L4, or 3-[2,6-bis(diethylcarbamoyl)pyridin-4-yl]-N-(tert-butoxycarbonyl)alanine methyl ester, C24H38N4O6, crystallizes in neat [010] laths stabilized by abundant intra- and intermolecular hydrogen bonds. The strongest of these form [010] chains of molecules, thus rationalizing the fastest growth direction, while the slowest direction coincides with the normal to the (110) layers, which are linked by very weak hydrogen bonds. There exist two independent molecules, the distances and bond angles of which differ in a random manner only. The torsion and dihedral angles, however, differ so as to achieve optimal packing. The influence of the chiral group in the 4-position of the pyridine ring on the helical wrapping and on the ensuing diastereomeric induction is briefly discussed.
Supporting information
CCDC reference: 214416
Ligand L4 was synthesized from 4-bromo-N,N,N',N'-tetraethylpyridine-2,6-dicarboxamide via a palladium mediated reaction with Jackson's zinc reagent in a reasonable yield (61%). The details of the preparation have been described elsewhere (G. Muller et al. 2001a). The yellowish solid was recrystallized, by slow diffusion of hexane into a dichloromethane solution, to yield [010] joists. The HABITUS of the measured cut consisted of the {101} prism, the {100} pinacoid and the (010)/(010) cut planes.
The χ2 value of 2.902 calls for an explanation. Indeed, a δRexp versus δRstat NPP displays a slope of 1.9 and a δRexp axis intercept of 0.09. The line is perfectly straight (except in the tails), suggesting that the experimental s.u. values have been underestimated (a common observation in single-crystal diffraction experiments) rather than that the data are suspicious. All the other usual plots and the small number of inconsistent equivalents (70) confirm the sound nature of this data collection. The number of reflections is 291 short of completeness; these were overloaded reflections that could, unfortunately, not be remeasured because of technical problems. Friedel pairs were averaged. H atoms were placed in calculated positions and then refined using a riding model with variable C—H distances. Anisotropic displacement parameters were preferred for all non-H atoms.
Data collection: IPDS (Stoe & Cie, 1997); cell refinement: IPDS; data reduction: IPDS; program(s) used to solve structure: SIR97 (Altomare et al., 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1996); software used to prepare material for publication: SHELXTL, PLATON (Spek, 2003).
L4 is 3-[2,6-bis(diethylcarbamoyl)pyridin-4-yl]-
N-(
tert-butoxycarbonyl)alanine methyl ester
top
Crystal data top
C24H38N4O6 | F(000) = 1032 |
Mr = 478.58 | Dx = 1.199 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 8000 reflections |
a = 11.144 (2) Å | θ = 13.8–28.0° |
b = 13.047 (3) Å | µ = 0.09 mm−1 |
c = 18.429 (4) Å | T = 115 K |
β = 98.19 (3)° | Prismatic, yellow |
V = 2652.2 (10) Å3 | 0.4 × 0.4 × 0.15 mm |
Z = 4 | |
Data collection top
Stoe IPDS diffractometer | 5570 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.045 |
Graphite monochromator | θmax = 28.0°, θmin = 2.3° |
Detector resolution: 6.7 pixels mm-1 | h = −14→14 |
ϕ scans | k = −11→15 |
38694 measured reflections | l = −24→24 |
6220 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.057 | H-atom parameters constrained |
S = 2.90 | Weighting scheme based on measured s.u.'s |
6220 reflections | (Δ/σ)max = 0.001 |
663 parameters | Δρmax = 0.24 e Å−3 |
1 restraint | Δρmin = −0.20 e Å−3 |
Crystal data top
C24H38N4O6 | V = 2652.2 (10) Å3 |
Mr = 478.58 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 11.144 (2) Å | µ = 0.09 mm−1 |
b = 13.047 (3) Å | T = 115 K |
c = 18.429 (4) Å | 0.4 × 0.4 × 0.15 mm |
β = 98.19 (3)° | |
Data collection top
Stoe IPDS diffractometer | 5570 reflections with I > 2σ(I) |
38694 measured reflections | Rint = 0.045 |
6220 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.035 | 1 restraint |
wR(F2) = 0.057 | H-atom parameters constrained |
S = 2.90 | Δρmax = 0.24 e Å−3 |
6220 reflections | Δρmin = −0.20 e Å−3 |
663 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement on F2 for ALL reflections except for 0 with very negative F2 or flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating _R_factor_obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | −0.13067 (12) | 0.47218 (12) | 0.58076 (8) | 0.0211 (3) | |
O2 | −0.06780 (13) | −0.01964 (12) | 0.62291 (8) | 0.0225 (4) | |
