 (6)0.0727 (9)0.0287 (6)0.0032 (6)0.0052 (5)0.0221 (6)
C13C0.0193 (8)0.0406 (10)0.0308 (9)0.0005 (7)0.0025 (6)0.0133 (7)
C14C0.0266 (8)0.0278 (8)0.0389 (10)0.0008 (7)0.0042 (7)0.0183 (7)
C15C0.0290 (9)0.0326 (9)0.0299 (9)0.0010 (7)0.0047 (7)0.0029 (7)
O10.0234 (6)0.0457 (7)0.0277 (6)0.0057 (5)0.0049 (5)0.0190 (5)
Geometric parameters (Å, º) top
N1A—O7A1.2872 (16)C8B—H8B1.02 (2)
N1A—C2A1.4970 (18)C9B—H9B0.95 (2)
N1A—C6A1.4997 (18)C9B—H10B0.97 (2)
C2A—C8A1.528 (2)C9B—H11B1.02 (2)
C2A—C9A1.532 (2)N10B—C11B1.3306 (19)
C2A—C3A1.531 (2)N10B—H18B0.826 (19)
C3A—C4A1.525 (2)C11B—O12B1.2383 (18)
C3A—H1A0.975 (17)C11B—C13B1.507 (2)
C3A—H2A0.989 (18)C13B—H19B0.9600
C4A—N10A1.4606 (19)C13B—H20B0.9600
C4A—C5A1.520 (2)C13B—H21B0.9600
C4A—H3A1.029 (17)C14B—H12B1.01 (2)
C5A—C6A1.530 (2)C14B—H13B0.99 (2)
C5A—H4A1.01 (2)C14B—H14B0.98 (2)
C5A—H5A0.975 (17)C15B—H15B0.99 (2)
C6A—C14A1.529 (2)C15B—H16B1.02 (2)
C6A—C15A1.534 (2)C15B—H17B0.942 (19)
C8A—H6A1.01 (2)N1C—O7C1.2902 (16)
C8A—H7A0.96 (2)N1C—C2C1.4970 (18)
C8A—H8A0.97 (2)N1C—C6C1.4979 (18)
C9A—H9A1.01 (2)C2C—C8C1.527 (2)
C9A—H10A0.95 (2)C2C—C9C1.532 (2)
C9A—H11A0.99 (2)C2C—C3C1.533 (2)
N10A—C11A1.3388 (19)C3C—C4C1.525 (2)
N10A—H18A0.863 (19)C3C—H1C1.017 (18)
C11A—O12A1.2347 (19)C3C—H2C0.956 (18)
C11A—C13A1.504 (2)C4C—N10C1.4623 (18)
C13A—H19A0.9600C4C—C5C1.517 (2)
C13A—H20A0.9600C4C—H3C0.979 (18)
C13A—H21A0.9600C5C—C6C1.531 (2)
C14A—H12A0.97 (2)C5C—H4C0.98 (2)
C14A—H13A0.97 (2)C5C—H5C1.016 (17)
C14A—H14A1.03 (2)C6C—C14C1.526 (2)
C15A—H15A1.018 (19)C6C—C15C1.534 (2)
C15A—H16A0.97 (2)C8C—H6C0.95 (2)
C15A—H17A0.98 (2)C8C—H7C0.95 (2)
N1B—O7B1.2901 (16)C8C—H8C1.03 (2)
N1B—C2B1.4935 (19)C9C—H9C0.98 (2)
N1B—C6B1.4980 (19)C9C—H10C1.02 (2)
C2B—C9B1.525 (2)C9C—H11C0.95 (2)
C2B—C8B1.527 (2)N10C—C11C1.333 (2)
C2B—C3B1.533 (2)N10C—H18C0.89 (2)
C3B—C4B1.524 (2)C11C—O12C1.2388 (19)
C3B—H1B0.946 (18)C11C—C13C1.510 (2)
C3B—H2B0.975 (19)C13C—H19C0.9600
C4B—N10B1.4596 (18)C13C—H20C0.9600
C4B—C5B1.523 (2)C13C—H21C0.9600
C4B—H3B0.978 (17)C14C—H12C0.97 (2)
C5B—C6B1.531 (2)C14C—H13C0.97 (2)
C5B—H4B0.99 (2)C14C—H14C0.97 (2)
C5B—H5B0.991 (18)C15C—H15C0.99 (2)
C6B—C14B1.524 (2)C15C—H16C1.01 (2)
