Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270102013665/sk1577sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270102013665/sk1577IVsup2.hkl |
CCDC reference: 195622
A solution of diazomethane (1.2 equivalents) in diethyl ether was added to solid α-lapachone, (I). After 48 h at 277 K, the reaction mixture was rotary evaporated, column chromatographed on silica gel and recrystallized from acetone. The yield of (IV) was 95% (m.p. 391–393 K). Spectroscopic analysis: 1H NMR (300 MHz, CDCl3, δ, p.p.m.): 1.36 (3H, s), 1.37 (3H, s), 1.76 (1H, ddd, J = 2.4, 6.6, 7.2 Hz), 1.83 (1H, ddd, J = 2.4, 6.6, 7.5 Hz), 2.39 (1H, ddd, J = 2.1, 6.6, 7.5 Hz), 2.59 (1H, ddd, J = 2.1, 6.3, 7.2 Hz), 3.29 (1H, d, J = 6.9 Hz), 3.65 (1H, d, J = 6.9 Hz), 7.23 (1H, dd, J = 1.5, 7.5 Hz), 7.46 (1H, dd, J = 1.2, 7.5 Hz), 7.54 (1H, dd, J = 1.2, 7.5 Hz), 8.19 (1H, dd, J = 1.5, 7.5 Hz); 13C NMR (75 MHz, CDCl3, δ, p.p.m.): 15.9 (CH2), 25.7 (CH3), 31.2 (CH2), 51.3 (C), 56.8 (CH2), 77.3 (C), 113.8 (C), 121.9 (CH), 125.7 (CH), 127.8 (CH), 131.4 (CH), 131.9, 136.4 (C), 163.2 (C), 182.9 (C); IR (cm-1): 3063 (C—H, epoxide), 2928–2983 (C—H), 1621 (C═O), 1575, 1149 (C—O); MS (m/z; low resolution): 200 (100%), 256 (38%), 115 (6%), 223 (5%), 172 (4%); MS (high resolution): M+ 256.10107 (C16H16O3).
Compound (IV) is monoclinic; space group P21/n was uniquely assigned from the systematic absences. All H atoms were treated as riding atoms, with C—H distances of 0.93, 0.97 and 0.96 Å for phenyl, methylene and methyl H, respectively. Conformational and hydrogen-bonding analyses were performed using PLATON (Spek, 2002).
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEX in OSCAIL (McArdle, 1994, 2000) and ORTEPIII for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
C16H16O3 | F(000) = 544 |
Mr = 256.29 | Dx = 1.316 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4478 reflections |
a = 12.2764 (13) Å | θ = 3.4–32.3° |
b = 7.8543 (9) Å | µ = 0.09 mm−1 |
c = 13.6935 (15) Å | T = 292 K |
β = 101.666 (2)° | Block, colourless |
V = 1293.1 (2) Å3 | 0.5 × 0.4 × 0.4 mm |
Z = 4 |
Bruker SMART 1000 CCD area-detector diffractometer | 4627 independent reflections |
Radiation source: fine-focus sealed tube | 2879 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
ϕ and ω scans | θmax = 32.6°, θmin = 3.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −18→9 |
Tmin = 0.826, Tmax = 0.928 | k = −11→11 |
12411 measured reflections | l = −20→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.187 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0895P)2 + 0.2537P] where P = (Fo2 + 2Fc2)/3 |
4627 reflections | (Δ/σ)max < 0.001 |
174 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C16H16O3 | V = 1293.1 (2) Å3 |
Mr = 256.29 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 12.2764 (13) Å | µ = 0.09 mm−1 |
b = 7.8543 (9) Å | T = 292 K |
c = 13.6935 (15) Å | 0.5 × 0.4 × 0.4 mm |
β = 101.666 (2)° |