O3 | 0.36159 (14) | 0.20812 (13) | 0.36137 (8) | 0.0275 (4) | |
O4 | 0.39722 (14) | 0.37405 (14) | 0.38399 (8) | 0.0311 (4) | |
O5 | 0.34677 (12) | 0.34885 (12) | 0.59950 (7) | 0.0230 (4) | |
O6 | 0.23690 (13) | 0.49583 (12) | 0.57621 (7) | 0.0214 (3) | |
N1 | −0.08211 (14) | 0.21795 (14) | 0.60075 (8) | 0.0154 (4) | |
N2 | −0.29051 (14) | 0.36279 (14) | 0.57196 (9) | 0.0189 (4) | |
N3 | 0.08920 (14) | 0.05260 (15) | 0.69720 (8) | 0.0182 (4) | |
N4 | 0.25076 (14) | 0.38857 (14) | 0.48523 (9) | 0.0171 (4) | |
H4A | 0.2244 | 0.4329 | 0.4598 | 0.021* | |
C1 | −0.00314 (16) | 0.14455 (17) | 0.58858 (10) | 0.0149 (4) | |
C2 | 0.06786 (17) | 0.14759 (18) | 0.53189 (10) | 0.0169 (5) | |
H2A | 0.1230 | 0.0889 | 0.5243 | 0.020* | |
C3 | 0.06134 (17) | 0.23259 (17) | 0.48626 (10) | 0.0161 (5) | |
C4 | −0.01781 (16) | 0.31131 (18) | 0.49975 (10) | 0.0152 (4) | |
H4B | −0.0234 | 0.3737 | 0.4705 | 0.018* | |
C5 | −0.08835 (16) | 0.29913 (17) | 0.55553 (10) | 0.0151 (4) | |
C6 | −0.17281 (17) | 0.38555 (18) | 0.57013 (10) | 0.0162 (5) | |
C7 | −0.37071 (18) | 0.44674 (19) | 0.58929 (12) | 0.0234 (5) | |
H7A | −0.3235 | 0.4940 | 0.6275 | 0.028* | |
H7B | −0.4417 | 0.4164 | 0.6117 | 0.028* | |
C8 | −0.4199 (2) | 0.5094 (2) | 0.52201 (12) | 0.0298 (6) | |
H8A | −0.4776 | 0.5635 | 0.5361 | 0.045* | |
H8B | −0.4646 | 0.4627 | 0.4834 | 0.045* | |
H8C | −0.3503 | 0.5439 | 0.5017 | 0.045* | |
C9 | −0.34856 (18) | 0.26419 (19) | 0.55089 (12) | 0.0242 (5) | |
H9A | −0.2954 | 0.2241 | 0.5239 | 0.029* | |
H9B | −0.4242 | 0.2766 | 0.5181 | 0.029* | |
C10 | −0.3758 (2) | 0.2026 (2) | 0.61649 (13) | 0.0348 (6) | |
H10A | −0.4201 | 0.1370 | 0.5988 | 0.052* | |
H10B | −0.4288 | 0.2448 | 0.6458 | 0.052* | |
H10C | −0.2968 | 0.1846 | 0.6488 | 0.052* | |
C11 | 0.00314 (17) | 0.05276 (18) | 0.63846 (10) | 0.0163 (4) | |
C12 | 0.17143 (19) | 0.13921 (19) | 0.71780 (11) | 0.0239 (5) | |
H12A | 0.1764 | 0.1507 | 0.7692 | 0.029* | |
H12B | 0.1381 | 0.1993 | 0.6933 | 0.029* | |
C13 | 0.2992 (2) | 0.1223 (2) | 0.69897 (13) | 0.0335 (6) | |
H13A | 0.3490 | 0.1876 | 0.7098 | 0.050* | |
H13B | 0.2943 | 0.1045 | 0.6447 | 0.050* | |
H13C | 0.3396 | 0.0636 | 0.7299 | 0.050* | |
C14 | 0.1012 (2) | −0.03859 (19) | 0.74444 (11) | 0.0246 (5) | |
H14A | 0.0198 | −0.0649 | 0.74874 | 0.029* | |
H14B | 0.1397 | −0.0186 | 0.7937 | 0.029* | |
C15 | 0.1747 (2) | −0.1232 (2) | 0.71641 (14) | 0.0396 (7) | |
H15A | 0.1766 | −0.1859 | 0.7508 | 0.059* | |
H15B | 0.2621 | −0.0977 | 0.7150 | 0.059* | |
H15C | 0.1357 | −0.1439 | 0.6642 | 0.059* | |
C16 | 0.14021 (17) | 0.24028 (17) | 0.42608 (10) | 0.0167 (5) | |
H16A | 0.0994 | 0.2818 | 0.3862 | 0.020* | |
H16B | 0.1526 | 0.1723 | 0.4069 | 0.020* | |
C17 | 0.26427 (16) | 0.28867 (17) | 0.45502 (10) | 0.0161 (4) | |
H17A | 0.3023 | 0.2449 | 0.4953 | 0.019* | |
C18 | 0.34540 (17) | 0.28450 (18) | 0.39483 (11) | 0.0182 (5) | |
C19 | 0.4808 (2) | 0.3726 (2) | 0.33017 (15) | 0.0461 (8) | |
H19A | 0.5181 | 0.4428 | 0.3272 | 0.069* | |
H19B | 0.4355 | 0.3533 | 0.2806 | 0.069* | |
H19C | 0.5469 | 0.3207 | 0.3453 | 0.069* | |
C20 | 0.28376 (16) | 0.40624 (18) | 0.55790 (11) | 0.0180 (5) | |
C21 | 0.24384 (18) | 0.52630 (18) | 0.65384 (10) | 0.0218 (5) | |
C22 | 0.19722 (19) | 0.44173 (19) | 0.69936 (11) | 0.0239 (5) | |
H22A | 0.1163 | 0.4168 | 0.6742 | 0.036* | |
H22B | 0.1878 | 0.4693 | 0.7493 | 0.036* | |
H22C | 0.2567 | 0.3831 | 0.7048 | 0.036* | |
C23 | 0.1576 (2) | 0.6168 (2) | 0.64875 (13) | 0.0310 (6) | |
H23A | 0.0726 | 0.5932 | 0.6267 | 0.047* | |
H23B | 0.1869 | 0.6721 | 0.6161 | 0.047* | |
H23C | 0.1551 | 0.6460 | 0.7000 | 0.047* | |
C24 | 0.3729 (2) | 0.5582 (2) | 0.68241 (13) | 0.0343 (6) | |
H24A | 0.4290 | 0.4962 | 0.6827 | 0.051* | |
H24B | 0.3766 | 0.5861 | 0.7345 | 0.051* | |
H24C | 0.4000 | 0.6139 | 0.6492 | 0.051* | |
O1A | −0.14632 (12) | 0.53209 (12) | 1.06909 (7) | 0.0210 (4) | |
O2A | −0.07864 (12) | 0.05176 (12) | 1.13155 (7) | 0.0218 (3) | |
O3A | 0.34737 (14) | 0.25551 (14) | 0.85549 (8) | 0.0300 (4) | |
O4A | 0.41288 (13) | 0.41303 (13) | 0.88769 (8) | 0.0265 (4) | |
O5A | 0.32735 (13) | 0.39567 (13) | 1.09555 (7) | 0.0239 (4) | |
O6A | 0.25146 (13) | 0.55589 (12) | 1.06990 (7) | 0.0225 (3) | |
N1A | −0.09261 (14) | 0.27904 (14) | 1.09255 (9) | 0.0161 (4) | |
N2A | −0.30183 (14) | 0.41971 (14) | 1.06750 (9) | 0.0186 (4) | |
N3A | 0.09569 (14) | 0.12164 (14) | 1.18945 (8) | 0.0169 (4) | |
N4A | 0.25045 (14) | 0.44425 (14) | 0.97934 (8) | 0.0158 (4) | |
H4AB | 0.2298 | 0.4909 | 0.9533 | 0.019* | |
