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The morpholine ring of the title dione, C13H15NO3, shows a boat conformation that is distorted towards a twist-boat, with the boat ends being the two Csp3 atoms of the ring. The benzyl substituent is in the favoured `exo' position. In the mono­thione derivative, (±)-6-benzyl-3,3-di­methyl-5-thioxo­morpholin-2-one, C13H15NO2S, this ring has a much flatter conformation that is midway between a boat and an envelope, with the di­methyl end being almost planar. The orientation of the benzyl group is `endo'. The di­thione derivative, (±)-6-benzyl-3,3-di­methyl­morpholine-2,5-di­thione, C13H15N­OS2, has two symmetry-independent mol­ecules, which show different puckering of the morpholine ring. One mol­ecule has a flattened envelope conformation distorted towards a screw-boat, while the conformation in the other mol­ecule is similar to that in the mono­thione derivative. Intermolecular hydrogen bonds link the mol­ecules in the three compounds, respectively, into centrosymmetric dimers, infinite chains, and dimers made up of one of each of the symmetry-independent mol­ecules.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270101003195/sk1460sup1.cif
Contains datablocks global, IV, V, VI

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270101003195/sk1460IVsup2.hkl
Contains datablock IV

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270101003195/sk1460Vsup3.hkl
Contains datablock V

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270101003195/sk1460VIsup4.hkl
Contains datablock VI

CCDC references: 164680; 164681; 164682

Comment top

Some years ago, we showed that diamides akin to compound (III) (see Scheme), which are conveniently prepared by the reaction of hydroxy acids with 3-amino-2H-azirines, can be cyclized by treatment with HCl gas in a non-nucleophilic solvent (Obrecht & Heimgartner, 1984, 1987; Heimgartner, 1991a; Heimgartner et al., 1999). This method, the so-called 'direct amide cyclization', has been used widely to prepare cyclic depsipeptides by lactone formation (Obrecht & Heimgartner, 1984, 1990; Magirius, 1995; Koch & Heimgartner, 2000; Koch et al., 2000). In the case of larger rings, the cyclization occurs via 1,3-oxazol-5(4H)-ones as intermediates and ring enlargement by intramolecular nucleophilic attack of the hydroxy group at the oxazolone C O group (Heimgartner et al., 1999). On the other hand, a mechanism via an intermediate oxonium ion is more likely for the formation of the six-membered morpholine-2,5-diones.

In connection with our investigations of 1,3-dipolar cycloadditions with thiocarbonyl compounds (cf. Heimgartner, 1986, 1991b; Linden et al., 1999; Mloston & Heimgartner, 2000), we also became interested in the thioanalogues of morpholinediones as CS dipolarophiles. The mono- and dithioanalogues are attractive models for the study of the chemoselectivity (dipolarophilicity) of different π-systems in 1,3-dipolar cycloadditions. The racemic morpholine-2,5-dione (IV) was prepared by following the described protocol (Obrecht & Heimgartner, 1987). Subsequent successive thionation with Lawesson reagent (LR) led almost quantitatively to the monothione (V) and then to the morpholine-2,5-dithione (VI), although the latter reaction was sluggish with a low yield. As part of the full characterization of compounds (IV), (V), and (VI), their low-temperature crystal structures have been determined. \sch

In each compound, the bond lengths and angles are generally within normal ranges. The amide CO and thioamide CS bonds in the dione, (IV), and the dithione, (VI), respectively, are longer than the corresponding ester CO and thioester CS bonds (Tables 1 and 3). This reflects the expected greater π-electron delocalization in (thio)amide groups compared with (thio)ester groups and is consistent with the trends for such groups derived from an examination of the Cambridge Structural Database (CSD, October 2000 release; Allen & Kennard, 1993). The angles at the O and N atoms of the morpholine rings (Tables 1, 3 and 5) are significantly larger than 120°, particularly in the presence of the ring flattening observed in the monothione, (V), and dithione, (VI), derivatives, as described below.