Bruker SMART 1000 CCD area-detector diffractometer | 4627 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 2879 reflections with I > 2σ(I) |
Tmin = 0.826, Tmax = 0.928 | Rint = 0.040 |
12411 measured reflections |
R[F2 > 2σ(F2)] = 0.059 | 0 restraints |
wR(F2) = 0.187 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.39 e Å−3 |
4627 reflections | Δρmin = −0.23 e Å−3 |
174 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.91113 (14) | 0.7150 (2) | 0.32964 (12) | 0.0511 (4) | |
C2 | 1.02101 (15) | 0.6216 (3) | 0.34855 (13) | 0.0589 (5) | |
H2A | 1.0752 | 0.6889 | 0.3228 | 0.071* | |
H2B | 1.0475 | 0.6091 | 0.4199 | 0.071* | |
C3 | 1.01245 (15) | 0.4477 (2) | 0.30048 (12) | 0.0561 (4) | |
H3A | 1.0864 | 0.4029 | 0.3019 | 0.067* | |
H3B | 0.9742 | 0.3704 | 0.3374 | 0.067* | |
C4 | 0.95008 (11) | 0.45991 (18) | 0.19482 (10) | 0.0385 (3) | |
C5 | 0.96331 (11) | 0.32671 (18) | 0.12563 (10) | 0.0374 (3) | |
C6 | 0.89837 (10) | 0.33837 (16) | 0.02182 (10) | 0.0330 (3) | |
C7 | 0.90309 (12) | 0.20535 (17) | −0.04362 (11) | 0.0417 (3) | |
H7 | 0.9502 | 0.1137 | −0.0233 | 0.050* | |
C8 | 0.83876 (15) | 0.2076 (2) | −0.13830 (12) | 0.0512 (4) | |
H8 | 0.8432 | 0.1187 | −0.1822 | 0.061* | |
C9 | 0.76805 (15) | 0.3416 (2) | −0.16782 (12) | 0.0546 (4) | |
H9 | 0.7226 | 0.3414 | −0.2310 | 0.065* | |
C10 | 0.76406 (13) | 0.4762 (2) | −0.10435 (11) | 0.0472 (4) | |
H10 | 0.7170 | 0.5677 | −0.1254 | 0.057* | |
C11 | 0.83007 (10) | 0.47622 (17) | −0.00882 (10) | 0.0344 (3) | |
C12 | 0.82705 (10) | 0.61994 (17) | 0.05959 (10) | 0.0349 (3) | |
C13 | 0.88514 (11) | 0.59521 (17) | 0.16450 (10) | 0.0354 (3) | |
O1 | 0.86845 (10) | 0.72601 (14) | 0.22208 (8) | 0.0487 (3) | |
O2 | 0.72247 (9) | 0.70902 (14) | 0.04658 (9) | 0.0485 (3) | |
C14 | 0.81423 (14) | 0.79552 (19) | 0.02145 (13) | 0.0491 (4) | |
H14A | 0.8483 | 0.8862 | 0.0653 | 0.059* | |
H14B | 0.8139 | 0.8135 | −0.0487 | 0.059* | |
O3 | 1.02461 (10) | 0.20459 (16) | 0.15111 (9) | 0.0580 (3) | |
C15 | 0.9240 (2) | 0.8984 (3) | 0.36169 (19) | 0.0861 (7) | |
H15A | 0.9779 | 0.9525 | 0.3301 | 0.129* | |
H15B | 0.9484 | 0.9041 | 0.4328 | 0.129* | |
H15C | 0.8538 | 0.9556 | 0.3426 | 0.129* | |
C16 | 0.82301 (19) | 0.6245 (3) | 0.37286 (17) | 0.0761 (6) | |
H16A | 0.7538 | 0.6846 | 0.3546 | 0.114* | |
H16B | 0.8452 | 0.6210 | 0.4442 | 0.114* | |
H16C | 0.8141 | 0.5105 | 0.3472 | 0.114* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0564 (9) | 0.0538 (9) | 0.0430 (8) | 0.0003 (7) | 0.0100 (6) | −0.0115 (7) |
C2 | 0.0527 (9) | 0.0731 (12) | 0.0464 (9) | 0.0015 (9) | −0.0009 (7) | −0.0129 (8) |
C3 | 0.0583 (9) | 0.0623 (10) | 0.0416 (8) | 0.0191 (8) | −0.0043 (7) | −0.0034 (7) |
C4 | 0.0372 (6) | 0.0395 (7) | 0.0368 (7) | 0.0057 (5) | 0.0029 (5) | −0.0001 (5) |
C5 | 0.0373 (6) | 0.0338 (6) | 0.0398 (7) | 0.0067 (5) | 0.0049 (5) | 0.0040 (5) |
C6 | 0.0348 (5) | 0.0269 (5) | 0.0375 (6) | −0.0004 (4) | 0.0074 (5) | 0.0029 (4) |
