The morpholine ring of the title dione, C13H15NO3, shows a boat conformation that is distorted towards a twist-boat, with the boat ends being the two Csp3 atoms of the ring. The benzyl substituent is in the favoured `exo' position. In the monothione derivative, (±)-6-benzyl-3,3-dimethyl-5-thioxomorpholin-2-one, C13H15NO2S, this ring has a much flatter conformation that is midway between a boat and an envelope, with the dimethyl end being almost planar. The orientation of the benzyl group is `endo'. The dithione derivative, (±)-6-benzyl-3,3-dimethylmorpholine-2,5-dithione, C13H15NOS2, has two symmetry-independent molecules, which show different puckering of the morpholine ring. One molecule has a flattened envelope conformation distorted towards a screw-boat, while the conformation in the other molecule is similar to that in the monothione derivative. Intermolecular hydrogen bonds link the molecules in the three compounds, respectively, into centrosymmetric dimers, infinite chains, and dimers made up of one of each of the symmetry-independent molecules.
Supporting information
CCDC references: 164680; 164681; 164682
Compound (III) was obtained in 92% yield by the reaction of
D,L-phenyllactic acid, (I) (408 mg, 2.46 mmol), and
2,2,N-trimethyl-N-phenyl-2H-azirin-3-amine, (II) (472 mg,
2.71 mmol), in acetonitrile (20 ml) at room temperature following a known
protocol (Obrecht & Heimgartner, 1987). Treatment of a solution of (III) (2.19 g, 6.44 mmol) in toluene (300 ml) at 373 K with dry HCl gas for 15 min
yielded, after chromatography (silica gel, dichloromethane/diethylether 6:1)
and crystallization from diethylether, compound (IV) in 27% yield as
colourless plates (m.p. 437–438 K). Lawesson reagent (Scheibye et al.,
1978) (240 mg, 0.59 mmol) was added to a solution of (IV) (276 mg, 1.19 mmol)
in toluene (15 ml), and the mixture was heated to 373 K for 30 min. After
chromatography (silica gel, dichloromethane/hexane 3:2) and crystallization
from dichloromethane/diethylether, compound (V) was obtained in 96% yield as
colourless needles (m.p. 448–449 K). Heating a mixture of (V) (95 mg, 0.38 mmol) and Lawesson reagent (3.84 mg, 0.95 mmol) in toluene (10 ml) for 2 d
under reflux led, after chromatographic separation (silica gel,
dichloromethane/hexane 1:1), to compound (VI) in 28% yield as yellow prisms
(m.p. 396–397 K). Suitable single crystals of (VI) were obtained by
recrystallization from diethylether/dichloromethane/hexane.
For each compound, the methyl H atoms were constrained to an ideal geometry with
Uiso(H) = 1.5Ueq(C), but were allowed to rotate freely about
the C—C bonds. The positions of the amino H atoms were refined freely along
with individual isotropic displacement parameters. All other H atoms were
placed in geometrically idealized positions and constrained to ride on their
parent atoms with Uiso(H) = 1.2Ueq(C). For (V), the ψ-scans
for three reflections showed a more severe absorption profile than that which
is theoretically predicted and this is attributed to the anisotropic shape of
the crystal. A test refinement using uncorrected reflection data produced
virtually identical results.
For all compounds, data collection: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1991); cell refinement: MSC/AFC Diffractometer Control Software; data reduction: TEXSAN (Molecular Structure Corporation, 1999). Program(s) used to solve structure: SHELXS97 (Sheldrick, 1997) for (IV); SIR92 (Altomare et al., 1994) for (V), (VI). For all compounds, program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2001).
(IV) 6-benzyl-3,3-dimethylmorpholine-2,5-dione
top
Crystal data top
C13H15NO3 | F(000) = 248 |
Mr = 233.27 | Dx = 1.281 Mg m−3 |
Triclinic, P1 | Melting point = 437–438 K |
a = 5.699 (2) Å | Mo Kα radiation, λ = 0.71069 Å |
b = 10.347 (3) Å | Cell parameters from 25 reflections |
c = 11.327 (4) Å | θ = 19.0–20.0° |
α = 67.51 (2)° | µ = 0.09 mm−1 |
β = 80.38 (3)° | T = 173 K |
γ = 80.35 (3)° | Plate, colourless |
V = 604.5 (4) Å3 | 0.50 × 0.38 × 0.12 mm |
Z = 2 | |
Data collection top
Rigaku AFC-5R diffractometer | Rint = 0.025 |
Radiation source: Rigaku rotating anode generator | θmax = 27.5°, θmin = 3.4° |
Graphite monochromator | h = −7→7 |
ω–2θ scans | k = −13→0 |
2927 measured reflections | l = −14→13 |
2773 independent reflections | 3 standard reflections every 150 reflections |
1859 reflections with I > 2σ(I) | intensity decay: none |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.130 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.053P)2 + 0.1854P] where P = (Fo2 + 2Fc2)/3 |
2773 reflections | (Δ/σ)max = 0.001 |
160 parameters | Δρmax = 0.27 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
Crystal data top
C13H15NO3 | γ = 80.35 (3)° |
Mr = 233.27 | V = 604.5 (4) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.699 (2) Å | Mo Kα radiation |
b = 10.347 (3) Å | µ = 0.09 mm−1 |
c = 11.327 (4) Å | T = 173 K |
α = 67.51 (2)° | 0.50 × 0.38 × 0.12 mm |
β = 80.38 (3)° | |
Data collection top
Rigaku AFC-5R diffractometer | Rint = 0.025 |
2927 measured reflections | 3 standard reflections every 150 reflections |
2773 independent reflections | intensity decay: none |
1859 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.130 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.27 e Å−3 |
2773 reflections | Δρmin = −0.23 e Å−3 |
160 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.4371 (2) | 0.10417 (12) | 0.63704 (12) | 0.0321 (3) | |