C1A | −0.01104 (16) | 0.20690 (17) | 1.08160 (10) | 0.0151 (4) | |
C2A | 0.05917 (17) | 0.20979 (17) | 1.02523 (10) | 0.0162 (4) | |
H2AA | 0.1105 | 0.1567 | 1.01891 | 0.019* | |
C3A | 0.05095 (17) | 0.29396 (17) | 0.97832 (10) | 0.0161 (4) | |
C4A | −0.02947 (16) | 0.37137 (18) | 0.99065 (10) | 0.0154 (4) | |
H4AA | −0.0362 | 0.4337 | 0.9604 | 0.018* | |
C5A | −0.10081 (16) | 0.35929 (17) | 1.04679 (10) | 0.0146 (4) | |
C6A | −0.18630 (17) | 0.44422 (18) | 1.06129 (10) | 0.0163 (4) | |
C7A | −0.38131 (18) | 0.50342 (19) | 1.08679 (11) | 0.0218 (5) | |
H7AA | −0.3329 | 0.5497 | 1.1258 | 0.026* | |
H7AB | −0.4525 | 0.4723 | 1.1093 | 0.026* | |
C8A | −0.43122 (19) | 0.56846 (19) | 1.02051 (12) | 0.0272 (5) | |
H8AA | −0.4880 | 0.6221 | 1.0358 | 0.041* | |
H8AB | −0.4768 | 0.5231 | 0.9815 | 0.041* | |
H8AC | −0.3619 | 0.6032 | 1.0003 | 0.041* | |
C9A | −0.35970 (18) | 0.32107 (18) | 1.04895 (12) | 0.0226 (5) | |
H9AA | −0.3076 | 0.2804 | 1.0198 | 0.027* | |
H9AB | −0.4390 | 0.3331 | 1.0174 | 0.027* | |
C10A | −0.3816 (2) | 0.2587 (2) | 1.11555 (12) | 0.0301 (6) | |
H10D | −0.4274 | 0.1939 | 1.0989 | 0.045* | |
H10E | −0.4310 | 0.3006 | 1.1468 | 0.045* | |
H10F | −0.3011 | 0.2401 | 1.1453 | 0.045* | |
C11A | −0.00069 (17) | 0.11984 (17) | 1.13646 (10) | 0.0159 (4) | |
C12A | 0.18809 (18) | 0.20302 (19) | 1.19726 (11) | 0.0221 (5) | |
H12C | 0.1962 | 0.2320 | 1.2497 | 0.026* | |
H12D | 0.1594 | 0.2616 | 1.1616 | 0.026* | |
C13A | 0.31142 (19) | 0.1667 (2) | 1.18236 (13) | 0.0311 (6) | |
H13D | 0.3659 | 0.2257 | 1.1820 | 0.047* | |
H13E | 0.3031 | 0.1322 | 1.1346 | 0.047* | |
H13F | 0.3452 | 0.1186 | 1.2209 | 0.047* | |
C14A | 0.10670 (18) | 0.04140 (18) | 1.24616 (10) | 0.0204 (5) | |
H14C | 0.0244 | 0.0274 | 1.2598 | 0.025* | |
H14D | 0.1592 | 0.0677 | 1.2909 | 0.025* | |
C15A | 0.1594 (2) | −0.05802 (19) | 1.22315 (11) | 0.0261 (5) | |
H15D | 0.1634 | −0.1087 | 1.2641 | 0.039* | |
H15E | 0.2428 | −0.0455 | 1.2111 | 0.039* | |
H15F | 0.1069 | −0.0857 | 1.1790 | 0.039* | |
C17A | 0.25682 (16) | 0.34268 (16) | 0.94937 (10) | 0.0150 (4) | |
H17B | 0.2905 | 0.2955 | 0.9924 | 0.018* | |
C16A | 0.13002 (16) | 0.30060 (17) | 0.91827 (10) | 0.0158 (4) | |
H16C | 0.0906 | 0.3474 | 0.8778 | 0.019* | |
H16D | 0.1386 | 0.2300 | 0.8965 | 0.019* | |
C18A | 0.34196 (17) | 0.33182 (18) | 0.89154 (11) | 0.0169 (5) | |
C19A | 0.5049 (2) | 0.4009 (2) | 0.83960 (13) | 0.0365 (7) | |
H19D | 0.5441 | 0.4671 | 0.8338 | 0.055* | |
H19E | 0.4668 | 0.3762 | 0.7916 | 0.055* | |
H19F | 0.5658 | 0.3512 | 0.8611 | 0.055* | |
C20A | 0.28014 (16) | 0.45934 (18) | 1.05262 (10) | 0.0168 (5) | |
C21A | 0.25508 (18) | 0.58613 (18) | 1.14752 (11) | 0.0213 (5) | |
C22A | 0.1744 (2) | 0.5151 (2) | 1.18468 (13) | 0.0357 (7) | |
H22D | 0.0926 | 0.5088 | 1.1531 | 0.054* | |
H22E | 0.1634 | 0.5443 | 1.2342 | 0.054* | |
H22F | 0.2136 | 0.4451 | 1.1914 | 0.054* | |
C23A | 0.2021 (3) | 0.6928 (2) | 1.14171 (13) | 0.0408 (7) | |
H23D | 0.1175 | 0.6900 | 1.1152 | 0.061* | |
H23E | 0.2526 | 0.7377 | 1.1142 | 0.061* | |
H23F | 0.2011 | 0.7213 | 1.1920 | 0.061* | |
C24A | 0.38499 (19) | 0.5878 (2) | 1.18641 (12) | 0.0272 (6) | |
H24D | 0.4192 | 0.5163 | 1.1883 | 0.041* | |
H24E | 0.3863 | 0.6146 | 1.2377 | 0.041* | |
H24F | 0.4354 | 0.6337 | 1.1589 | 0.041* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0197 (7) | 0.0141 (11) | 0.0304 (8) | −0.0014 (6) | 0.0063 (6) | −0.0024 (6) |
O2 | 0.0249 (8) | 0.0175 (11) | 0.0243 (8) | −0.0058 (6) | 0.0004 (6) | 0.0013 (6) |
O3 | 0.0323 (9) | 0.0230 (12) | 0.0308 (8) | 0.0010 (7) | 0.0166 (7) | −0.0052 (7) |
O4 | 0.0361 (9) | 0.0285 (13) | 0.0326 (9) | −0.0111 (8) | 0.0187 (7) | −0.0041 (7) |
O5 | 0.0219 (7) | 0.0247 (11) | 0.0214 (7) | 0.0072 (6) | −0.0008 (6) | −0.0042 (6) |
O6 | 0.0273 (8) | 0.0189 (10) | 0.0174 (7) | 0.0052 (6) | 0.0015 (6) | −0.0034 (6) |
N1 | 0.0158 (8) | 0.0127 (12) | 0.0176 (8) | −0.0013 (7) | 0.0025 (6) | −0.0014 (7) |
N2 | 0.0147 (8) | 0.0173 (13) | 0.0249 (9) | 0.0006 (7) | 0.0036 (7) | −0.0002 (8) |
N3 | 0.0214 (8) | 0.0138 (12) | 0.0188 (8) | 0.0011 (7) | 0.0006 (7) | −0.0019 (7) |
N4 | 0.0216 (8) | 0.0121 (12) | 0.0177 (9) | 0.0026 (7) | 0.0024 (7) | 0.0012 (7) |
C1 | 0.0135 (9) | 0.0126 (14) | 0.0176 (10) | 0.0002 (8) | −0.0010 (7) | −0.0021 (8) |
C2 | 0.0141 (9) | 0.0161 (15) | 0.0203 (10) | 0.0005 (8) | 0.0019 (8) | −0.0019 (8) |
C3 | 0.0154 (9) | 0.0146 (15) | 0.0183 (10) | −0.0036 (8) | 0.0026 (8) | −0.0040 (8) |