C6B—C15B1.532 (2)C15C—H17C0.938 (19)
C8B—H6B0.93 (2)O1—H10.84 (3)
C8B—H7B0.97 (2)O1—H20.89 (3)
O7A—N1A—C2A115.78 (11)H6B—C8B—H7B112.4 (19)
O7A—N1A—C6A115.87 (11)C2B—C8B—H8B111.2 (13)
C2A—N1A—C6A124.21 (11)H6B—C8B—H8B107.2 (18)
N1A—C2A—C8A107.81 (12)H7B—C8B—H8B109.5 (17)
N1A—C2A—C9A109.14 (13)C2B—C9B—H9B114.1 (13)
C8A—C2A—C9A109.16 (14)C2B—C9B—H10B108.1 (13)
N1A—C2A—C3A110.20 (11)H9B—C9B—H10B112.1 (19)
C8A—C2A—C3A108.61 (13)C2B—C9B—H11B109.2 (12)
C9A—C2A—C3A111.82 (12)H9B—C9B—H11B104.6 (17)
C4A—C3A—C2A114.35 (12)H10B—C9B—H11B108.5 (18)
C4A—C3A—H1A107.9 (10)C11B—N10B—C4B122.51 (13)
C2A—C3A—H1A109.4 (10)C11B—N10B—H18B117.9 (13)
C4A—C3A—H2A112.0 (10)C4B—N10B—H18B119.5 (13)
C2A—C3A—H2A107.1 (10)O12B—C11B—N10B122.67 (14)
H1A—C3A—H2A105.8 (14)O12B—C11B—C13B121.20 (13)
N10A—C4A—C5A109.19 (12)N10B—C11B—C13B116.13 (13)
N10A—C4A—C3A110.38 (12)C11B—C13B—H19B109.5
C5A—C4A—C3A108.15 (12)C11B—C13B—H20B109.5
N10A—C4A—H3A106.6 (9)H19B—C13B—H20B109.5
C5A—C4A—H3A112.4 (9)C11B—C13B—H21B109.5
C3A—C4A—H3A110.1 (9)H19B—C13B—H21B109.5
C4A—C5A—C6A113.78 (12)H20B—C13B—H21B109.5
C4A—C5A—H4A112.1 (12)C6B—C14B—H12B109.1 (11)
C6A—C5A—H4A107.1 (12)C6B—C14B—H13B111.6 (11)
C4A—C5A—H5A107.2 (9)H12B—C14B—H13B108.0 (16)
C6A—C5A—H5A109.4 (10)C6B—C14B—H14B111.7 (12)
H4A—C5A—H5A107.2 (15)H12B—C14B—H14B105.7 (16)
N1A—C6A—C14A107.71 (12)H13B—C14B—H14B110.5 (17)
N1A—C6A—C5A110.10 (11)C6B—C15B—H15B108.9 (11)
C14A—C6A—C5A108.81 (12)C6B—C15B—H16B110.4 (11)
N1A—C6A—C15A109.44 (12)H15B—C15B—H16B107.0 (16)
C14A—C6A—C15A109.59 (13)C6B—C15B—H17B109.9 (11)
C5A—C6A—C15A111.12 (12)H15B—C15B—H17B110.5 (16)
C2A—C8A—H6A109.3 (11)H16B—C15B—H17B110.1 (15)
C2A—C8A—H7A111.4 (12)O7C—N1C—C2C116.08 (11)
H6A—C8A—H7A109.9 (16)O7C—N1C—C6C115.49 (11)
C2A—C8A—H8A112.1 (13)C2C—N1C—C6C124.39 (11)
H6A—C8A—H8A106.5 (16)N1C—C2C—C8C107.70 (13)
H7A—C8A—H8A107.5 (17)N1C—C2C—C9C109.48 (13)
C2A—C9A—H9A110.4 (11)C8C—C2C—C9C110.00 (14)
C2A—C9A—H10A113.2 (12)N1C—C2C—C3C109.51 (12)
H9A—C9A—H10A109.3 (16)C8C—C2C—C3C108.84 (14)
C2A—C9A—H11A109.7 (12)C9C—C2C—C3C111.23 (13)
H9A—C9A—H11A106.5 (15)C4C—C3C—C2C113.53 (13)
H10A—C9A—H11A107.5 (17)C4C—C3C—H1C107.2 (10)