O2 | 0.7608 (2) | 0.11627 (14) | 0.50074 (14) | 0.0411 (4) | |
O5 | −0.0837 (3) | 0.34956 (14) | 0.63550 (14) | 0.0520 (5) | |
N4 | 0.2406 (3) | 0.36142 (15) | 0.48846 (14) | 0.0283 (3) | |
H4 | 0.194 (4) | 0.451 (2) | 0.447 (2) | 0.043 (6)* | |
C2 | 0.5594 (3) | 0.16503 (17) | 0.52203 (17) | 0.0273 (4) | |
C3 | 0.4341 (3) | 0.29250 (17) | 0.42359 (16) | 0.0244 (4) | |
C5 | 0.1008 (3) | 0.29338 (18) | 0.59202 (17) | 0.0331 (4) | |
C6 | 0.1783 (3) | 0.13724 (18) | 0.65703 (17) | 0.0307 (4) | |
H6 | 0.0985 | 0.0827 | 0.6221 | 0.037* | |
C7 | 0.3359 (3) | 0.24227 (19) | 0.33272 (17) | 0.0322 (4) | |
H71 | 0.2569 | 0.3232 | 0.2676 | 0.048* | |
H72 | 0.2199 | 0.1755 | 0.3820 | 0.048* | |
H73 | 0.4680 | 0.1959 | 0.2904 | 0.048* | |
C8 | 0.6138 (3) | 0.39764 (19) | 0.34989 (19) | 0.0357 (4) | |
H81 | 0.7442 | 0.3541 | 0.3042 | 0.054* | |
H82 | 0.6793 | 0.4253 | 0.4103 | 0.054* | |
H83 | 0.5335 | 0.4811 | 0.2878 | 0.054* | |
C9 | 0.1099 (4) | 0.0907 (2) | 0.80091 (18) | 0.0471 (6) | |
H91 | 0.1972 | 0.1411 | 0.8354 | 0.057* | |
H92 | −0.0636 | 0.1186 | 0.8177 | 0.057* | |
C10 | 0.1624 (3) | −0.06485 (18) | 0.87193 (16) | 0.0308 (4) | |
C11 | 0.3570 (4) | −0.1186 (2) | 0.94168 (18) | 0.0372 (5) | |
H11 | 0.4629 | −0.0565 | 0.9410 | 0.045* | |
C12 | 0.4007 (4) | −0.2604 (2) | 1.01209 (19) | 0.0421 (5) | |
H12 | 0.5341 | −0.2951 | 1.0603 | 0.050* | |
C13 | 0.2510 (4) | −0.3511 (2) | 1.01230 (19) | 0.0422 (5) | |
H13 | 0.2787 | −0.4488 | 1.0614 | 0.051* | |
C14 | 0.0603 (4) | −0.2996 (2) | 0.9409 (2) | 0.0468 (5) | |
H14 | −0.0417 | −0.3626 | 0.9393 | 0.056* | |
C15 | 0.0158 (4) | −0.1580 (2) | 0.87165 (19) | 0.0399 (5) | |
H15 | −0.1173 | −0.1240 | 0.8232 | 0.048* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0329 (7) | 0.0264 (6) | 0.0288 (6) | 0.0042 (5) | −0.0046 (5) | −0.0038 (5) |
O2 | 0.0263 (7) | 0.0353 (7) | 0.0512 (9) | 0.0046 (6) | −0.0026 (6) | −0.0083 (7) |
O5 | 0.0594 (10) | 0.0288 (7) | 0.0400 (8) | 0.0160 (7) | 0.0195 (7) | −0.0009 (6) |
N4 | 0.0347 (8) | 0.0184 (7) | 0.0246 (7) | 0.0050 (6) | 0.0020 (6) | −0.0055 (6) |
C2 | 0.0266 (9) | 0.0239 (8) | 0.0309 (9) | 0.0000 (7) | −0.0052 (7) | −0.0098 (7) |
C3 | 0.0246 (8) | 0.0210 (8) | 0.0249 (8) | 0.0010 (6) | 0.0002 (6) | −0.0080 (6) |
C5 | 0.0395 (10) | 0.0242 (9) | 0.0271 (9) | 0.0068 (8) | 0.0030 (8) | −0.0070 (7) |
C6 | 0.0341 (9) | 0.0236 (8) | 0.0272 (9) | 0.0050 (7) | 0.0033 (7) | −0.0077 (7) |
C7 | 0.0367 (10) | 0.0311 (9) | 0.0288 (9) | −0.0010 (8) | −0.0038 (7) | −0.0119 (8) |
C8 | 0.0339 (10) | 0.0283 (9) | 0.0399 (10) | −0.0055 (8) | 0.0006 (8) | −0.0081 (8) |
C9 | 0.0725 (15) | 0.0259 (10) | 0.0300 (10) | 0.0051 (10) | 0.0101 (10) | −0.0068 (8) |
C10 | 0.0408 (10) | 0.0243 (8) | 0.0212 (8) | 0.0009 (7) | 0.0062 (7) | −0.0075 (7) |
C11 | 0.0461 (11) | 0.0377 (10) | 0.0317 (10) | −0.0124 (9) | −0.0005 (8) | −0.0153 (9) |
C12 | 0.0435 (11) | 0.0463 (12) | 0.0305 (10) | 0.0010 (9) | −0.0109 (8) | −0.0074 (9) |
C13 | 0.0525 (13) | 0.0257 (9) | 0.0352 (10) | −0.0007 (9) | 0.0001 (9) | −0.0003 (8) |
C14 | 0.0499 (13) | 0.0371 (11) | 0.0535 (13) | −0.0173 (10) | −0.0045 (10) | −0.0120 (10) |
C15 | 0.0341 (10) | 0.0427 (11) | 0.0376 (10) | −0.0007 (8) | −0.0090 (8) | −0.0081 (9) |
Geometric parameters (Å, º) top
O1—C2 | 1.340 (2) | C8—H82 | 0.9800 |
O1—C6 | 1.457 (2) | C8—H83 | 0.9800 |
O2—C2 | 1.199 (2) | C9—C10 | 1.502 (3) |
O5—C5 | 1.236 (2) | C9—H91 | 0.9900 |
N4—C5 | 1.323 (2) | C9—H92 | 0.9900 |
N4—C3 | 1.460 (2) | C10—C15 | 1.378 (3) |
N4—H4 | 0.88 (2) | C10—C11 | 1.383 (3) |
C2—C3 | 1.522 (2) | C11—C12 | 1.378 (3) |
C3—C8 | 1.524 (2) | C11—H11 | 0.9500 |
C3—C7 | 1.530 (3) | C12—C13 | 1.369 (3) |
C5—C6 | 1.519 (2) | C12—H12 | 0.9500 |
C6—C9 | 1.513 (3) | C13—C14 | 1.374 (3) |
C6—H6 | 1.0000 | C13—H13 | 0.9500 |
C7—H71 | 0.9800 | C14—C15 | 1.375 (3) |
C7—H72 | 0.9800 | C14—H14 | 0.9500 |
C7—H73 | 0.9800 | C15—H15 | 0.9500 |
C8—H81 | 0.9800 | | |
| | | |
C2—O1—C6 | 120.53 (13) | C3—C8—H82 | 109.5 |
C5—N4—C3 | 124.06 (14) | H81—C8—H82 | 109.5 |
C5—N4—H4 | 117.3 (14) | C3—C8—H83 | 109.5 |
C3—N4—H4 | 117.2 (14) | H81—C8—H83 | 109.5 |
O2—C2—O1 | 118.81 (16) | H82—C8—H83 | 109.5 |
O2—C2—C3 | 122.98 (16) | C10—C9—C6 | 114.08 (16) |
O1—C2—C3 | 118.20 (14) | C10—C9—H91 | 108.7 |
N4—C3—C2 | 110.10 (13) | C6—C9—H91 | 108.7 |
N4—C3—C8 | 108.03 (14) | C10—C9—H92 | 108.7 |
C2—C3—C8 | 108.97 (14) | C6—C9—H92 | 108.7 |
N4—C3—C7 | 110.62 (14) | H91—C9—H92 | 107.6 |
C2—C3—C7 | 108.25 (14) | C15—C10—C11 | 118.01 (17) |
C8—C3—C7 | 110.87 (15) | C15—C10—C9 | 121.09 (19) |
O5—C5—N4 | 123.78 (16) | C11—C10—C9 | 120.89 (19) |
O5—C5—C6 | 120.30 (16) | C12—C11—C10 | 121.43 (19) |
N4—C5—C6 | 115.92 (15) | C12—C11—H11 | 119.3 |
O1—C6—C9 | 106.64 (16) | C10—C11—H11 | 119.3 |
O1—C6—C5 | 111.79 (15) | C13—C12—C11 | 119.72 (19) |
C9—C6—C5 | 110.50 (15) | C13—C12—H12 | 120.1 |
O1—C6—H6 | 109.3 | C11—C12—H12 | 120.1 |
C9—C6—H6 | 109.3 | C12—C13—C14 | 119.49 (19) |
C5—C6—H6 | 109.3 | C12—C13—H13 | 120.3 |
C3—C7—H71 | 109.5 | C14—C13—H13 | 120.3 |
C3—C7—H72 | 109.5 | C13—C14—C15 | 120.7 (2) |
H71—C7—H72 | 109.5 | C13—C14—H14 | 119.7 |
C3—C7—H73 | 109.5 | C15—C14—H14 | 119.7 |
H71—C7—H73 | 109.5 | C14—C15—C10 | 120.63 (19) |
H72—C7—H73 | 109.5 | C14—C15—H15 | 119.7 |
C3—C8—H81 | 109.5 | C10—C15—H15 | 119.7 |
| | | |
C6—O1—C2—O2 | −165.28 (16) | N4—C5—C6—O1 | 28.5 (2) |
C6—O1—C2—C3 | 14.0 (2) | O5—C5—C6—C9 | −33.3 (3) |
C5—N4—C3—C2 | −37.3 (2) | N4—C5—C6—C9 | 147.15 (19) |
C5—N4—C3—C8 | −156.18 (18) | O1—C6—C9—C10 | −62.9 (2) |