C7 | 0.0493 (7) | 0.0274 (6) | 0.0487 (8) | 0.0000 (5) | 0.0104 (6) | 0.0005 (5) |
C8 | 0.0679 (10) | 0.0365 (7) | 0.0475 (8) | −0.0087 (7) | 0.0078 (7) | −0.0073 (6) |
C9 | 0.0648 (10) | 0.0516 (9) | 0.0409 (8) | −0.0069 (8) | −0.0046 (7) | −0.0007 (7) |
C10 | 0.0503 (7) | 0.0425 (8) | 0.0439 (8) | 0.0045 (6) | −0.0022 (6) | 0.0052 (6) |
C11 | 0.0349 (5) | 0.0303 (6) | 0.0372 (6) | −0.0003 (5) | 0.0057 (5) | 0.0039 (5) |
C12 | 0.0349 (5) | 0.0295 (6) | 0.0406 (7) | 0.0055 (5) | 0.0081 (5) | 0.0050 (5) |
C13 | 0.0358 (5) | 0.0332 (6) | 0.0376 (6) | 0.0017 (5) | 0.0085 (5) | −0.0015 (5) |
O1 | 0.0584 (6) | 0.0420 (6) | 0.0451 (6) | 0.0113 (5) | 0.0092 (5) | −0.0072 (4) |
O2 | 0.0424 (5) | 0.0432 (6) | 0.0597 (7) | 0.0148 (4) | 0.0095 (4) | 0.0076 (5) |
C14 | 0.0605 (9) | 0.0328 (7) | 0.0563 (9) | 0.0089 (6) | 0.0170 (7) | 0.0084 (6) |
O3 | 0.0663 (7) | 0.0483 (7) | 0.0540 (7) | 0.0275 (6) | −0.0008 (5) | 0.0030 (5) |
C15 | 0.1047 (18) | 0.0669 (14) | 0.0820 (15) | 0.0018 (13) | 0.0072 (13) | −0.0355 (12) |
C16 | 0.0726 (13) | 0.0943 (17) | 0.0683 (13) | 0.0036 (12) | 0.0302 (10) | 0.0011 (12) |
O1—C1 | 1.4627 (19) | C6—C7 | 1.3852 (19) |
O2—C12 | 1.4412 (15) | C7—C8 | 1.375 (2) |
O2—C14 | 1.416 (2) | C7—H7 | 0.9300 |
O3—C5 | 1.2255 (16) | C8—C9 | 1.372 (2) |
C4—C13 | 1.3430 (18) | C8—H8 | 0.9300 |
C4—C5 | 1.443 (2) | C9—C10 | 1.376 (2) |
C5—C6 | 1.4854 (18) | C9—H9 | 0.9300 |
C6—C11 | 1.3817 (17) | C10—C11 | 1.3926 (18) |
C11—C12 | 1.4721 (19) | C10—H10 | 0.9300 |
C12—C13 | 1.4818 (18) | C12—C14 | 1.4717 (19) |
C1—C15 | 1.505 (3) | C13—O1 | 1.3358 (16) |
C1—C2 | 1.511 (2) | C14—H14A | 0.9700 |
C1—C16 | 1.512 (3) | C14—H14B | 0.9700 |
C2—C3 | 1.510 (3) | C15—H15A | 0.9600 |
C2—H2A | 0.9700 | C15—H15B | 0.9600 |
C2—H2B | 0.9700 | C15—H15C | 0.9600 |
C3—C4 | 1.4969 (19) | C16—H16A | 0.9600 |
C3—H3A | 0.9700 | C16—H16B | 0.9600 |
C3—H3B | 0.9700 | C16—H16C | 0.9600 |
C11—C12—C13 | 116.57 (11) | C8—C7—H7 | 119.7 |
O2—C12—C11 | 115.47 (11) | C6—C7—H7 | 119.7 |
C14—C12—C11 | 120.49 (12) | C9—C8—C7 | 119.75 (14) |
C14—C12—C13 | 117.57 (12) | C9—C8—H8 | 120.1 |
O2—C12—C13 | 115.18 (11) | C7—C8—H8 | 120.1 |
C14—O2—C12 | 61.99 (9) | C8—C9—C10 | 120.30 (14) |
O2—C12—C14 | 58.17 (9) | C8—C9—H9 | 119.9 |
O2—C14—C12 | 59.83 (9) | C10—C9—H9 | 119.9 |
O1—C1—C15 | 103.42 (16) | C9—C10—C11 | 120.33 (14) |
O1—C1—C2 | 109.08 (13) | C9—C10—H10 | 119.8 |
C15—C1—C2 | 112.18 (17) | C11—C10—H10 | 119.8 |
O1—C1—C16 | 106.45 (14) | C6—C11—C10 | 119.17 (13) |
C15—C1—C16 | 112.15 (18) | C6—C11—C12 | 119.97 (11) |
C2—C1—C16 | 112.91 (18) | C10—C11—C12 | 120.86 (12) |
C3—C2—C1 | 112.54 (14) | O1—C13—C4 | 125.34 (12) |
C3—C2—H2A | 109.1 | O1—C13—C12 | 111.73 (11) |
C1—C2—H2A | 109.1 | C4—C13—C12 | 122.87 (12) |
C3—C2—H2B | 109.1 | C13—O1—C1 | 118.84 (12) |
C1—C2—H2B | 109.1 | O2—C14—H14A | 117.8 |
H2A—C2—H2B | 107.8 | C12—C14—H14A | 117.8 |
C4—C3—C2 | 109.89 (14) | O2—C14—H14B | 117.8 |
C4—C3—H3A | 109.7 | C12—C14—H14B | 117.8 |
C2—C3—H3A | 109.7 | H14A—C14—H14B | 114.9 |