C11A—N10A—C4A123.20 (13)C2C—C3C—H1C109.2 (10)
C11A—N10A—H18A117.1 (12)C4C—C3C—H2C109.6 (11)
C4A—N10A—H18A119.4 (12)C2C—C3C—H2C107.3 (11)
O12A—C11A—N10A122.40 (14)H1C—C3C—H2C110.0 (15)
O12A—C11A—C13A121.91 (14)N10C—C4C—C5C109.25 (12)
N10A—C11A—C13A115.68 (14)N10C—C4C—C3C110.23 (12)
C11A—C13A—H19A109.5C5C—C4C—C3C108.23 (12)
C11A—C13A—H20A109.5N10C—C4C—H3C107.1 (10)
H19A—C13A—H20A109.5C5C—C4C—H3C111.1 (10)
C11A—C13A—H21A109.5C3C—C4C—H3C111.0 (10)
H19A—C13A—H21A109.5C4C—C5C—C6C114.20 (12)
H20A—C13A—H21A109.5C4C—C5C—H4C112.9 (11)
C6A—C14A—H12A111.4 (11)C6C—C5C—H4C106.0 (11)
C6A—C14A—H13A109.0 (12)C4C—C5C—H5C109.4 (9)
H12A—C14A—H13A109.4 (16)C6C—C5C—H5C107.5 (9)
C6A—C14A—H14A107.7 (11)H4C—C5C—H5C106.4 (14)
H12A—C14A—H14A109.0 (15)N1C—C6C—C14C108.32 (12)
H13A—C14A—H14A109.2 (16)N1C—C6C—C5C109.68 (12)
C6A—C15A—H15A112.1 (10)C14C—C6C—C5C109.06 (12)
C6A—C15A—H16A111.4 (11)N1C—C6C—C15C108.50 (12)
H15A—C15A—H16A107.5 (15)C14C—C6C—C15C109.12 (14)
C6A—C15A—H17A109.1 (12)C5C—C6C—C15C112.08 (13)
H15A—C15A—H17A107.4 (15)C2C—C8C—H6C109.8 (13)
H16A—C15A—H17A109.3 (16)C2C—C8C—H7C110.2 (14)
O7B—N1B—C2B115.80 (12)H6C—C8C—H7C106.8 (19)
O7B—N1B—C6B115.71 (11)C2C—C8C—H8C111.6 (11)
C2B—N1B—C6B124.61 (12)H6C—C8C—H8C109.5 (17)
N1B—C2B—C9B109.47 (13)H7C—C8C—H8C108.8 (17)
N1B—C2B—C8B107.61 (14)C2C—C9C—H9C114.2 (13)
C9B—C2B—C8B109.45 (15)C2C—C9C—H10C110.8 (13)
N1B—C2B—C3B110.10 (12)H9C—C9C—H10C106.7 (18)
C9B—C2B—C3B111.15 (14)C2C—C9C—H11C106.8 (14)
C8B—C2B—C3B108.99 (13)H9C—C9C—H11C110.8 (18)
C4B—C3B—C2B113.69 (12)H10C—C9C—H11C107.3 (18)
C4B—C3B—H1B106.7 (11)C11C—N10C—C4C123.81 (13)
C2B—C3B—H1B110.3 (11)C11C—N10C—H18C119.9 (12)
C4B—C3B—H2B109.3 (11)C4C—N10C—H18C116.2 (12)
C2B—C3B—H2B107.7 (11)O12C—C11C—N10C123.04 (14)
H1B—C3B—H2B109.1 (15)O12C—C11C—C13C121.34 (14)
N10B—C4B—C5B110.33 (12)N10C—C11C—C13C115.62 (14)
N10B—C4B—C3B110.29 (12)C11C—C13C—H19C109.5
C5B—C4B—C3B107.76 (12)C11C—C13C—H20C109.5
N10B—C4B—H3B106.5 (10)H19C—C13C—H20C109.5
C5B—C4B—H3B112.6 (10)C11C—C13C—H21C109.5
C3B—C4B—H3B109.4 (10)H19C—C13C—H21C109.5
C4B—C5B—C6B113.03 (12)H20C—C13C—H21C109.5
C4B—C5B—H4B109.5 (11)C6C—C14C—H12C110.3 (12)
C6B—C5B—H4B108.0 (11)C6C—C14C—H13C111.5 (11)