C4 | 0.0172 (10) | 0.0114 (14) | 0.0166 (9) | −0.0026 (8) | 0.0011 (7) | −0.0012 (8) |
C5 | 0.0128 (9) | 0.0127 (14) | 0.0194 (10) | −0.0015 (8) | 0.0016 (7) | −0.0026 (8) |
C6 | 0.0172 (9) | 0.0176 (15) | 0.0142 (9) | 0.0017 (8) | 0.0028 (7) | 0.0038 (8) |
C7 | 0.0157 (10) | 0.0249 (16) | 0.0306 (12) | 0.0045 (9) | 0.0063 (8) | −0.0004 (10) |
C8 | 0.0238 (12) | 0.0253 (17) | 0.0380 (13) | 0.0065 (10) | −0.0035 (10) | −0.0016 (11) |
C9 | 0.0176 (10) | 0.0212 (16) | 0.0319 (12) | −0.0037 (9) | −0.0034 (9) | 0.0000 (9) |
C10 | 0.0259 (12) | 0.0296 (19) | 0.0490 (16) | −0.0053 (10) | 0.0059 (11) | 0.0103 (12) |
C11 | 0.0160 (9) | 0.0171 (14) | 0.0161 (9) | 0.0048 (8) | 0.0035 (7) | −0.0019 (8) |
C12 | 0.0269 (12) | 0.0169 (16) | 0.0255 (11) | 0.0007 (9) | −0.0044 (9) | −0.0033 (9) |
C13 | 0.0288 (12) | 0.0364 (19) | 0.0343 (13) | −0.0072 (11) | 0.0015 (10) | −0.0018 (11) |
C14 | 0.0327 (12) | 0.0214 (16) | 0.0182 (10) | 0.0016 (10) | −0.0015 (9) | 0.0061 (9) |
C15 | 0.0483 (15) | 0.0226 (19) | 0.0474 (15) | 0.0143 (12) | 0.0053 (12) | 0.0053 (12) |
C16 | 0.0180 (10) | 0.0176 (15) | 0.0151 (10) | −0.0007 (8) | 0.0049 (8) | −0.0036 (8) |
C17 | 0.0165 (10) | 0.0163 (15) | 0.0158 (9) | 0.0014 (8) | 0.0031 (7) | 0.0002 (8) |
C18 | 0.0131 (9) | 0.0225 (16) | 0.0183 (10) | −0.0005 (9) | 0.0005 (8) | 0.0010 (9) |
C19 | 0.0516 (16) | 0.047 (2) | 0.0474 (16) | −0.0198 (14) | 0.0350 (13) | −0.0066 (13) |
C20 | 0.0122 (9) | 0.0197 (15) | 0.0222 (11) | −0.0017 (8) | 0.0033 (8) | −0.0009 (9) |
C21 | 0.0250 (11) | 0.0213 (17) | 0.0184 (10) | 0.0027 (9) | 0.0009 (8) | −0.0068 (9) |
C22 | 0.0249 (11) | 0.0213 (15) | 0.0260 (11) | 0.0017 (9) | 0.0054 (9) | −0.0014 (9) |
C23 | 0.0428 (14) | 0.0227 (17) | 0.0281 (12) | 0.0085 (11) | 0.0070 (10) | −0.0058 (10) |
C24 | 0.0298 (12) | 0.0407 (19) | 0.0324 (12) | −0.0079 (11) | 0.0045 (10) | −0.0126 (12) |
O1A | 0.0212 (7) | 0.0152 (11) | 0.0281 (8) | −0.0001 (6) | 0.0082 (6) | −0.0003 (6) |
O2A | 0.0222 (7) | 0.0189 (10) | 0.0237 (7) | −0.0048 (6) | 0.0008 (6) | 0.0045 (6) |
O3A | 0.0321 (8) | 0.0275 (12) | 0.0342 (9) | −0.0050 (7) | 0.0177 (7) | −0.0109 (8) |
O4A | 0.0236 (8) | 0.0262 (12) | 0.0329 (9) | −0.0079 (7) | 0.0145 (6) | −0.0056 (7) |
O5A | 0.0300 (8) | 0.0209 (11) | 0.0193 (7) | 0.0072 (7) | −0.0018 (6) | −0.0015 (6) |
O6A | 0.0307 (8) | 0.0183 (11) | 0.0176 (7) | 0.0051 (7) | 0.0003 (6) | −0.0061 (6) |
N1A | 0.0151 (8) | 0.0139 (12) | 0.0196 (9) | −0.0002 (7) | 0.0035 (6) | −0.0008 (7) |
N2A | 0.0161 (8) | 0.0174 (13) | 0.0235 (9) | 0.0028 (7) | 0.0065 (7) | 0.0012 (7) |
N3A | 0.0180 (8) | 0.0156 (12) | 0.0170 (8) | −0.0011 (7) | 0.0018 (6) | 0.0012 (7) |
N4A | 0.0201 (8) | 0.0105 (11) | 0.0166 (8) | 0.0015 (7) | 0.0023 (6) | 0.0007 (7) |
C1A | 0.0142 (9) | 0.0135 (14) | 0.0169 (9) | −0.0023 (8) | −0.0002 (7) | −0.0005 (8) |
C2A | 0.0149 (9) | 0.0131 (14) | 0.0207 (10) | 0.0024 (8) | 0.0033 (8) | −0.0041 (8) |
C3A | 0.0143 (9) | 0.0179 (14) | 0.0160 (9) | −0.0036 (8) | 0.0015 (7) | −0.0029 (8) |
C4A | 0.0155 (9) | 0.0144 (14) | 0.0162 (10) | −0.0009 (8) | 0.0024 (7) | −0.0010 (8) |
C5A | 0.0123 (9) | 0.0129 (13) | 0.0181 (10) | −0.0017 (8) | 0.0003 (7) | −0.0011 (8) |
C6A | 0.0177 (9) | 0.0182 (15) | 0.0136 (9) | 0.0020 (9) | 0.0037 (7) | 0.0035 (8) |
C7A | 0.0180 (10) | 0.0208 (15) | 0.0277 (11) | 0.0037 (9) | 0.0069 (8) | −0.0004 (9) |
C8A | 0.0226 (11) | 0.0268 (17) | 0.0307 (12) | 0.0049 (9) | −0.0008 (9) | −0.0017 (10) |
C9A | 0.0165 (10) | 0.0224 (16) | 0.0282 (11) | −0.0036 (9) | 0.0006 (8) | −0.0038 (9) |
C10A | 0.0272 (12) | 0.0265 (18) | 0.0371 (13) | −0.0072 (10) | 0.0056 (10) | 0.0020 (11) |
C11A | 0.0169 (10) | 0.0162 (14) | 0.0154 (9) | 0.0024 (8) | 0.0046 (7) | −0.0022 (8) |
C12A | 0.0219 (11) | 0.0214 (15) | 0.0214 (10) | −0.0044 (9) | −0.0022 (8) | −0.0004 (9) |
C13A | 0.0228 (12) | 0.0398 (19) | 0.0314 (12) | −0.0083 (10) | 0.0058 (10) | −0.0010 (10) |
C14A | 0.0231 (10) | 0.0220 (15) | 0.0162 (9) | 0.0016 (9) | 0.0024 (8) | 0.0026 (9) |
C15A | 0.0342 (12) | 0.0208 (16) | 0.0218 (11) | 0.0038 (10) | −0.0009 (9) | 0.0016 (9) |
C17A | 0.0163 (10) | 0.0141 (14) | 0.0150 (9) | 0.0010 (8) | 0.0036 (7) | −0.0008 (8) |
C16A | 0.0154 (9) | 0.0172 (14) | 0.0152 (9) | −0.0008 (8) | 0.0042 (7) | −0.0026 (8) |
C18A | 0.0144 (9) | 0.0189 (15) | 0.0172 (10) | 0.0013 (8) | 0.0017 (8) | 0.0024 (8) |
C19A | 0.0298 (12) | 0.045 (2) | 0.0397 (14) | −0.0106 (12) | 0.0223 (11) | −0.0033 (12) |
C20A | 0.0140 (10) | 0.0173 (15) | 0.0195 (10) | −0.0011 (8) | 0.0040 (8) | −0.0030 (9) |