C5—N4—C3—C7 | 82.3 (2) | C5—C6—C9—C10 | 175.40 (18) |
O2—C2—C3—N4 | −156.84 (17) | C6—C9—C10—C15 | −77.5 (3) |
O1—C2—C3—N4 | 23.9 (2) | C6—C9—C10—C11 | 103.7 (2) |
O2—C2—C3—C8 | −38.5 (2) | C15—C10—C11—C12 | −1.8 (3) |
O1—C2—C3—C8 | 142.19 (16) | C9—C10—C11—C12 | 176.93 (18) |
O2—C2—C3—C7 | 82.1 (2) | C10—C11—C12—C13 | 0.9 (3) |
O1—C2—C3—C7 | −97.14 (18) | C11—C12—C13—C14 | 0.8 (3) |
C3—N4—C5—O5 | −168.91 (19) | C12—C13—C14—C15 | −1.4 (3) |
C3—N4—C5—C6 | 10.6 (3) | C13—C14—C15—C10 | 0.4 (3) |
C2—O1—C6—C9 | −162.18 (16) | C11—C10—C15—C14 | 1.2 (3) |
C2—O1—C6—C5 | −41.3 (2) | C9—C10—C15—C14 | −177.55 (19) |
O5—C5—C6—O1 | −151.95 (18) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···O5i | 0.88 (2) | 1.95 (2) | 2.833 (2) | 176 (2) |
Symmetry code: (i) −x, −y+1, −z+1. |
(V) 6-benzyl-3,3-dimethyl-5-thioxomorpholin-2-one
top
Crystal data top
C13H15NO2S | Dx = 1.335 Mg m−3 |
Mr = 249.33 | Melting point = 448–449 K |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71069 Å |
a = 13.901 (4) Å | Cell parameters from 24 reflections |
b = 5.843 (6) Å | θ = 18.0–20.0° |
c = 16.559 (5) Å | µ = 0.25 mm−1 |
β = 112.70 (2)° | T = 173 K |
V = 1240.7 (13) Å3 | Needle, colourless |
Z = 4 | 0.50 × 0.20 × 0.15 mm |
F(000) = 528 | |
Data collection top
Rigaku AFC-5R diffractometer | 1926 reflections with I > 2σ(I) |
Radiation source: Rigaku rotating anode generator | Rint = 0.034 |
Graphite monochromator | θmax = 27.5°, θmin = 2.7° |
ω–2θ scans | h = 0→18 |
Absorption correction: ψ scan (North et al., 1968) | k = 0→7 |
Tmin = 0.696, Tmax = 0.963 | l = −21→19 |
3261 measured reflections | 3 standard reflections every 150 reflections |
2854 independent reflections | intensity decay: none |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.151 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.082P)2] where P = (Fo2 + 2Fc2)/3 |
2854 reflections | (Δ/σ)max = 0.001 |
160 parameters | Δρmax = 0.53 e Å−3 |
0 restraints | Δρmin = −0.36 e Å−3 |
Crystal data top
C13H15NO2S | V = 1240.7 (13) Å3 |
Mr = 249.33 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 13.901 (4) Å | µ = 0.25 mm−1 |
b = 5.843 (6) Å | T = 173 K |
c = 16.559 (5) Å | 0.50 × 0.20 × 0.15 mm |
β = 112.70 (2)° | |
Data collection top
Rigaku AFC-5R diffractometer | 1926 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.034 |
Tmin = 0.696, Tmax = 0.963 | 3 standard reflections every 150 reflections |
3261 measured reflections | intensity decay: none |
2854 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.052 | 0 restraints |
wR(F2) = 0.151 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.53 e Å−3 |
2854 reflections | Δρmin = −0.36 e Å−3 |
160 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S5 | 0.62224 (5) | −0.06702 (12) | 0.63839 (4) | 0.0320 (2) | |
O1 | 0.81373 (12) | 0.4508 (3) | 0.64124 (10) | 0.0253 (4) | |
O2 | 0.98048 (14) | 0.4688 (3) | 0.66856 (13) | 0.0366 (5) | |
N4 | 0.81735 (15) | −0.0209 (3) | 0.65326 (13) | 0.0234 (4) | |
H4 | 0.8240 (18) | −0.173 (5) | 0.6609 (15) | 0.022 (6)* | |
C2 | 0.90599 (18) | 0.3483 (4) | 0.65683 (15) | 0.0250 (5) | |
C3 | 0.91534 (17) | 0.0890 (4) | 0.66001 (15) | 0.0230 (5) | |
C5 | 0.72653 (17) | 0.0749 (4) | 0.63857 (14) | 0.0233 (5) | |
C6 | 0.71576 (17) | 0.3293 (4) | 0.62064 (15) | 0.0237 (5) | |
H6 | 0.6811 | 0.3960 | 0.6581 | 0.028* | |
C7 | 1.00011 (18) | 0.0211 (4) | 0.74852 (15) | 0.0267 (5) | |
H81 | 1.0087 | −0.1455 | 0.7510 | 0.040* | |
H82 | 0.9795 | 0.0716 | 0.7960 | 0.040* | |
H83 | 1.0662 | 0.0940 | 0.7550 | 0.040* | |
C8 | 0.94441 (19) | 0.0124 (4) | 0.58386 (16) | 0.0276 (5) | |
H71 | 1.0094 | 0.0875 | 0.5884 | 0.041* | |
H72 | 0.8885 | 0.0548 | 0.5283 | 0.041* | |
H73 | 0.9540 | −0.1540 | 0.5861 | 0.041* | |
C9 | 0.64598 (18) | 0.3850 (4) | 0.52460 (15) | 0.0278 (5) | |
H91 | 0.5773 | 0.3104 | 0.5099 | 0.033* | |
H92 | 0.6343 | 0.5524 | 0.5187 | 0.033* | |
C10 | 0.69169 (18) | 0.3079 (4) | 0.45982 (15) | 0.0255 (5) | |
C11 | 0.66486 (18) | 0.0969 (4) | 0.41769 (15) | 0.0269 (5) | |
H11 | 0.6179 | −0.0010 | 0.4303 | 0.032* | |
C12 | 0.7063 (2) | 0.0288 (5) | 0.35738 (15) | 0.0328 (6) | |
H12 | 0.6869 | −0.1146 | 0.3286 | 0.039* | |
C13 | 0.7756 (2) | 0.1693 (5) | 0.33920 (16) | 0.0369 (7) | |
H13 | 0.8040 | 0.1217 | 0.2982 | 0.044* | |
C14 | 0.8036 (2) | 0.3788 (5) | 0.38066 (17) | 0.0367 (6) | |
H14 | 0.8516 | 0.4748 | 0.3685 | 0.044* | |
C15 | 0.7611 (2) | 0.4480 (5) | 0.44020 (16) | 0.0300 (6) | |
H15 | 0.7796 | 0.5929 | 0.4679 | 0.036* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S5 | 0.0266 (3) | 0.0407 (4) | 0.0339 (4) | −0.0049 (3) | 0.0176 (3) | 0.0004 (3) |
O1 | 0.0260 (8) | 0.0238 (8) | 0.0272 (8) | 0.0013 (7) | 0.0115 (7) | −0.0012 (7) |
O2 | 0.0316 (10) | 0.0290 (10) | 0.0511 (11) | −0.0073 (8) | 0.0181 (9) | 0.0009 (8) |
N4 | 0.0254 (10) | 0.0197 (10) | 0.0273 (10) | −0.0001 (8) | 0.0127 (8) | −0.0007 (8) |
C2 | 0.0287 (12) | 0.0260 (12) | 0.0223 (11) | 0.0009 (10) | 0.0121 (9) | 0.0002 (9) |
C3 | 0.0212 (11) | 0.0253 (12) | 0.0253 (11) | −0.0023 (9) | 0.0121 (9) | −0.0020 (9) |
C5 | 0.0250 (11) | 0.0327 (13) | 0.0147 (10) | −0.0003 (10) | 0.0105 (9) | −0.0017 (9) |
C6 | 0.0227 (11) | 0.0300 (12) | 0.0221 (11) | 0.0000 (10) | 0.0125 (9) | −0.0021 (9) |
C7 | 0.0267 (12) | 0.0306 (13) | 0.0233 (11) | 0.0011 (10) | 0.0101 (10) | −0.0003 (9) |
C8 | 0.0276 (12) | 0.0330 (13) | 0.0258 (12) | 0.0027 (10) | 0.0141 (10) | 0.0010 (10) |
C9 | 0.0240 (11) | 0.0343 (14) | 0.0263 (12) | 0.0069 (10) | 0.0110 (10) | 0.0015 (10) |