The morpholine ring of the dione, (IV), has puckering parameters (Cremer & Pople, 1975) of Q = 0.463 (2) Å, θ = 92.4 (2)° and ϕ = 133.4 (2)°, which represent a conformation midway between a boat (nearest ideal values: θ = 90, ϕ = 120°) and a twist-boat (θ = 90, ϕ = 150°) (Boeyens, 1978), where the boat ends are the two sp3 C atoms of the ring (Fig. 1) and the twist results from a slight non-planarity of the four atoms constituting the base of the boat. The r.m.s. deviation of O1, C2, N4 and C5 from their mean plane is 0.053 Å, while C3 and C6 deviate from this plane by 0.363 (3) and 0.416 (3) Å, respectively. The benzyl substituent is in the favoured 'exo' position.

The morpholine ring of the monothione derivative, (V), has a much flatter and less twisted boat conformation (Fig. 2). The two sp3 C atoms of the ring again form the ends of the boat, but the dimethyl end is almost co-planar with the base of the boat, so that the ring is distorted towards an envelope conformation. This is borne out by the ring puckering parameters of Q = 0.139 (2) Å, θ = 75.2 (8)° and ϕ = 298.3 (10)°. The value of ϕ is appropriate for either an envelope or boat conformation (nearest ideal value is 300°) (Boeyens, 1978), while θ lies approximately midway between the ideal values for the boat (90°) and envelope (54.7°) conformations. The r.m.s. deviation of O1, C2, N4 and C5 from their mean plane is only 0.002 Å, while C3 and C6 deviate from this plane by 0.069 (3) and 0.162 (3) Å, respectively. The orientation of the benzyl group is 'endo', which brings the phenyl ring into a position above the body of the morpholine ring.

The asymmetric unit of the dithione derivative, (VI), has two symmetry-independent molecules (Fig. 3) and PLATON (Spek, 2001) confirmed that there was no additional overlooked symmetry, although the molecules are approximately related by a non-crystallographic twofold axis. The two molecules have different puckering of the morpholine ring and the orientation of the phenyl ring about the C9—C10 bond (C29—C30 in molecule B) also differs by a twist of about 17°. The morpholine ring of molecule A has puckering parameters of Q = 0.185 (2) Å, θ = 62.8 (7)° and ϕ = 75.2 (8)°, which represent a conformation midway between that of a slightly flattened envelope (nearest ideal values: θ = 54.7, ϕ = 60°) and a screw-boat (θ = 67.5, ϕ = 90°) (Boeyens, 1978). In contrast to compounds (IV) and (V), it is not an sp3 C atom that is out of the plane, but the thioester C atom, C2. The r.m.s. deviation of O1, C3, N4, C5 and C6 from their mean plane is 0.022 Å, while C2 deviates from this plane by 0.250 (3) Å. The phenyl ring is positioned above the morpholine ring.

The morpholine ring in molecule B of (VI) has a flattened boat conformation distorted towards an envelope, similar to, but even flatter than the conformation observed in compound (V). The ring puckering parameters are Q = 0.097 (2) Å, θ = 101.6 (12)° and ϕ = 120.5 (12)°. Using the inverted molecule, which is also present in this racemic compound, θ = 78.4 (12)° and ϕ = 300.5 (12)°, which indicate a conformation similar to that observed for compound (V). As in (V), the two sp3 C atoms of the ring form the ends of the boat, with the dimethyl end being almost co-planar with the base of the boat. The r.m.s. deviation of O21, C22, N24 and C25 from their mean plane is only 0.0004 Å, while C23 and C26 deviate from this plane by 0.056 (3) and 0.108 (3) Å, respectively. The orientation of the benzyl group is 'endo', with the phenyl ring again being positioned above the morpholine ring.