C21A | 0.0239 (11) | 0.0185 (16) | 0.0208 (11) | 0.0039 (9) | 0.0008 (8) | −0.0062 (8) |
C22A | 0.0298 (12) | 0.047 (2) | 0.0328 (13) | −0.0123 (11) | 0.0138 (10) | −0.0163 (12) |
C23A | 0.0515 (16) | 0.034 (2) | 0.0335 (14) | 0.0189 (13) | −0.0068 (12) | −0.0126 (11) |
C24A | 0.0236 (11) | 0.0343 (18) | 0.0231 (11) | −0.0014 (10) | 0.0008 (9) | −0.0099 (10) |
Geometric parameters (Å, º) top
O1—C6 | 1.229 (3) | O1A—C6A | 1.231 (3) |
O2—C11 | 1.239 (3) | O2A—C11A | 1.237 (3) |
O3—C18 | 1.199 (3) | O3A—C18A | 1.203 (3) |
O4—C18 | 1.331 (3) | O4A—C18A | 1.330 (3) |
O4—C19 | 1.454 (3) | O4A—C19A | 1.457 (2) |
O5—C20 | 1.220 (3) | O5A—C20A | 1.214 (3) |
O6—C20 | 1.343 (3) | O6A—C20A | 1.349 (3) |
O6—C21 | 1.476 (2) | O6A—C21A | 1.479 (2) |
N1—C1 | 1.341 (3) | N1A—C5A | 1.339 (3) |
N1—C5 | 1.343 (3) | N1A—C1A | 1.343 (3) |
N2—C6 | 1.350 (2) | N2A—C6A | 1.347 (3) |
N2—C9 | 1.467 (3) | N2A—C9A | 1.458 (3) |
N2—C7 | 1.477 (3) | N2A—C7A | 1.481 (3) |
N3—C11 | 1.340 (2) | N3A—C11A | 1.345 (2) |
N3—C14 | 1.469 (3) | N3A—C12A | 1.472 (3) |
N3—C12 | 1.470 (3) | N3A—C14A | 1.472 (3) |
N4—C20 | 1.357 (3) | N4A—C20A | 1.358 (2) |
N4—C17 | 1.434 (3) | N4A—C17A | 1.441 (3) |
N4—H4A | 0.7751 | N4A—H4AB | 0.7881 |
C1—C2 | 1.398 (3) | C1A—C2A | 1.387 (3) |
C1—C11 | 1.505 (3) | C1A—C11A | 1.514 (3) |
C2—C3 | 1.387 (3) | C2A—C3A | 1.392 (3) |
C2—H2A | 1.0035 | C2A—H2AA | 0.9161 |
C3—C4 | 1.399 (3) | C3A—C4A | 1.390 (3) |
C3—C16 | 1.513 (3) | C3A—C16A | 1.512 (3) |
C4—C5 | 1.389 (3) | C4A—C5A | 1.401 (3) |
C4—H4B | 0.9736 | C4A—H4AA | 0.9832 |
C5—C6 | 1.517 (3) | C5A—C6A | 1.510 (3) |
C7—C8 | 1.521 (3) | C7A—C8A | 1.526 (3) |
C7—H7A | 1.0233 | C7A—H7AA | 1.0300 |
C7—H7B | 1.0233 | C7A—H7AB | 1.0300 |
C8—H8A | 1.0132 | C8A—H8AA | 1.0106 |
C8—H8B | 1.0132 | C8A—H8AB | 1.0106 |
C8—H8C | 1.0132 | C8A—H8AC | 1.0106 |
C9—C10 | 1.518 (3) | C9A—C10A | 1.521 (3) |
C9—H9A | 0.9782 | C9A—H9AA | 0.9985 |
C9—H9B | 0.9782 | C9A—H9AB | 0.9985 |
C10—H10A | 1.0173 | C10A—H10D | 1.0122 |
C10—H10B | 1.0173 | C10A—H10E | 1.0122 |
C10—H10C | 1.0173 | C10A—H10F | 1.0122 |
C12—C13 | 1.529 (3) | C12A—C13A | 1.515 (3) |
C12—H12A | 0.9533 | C12A—H12C | 1.0288 |
C12—H12B | 0.9533 | C12A—H12D | 1.0288 |
C13—H13A | 1.0206 | C13A—H13D | 0.9813 |
C13—H13B | 1.0206 | C13A—H13E | 0.9813 |
C13—H13C | 1.0206 | C13A—H13F | 0.9813 |
C14—C15 | 1.509 (3) | C14A—C15A | 1.509 (3) |
C14—H14A | 0.9831 | C14A—H14C | 1.0017 |
C14—H14B | 0.9831 | C14A—H14D | 1.0017 |
C15—H15A | 1.0335 | C15A—H15D | 0.9990 |
C15—H15B | 1.0335 | C15A—H15E | 0.9990 |
C15—H15C | 1.0335 | C15A—H15F | 0.9990 |
C16—C17 | 1.544 (3) | C17A—C18A | 1.531 (3) |
C16—H16A | 0.9718 | C17A—C16A | 1.548 (3) |
C16—H16B | 0.9718 | C17A—H17B | 1.0315 |
C17—C18 | 1.529 (3) | C16A—H16C | 1.0147 |
C17—H17A | 0.9835 | C16A—H16D | 1.0147 |
C19—H19A | 1.0099 | C19A—H19D | 0.9799 |
C19—H19B | 1.0099 | C19A—H19E | 0.9799 |
C19—H19C | 1.0099 | C19A—H19F | 0.9799 |
C21—C23 | 1.517 (3) | C21A—C23A | 1.510 (3) |
C21—C24 | 1.518 (3) | C21A—C22A | 1.520 (3) |
C21—C22 | 1.522 (3) | C21A—C24A | 1.521 (3) |
C22—H22A | 1.0079 | C22A—H22D | 1.0126 |
C22—H22B | 1.0079 | C22A—H22E | 1.0126 |
C22—H22C | 1.0079 | C22A—H22F | 1.0126 |
C23—H23A | 1.0229 | C23A—H23D | 0.9994 |
C23—H23B | 1.0229 | C23A—H23E | 0.9994 |
C23—H23C | 1.0229 | C23A—H23F | 0.9994 |
C24—H24A | 1.0219 | C24A—H24D | 1.0064 |
C24—H24B | 1.0219 | C24A—H24E | 1.0064 |
C24—H24C | 1.0219 | C24A—H24F | 1.0064 |
| | | |
C18—O4—C19 | 115.14 (19) | C18A—O4A—C19A | 114.90 (18) |
C20—O6—C21 | 120.62 (16) | C20A—O6A—C21A | 120.19 (16) |
C1—N1—C5 | 115.89 (17) | C5A—N1A—C1A | 116.10 (17) |
C6—N2—C9 | 125.43 (18) | C6A—N2A—C9A | 125.85 (18) |
C6—N2—C7 | 117.53 (19) | C6A—N2A—C7A | 117.18 (19) |
C9—N2—C7 | 116.73 (16) | C9A—N2A—C7A | 116.58 (16) |
C11—N3—C14 | 118.30 (18) | C11A—N3A—C12A | 123.98 (17) |
C11—N3—C12 | 123.74 (19) | C11A—N3A—C14A | 118.70 (17) |
C14—N3—C12 | 117.95 (17) | C12A—N3A—C14A | 117.20 (16) |
C20—N4—C17 | 120.59 (18) | C20A—N4A—C17A | 119.74 (18) |
C20—N4—H4A | 119.7 | C20A—N4A—H4AB | 120.1 |
C17—N4—H4A | 119.7 | C17A—N4A—H4AB | 120.1 |
N1—C1—C2 | 124.0 (2) | N1A—C1A—C2A | 124.01 (19) |
N1—C1—C11 | 116.15 (17) | N1A—C1A—C11A | 114.46 (16) |
C2—C1—C11 | 119.80 (18) | C2A—C1A—C11A | 121.53 (18) |
C3—C2—C1 | 119.30 (19) | C1A—C2A—C3A | 119.48 (19) |
C3—C2—H2A | 120.4 | C1A—C2A—H2AA | 120.3 |
C1—C2—H2A | 120.4 | C3A—C2A—H2AA | 120.3 |
C2—C3—C4 | 117.33 (18) | C4A—C3A—C2A | 117.29 (18) |