C10 | 0.0235 (11) | 0.0318 (13) | 0.0203 (11) | 0.0055 (10) | 0.0074 (9) | 0.0071 (9) |
C11 | 0.0254 (11) | 0.0323 (14) | 0.0220 (11) | 0.0002 (10) | 0.0081 (9) | 0.0036 (10) |
C12 | 0.0345 (14) | 0.0387 (15) | 0.0202 (12) | 0.0067 (11) | 0.0049 (10) | −0.0033 (10) |
C13 | 0.0347 (14) | 0.0563 (18) | 0.0218 (12) | 0.0131 (13) | 0.0132 (11) | 0.0028 (12) |
C14 | 0.0293 (13) | 0.0540 (18) | 0.0301 (13) | 0.0018 (13) | 0.0152 (11) | 0.0131 (13) |
C15 | 0.0320 (13) | 0.0327 (13) | 0.0236 (12) | −0.0006 (11) | 0.0088 (10) | 0.0035 (10) |
Geometric parameters (Å, º) top
S5—C5 | 1.669 (2) | C8—H72 | 0.9800 |
O1—C2 | 1.347 (3) | C8—H73 | 0.9800 |
O1—C6 | 1.455 (3) | C9—C10 | 1.511 (3) |
O2—C2 | 1.204 (3) | C9—H91 | 0.9900 |
N4—C3 | 1.470 (3) | C9—H92 | 0.9900 |
N4—C5 | 1.315 (3) | C10—C11 | 1.394 (4) |
N4—H4 | 0.90 (3) | C10—C15 | 1.396 (4) |
C2—C3 | 1.520 (4) | C11—C12 | 1.389 (4) |
C3—C7 | 1.536 (3) | C11—H11 | 0.9500 |
C3—C8 | 1.532 (3) | C12—C13 | 1.385 (4) |
C5—C6 | 1.512 (4) | C12—H12 | 0.9500 |
C6—C9 | 1.544 (3) | C13—C14 | 1.384 (4) |
C6—H6 | 1.0000 | C13—H13 | 0.9500 |
C7—H81 | 0.9800 | C14—C15 | 1.391 (4) |
C7—H82 | 0.9800 | C14—H14 | 0.9500 |
C7—H83 | 0.9800 | C15—H15 | 0.9500 |
C8—H71 | 0.9800 | | |
| | | |
C2—O1—C6 | 124.30 (19) | C3—C8—H72 | 109.5 |
C5—N4—C3 | 128.6 (2) | H71—C8—H72 | 109.5 |
C5—N4—H4 | 119.2 (16) | C3—C8—H73 | 109.5 |
C3—N4—H4 | 112.3 (16) | H71—C8—H73 | 109.5 |
O2—C2—O1 | 117.8 (2) | H72—C8—H73 | 109.5 |
O2—C2—C3 | 121.4 (2) | C10—C9—C6 | 113.52 (19) |
O1—C2—C3 | 120.8 (2) | C10—C9—H91 | 108.9 |
N4—C3—C2 | 111.61 (19) | C6—C9—H91 | 108.9 |
N4—C3—C8 | 109.92 (19) | C10—C9—H92 | 108.9 |
C2—C3—C8 | 107.99 (19) | C6—C9—H92 | 108.9 |
N4—C3—C7 | 107.86 (18) | H91—C9—H92 | 107.7 |
C2—C3—C7 | 108.32 (19) | C11—C10—C15 | 118.5 (2) |
C8—C3—C7 | 111.15 (19) | C11—C10—C9 | 120.9 (2) |
N4—C5—C6 | 118.0 (2) | C15—C10—C9 | 120.5 (2) |
N4—C5—S5 | 124.1 (2) | C12—C11—C10 | 120.5 (2) |
C6—C5—S5 | 117.90 (17) | C12—C11—H11 | 119.7 |
O1—C6—C5 | 114.91 (19) | C10—C11—H11 | 119.7 |
O1—C6—C9 | 107.32 (18) | C13—C12—C11 | 120.2 (2) |
C5—C6—C9 | 112.62 (19) | C13—C12—H12 | 119.9 |
O1—C6—H6 | 107.2 | C11—C12—H12 | 119.9 |
C5—C6—H6 | 107.2 | C14—C13—C12 | 120.2 (2) |
C9—C6—H6 | 107.2 | C14—C13—H13 | 119.9 |
C3—C7—H81 | 109.5 | C12—C13—H13 | 119.9 |
C3—C7—H82 | 109.5 | C13—C14—C15 | 119.6 (3) |
H81—C7—H82 | 109.5 | C13—C14—H14 | 120.2 |
C3—C7—H83 | 109.5 | C15—C14—H14 | 120.2 |
H81—C7—H83 | 109.5 | C14—C15—C10 | 121.0 (3) |
H82—C7—H83 | 109.5 | C14—C15—H15 | 119.5 |
C3—C8—H71 | 109.5 | C10—C15—H15 | 119.5 |
| | | |
C6—O1—C2—O2 | 176.1 (2) | S5—C5—C6—O1 | 166.56 (14) |
C6—O1—C2—C3 | −4.3 (3) | N4—C5—C6—C9 | 109.8 (2) |
C5—N4—C3—C2 | 5.8 (3) | S5—C5—C6—C9 | −70.1 (2) |
C5—N4—C3—C8 | −114.0 (2) | O1—C6—C9—C10 | 61.4 (3) |
C5—N4—C3—C7 | 124.7 (2) | C5—C6—C9—C10 | −66.0 (3) |
O2—C2—C3—N4 | 173.9 (2) | C6—C9—C10—C11 | 94.7 (3) |
O1—C2—C3—N4 | −5.7 (3) | C6—C9—C10—C15 | −86.0 (3) |
O2—C2—C3—C8 | −65.2 (3) | C15—C10—C11—C12 | −0.2 (3) |
O1—C2—C3—C8 | 115.2 (2) | C9—C10—C11—C12 | 179.2 (2) |
O2—C2—C3—C7 | 55.3 (3) | C10—C11—C12—C13 | 0.7 (4) |
O1—C2—C3—C7 | −124.3 (2) | C11—C12—C13—C14 | −0.3 (4) |
C3—N4—C5—C6 | 4.0 (3) | C12—C13—C14—C15 | −0.5 (4) |
C3—N4—C5—S5 | −176.09 (17) | C13—C14—C15—C10 | 0.9 (4) |
C2—O1—C6—C5 | 14.0 (3) | C11—C10—C15—C14 | −0.6 (3) |
C2—O1—C6—C9 | −112.1 (2) | C9—C10—C15—C14 | −180.0 (2) |
N4—C5—C6—O1 | −13.5 (3) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···O1i | 0.90 (3) | 2.22 (3) | 3.092 (4) | 164 (2) |
Symmetry code: (i) x, y−1, z. |
(VI) 6-benzyl-3,3-dimethylmorpholine-2,5-dithione
top
Crystal data top
C13H15NOS2 | F(000) = 560 |
Mr = 265.39 | Dx = 1.327 Mg m−3 |
Triclinic, P1 | Melting point = 396–397 K |
a = 8.6915 (13) Å | Mo Kα radiation, λ = 0.71069 Å |
b = 11.896 (3) Å | Cell parameters from 25 reflections |
c = 13.661 (4) Å | θ = 19.0–20.0° |
α = 75.62 (2)° | µ = 0.38 mm−1 |
β = 76.211 (16)° | T = 173 K |
γ = 84.971 (18)° | Prism, yellow |
V = 1328.2 (6) Å3 | 0.48 × 0.40 × 0.30 mm |
Z = 4 | |
Data collection top
Rigaku AFC-5R diffractometer | 4424 reflections with I > 2σ(I) |
Radiation source: Rigaku rotating anode generator | Rint = 0.021 |
Graphite monochromator | θmax = 27.5°, θmin = 2.6° |
ω–2θ scans | h = −11→11 |
Absorption correction: ψ scan (North et al., 1968) | k = −15→0 |
Tmin = 0.781, Tmax = 0.891 | l = −17→17 |
6399 measured reflections | 3 standard reflections every 150 reflections |
6101 independent reflections | intensity decay: none |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0823P)2 + 0.0825P] where P = (Fo2 + 2Fc2)/3 |
6101 reflections | (Δ/σ)max = 0.001 |
319 parameters | Δρmax = 0.54 e Å−3 |
0 restraints | Δρmin = −0.41 e Å−3 |
Crystal data top
C13H15NOS2 | γ = 84.971 (18)° |
Mr = 265.39 | V = 1328.2 (6) Å3 |
Triclinic, P1 | Z = 4 |
a = 8.6915 (13) Å | Mo Kα radiation |
b = 11.896 (3) Å | µ = 0.38 mm−1 |
c = 13.661 (4) Å | T = 173 K |
α = 75.62 (2)° | 0.48 × 0.40 × 0.30 mm |
β = 76.211 (16)° | |
Data collection top
Rigaku AFC-5R diffractometer | 4424 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.021 |
Tmin = 0.781, Tmax = 0.891 | 3 standard reflections every 150 reflections |
6399 measured reflections | intensity decay: none |
6101 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.54 e Å−3 |
6101 reflections | Δρmin = −0.41 e Å−3 |
319 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S2 | 1.31149 (7) | 0.61456 (6) | 0.69359 (6) | 0.04615 (19) | |