There are only two structure reports cited in the CSD of compounds containing a morpholine-2,5-dione moiety, while there are no reports of any structures involving 5-thioxomorpholin-2-one or morpholine-2,5-dithione moieties. Both reported structures are simply substituted morpholine derivatives. The morpholine ring in 3-benzyl-6-isopropylmorpholine-2,5-dione was reported as having a boat conformation with the sp3 C atoms forming the boat ends (Bolte & Egert, 1994). However, a closer examination of the puckering parameters [Q = 0.494 (2) Å, θ = 93.1 (2)° and ϕ = 129.3 (2)°] shows that the ring has an unflattened conformation that lies midway between a boat and a twist-boat, and which is virtually identical to that in compound (IV). Conversely, in 3-benzyl-3-hydroxy-6-methylamino-6-(2-methylpropyl)morpholine-2,5-dione (Iijima et al., 1992), the morpholine ring has an almost completely flattened boat conformation with the two sp3 C atoms being only 0.086 and 0.078 Å from the plane defined by the other four ring atoms, which are all 0.002 Å from their mean plane.

While a comparison of the structures of compounds (IV), (V) and (VI) might induce one to conclude that an increasing number of thione substituents in the morpholine ring leads to a greater flattening of the ring, the two previously reported structures of morpholine-2,5-dione derivatives contradict this hypothesis and suggest that the cause of the ring flattening is not necessarily related to the degree of thione substitution, but to other effects which cannot readily be deduced from the small number of determined structures of this class.

The amide N—H of compound (IV) forms an intermolecular hydrogen bond with the amide O atom of an adjacent molecule (Table 2). This acceptor molecule then donates back to the first molecule, thereby linking pairs of molecules into centrosymmetric dimers whose interactions can be described by the graph set motif (Bernstein et al., 1995) of R22(8). In the monothione derivative, (V), a simple change from the ester group of (IV) to a thioester group has dramatically altered the hydrogen bonding pattern (Table 4). The acceptor atom is now the morpholine ring O atom of a neighbouring molecule and the intermolecular interactions link the molecules of (V) into infinite one-dimensional chains which run parallel to the [010] direction and have a graph set motif of C(5). In compound (VI), the hydrogen bonding pattern is similar to that in compound (IV). The acceptor atom is the thioamide S atom of the other symmetry-independent molecule in the asymmetric unit. This acceptor molecule then donates back to the first molecule, thus forming hydrogen-bonded dimers comprised of one of each of the symmetry-independent molecules (Table 6, Fig. 3). These interactions can again be described by the graph set motif of R22(8).

Related literature top

For related literature, see: Allen & Kennard (1993); Bernstein et al. (1995); Boeyens (1978); Bolte & Egert (1994); Cremer & Pople (1975); Heimgartner (1986, 1991a, 1991b); Heimgartner et al. (1999); Iijima et al. (1992); Koch & Heimgartner (2000); Koch, Linden & Heimgartner (2000); Linden et al. (1999); Magirius (1995); Mloston & Heimgartner (2000); Obrecht & Heimgartner (1984, 1987, 1990); Scheibye et al. (1978); Spek (2001).

Experimental top

Compound (III) was obtained in 92% yield by the reaction of D,L-phenyllactic acid, (I) (408 mg, 2.46 mmol), and 2,2,N-trimethyl-N-phenyl-2H-azirin-3-amine, (II) (472 mg, 2.71 mmol), in acetonitrile (20 ml) at room temperature following a known protocol (Obrecht & Heimgartner, 1987). Treatment of a solution of (III) (2.19 g, 6.44 mmol) in toluene (300 ml) at 373 K with dry HCl gas for 15 min yielded, after chromatography (silica gel, dichloromethane/diethylether 6:1) and crystallization from diethylether, compound (IV) in 27% yield as colourless plates (m.p. 437–438 K). Lawesson reagent (Scheibye et al., 1978) (240 mg, 0.59 mmol) was added to a solution of (IV) (276 mg, 1.19 mmol) in toluene (15 ml), and the mixture was heated to 373 K for 30 min. After chromatography (silica gel, dichloromethane/hexane 3:2) and crystallization from dichloromethane/diethylether, compound (V) was obtained in 96% yield as colourless needles (m.p. 448–449 K). Heating a mixture of (V) (95 mg, 0.38 mmol) and Lawesson reagent (3.84 mg, 0.95 mmol) in toluene (10 ml) for 2 d under reflux led, after chromatographic separation (silica gel, dichloromethane/hexane 1:1), to compound (VI) in 28% yield as yellow prisms (m.p. 396–397 K). Suitable single crystals of (VI) were obtained by recrystallization from diethylether/dichloromethane/hexane.