C4—C3—H3B | 109.7 | C1—C15—H15A | 109.5 |
C2—C3—H3B | 109.7 | C1—C15—H15B | 109.5 |
H3A—C3—H3B | 108.2 | H15A—C15—H15B | 109.5 |
C13—C4—C5 | 120.63 (12) | C1—C15—H15C | 109.5 |
C13—C4—C3 | 120.35 (13) | H15A—C15—H15C | 109.5 |
C5—C4—C3 | 119.00 (12) | H15B—C15—H15C | 109.5 |
O3—C5—C4 | 121.66 (13) | C1—C16—H16A | 109.5 |
O3—C5—C6 | 120.04 (13) | C1—C16—H16B | 109.5 |
C4—C5—C6 | 118.29 (11) | H16A—C16—H16B | 109.5 |
C11—C6—C7 | 119.79 (12) | C1—C16—H16C | 109.5 |
C11—C6—C5 | 120.94 (12) | H16A—C16—H16C | 109.5 |
C7—C6—C5 | 119.21 (12) | H16B—C16—H16C | 109.5 |
C8—C7—C6 | 120.60 (13) |
Experimental details
Crystal data | |
Chemical formula | C16H16O3 |
Mr | 256.29 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 292 |
a, b, c (Å) | 12.2764 (13), 7.8543 (9), 13.6935 (15) |
β (°) | 101.666 (2) |
V (Å3) | 1293.1 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.5 × 0.4 × 0.4 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.826, 0.928 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12411, 4627, 2879 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.757 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.059, 0.187, 1.01 |
No. of reflections | 4627 |
No. of parameters | 174 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.39, −0.23 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 2000), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEX in OSCAIL (McArdle, 1994, 2000) and ORTEPIII for Windows (Farrugia, 1997), SHELXL97.
O1—C1 | 1.4627 (19) | C4—C5 | 1.443 (2) |
O2—C12 | 1.4412 (15) | C5—C6 | 1.4854 (18) |
O2—C14 | 1.416 (2) | C6—C11 | 1.3817 (17) |
O3—C5 | 1.2255 (16) | C11—C12 | 1.4721 (19) |
C4—C13 | 1.3430 (18) | C12—C13 | 1.4818 (18) |
C11—C12—C13 | 116.57 (11) | O2—C12—C13 | 115.18 (11) |
O2—C12—C11 | 115.47 (11) | C14—O2—C12 | 61.99 (9) |
C14—C12—C11 | 120.49 (12) | O2—C12—C14 | 58.17 (9) |
C14—C12—C13 | 117.57 (12) | O2—C14—C12 | 59.83 (9) |
α-Lapachone, (I), a 1,4-naphthoquinone, and its 1,2-isomer, β-lapachone, (II), are present as minor components of the lapacho tree (Tabebuia avellanedae Lorentz ex. Griseb; Carvalho et al., 1988). Both have important biological activities. Compound (I), for example, is an irreversible inhibitor of topoisomerase II (Krishnan & Bastow, 2000) and has a number of useful pharmacological properties, including acting as a bacteriocide, fungicide and trypanocide. Compound (III) Should this be (II)? has been intensively investigated pharmacologically, e.g. in cancer chemotherapy (Huang & Pardee, 1999) and in interactions with both topoisomerase I (Li et al., 1993) and topomerase II Should this be topoisomerase II? (Frydman et al., 1997). Lapachol, (III), an open-chain isomer of (I), is also biologically active (dos Santos et al., 2001; Austin, 1974; Pinto et al., 1977). Bioactivation of (III) can lead to DNA scission by NADPH-cytochrome P450 reductase (Kumagai et al., 1997; Molina Portela et al., 1996).