S5 | 0.78907 (7) | 0.39220 (5) | 0.58055 (6) | 0.03978 (18) | |
O1 | 1.02831 (18) | 0.60055 (13) | 0.67956 (16) | 0.0411 (4) | |
N4 | 1.0494 (2) | 0.37797 (15) | 0.65169 (16) | 0.0297 (4) | |
H4 | 1.064 (4) | 0.310 (3) | 0.634 (2) | 0.057 (9)* | |
C2 | 1.1665 (3) | 0.54387 (19) | 0.68373 (19) | 0.0322 (5) | |
C3 | 1.1772 (2) | 0.41325 (18) | 0.69084 (19) | 0.0296 (5) | |
C5 | 0.9228 (2) | 0.43916 (18) | 0.62984 (19) | 0.0318 (5) | |
C6 | 0.8992 (3) | 0.56035 (19) | 0.6472 (2) | 0.0381 (6) | |
H6 | 0.8919 | 0.6136 | 0.5791 | 0.046* | |
C7 | 1.3348 (3) | 0.3776 (2) | 0.6257 (2) | 0.0355 (5) | |
H71 | 1.3472 | 0.4220 | 0.5537 | 0.053* | |
H72 | 1.3354 | 0.2945 | 0.6283 | 0.053* | |
H73 | 1.4225 | 0.3935 | 0.6535 | 0.053* | |
C8 | 1.1591 (3) | 0.3487 (2) | 0.8052 (2) | 0.0429 (6) | |
H81 | 1.1635 | 0.2648 | 0.8109 | 0.064* | |
H82 | 1.0570 | 0.3709 | 0.8457 | 0.064* | |
H83 | 1.2452 | 0.3693 | 0.8320 | 0.064* | |
C9 | 0.7450 (3) | 0.5789 (2) | 0.7248 (3) | 0.0504 (8) | |
H91 | 0.7367 | 0.6612 | 0.7288 | 0.060* | |
H92 | 0.6547 | 0.5646 | 0.6974 | 0.060* | |
C10 | 0.7289 (3) | 0.5037 (2) | 0.8330 (2) | 0.0474 (7) | |
C11 | 0.6270 (3) | 0.4108 (2) | 0.8676 (3) | 0.0544 (8) | |
H11 | 0.5719 | 0.3923 | 0.8217 | 0.065* | |
C12 | 0.6056 (4) | 0.3452 (3) | 0.9691 (3) | 0.0633 (9) | |
H12 | 0.5350 | 0.2825 | 0.9919 | 0.076* | |
C13 | 0.6837 (4) | 0.3690 (3) | 1.0358 (3) | 0.0679 (10) | |
H13 | 0.6681 | 0.3234 | 1.1050 | 0.082* | |
C14 | 0.7868 (4) | 0.4606 (3) | 1.0026 (3) | 0.0729 (11) | |
H14 | 0.8426 | 0.4777 | 1.0488 | 0.088* | |
C15 | 0.8079 (3) | 0.5266 (3) | 0.9026 (3) | 0.0617 (9) | |
H15 | 0.8783 | 0.5894 | 0.8806 | 0.074* | |
S22 | 0.51036 (7) | −0.14157 (5) | 0.71819 (7) | 0.0507 (2) | |
S25 | 1.14229 (6) | 0.11719 (5) | 0.57744 (5) | 0.03136 (15) | |
O21 | 0.80999 (16) | −0.12851 (12) | 0.68707 (13) | 0.0299 (3) | |
N24 | 0.83142 (19) | 0.10772 (15) | 0.62064 (14) | 0.0252 (4) | |
H24 | 0.838 (3) | 0.186 (2) | 0.598 (2) | 0.039 (7)* | |
C22 | 0.6729 (2) | −0.06953 (18) | 0.68532 (18) | 0.0283 (4) | |
C23 | 0.6698 (2) | 0.06227 (17) | 0.65390 (16) | 0.0246 (4) | |
C25 | 0.9671 (2) | 0.05103 (18) | 0.62203 (16) | 0.0246 (4) | |
C26 | 0.9652 (2) | −0.07851 (18) | 0.66533 (18) | 0.0278 (4) | |
H26 | 1.0381 | −0.1152 | 0.6126 | 0.033* | |
C27 | 0.5915 (3) | 0.10592 (19) | 0.56134 (18) | 0.0303 (5) | |
H271 | 0.5911 | 0.1910 | 0.5416 | 0.045* | |
H272 | 0.4823 | 0.0796 | 0.5806 | 0.045* | |
H273 | 0.6511 | 0.0751 | 0.5027 | 0.045* | |
C28 | 0.5812 (3) | 0.11054 (19) | 0.74677 (17) | 0.0302 (5) | |
H281 | 0.4702 | 0.0881 | 0.7657 | 0.045* | |
H282 | 0.5862 | 0.1954 | 0.7283 | 0.045* | |
H283 | 0.6306 | 0.0789 | 0.8057 | 0.045* | |
C29 | 1.0253 (3) | −0.11551 (19) | 0.76561 (18) | 0.0310 (5) | |
H291 | 1.0276 | −0.2013 | 0.7880 | 0.037* | |
H292 | 1.1352 | −0.0895 | 0.7517 | 0.037* | |
C30 | 0.9237 (3) | −0.06613 (19) | 0.85260 (17) | 0.0295 (5) | |
C31 | 0.9515 (3) | 0.0432 (2) | 0.86368 (18) | 0.0340 (5) | |
H31 | 1.0376 | 0.0862 | 0.8173 | 0.041* | |
C32 | 0.8556 (3) | 0.0904 (2) | 0.94128 (19) | 0.0393 (5) | |
H32 | 0.8760 | 0.1652 | 0.9475 | 0.047* | |
C33 | 0.7303 (3) | 0.0285 (2) | 1.00955 (19) | 0.0388 (5) | |
H33 | 0.6640 | 0.0609 | 1.0624 | 0.047* | |
C34 | 0.7020 (3) | −0.0810 (2) | 1.00048 (19) | 0.0401 (6) | |
H34 | 0.6169 | −0.1241 | 1.0479 | 0.048* | |
C35 | 0.7973 (3) | −0.1280 (2) | 0.92259 (19) | 0.0356 (5) | |
H35 | 0.7765 | −0.2028 | 0.9168 | 0.043* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S2 | 0.0322 (3) | 0.0366 (3) | 0.0781 (5) | −0.0035 (3) | −0.0174 (3) | −0.0235 (3) |
S5 | 0.0270 (3) | 0.0261 (3) | 0.0668 (4) | −0.0026 (2) | −0.0219 (3) | −0.0006 (3) |
O1 | 0.0221 (7) | 0.0232 (8) | 0.0799 (13) | 0.0028 (6) | −0.0092 (8) | −0.0189 (8) |
N4 | 0.0234 (9) | 0.0205 (8) | 0.0481 (11) | 0.0019 (7) | −0.0135 (8) | −0.0090 (8) |
C2 | 0.0234 (10) | 0.0277 (11) | 0.0460 (13) | 0.0001 (8) | −0.0065 (9) | −0.0110 (10) |
C3 | 0.0228 (10) | 0.0238 (10) | 0.0456 (13) | 0.0021 (8) | −0.0126 (9) | −0.0108 (9) |
C5 | 0.0189 (10) | 0.0218 (10) | 0.0509 (14) | −0.0010 (8) | −0.0090 (9) | −0.0007 (9) |
C6 | 0.0209 (10) | 0.0210 (10) | 0.0709 (17) | 0.0007 (8) | −0.0136 (11) | −0.0051 (10) |
C7 | 0.0224 (10) | 0.0320 (11) | 0.0557 (15) | 0.0054 (9) | −0.0137 (10) | −0.0140 (11) |
C8 | 0.0488 (15) | 0.0337 (12) | 0.0492 (15) | −0.0037 (11) | −0.0192 (12) | −0.0063 (11) |
C9 | 0.0236 (11) | 0.0232 (11) | 0.098 (2) | 0.0060 (9) | −0.0030 (13) | −0.0142 (13) |
C10 | 0.0250 (11) | 0.0292 (12) | 0.084 (2) | 0.0027 (9) | 0.0073 (12) | −0.0268 (13) |
C11 | 0.0348 (14) | 0.0382 (14) | 0.090 (2) | −0.0054 (11) | −0.0092 (14) | −0.0185 (15) |
C12 | 0.0495 (17) | 0.0443 (16) | 0.092 (3) | −0.0110 (14) | 0.0005 (17) | −0.0217 (17) |
C13 | 0.065 (2) | 0.061 (2) | 0.073 (2) | −0.0064 (17) | 0.0126 (17) | −0.0337 (18) |
C14 | 0.064 (2) | 0.086 (3) | 0.076 (2) | −0.0168 (19) | 0.0122 (18) | −0.054 (2) |
C15 | 0.0458 (16) | 0.0567 (18) | 0.085 (2) | −0.0176 (14) | 0.0164 (16) | −0.0460 (18) |
S22 | 0.0257 (3) | 0.0275 (3) | 0.0941 (6) | −0.0038 (2) | −0.0092 (3) | −0.0085 (3) |
S25 | 0.0180 (2) | 0.0334 (3) | 0.0425 (3) | −0.0014 (2) | −0.0002 (2) | −0.0147 (2) |
O21 | 0.0208 (7) | 0.0213 (7) | 0.0493 (9) | 0.0018 (6) | −0.0092 (7) | −0.0110 (6) |
N24 | 0.0186 (8) | 0.0228 (9) | 0.0340 (10) | −0.0014 (7) | −0.0042 (7) | −0.0077 (7) |
C22 | 0.0200 (9) | 0.0234 (10) | 0.0427 (12) | 0.0025 (8) | −0.0063 (9) | −0.0117 (9) |