C2—C3—C16 | 120.76 (18) | C4A—C3A—C16A | 122.30 (19) |
C4—C3—C16 | 121.9 (2) | C2A—C3A—C16A | 120.39 (18) |
C5—C4—C3 | 119.0 (2) | C3A—C4A—C5A | 119.1 (2) |
C5—C4—H4B | 120.5 | C3A—C4A—H4AA | 120.5 |
C3—C4—H4B | 120.5 | C5A—C4A—H4AA | 120.5 |
N1—C5—C4 | 124.37 (19) | N1A—C5A—C4A | 123.92 (19) |
N1—C5—C6 | 117.04 (17) | N1A—C5A—C6A | 116.77 (16) |
C4—C5—C6 | 118.47 (19) | C4A—C5A—C6A | 119.16 (18) |
O1—C6—N2 | 123.29 (19) | O1A—C6A—N2A | 123.06 (19) |
O1—C6—C5 | 118.64 (17) | O1A—C6A—C5A | 118.50 (17) |
N2—C6—C5 | 118.1 (2) | N2A—C6A—C5A | 118.4 (2) |
N2—C7—C8 | 112.41 (17) | N2A—C7A—C8A | 112.34 (17) |
N2—C7—H7A | 109.1 | N2A—C7A—H7AA | 109.1 |
C8—C7—H7A | 109.1 | C8A—C7A—H7AA | 109.1 |
N2—C7—H7B | 109.1 | N2A—C7A—H7AB | 109.1 |
C8—C7—H7B | 109.1 | C8A—C7A—H7AB | 109.1 |
H7A—C7—H7B | 107.9 | H7AA—C7A—H7AB | 107.9 |
C7—C8—H8A | 109.5 | C7A—C8A—H8AA | 109.5 |
C7—C8—H8B | 109.5 | C7A—C8A—H8AB | 109.5 |
H8A—C8—H8B | 109.5 | H8AA—C8A—H8AB | 109.5 |
C7—C8—H8C | 109.5 | C7A—C8A—H8AC | 109.5 |
H8A—C8—H8C | 109.5 | H8AA—C8A—H8AC | 109.5 |
H8B—C8—H8C | 109.5 | H8AB—C8A—H8AC | 109.5 |
N2—C9—C10 | 112.59 (19) | N2A—C9A—C10A | 113.55 (18) |
N2—C9—H9A | 109.1 | N2A—C9A—H9AA | 108.9 |
C10—C9—H9A | 109.1 | C10A—C9A—H9AA | 108.9 |
N2—C9—H9B | 109.1 | N2A—C9A—H9AB | 108.9 |
C10—C9—H9B | 109.1 | C10A—C9A—H9AB | 108.9 |
H9A—C9—H9B | 107.8 | H9AA—C9A—H9AB | 107.7 |
C9—C10—H10A | 109.5 | C9A—C10A—H10D | 109.5 |
C9—C10—H10B | 109.5 | C9A—C10A—H10E | 109.5 |
H10A—C10—H10B | 109.5 | H10D—C10A—H10E | 109.5 |
C9—C10—H10C | 109.5 | C9A—C10A—H10F | 109.5 |
H10A—C10—H10C | 109.5 | H10D—C10A—H10F | 109.5 |
H10B—C10—H10C | 109.5 | H10E—C10A—H10F | 109.5 |
O2—C11—N3 | 123.1 (2) | O2A—C11A—N3A | 123.07 (19) |
O2—C11—C1 | 119.52 (17) | O2A—C11A—C1A | 120.27 (17) |
N3—C11—C1 | 117.40 (18) | N3A—C11A—C1A | 116.66 (17) |
N3—C12—C13 | 113.40 (19) | N3A—C12A—C13A | 113.36 (19) |
N3—C12—H12A | 108.9 | N3A—C12A—H12C | 108.9 |
C13—C12—H12A | 108.9 | C13A—C12A—H12C | 108.9 |
N3—C12—H12B | 108.9 | N3A—C12A—H12D | 108.9 |
C13—C12—H12B | 108.9 | C13A—C12A—H12D | 108.9 |
H12A—C12—H12B | 107.7 | H12C—C12A—H12D | 107.7 |
C12—C13—H13A | 109.5 | C12A—C13A—H13D | 109.5 |
C12—C13—H13B | 109.5 | C12A—C13A—H13E | 109.5 |
H13A—C13—H13B | 109.5 | H13D—C13A—H13E | 109.5 |
C12—C13—H13C | 109.5 | C12A—C13A—H13F | 109.5 |
H13A—C13—H13C | 109.5 | H13D—C13A—H13F | 109.5 |
H13B—C13—H13C | 109.5 | H13E—C13A—H13F | 109.5 |
N3—C14—C15 | 113.42 (19) | N3A—C14A—C15A | 114.08 (16) |
N3—C14—H14A | 108.9 | N3A—C14A—H14C | 108.7 |
C15—C14—H14A | 108.9 | C15A—C14A—H14C | 108.7 |
N3—C14—H14B | 108.9 | N3A—C14A—H14D | 108.7 |
C15—C14—H14B | 108.9 | C15A—C14A—H14D | 108.7 |
H14A—C14—H14B | 107.7 | H14C—C14A—H14D | 107.6 |
C14—C15—H15A | 109.5 | C14A—C15A—H15D | 109.5 |
C14—C15—H15B | 109.5 | C14A—C15A—H15E | 109.5 |
H15A—C15—H15B | 109.5 | H15D—C15A—H15E | 109.5 |
C14—C15—H15C | 109.5 | C14A—C15A—H15F | 109.5 |
H15A—C15—H15C | 109.5 | H15D—C15A—H15F | 109.5 |
H15B—C15—H15C | 109.5 | H15E—C15A—H15F | 109.5 |
C3—C16—C17 | 111.03 (16) | N4A—C17A—C18A | 114.90 (17) |
C3—C16—H16A | 109.4 | N4A—C17A—C16A | 112.08 (16) |
C17—C16—H16A | 109.4 | C18A—C17A—C16A | 109.45 (15) |
C3—C16—H16B | 109.4 | N4A—C17A—H17B | 106.6 |
C17—C16—H16B | 109.4 | C18A—C17A—H17B | 106.6 |
H16A—C16—H16B | 108.0 | C16A—C17A—H17B | 106.6 |
N4—C17—C18 | 114.82 (17) | C3A—C16A—C17A | 110.23 (15) |
N4—C17—C16 | 111.56 (16) | C3A—C16A—H16C | 109.6 |
C18—C17—C16 | 109.14 (15) | C17A—C16A—H16C | 109.6 |
N4—C17—H17A | 107.0 | C3A—C16A—H16D | 109.6 |
C18—C17—H17A | 107.0 | C17A—C16A—H16D | 109.6 |
C16—C17—H17A | 107.0 | H16C—C16A—H16D | 108.1 |
O3—C18—O4 | 123.51 (19) | O3A—C18A—O4A | 123.57 (18) |
O3—C18—C17 | 123.4 (2) | O3A—C18A—C17A | 123.07 (19) |
O4—C18—C17 | 113.08 (18) | O4A—C18A—C17A | 113.28 (18) |
O4—C19—H19A | 109.5 | O4A—C19A—H19D | 109.5 |
O4—C19—H19B | 109.5 | O4A—C19A—H19E | 109.5 |
H19A—C19—H19B | 109.5 | H19D—C19A—H19E | 109.5 |
O4—C19—H19C | 109.5 | O4A—C19A—H19F | 109.5 |
H19A—C19—H19C | 109.5 | H19D—C19A—H19F | 109.5 |
H19B—C19—H19C | 109.5 | H19E—C19A—H19F | 109.5 |
O5—C20—O6 | 125.87 (19) | O5A—C20A—O6A | 125.47 (18) |
O5—C20—N4 | 124.5 (2) | O5A—C20A—N4A | 124.8 (2) |
O6—C20—N4 | 109.60 (18) | O6A—C20A—N4A | 109.74 (18) |
O6—C21—C23 | 101.79 (16) | O6A—C21A—C23A | 102.76 (17) |
O6—C21—C24 | 109.04 (16) | O6A—C21A—C22A | 109.69 (18) |
C23—C21—C24 | 111.7 (2) | C23A—C21A—C22A | 110.1 (2) |
O6—C21—C22 | 111.36 (18) | O6A—C21A—C24A | 110.66 (16) |