C4B—C5B—H5B108.9 (10)H12C—C14C—H13C108.5 (16)
C6B—C5B—H5B109.0 (10)C6C—C14C—H14C111.3 (12)
H4B—C5B—H5B108.2 (15)H12C—C14C—H14C107.5 (17)
N1B—C6B—C14B107.46 (12)H13C—C14C—H14C107.7 (16)
N1B—C6B—C5B110.30 (12)C6C—C15C—H15C110.2 (12)
C14B—C6B—C5B108.53 (12)C6C—C15C—H16C108.0 (12)
N1B—C6B—C15B109.09 (12)H15C—C15C—H16C107.5 (17)
C14B—C6B—C15B109.81 (13)C6C—C15C—H17C111.2 (11)
C5B—C6B—C15B111.57 (12)H15C—C15C—H17C109.9 (17)
C2B—C8B—H6B109.2 (14)H16C—C15C—H17C109.9 (16)
C2B—C8B—H7B107.3 (13)H1—O1—H2104 (2)
C4A—N10A—C11A—O12A1.6 (2)C3A—C4A—N10A—C11A91.05 (17)
C4B—N10B—C11B—O12B2.7 (2)C3B—C4B—N10B—C11B94.37 (16)
C4C—N10C—C11C—O12C2.7 (3)C3C—C4C—N10C—C11C99.78 (17)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N10A—H18A···O12Bi0.86 (2)2.01 (2)2.865 (2)173.3 (9)
N10B—H18B···O10.83 (2)2.06 (2)2.862 (2)165 (1)
N10C—H18C···O12A0.89 (2)1.97 (2)2.859 (2)173.3 (9)
O1—H1···O12C0.84 (3)1.94 (3)2.778 (2)174 (2)
O1—H2···O7Cii0.89 (3)2.00 (3)2.890 (2)174 (2)
C13C—H19C···O7Cii0.962.653.562 (2)158
C13C—H21C···O12A0.962.643.474 (2)146
C8A—H6A···O12Biii1.01 (2)2.57 (2)3.516 (2)156 (1)
C9C—H10C···O1iv1.02 (2)2.61 (2)3.540 (2)151 (2)
Symmetry codes: (i) x, y, z1; (ii) x1, y, z; (iii) x, y1, z+1; (iv) x+1, y, z.

Experimental details

Crystal data
Chemical formulaC11H5D16N2O2·0.33H2O
Mr235.34
Crystal system, space groupTriclinicP1
Temperature (K)150
a, b, c (Å)10.6940 (3), 11.7120 (3), 16.0480 (5)
α, β, γ (°)109.351 (1), 101.678 (1), 90.325 (1)
V3)1851.41 (9)
Z6
Radiation typeMo Kα
µ (mm1)0.08
Crystal size (mm)0.2 × 0.1 × 0.1
Data collection
DiffractometerNonius KappaCCD area-detector
diffractometer
Absorption correction
No. of measured, independent and
observed [I > 2σ(I)] reflections
35956, 8420, 6918
Rint0.055
(sin θ/λ)max1)0.650
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.048, 0.140, 1.05
No. of reflections8420
No. of parameters663
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.29, 0.28

Computer programs: COLLECT (Nonius, 1998) and DENZO (Otwinowski & Minor, 1997), COLLECT and DENZO, SHELXS97 (Sheldrick, 1990), SHELXL97 (Sheldrick, 1997), DIAMOND (Brandenburg & Putz, 2005), SHELXL97 and DIAMOND.