C23 | 0.0160 (9) | 0.0231 (10) | 0.0341 (11) | 0.0008 (7) | −0.0032 (8) | −0.0086 (8) |
C25 | 0.0201 (9) | 0.0279 (10) | 0.0277 (10) | 0.0015 (8) | −0.0027 (8) | −0.0133 (8) |
C26 | 0.0160 (9) | 0.0274 (10) | 0.0419 (12) | 0.0043 (8) | −0.0044 (8) | −0.0154 (9) |
C27 | 0.0246 (10) | 0.0324 (11) | 0.0355 (12) | 0.0038 (8) | −0.0079 (9) | −0.0113 (9) |
C28 | 0.0281 (11) | 0.0288 (11) | 0.0321 (11) | 0.0035 (9) | −0.0028 (9) | −0.0094 (9) |
C29 | 0.0247 (10) | 0.0265 (10) | 0.0422 (13) | 0.0065 (8) | −0.0088 (9) | −0.0099 (9) |
C30 | 0.0246 (10) | 0.0307 (11) | 0.0338 (12) | 0.0053 (8) | −0.0104 (9) | −0.0072 (9) |
C31 | 0.0313 (12) | 0.0359 (12) | 0.0353 (12) | −0.0018 (9) | −0.0101 (10) | −0.0065 (10) |
C32 | 0.0421 (13) | 0.0390 (13) | 0.0411 (13) | 0.0007 (11) | −0.0126 (11) | −0.0148 (11) |
C33 | 0.0395 (13) | 0.0455 (14) | 0.0319 (12) | 0.0045 (11) | −0.0071 (10) | −0.0130 (11) |
C34 | 0.0346 (12) | 0.0462 (14) | 0.0343 (13) | −0.0032 (11) | −0.0025 (10) | −0.0042 (11) |
C35 | 0.0324 (12) | 0.0310 (11) | 0.0416 (13) | −0.0002 (9) | −0.0084 (10) | −0.0053 (10) |
Geometric parameters (Å, º) top
S2—C2 | 1.624 (2) | S22—C22 | 1.628 (2) |
S5—C5 | 1.670 (2) | S25—C25 | 1.685 (2) |
O1—C2 | 1.331 (3) | O21—C22 | 1.331 (2) |
O1—C6 | 1.455 (3) | O21—C26 | 1.458 (2) |
N4—C5 | 1.319 (3) | N24—C25 | 1.308 (3) |
N4—C3 | 1.473 (3) | N24—C23 | 1.476 (2) |
N4—H4 | 0.89 (3) | N24—H24 | 0.91 (3) |
C2—C3 | 1.529 (3) | C22—C23 | 1.519 (3) |
C3—C7 | 1.534 (3) | C23—C28 | 1.533 (3) |
C3—C8 | 1.538 (3) | C23—C27 | 1.534 (3) |
C5—C6 | 1.507 (3) | C25—C26 | 1.507 (3) |
C6—C9 | 1.534 (3) | C26—C29 | 1.531 (3) |
C6—H6 | 1.0000 | C26—H26 | 1.0000 |
C7—H71 | 0.9800 | C27—H271 | 0.9800 |
C7—H72 | 0.9800 | C27—H272 | 0.9800 |
C7—H73 | 0.9800 | C27—H273 | 0.9800 |
C8—H81 | 0.9800 | C28—H281 | 0.9800 |
C8—H82 | 0.9800 | C28—H282 | 0.9800 |
C8—H83 | 0.9800 | C28—H283 | 0.9800 |
C9—C10 | 1.508 (4) | C29—C30 | 1.514 (3) |
C9—H91 | 0.9900 | C29—H291 | 0.9900 |
C9—H92 | 0.9900 | C29—H292 | 0.9900 |
C10—C15 | 1.386 (4) | C30—C31 | 1.394 (3) |
C10—C11 | 1.393 (3) | C30—C35 | 1.398 (3) |
C11—C12 | 1.389 (5) | C31—C32 | 1.388 (3) |
C11—H11 | 0.9500 | C31—H31 | 0.9500 |
C12—C13 | 1.352 (5) | C32—C33 | 1.383 (3) |
C12—H12 | 0.9500 | C32—H32 | 0.9500 |
C13—C14 | 1.389 (5) | C33—C34 | 1.387 (4) |
C13—H13 | 0.9500 | C33—H33 | 0.9500 |
C14—C15 | 1.375 (5) | C34—C35 | 1.387 (3) |
C14—H14 | 0.9500 | C34—H34 | 0.9500 |
C15—H15 | 0.9500 | C35—H35 | 0.9500 |
| | | |
C2—O1—C6 | 124.91 (18) | C22—O21—C26 | 126.03 (16) |
C5—N4—C3 | 128.14 (19) | C25—N24—C23 | 128.93 (18) |
C5—N4—H4 | 115 (2) | C25—N24—H24 | 115.1 (17) |
C3—N4—H4 | 117 (2) | C23—N24—H24 | 115.9 (17) |
O1—C2—C3 | 119.02 (19) | O21—C22—C23 | 120.13 (18) |
O1—C2—S2 | 117.96 (17) | O21—C22—S22 | 118.61 (15) |
C3—C2—S2 | 122.68 (16) | C23—C22—S22 | 121.26 (15) |
N4—C3—C2 | 110.90 (17) | N24—C23—C22 | 111.51 (16) |
N4—C3—C7 | 107.16 (18) | N24—C23—C28 | 108.02 (17) |
C2—C3—C7 | 111.39 (18) | C22—C23—C28 | 109.37 (18) |
N4—C3—C8 | 108.33 (18) | N24—C23—C27 | 106.60 (17) |
C2—C3—C8 | 108.7 (2) | C22—C23—C27 | 110.35 (18) |
C7—C3—C8 | 110.28 (19) | C28—C23—C27 | 110.96 (17) |
N4—C5—C6 | 118.2 (2) | N24—C25—C26 | 118.26 (18) |
N4—C5—S5 | 124.03 (18) | N24—C25—S25 | 122.55 (16) |
C6—C5—S5 | 117.72 (16) | C26—C25—S25 | 119.19 (15) |
O1—C6—C5 | 114.97 (18) | O21—C26—C25 | 114.31 (16) |
O1—C6—C9 | 107.5 (2) | O21—C26—C29 | 106.92 (17) |
C5—C6—C9 | 113.86 (19) | C25—C26—C29 | 112.68 (17) |
O1—C6—H6 | 106.6 | O21—C26—H26 | 107.5 |
C5—C6—H6 | 106.6 | C25—C26—H26 | 107.5 |
C9—C6—H6 | 106.6 | C29—C26—H26 | 107.5 |
C3—C7—H71 | 109.5 | C23—C27—H271 | 109.5 |
C3—C7—H72 | 109.5 | C23—C27—H272 | 109.5 |
H71—C7—H72 | 109.5 | H271—C27—H272 | 109.5 |
C3—C7—H73 | 109.5 | C23—C27—H273 | 109.5 |
H71—C7—H73 | 109.5 | H271—C27—H273 | 109.5 |
H72—C7—H73 | 109.5 | H272—C27—H273 | 109.5 |
C3—C8—H81 | 109.5 | C23—C28—H281 | 109.5 |
C3—C8—H82 | 109.5 | C23—C28—H282 | 109.5 |
H81—C8—H82 | 109.5 | H281—C28—H282 | 109.5 |
C3—C8—H83 | 109.5 | C23—C28—H283 | 109.5 |
H81—C8—H83 | 109.5 | H281—C28—H283 | 109.5 |
H82—C8—H83 | 109.5 | H282—C28—H283 | 109.5 |
C10—C9—C6 | 115.5 (2) | C30—C29—C26 | 112.80 (17) |
C10—C9—H91 | 108.4 | C30—C29—H291 | 109.0 |
C6—C9—H91 | 108.4 | C26—C29—H291 | 109.0 |
C10—C9—H92 | 108.4 | C30—C29—H292 | 109.0 |
C6—C9—H92 | 108.4 | C26—C29—H292 | 109.0 |
H91—C9—H92 | 107.5 | H291—C29—H292 | 107.8 |
C15—C10—C11 | 117.8 (3) | C31—C30—C35 | 118.2 (2) |
C15—C10—C9 | 122.0 (2) | C31—C30—C29 | 120.9 (2) |
C11—C10—C9 | 120.2 (3) | C35—C30—C29 | 120.8 (2) |
C12—C11—C10 | 120.3 (3) | C32—C31—C30 | 121.1 (2) |
C12—C11—H11 | 119.9 | C32—C31—H31 | 119.4 |
C10—C11—H11 | 119.9 | C30—C31—H31 | 119.4 |
C13—C12—C11 | 121.1 (3) | C33—C32—C31 | 120.0 (2) |
C13—C12—H12 | 119.5 | C33—C32—H32 | 120.0 |
C11—C12—H12 | 119.5 | C31—C32—H32 | 120.0 |
C12—C13—C14 | 119.5 (4) | C32—C33—C34 | 119.7 (2) |
C12—C13—H13 | 120.2 | C32—C33—H33 | 120.2 |
C14—C13—H13 | 120.2 | C34—C33—H33 | 120.2 |
C15—C14—C13 | 119.8 (4) | C33—C34—C35 | 120.4 (2) |
C15—C14—H14 | 120.1 | C33—C34—H34 | 119.8 |
C13—C14—H14 | 120.1 | C35—C34—H34 | 119.8 |
C14—C15—C10 | 121.5 (3) | C34—C35—C30 | 120.6 (2) |
C14—C15—H15 | 119.2 | C34—C35—H35 | 119.7 |
C10—C15—H15 | 119.2 | C30—C35—H35 | 119.7 |
| | | |
C6—O1—C2—C3 | −21.4 (4) | C26—O21—C22—C23 | 2.9 (3) |
C6—O1—C2—S2 | 165.11 (19) | C26—O21—C22—S22 | −176.68 (16) |
C5—N4—C3—C2 | −11.8 (3) | C25—N24—C23—C22 | −4.9 (3) |
C5—N4—C3—C7 | −133.6 (2) | C25—N24—C23—C28 | 115.3 (2) |
C5—N4—C3—C8 | 107.4 (3) | C25—N24—C23—C27 | −125.4 (2) |