Refinement top

For each compound, the methyl H atoms were constrained to an ideal geometry with Uiso(H) = 1.5Ueq(C), but were allowed to rotate freely about the C—C bonds. The positions of the amino H atoms were refined freely along with individual isotropic displacement parameters. All other H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms with Uiso(H) = 1.2Ueq(C). For (V), the ψ-scans for three reflections showed a more severe absorption profile than that which is theoretically predicted and this is attributed to the anisotropic shape of the crystal. A test refinement using uncorrected reflection data produced virtually identical results.

Computing details top

For all compounds, data collection: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1991); cell refinement: MSC/AFC Diffractometer Control Software; data reduction: TEXSAN (Molecular Structure Corporation, 1999). Program(s) used to solve structure: SHELXS97 (Sheldrick, 1997) for (IV); SIR92 (Altomare et al., 1994) for (V), (VI). For all compounds, program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2001).

Figures top
[Figure 1] Fig. 1. The molecular structure of (IV) showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.
[Figure 2] Fig. 2. The molecular structure of (V) showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.
[Figure 3] Fig. 3. The molecular structure of both symmetry-independent molecules of (VI) showing the atom-labelling scheme and the hydrogen bonds (dashed lines). Molecule A is on the left. Displacement ellipsoids are drawn at the 30% probability level. H atoms are represented by circles of arbitrary size.
(IV) 6-benzyl-3,3-dimethylmorpholine-2,5-dione top
Crystal data top
C13H15NO3F(000) = 248
Mr = 233.27Dx = 1.281 Mg m3
Triclinic, P1Melting point = 437–438 K
a = 5.699 (2) ÅMo Kα radiation, λ = 0.71069 Å
b = 10.347 (3) ÅCell parameters from 25 reflections
c = 11.327 (4) Åθ = 19.0–20.0°
α = 67.51 (2)°µ = 0.09 mm1
β = 80.38 (3)°T = 173 K
γ = 80.35 (3)°Plate, colourless
V = 604.5 (4) Å30.50 × 0.38 × 0.12 mm
Z = 2
Data collection top
Rigaku AFC-5R
diffractometer
Rint = 0.025
Radiation source: Rigaku rotating anode generatorθmax = 27.5°, θmin = 3.4°
Graphite monochromatorh = 77
ω–2θ scansk = 130
2927 measured reflectionsl = 1413
2773 independent reflections3 standard reflections every 150 reflections
1859 reflections with I > 2σ(I) intensity decay: none
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.053P)2 + 0.1854P]