C23—C21—C22 | 109.59 (18) | C23A—C21A—C24A | 110.9 (2) |
C24—C21—C22 | 112.88 (19) | C22A—C21A—C24A | 112.37 (19) |
C21—C22—H22A | 109.5 | C21A—C22A—H22D | 109.5 |
C21—C22—H22B | 109.5 | C21A—C22A—H22E | 109.5 |
H22A—C22—H22B | 109.5 | H22D—C22A—H22E | 109.5 |
C21—C22—H22C | 109.5 | C21A—C22A—H22F | 109.5 |
H22A—C22—H22C | 109.5 | H22D—C22A—H22F | 109.5 |
H22B—C22—H22C | 109.5 | H22E—C22A—H22F | 109.5 |
C21—C23—H23A | 109.5 | C21A—C23A—H23D | 109.5 |
C21—C23—H23B | 109.5 | C21A—C23A—H23E | 109.5 |
H23A—C23—H23B | 109.5 | H23D—C23A—H23E | 109.5 |
C21—C23—H23C | 109.5 | C21A—C23A—H23F | 109.5 |
H23A—C23—H23C | 109.5 | H23D—C23A—H23F | 109.5 |
H23B—C23—H23C | 109.5 | H23E—C23A—H23F | 109.5 |
C21—C24—H24A | 109.5 | C21A—C24A—H24D | 109.5 |
C21—C24—H24B | 109.5 | C21A—C24A—H24E | 109.5 |
H24A—C24—H24B | 109.5 | H24D—C24A—H24E | 109.5 |
C21—C24—H24C | 109.5 | C21A—C24A—H24F | 109.5 |
H24A—C24—H24C | 109.5 | H24D—C24A—H24F | 109.5 |
H24B—C24—H24C | 109.5 | H24E—C24A—H24F | 109.5 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2a···O1i | 1.08 | 2.42 | 3.234 (3) | 131 |
N4—H4a···O2ii | 1.01 | 2.05 | 2.899 (2) | 140 |
C4—H4b···O2ii | 1.08 | 2.45 | 3.391 (3) | 145 |
C12a—H12c···O3iii | 1.06 | 2.56 | 3.350 (3) | 131 |
C8—H8b···O4iv | 1.06 | 2.46 | 3.504 (3) | 169 |
C7—H7b···O5iv | 1.06 | 2.47 | 3.428 (3) | 151 |
C9—H9a···N1 | 1.06 | 2.56 | 3.041 (3) | 107 |
C17—H17a···O5 | 1.06 | 2.32 | 2.802 (2) | 106 |
C22—H22c···O5 | 1.06 | 2.33 | 2.917 (3) | 113 |
C24—H24a···O5 | 1.06 | 2.53 | 3.123 (3) | 114 |
C2a—H2aa···O1av | 1.08 | 2.24 | 3.131 (3) | 138 |
N4a—H4ab···O2avi | 1.01 | 2.10 | 2.949 (2) | 141 |
C8a—H8ab···O4aiv | 1.06 | 2.39 | 3.451 (3) | 180 |
C9a—H9aa···N1a | 1.06 | 2.56 | 3.021 (3) | 106 |
C17a—H17b···O5a | 1.06 | 2.29 | 2.784 (2) | 107 |
C22a—H22f···O5a | 1.06 | 2.39 | 2.971 (3) | 113 |
C24a—H24d···O5a | 1.06 | 2.42 | 3.032 (3) | 116 |
Symmetry codes: (i) −x, y−1/2, −z+1; (ii) −x, y+1/2, −z+1; (iii) x, y, z+1; (iv) x−1, y, z; (v) −x, y−1/2, −z+2; (vi) −x, y+1/2, −z+2. |
Experimental details
Crystal data |
Chemical formula | C24H38N4O6 |
Mr | 478.58 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 115 |
a, b, c (Å) | 11.144 (2), 13.047 (3), 18.429 (4) |
β (°) | 98.19 (3) |
V (Å3) | 2652.2 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.4 × 0.4 × 0.15 |
|
Data collection |
Diffractometer | Stoe IPDS diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 38694, 6220, 5570 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.660 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.057, 2.90 |
No. of reflections | 6220 |
No. of parameters | 663 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.24, −0.20 |
Selected geometric parameters (Å, º) topO1—C6 | 1.229 (3) | O6—C20 | 1.343 (3) |
O2—C11 | 1.239 (3) | N2—C6 | 1.350 (2) |
O3—C18 | 1.199 (3) | N3—C11 | 1.340 (2) |
O4—C19 | 1.454 (3) | N4—C20 | 1.357 (3) |
O5—C20 | 1.220 (3) | C2—C3 | 1.387 (3) |
| | | |
O1—C6—N2 | 123.29 (19) | O5—C20—N4 | 124.5 (2) |
O2—C11—N3 | 123.1 (2) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2a···O1i | 1.083 | 2.422 | 3.234 (3) | 131 |
N4—H4a···O2ii | 1.009 | 2.050 | 2.899 (2) | 140 |
C4—H4b···O2ii | 1.083 | 2.445 | 3.391 (3) | 145 |
C12a—H12c···O3iii | 1.059 | 2.559 | 3.350 (3) | 131 |
C8—H8b···O4iv | 1.059 | 2.457 | 3.504 (3) | 169 |
C7—H7b···O5iv | 1.059 | 2.465 | 3.428 (3) | 151 |
C9—H9a···N1 | 1.059 | 2.564 | 3.041 (3) | 107 |
C17—H17a···O5 | 1.059 | 2.323 | 2.802 (2) | 106 |
C22—H22c···O5 | 1.059 | 2.330 | 2.917 (3) | 113 |
C24—H24a···O5 | 1.059 | 2.531 | 3.123 (3) | 114 |
C2a—H2aa···O1av | 1.083 | 2.243 | 3.131 (3) | 138 |
N4a—H4ab···O2avi | 1.009 | 2.097 | 2.949 (2) | 141 |
C8a—H8ab···O4aiv | 1.059 | 2.392 | 3.451 (3) | 180 |
C9a—H9aa···N1a | 1.059 | 2.557 | 3.021 (3) | 106 |
C17a—H17b···O5a | 1.059 | 2.287 | 2.784 (2) | 107 |
C22a—H22f···O5a | 1.059 | 2.386 | 2.971 (3) | 113 |
C24a—H24d···O5a | 1.059 | 2.416 | 3.032 (3) | 116 |
Symmetry codes: (i) −x, y−1/2, −z+1; (ii) −x, y+1/2, −z+1; (iii) x, y, z+1; (iv) x−1, y, z; (v) −x, y−1/2, −z+2; (vi) −x, y+1/2, −z+2. |
Lanthanide coordination chemistry is essentially motivated by applications in biology and medicine, mainly for analysis (Parker, 2000) and diagnosis (Yam & Lo, 1999) but also for therapeutics (Guo & Sadler, 1999). These applications require a precise control of the Ln(III) inner coordination and therefore adequate ligands, which preserve, or preferably enhance, the physicochemical properties of the metal ion.