O1—C2—C3—N4 | 22.2 (3) | O21—C22—C23—N24 | 4.4 (3) |
S2—C2—C3—N4 | −164.59 (17) | S22—C22—C23—N24 | −176.09 (16) |
O1—C2—C3—C7 | 141.5 (2) | O21—C22—C23—C28 | −115.0 (2) |
S2—C2—C3—C7 | −45.3 (3) | S22—C22—C23—C28 | 64.5 (2) |
O1—C2—C3—C8 | −96.8 (3) | O21—C22—C23—C27 | 122.6 (2) |
S2—C2—C3—C8 | 76.4 (2) | S22—C22—C23—C27 | −57.8 (2) |
C3—N4—C5—C6 | −1.0 (4) | C23—N24—C25—C26 | −1.8 (3) |
C3—N4—C5—S5 | 177.11 (19) | C23—N24—C25—S25 | 178.19 (16) |
C2—O1—C6—C5 | 7.2 (4) | C22—O21—C26—C25 | −9.6 (3) |
C2—O1—C6—C9 | 135.2 (2) | C22—O21—C26—C29 | 115.9 (2) |
N4—C5—C6—O1 | 4.6 (3) | N24—C25—C26—O21 | 8.7 (3) |
S5—C5—C6—O1 | −173.61 (17) | S25—C25—C26—O21 | −171.28 (14) |
N4—C5—C6—C9 | −120.1 (3) | N24—C25—C26—C29 | −113.6 (2) |
S5—C5—C6—C9 | 61.7 (3) | S25—C25—C26—C29 | 66.4 (2) |
O1—C6—C9—C10 | −67.7 (3) | O21—C26—C29—C30 | −64.3 (2) |
C5—C6—C9—C10 | 60.9 (3) | C25—C26—C29—C30 | 62.1 (2) |
C6—C9—C10—C15 | 77.1 (3) | C26—C29—C30—C31 | −86.9 (3) |
C6—C9—C10—C11 | −105.8 (3) | C26—C29—C30—C35 | 91.7 (2) |
C15—C10—C11—C12 | 0.7 (4) | C35—C30—C31—C32 | −0.7 (3) |
C9—C10—C11—C12 | −176.6 (3) | C29—C30—C31—C32 | 178.0 (2) |
C10—C11—C12—C13 | −0.6 (5) | C30—C31—C32—C33 | 0.3 (4) |
C11—C12—C13—C14 | 0.1 (5) | C31—C32—C33—C34 | 0.5 (4) |
C12—C13—C14—C15 | 0.4 (5) | C32—C33—C34—C35 | −0.8 (4) |
C13—C14—C15—C10 | −0.3 (5) | C33—C34—C35—C30 | 0.4 (4) |
C11—C10—C15—C14 | −0.2 (4) | C31—C30—C35—C34 | 0.3 (3) |
C9—C10—C15—C14 | 177.0 (3) | C29—C30—C35—C34 | −178.3 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···S25 | 0.89 (3) | 2.58 (3) | 3.469 (2) | 173 (3) |
N24—H24···S5 | 0.91 (3) | 2.42 (3) | 3.293 (2) | 163 (2) |
Experimental details
| (IV) | (V) | (VI) |
Crystal data |
Chemical formula | C13H15NO3 | C13H15NO2S | C13H15NOS2 |
Mr | 233.27 | 249.33 | 265.39 |
Crystal system, space group | Triclinic, P1 | Monoclinic, P21/n | Triclinic, P1 |
Temperature (K) | 173 | 173 | 173 |
a, b, c (Å) | 5.699 (2), 10.347 (3), 11.327 (4) | 13.901 (4), 5.843 (6), 16.559 (5) | 8.6915 (13), 11.896 (3), 13.661 (4) |
α, β, γ (°) | 67.51 (2), 80.38 (3), 80.35 (3) | 90, 112.70 (2), 90 | 75.62 (2), 76.211 (16), 84.971 (18) |
V (Å3) | 604.5 (4) | 1240.7 (13) | 1328.2 (6) |
Z | 2 | 4 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.09 | 0.25 | 0.38 |
Crystal size (mm) | 0.50 × 0.38 × 0.12 | 0.50 × 0.20 × 0.15 | 0.48 × 0.40 × 0.30 |
|
Data collection |
Diffractometer | Rigaku AFC-5R diffractometer | Rigaku AFC-5R diffractometer | Rigaku AFC-5R diffractometer |
Absorption correction | – | ψ scan (North et al., 1968) | ψ scan (North et al., 1968) |
Tmin, Tmax | – | 0.696, 0.963 | 0.781, 0.891 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2927, 2773, 1859 | 3261, 2854, 1926 | 6399, 6101, 4424 |
Rint | 0.025 | 0.034 | 0.021 |
(sin θ/λ)max (Å−1) | 0.650 | 0.650 | 0.650 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.130, 1.02 | 0.052, 0.151, 1.04 | 0.049, 0.142, 1.05 |
No. of reflections | 2773 | 2854 | 6101 |
No. of parameters | 160 | 160 | 319 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.27, −0.23 | 0.53, −0.36 | 0.54, −0.41 |
Selected geometric parameters (Å, º) for (IV) topO1—C2 | 1.340 (2) | O5—C5 | 1.236 (2) |
O1—C6 | 1.457 (2) | N4—C5 | 1.323 (2) |
O2—C2 | 1.199 (2) | N4—C3 | 1.460 (2) |
| | | |
C2—O1—C6 | 120.53 (13) | C5—N4—C3 | 124.06 (14) |
Hydrogen-bond geometry (Å, º) for (IV) top
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···O5i | 0.88 (2) | 1.95 (2) | 2.833 (2) | 176 (2) |
Symmetry code: (i) −x, −y+1, −z+1. |
Selected geometric parameters (Å, º) for (V) topS5—C5 | 1.669 (2) | O2—C2 | 1.204 (3) |
O1—C2 | 1.347 (3) | N4—C3 | 1.470 (3) |
O1—C6 | 1.455 (3) | N4—C5 | 1.315 (3) |
| | | |
C2—O1—C6 | 124.30 (19) | C5—N4—C3 | 128.6 (2) |
Hydrogen-bond geometry (Å, º) for (V) top
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···O1i | 0.90 (3) | 2.22 (3) | 3.092 (4) | 164 (2) |
Symmetry code: (i) x, y−1, z. |
Selected geometric parameters (Å, º) for (VI) topS2—C2 | 1.624 (2) | S22—C22 | 1.628 (2) |
S5—C5 | 1.670 (2) | S25—C25 | 1.685 (2) |
O1—C2 | 1.331 (3) | O21—C22 | 1.331 (2) |
O1—C6 | 1.455 (3) | O21—C26 | 1.458 (2) |
N4—C5 | 1.319 (3) | N24—C25 | 1.308 (3) |
N4—C3 | 1.473 (3) | N24—C23 | 1.476 (2) |
| | | |
C2—O1—C6 | 124.91 (18) | C22—O21—C26 | 126.03 (16) |
C5—N4—C3 | 128.14 (19) | C25—N24—C23 | 128.93 (18) |
Hydrogen-bond geometry (Å, º) for (VI) top
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···S25 | 0.89 (3) | 2.58 (3) | 3.469 (2) | 173 (3) |
N24—H24···S5 | 0.91 (3) | 2.42 (3) | 3.293 (2) | 163 (2) |
Some years ago, we showed that diamides akin to compound (III) (see Scheme), which are conveniently prepared by the reaction of hydroxy acids with 3-amino-2H-azirines, can be cyclized by treatment with HCl gas in a non-nucleophilic solvent (Obrecht & Heimgartner, 1984, 1987; Heimgartner, 1991a; Heimgartner et al., 1999). This method, the so-called 'direct amide cyclization', has been used widely to prepare cyclic depsipeptides by lactone formation (Obrecht & Heimgartner, 1984, 1990; Magirius, 1995; Koch & Heimgartner, 2000; Koch et al., 2000). In the case of larger rings, the cyclization occurs via 1,3-oxazol-5(4H)-ones as intermediates and ring enlargement by intramolecular nucleophilic attack of the hydroxy group at the oxazolone C═ O group (Heimgartner et al., 1999). On the other hand, a mechanism via an intermediate oxonium ion is more likely for the formation of the six-membered morpholine-2,5-diones.