Modification of the redox centre of a naphthoquinone can result in a dramatic change in the biological activity. For example, Pinto et al. (1977) demonstrated that transformations of the o-quinone moieties of lapachones resulted in significant changes in trypanocidal activity. Despite the known pharmacological activities of (I), and the interest in related molecules, few procedures for the selective modification of the redox centre have been described to date. As part of our studies in this area, we have investigated the reaction of (I) with diazomethane. This reaction regiospecifically produced the title monoepoxide, (IV). \sch
The structure of (IV) is shown in Fig. 1. From the determination of a centrosymmetric space group, both enantiomers of (IV) are present in the crystal, the chiral centre being C12. Ring B is only slightly distorted from planarity, as shown by the puckering parameters (Cremer & Pople, 1975) Q = 0.0852 (14) Å and ϕ = 51.4 (10)°. This is despite the presence of the formally sp3-hybridized ring atom, C12. As well as being in the six-membered B ring, atom C12 is also part of the three-membered epoxide ring. The near 60° constraint of angles within the three-membered ring results in an opening up of the other angles at C12, including that within the six-membered ring, to near trigonal angles. The C11—C12—C13 bond angle of 116.57 (11)° is indeed very similar in value to the other internal bond angles in ring B, all of which reflect the sp2 hybridization of the ring C atoms. Aromatic ring A, as expected, is planar. The maximum deviation [-0.0981 (14) Å] of atoms from the best plane through rings A and B is exhibited by atom C12. Ring C has a half-chair conformation, with puckering parameters of Q = 0.4502 (19) Å and ϕ = 283.5 (3)°.
Intermolecular interactions in (IV) take the form of π···π and C—H···π interactions; there are no C—H···O hydrogen bonds present. Intermolecular interactions in two polymorphs of compound (III) were reported to include O—H···O hydrogen bonding as well as π···π interactions (Larsen et al., 1992). In two polymorphs of the enol, (III), the intermolecular interactions include O—H···O hydrogen bonding as well as π···π interactions (Larsen et al., 1992).
Molecules of (IV) at (x,y,z) and (2 - x, 1 - y, -z) form π···π stacking interactions involving the A and B rings. The B rings in the two molecules are parallel, with an interplanar spacing of 3.54 Å; with a distance between the ring centroids of 4.05 Å, the offset of the centroids is 1.98 Å. The angle between the planes of ring A at (x,y,z) and ring Bi is 5.39°, with a distance between the ring centroids of 3.74 Å [symmetry code: (i) 2 - x, 1 - y, -z]. The perpendicular distances of the centroids, Cg(A) and Cg(B), from the symmetry-related centroids, Cg(B)i and Cg(A)i, are 3.66 and 3.58 Å, respectively, with the interactions forming dimers centred on (1,1/2,0). These are shown in Fig. 2. Rings A and Ai are necessarily parallel, with an interplanar separation of 3.49 Å. Here, however, the distance between the ring centroids is 4.86 Å, so that the offset of the centroids is too long for interaction, at 3.39 Å.
The C—H···π interactions involve methyl H atoms on ring C in molecules at (x,y,z) and the centroid of ring B of molecules at (3/2 - x, 1/2 + y, 1/2 - z), with parameters for C15—H15C···Cg(B) of H···Cg 3.32 Å, C—H···Cg 139.4° and C···Cg 4.093 (3) Å, and for C16—H16A···Cg(B) of H···Cg 3.04 Å, C—H···Cg 146.4° and C···Cg 3.879 (2) Å.
As far as we are aware, (IV) is the first spiro-oxiran derivative of a p-quinone to be reported to date. The regiospecificity of the reaction between diazomethane and (I) clearly shows that the enhanced electrophilic character of the carbonyl C12 atom compared with that of atom C5 far outweighs the greater steric hindrance at the C12—O5 Please clarify - there is no atom O5. Should it be O2? carbonyl group resulting from the neighbouring methyl groups in ring C.