We have recently turned our attention to mononuclear triple helical lanthanide complexes with chiral tridentate aromatic ligands for the purpose of studying the influence of helical wrapping on diastereomeric induction, thermodynamic properties and energy transfer processes. Related helical induction in the ground state requires diastereomeric resolution, and we have recently synthesized the title compound, (I), bearing a chiral group in the 4-position of the pyridine ring. We have also studied the interaction of (I)? with trivalent lanthanide ions (Muller et al. 2001a). Indeed, interest in synthesizing chiral helices is growing, because they may be incorporated in, for example, biomedical materials and used as probes for chirality sensing of biological substances (Tsukube & Shinoda, 2002; Govenlock et al., 1999).
NMR analysis of L4 is consistent with the presence of a single species with a tertendate binding unit in a trans–trans conformation. The absolute configuration of the asymmetric C atom is retained, as demonstrated by the value of the specific optical rotation, [α]25D = −3.5 (4) ° dm2 mol−1 (Muller et al., 2001a). We have determined the crystal structure of L4 in order to confirm that the trans–trans conformation observed in solution also prevails in the solid state.
The structure contains two independent molecules, one of which is depicted in Fig. 1. These are roughly equivalent by a translation of 1/2 c. A normal probability plot (NPP) (Abrahams & Keve, 1971) involving 34 distances and 45 angles that are analogous in the two molecules is linear, with a slope of 1.60 and a δmexp axis intercept of −0.05. The linearity implies that these geometrical quantities differ only in a stochastic way bewteen the two molecules, while the non-unit slope points to an underestimation of the variances. The molecules do, however, distinguish themselves in their torsion and dihedral angles. In each molecule there are seven subsets of atoms, defining planes of which the worst mean deviation is that of the C3a/C16a/C17a/C18a plane (0.06 Å). These planes are the pyridine ring, the C5/C6/C7/C9/N2/O1 and C1/C11/C12/C14/N3/O2 carboxamide groups, the C3/C16/C17/C18 butane skeleton, the C17/C18/C19/N4/O3/O4 amino acetic acid methyl ester group, the C20/C21/O5/O6 aminocarboxylate group, and the C17/C20/N4 azapropane group. The angles between the planes of the last two groups are 16.8 (2) and 12.1 (4)° for the two molecules. Since distances and angles between analogous atoms in the aminocarboxylate and carboxamide groups are very similar and since the latter are perfectly planar, the values of these angles must be due to steric requirements, notwithstanding the intramolecular O···H—C hydrogen bonds (Table 2) that further favour the planar configuration. Furthermore, the C═O and C═N distances (Table 1) indicate some degree of delocalization in the amide groups.
The structure is stabilized by a wealth of intermolecular hydrogen bonds forming a three-dimensional network (Fig. 2 and Table 2). The strongest of these (O···H—N) form [010] chains of molecules, each consecutive pair of? molecules being related by {C2y|0 1/2 0}. These chains in turn are linked by weak O···H—C hydrogen bonds to form (a,b) layers that are finally connected by even weaker O···H—C bonds to complete the three-dimensional web. The strength of the hydrogen bonds is in perfect accord with the observed growth speeds of the crystal faces, viz. v010 >> v101 > v100 (L4 grows as [010] joists). Actually, none of the hydrogen bonds (Table 2) rigorously qualifies according to the Desiraju (1996) criteria 2.0 < d < 2.3 Å and 150 < θ < 180 °, but it seems hard to imagine that these interactions do not determine the packing of this structure. It is surprising that not even the C17—H17···O5 bond succeeds in imposing a planar C17/N4/C20/O5/O6/C21 group, although such a conformation has been observed, for example, in 11-methoxy-15,16-dihydroxycyclopenta(a)phenantrene-17-one (Desiraju et al. 1993). The steric factor warping the azapropane and aminocarboxylate groups is finally demonstrated by the asymmetry of the C22—H22···O5 and C24—H24···O5 bonds and the C23—C21—O6—C20 torsion angle of −167.88 (18)°.
The average bond lengths fall well within the ranges listed in the International Tables for Crystallography (1992, Vol. C). Following the example of Desiraju (1996), normalized N—H and C—H distances were used for the compilation of Table 2, although the refined distances reached satisfactory values, for example, 1.004 Å for the mean C—H bond. Despite the presence of several O and N atoms and the good quality of the data, the structure does not possess an enantiomorph-discriminating capacity that is high enough to furnish the absolute configuration of atom C17. However, since the synthesis involved no chirality-inverting step, atoms C17a and C17b are likely to be S.
The structure shows that the trans–trans configuration of atoms O1 and O2 prevails in the solid state. This fact is probably due to a minimization of the steric repulsion of the two carbamate groups and the chiral substituent grafted on the 4-position of the pyridine ring. During complexation this configuration changes to cis–cis.
On the other hand, chiro-optical data clearly suggest the helical wrapping of the three ligand strands around the LnIII ions. This fact is confirmed by the specific rotary dispersion measurements (Muller et al., 2001a) but is contrary to the situation observed when bulky neopentyl subsituents were grafted on to the benzimidazole sidearms of a 2,6-bis(1-S-neopentylbenzimidazol-2-yl)pyridine ligand (Muller et al., 2001b). Moreover, the circularly polarized luminescence of the EuIII triple helical complex displays a weak effect, pointing to a small diastereomeric excess in solution, similar to that recently observed for the corresponding complex with 2,6-bis[(1-methylbenzimidazol-2-yl)]-4-(neopentylester)pyridine, which also bears a chiral group in the 4-position of the central pyridine (Muller et al., 2002). Therefore, the diastereomeric induction resulting from the influence of the helical wrapping may be modulated by varying the chiral substituent in the 4-position of the pyridine ring, as may? the electronic and photophysical properties. The combination of these properties opens new perspectives for the design of lanthanide triple helical complexes acting as probes for chiral recognition.