In connection with our investigations of 1,3-dipolar cycloadditions with thiocarbonyl compounds (cf. Heimgartner, 1986, 1991b; Linden et al., 1999; Mloston & Heimgartner, 2000), we also became interested in the thioanalogues of morpholinediones as C═S dipolarophiles. The mono- and dithioanalogues are attractive models for the study of the chemoselectivity (dipolarophilicity) of different π-systems in 1,3-dipolar cycloadditions. The racemic morpholine-2,5-dione (IV) was prepared by following the described protocol (Obrecht & Heimgartner, 1987). Subsequent successive thionation with Lawesson reagent (LR) led almost quantitatively to the monothione (V) and then to the morpholine-2,5-dithione (VI), although the latter reaction was sluggish with a low yield. As part of the full characterization of compounds (IV), (V), and (VI), their low-temperature crystal structures have been determined. \sch
In each compound, the bond lengths and angles are generally within normal ranges. The amide C═O and thioamide C═S bonds in the dione, (IV), and the dithione, (VI), respectively, are longer than the corresponding ester C═O and thioester C═S bonds (Tables 1 and 3). This reflects the expected greater π-electron delocalization in (thio)amide groups compared with (thio)ester groups and is consistent with the trends for such groups derived from an examination of the Cambridge Structural Database (CSD, October 2000 release; Allen & Kennard, 1993). The angles at the O and N atoms of the morpholine rings (Tables 1, 3 and 5) are significantly larger than 120°, particularly in the presence of the ring flattening observed in the monothione, (V), and dithione, (VI), derivatives, as described below.
The morpholine ring of the dione, (IV), has puckering parameters (Cremer & Pople, 1975) of Q = 0.463 (2) Å, θ = 92.4 (2)° and ϕ = 133.4 (2)°, which represent a conformation midway between a boat (nearest ideal values: θ = 90, ϕ = 120°) and a twist-boat (θ = 90, ϕ = 150°) (Boeyens, 1978), where the boat ends are the two sp3 C atoms of the ring (Fig. 1) and the twist results from a slight non-planarity of the four atoms constituting the base of the boat. The r.m.s. deviation of O1, C2, N4 and C5 from their mean plane is 0.053 Å, while C3 and C6 deviate from this plane by 0.363 (3) and 0.416 (3) Å, respectively. The benzyl substituent is in the favoured 'exo' position.
The morpholine ring of the monothione derivative, (V), has a much flatter and less twisted boat conformation (Fig. 2). The two sp3 C atoms of the ring again form the ends of the boat, but the dimethyl end is almost co-planar with the base of the boat, so that the ring is distorted towards an envelope conformation. This is borne out by the ring puckering parameters of Q = 0.139 (2) Å, θ = 75.2 (8)° and ϕ = 298.3 (10)°. The value of ϕ is appropriate for either an envelope or boat conformation (nearest ideal value is 300°) (Boeyens, 1978), while θ lies approximately midway between the ideal values for the boat (90°) and envelope (54.7°) conformations. The r.m.s. deviation of O1, C2, N4 and C5 from their mean plane is only 0.002 Å, while C3 and C6 deviate from this plane by 0.069 (3) and 0.162 (3) Å, respectively. The orientation of the benzyl group is 'endo', which brings the phenyl ring into a position above the body of the morpholine ring.
The asymmetric unit of the dithione derivative, (VI), has two symmetry-independent molecules (Fig. 3) and PLATON (Spek, 2001) confirmed that there was no additional overlooked symmetry, although the molecules are approximately related by a non-crystallographic twofold axis. The two molecules have different puckering of the morpholine ring and the orientation of the phenyl ring about the C9—C10 bond (C29—C30 in molecule B) also differs by a twist of about 17°. The morpholine ring of molecule A has puckering parameters of Q = 0.185 (2) Å, θ = 62.8 (7)° and ϕ = 75.2 (8)°, which represent a conformation midway between that of a slightly flattened envelope (nearest ideal values: θ = 54.7, ϕ = 60°) and a screw-boat (θ = 67.5, ϕ = 90°) (Boeyens, 1978). In contrast to compounds (IV) and (V), it is not an sp3 C atom that is out of the plane, but the thioester C atom, C2. The r.m.s. deviation of O1, C3, N4, C5 and C6 from their mean plane is 0.022 Å, while C2 deviates from this plane by 0.250 (3) Å. The phenyl ring is positioned above the morpholine ring.
The morpholine ring in molecule B of (VI) has a flattened boat conformation distorted towards an envelope, similar to, but even flatter than the conformation observed in compound (V). The ring puckering parameters are Q = 0.097 (2) Å, θ = 101.6 (12)° and ϕ = 120.5 (12)°. Using the inverted molecule, which is also present in this racemic compound, θ = 78.4 (12)° and ϕ = 300.5 (12)°, which indicate a conformation similar to that observed for compound (V). As in (V), the two sp3 C atoms of the ring form the ends of the boat, with the dimethyl end being almost co-planar with the base of the boat. The r.m.s. deviation of O21, C22, N24 and C25 from their mean plane is only 0.0004 Å, while C23 and C26 deviate from this plane by 0.056 (3) and 0.108 (3) Å, respectively. The orientation of the benzyl group is 'endo', with the phenyl ring again being positioned above the morpholine ring.
There are only two structure reports cited in the CSD of compounds containing a morpholine-2,5-dione moiety, while there are no reports of any structures involving 5-thioxomorpholin-2-one or morpholine-2,5-dithione moieties. Both reported structures are simply substituted morpholine derivatives. The morpholine ring in 3-benzyl-6-isopropylmorpholine-2,5-dione was reported as having a boat conformation with the sp3 C atoms forming the boat ends (Bolte & Egert, 1994). However, a closer examination of the puckering parameters [Q = 0.494 (2) Å, θ = 93.1 (2)° and ϕ = 129.3 (2)°] shows that the ring has an unflattened conformation that lies midway between a boat and a twist-boat, and which is virtually identical to that in compound (IV). Conversely, in 3-benzyl-3-hydroxy-6-methylamino-6-(2-methylpropyl)morpholine-2,5-dione (Iijima et al., 1992), the morpholine ring has an almost completely flattened boat conformation with the two sp3 C atoms being only 0.086 and 0.078 Å from the plane defined by the other four ring atoms, which are all 0.002 Å from their mean plane.
While a comparison of the structures of compounds (IV), (V) and (VI) might induce one to conclude that an increasing number of thione substituents in the morpholine ring leads to a greater flattening of the ring, the two previously reported structures of morpholine-2,5-dione derivatives contradict this hypothesis and suggest that the cause of the ring flattening is not necessarily related to the degree of thione substitution, but to other effects which cannot readily be deduced from the small number of determined structures of this class.
The amide N—H of compound (IV) forms an intermolecular hydrogen bond with the amide O atom of an adjacent molecule (Table 2). This acceptor molecule then donates back to the first molecule, thereby linking pairs of molecules into centrosymmetric dimers whose interactions can be described by the graph set motif (Bernstein et al., 1995) of R22(8). In the monothione derivative, (V), a simple change from the ester group of (IV) to a thioester group has dramatically altered the hydrogen bonding pattern (Table 4). The acceptor atom is now the morpholine ring O atom of a neighbouring molecule and the intermolecular interactions link the molecules of (V) into infinite one-dimensional chains which run parallel to the [010] direction and have a graph set motif of C(5). In compound (VI), the hydrogen bonding pattern is similar to that in compound (IV). The acceptor atom is the thioamide S atom of the other symmetry-independent molecule in the asymmetric unit. This acceptor molecule then donates back to the first molecule, thus forming hydrogen-bonded dimers comprised of one of each of the symmetry-independent molecules (Table 6, Fig. 3). These interactions can again be described by the graph set motif of R22(8).