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N10A—H18A···O12Bi0.86 (2)2.01 (2)2.865 (2)173.3 (9)
N10B—H18B···O10.83 (2)2.06 (2)2.862 (2)165 (1)
N10C—H18C···O12A0.89 (2)1.97 (2)2.859 (2)173.3 (9)
O1—H1···O12C0.84 (3)1.94 (3)2.778 (2)174 (2)
O1—H2···O7Cii0.89 (3)2.00 (3)2.890 (2)174 (2)
C13C—H19C···O7Cii0.962.653.562 (2)158
C13C—H21C···O12A0.962.643.474 (2)146
C8A—H6A···O12Biii1.01 (2)2.57 (2)3.516 (2)156 (1)
C9C—H10C···O1iv1.02 (2)2.61 (2)3.540 (2)151 (2)
Symmetry codes: (i) x, y, z1; (ii) x1, y, z; (iii) x, y1, z+1; (iv) x+1, y, z.
Comparative geometrical parameters (Å) top
BondABCpubl
N1-O71.287 (2)1.290 (2)1.290 (2)yes
N1-C61.500 (2)1.498 (2)1.498 (2)yes
N1-C21.497 (2)1.494 (2)1.497 (2)yes
C2-C91.532 (2)1.525 (2)1.532 (2)yes
C2-C31.531 (2)1.533 (2)1.533 (2)yes
C2-C81.528 (2)1.527 (2)1.527 (2)yes
C3-C41.525 (2)1.524 (2)1.525 (2)yes
C4-N101.461 (2)1.460 (2)1.462 (2)yes
C4-C51.520 (2)1.523 (2)1.517 (2)yes
C5-C61.530 (2)1.531 (2)1.531 (2)yes
C6-C151.534 (2)1.532 (2)1.534 (2)yes
C6-C141.529 (2)1.524 (2)1.526 (2)yes
N10-C111.339 (2)1.331 (2)1.333 (2)yes
C11-O121.235 (2)1.238 (2)1.239 (2)yes
C11-C131.504 (2)1.507 (2)1.510 (2)yes
Comparative geometrical parameters (°) top
AngelsABCpubl
O7-N1-C6115.9 (1)115.7 (1)115.5 (1)yes
O7-N1-C2115.8 (1)115.8 (1)116.1 (1)yes
C6-N1-C2124.2 (1)124.6 (1)124.4 (1)yes
N1-C2-C9109.1 (1)109.5 (1)109.5 (1)yes
N1-C2-C3110.2 (1)110.1 (1)109.5 (1)yes
C9-C2-C3111.8 (1)111.1 (1)111.2 (1)yes
N1-C2-C8107.8 (1)107.6 (1)107.7 (1)yes
C9-C2-C8109.2 (1)109.5 (1)110.0 (1)yes
C3-C2-C8108.6 (1)109.0 (1)108.8 (1)yes
C4-C3-C2114.4 (1)113.7 (1)113.5 (1)yes
N10-C4-C3110.4 (1)110.3 (1)110.2 (1)yes
N10-C4-C5109.2 (1)110.3 (1)109.3 (1)yes
C3-C4-C5108.2 (1)107.8 (1)108.2 (1)yes
N1-C6-C15109.4 (1)109.1 (1)108.5 (1)yes
N1-C6-C14107.7 (1)107.5 (1)108.3 (1)yes
C15-C6-C14109.6 (1)109.8 (1)109.1 (1)yes
N1-C6-C5110.1 (1)110.3 (1)109.7 (1)yes
C15-C6-C5111.1 (1)111.6 (1)112.1 (1)yes
C14-C6-C5108.8 (1)108.5 (1)109.1 (1)yes
C11-N10-C4123.2 (1)122.5 (1)123.8 (1)yes
O12-C11-N10122.4 (1)122.7 (1)123.0 (1)yes
O12-C11-C13121.9 (1)121.2 (1)121.3 (1)yes
N10-C11-C13115.7 (1)116.1 (1)115.6 (1)yes
 

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