where P = (Fo2 + 2Fc2)/3
2773 reflections(Δ/σ)max = 0.001
160 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = 0.23 e Å3
Crystal data top
C13H15NO3γ = 80.35 (3)°
Mr = 233.27V = 604.5 (4) Å3
Triclinic, P1Z = 2
a = 5.699 (2) ÅMo Kα radiation
b = 10.347 (3) ŵ = 0.09 mm1
c = 11.327 (4) ÅT = 173 K
α = 67.51 (2)°0.50 × 0.38 × 0.12 mm
β = 80.38 (3)°
Data collection top
Rigaku AFC-5R
diffractometer
Rint = 0.025
2927 measured reflections3 standard reflections every 150 reflections
2773 independent reflections intensity decay: none
1859 reflections with I > 2σ(I)
Refinement top
R[F2 > 2σ(F2)] = 0.0470 restraints
wR(F2) = 0.130H atoms treated by a mixture of independent and constrained refinement
S = 1.02Δρmax = 0.27 e Å3
2773 reflectionsΔρmin = 0.23 e Å3
160 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.4371 (2)0.10417 (12)0.63704 (12)0.0321 (3)
O20.7608 (2)0.11627 (14)0.50074 (14)0.0411 (4)
O50.0837 (3)0.34956 (14)0.63550 (14)0.0520 (5)
N40.2406 (3)0.36142 (15)0.48846 (14)0.0283 (3)
H40.194 (4)0.451 (2)0.447 (2)0.043 (6)*
C20.5594 (3)0.16503 (17)0.52203 (17)0.0273 (4)
C30.4341 (3)0.29250 (17)0.42359 (16)0.0244 (4)
C50.1008 (3)0.29338 (18)0.59202 (17)0.0331 (4)
C60.1783 (3)0.13724 (18)0.65703 (17)0.0307 (4)
H60.09850.08270.62210.037*
C70.3359 (3)0.24227 (19)0.33272 (17)0.0322 (4)
H710.25690.32320.26760.048*
H720.21990.17550.38200.048*
H730.46800.19590.29040.048*
C80.6138 (3)0.39764 (19)0.34989 (19)0.0357 (4)
H810.74420.35410.30420.054*
H820.67930.42530.41030.054*
H830.53350.48110.28780.054*
C90.1099 (4)0.0907 (2)0.80091 (18)0.0471 (6)
H910.19720.14110.83540.057*
H920.06360.11860.81770.057*
C100.1624 (3)0.06485 (18)0.87193 (16)0.0308 (4)
C110.3570 (4)0.1186 (2)0.94168 (18)0.0372 (5)
H110.46290.05650.94100.045*
C120.4007 (4)0.2604 (2)1.01209 (19)0.0421 (5)
H120.53410.29511.06030.050*
C130.2510 (4)0.3511 (2)1.01230 (19)0.0422 (5)
H130.27870.44881.06140.051*
C140.0603 (4)0.2996 (2)0.9409 (2)0.0468 (5)
H140.04170.36260.93930.056*
C150.0158 (4)0.1580 (2)0.87165 (19)0.0399 (5)
H150.11730.12400.82320.048*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0329 (7)0.0264 (6)0.0288 (6)0.0042 (5)0.0046 (5)0.0038 (5)
O20.0263 (7)0.0353 (7)0.0512 (9)0.0046 (6)0.0026 (6)0.0083 (7)
O50.0594 (10)0.0288 (7)0.0400 (8)0.0160 (7)0.0195 (7)0.0009 (6)
N40.0347 (8)0.0184 (7)0.0246 (7)0.0050 (6)0.0020 (6)0.0055 (6)
C20.0266 (9)0.0239 (8)0.0309 (9)0.0000 (7)0.0052 (7)0.0098 (7)
C30.0246 (8)0.0210 (8)0.0249 (8)0.0010 (6)0.0002 (6)0.0080 (6)
C50.0395 (10)0.0242 (9)0.0271 (9)0.0068 (8)0.0030 (8)0.0070 (7)
C60.0341 (9)0.0236 (8)0.0272 (9)0.0050 (7)0.0033 (7)0.0077 (7)
C70.0367 (10)0.0311 (9)0.0288 (9)0.0010 (8)0.0038 (7)0.0119 (8)
C80.0339 (10)0.0283 (9)0.0399 (10)0.0055 (8)0.0006 (8)0.0081 (8)
C90.0725 (15)0.0259 (10)0.0300 (10)0.0051 (10)0.0101 (10)0.0068 (8)
C100.0408 (10)0.0243 (8)0.0212 (8)0.0009 (7)0.0062 (7)0.0075 (7)
C110.0461 (11)0.0377 (10)0.0317 (10)0.0124 (9)0.0005 (8)0.0153 (9)
C120.0435 (11)0.0463 (12)0.0305 (10)0.0010 (9)0.0109 (8)0.0074 (9)
C130.0525 (13)0.0257 (9)0.0352 (10)0.0007 (9)0.0001 (9)0.0003 (8)
C140.0499 (13)0.0371 (11)0.0535 (13)0.0173 (10)0.0045 (10)0.0120 (10)
C150.0341 (10)0.0427 (11)0.0376 (10)0.0007 (8)0.0090 (8)0.0081 (9)
Geometric parameters (Å, º) top
O1—C21.340 (2)C8—H820.9800
O1—C61.457 (2)C8—H830.9800
O2—C21.199 (2)C9—C101.502 (3)
O5—C51.236 (2)C9—H910.9900
N4—C51.323 (2)C9—H920.9900
N4—C31.460 (2)C10—C151.378 (3)
N4—H40.88 (2)C10—C111.383 (3)
C2—C31.522 (2)C11—C121.378 (3)
C3—C81.524 (2)C11—H110.9500
C3—C71.530 (3)C12—C131.369 (3)
C5—C61.519 (2)C12—H120.9500
C6—C91.513 (3)C13—C141.374 (3)
C6—H61.0000C13—H130.9500
C7—H710.9800C14—C151.375 (3)
C7—H720.9800C14—H140.9500
C7—H730.9800C15—H150.9500
C8—H810.9800
C2—O1—C6120.53 (13)C3—C8—H82109.5
C5—N4—C3124.06 (14)H81—C8—H82109.5
C5—N4—H4117.3 (14)C3—C8—H83109.5
C3—N4—H4117.2 (14)H81—C8—H83109.5
O2—C2—O1118.81 (16)H82—C8—H83109.5
O2—C2—C3122.98 (16)C10—C9—C6114.08 (16)
O1—C2—C3118.20 (14)C10—C9—H91108.7
N4—C3—C2110.10 (13)C6—C9—H91108.7
N4—C3—C8108.03 (14)C10—C9—H92108.7
C2—C3—C8108.97 (14)C6—C9—H92108.7
N4—C3—C7110.62 (14)H91—C9—H92107.6
C2—C3—C7108.25 (14)C15—C10—C11118.01 (17)
C8—C3—C7110.87 (15)C15—C10—C9121.09 (19)
O5—C5—N4123.78 (16)C11—C10—C9120.89 (19)
O5—C5—C6120.30 (16)C12—C11—C10121.43 (19)
N4—C5—C6115.92 (15)C12—C11—H11119.3
O1—C6—C9106.64 (16)C10—C11—H11119.3
O1—C6—C5111.79 (15)C13—C12—C11119.72 (19)
C9—C6—C5110.50 (15)C13—C12—H12120.1
O1—C6—H6109.3C11—C12—H12120.1
C9—C6—H6109.3C12—C13—C14119.49 (19)
C5—C6—H6109.3C12—C13—H13120.3
C3—C7—H71109.5C14—C13—H13120.3
C3—C7—H72109.5C13—C14—C15120.7 (2)
H71—C7—H72109.5C13—C14—H14119.7
C3—C7—H73109.5C15—C14—H14119.7
H71—C7—H73109.5C14—C15—C10120.63 (19)
H72—C7—H73109.5C14—C15—H15119.7
C3—C8—H81109.5C10—C15—H15119.7
C6—O1—C2—O2165.28 (16)N4—C5—C6—O128.5 (2)
C6—O1—C2—C314.0 (2)O5—C5—C6—C933.3 (3)
C5—N4—C3—C237.3 (2)N4—C5—C6—C9147.15 (19)
C5—N4—C3—C8156.18 (18)O1—C6—C9—C1062.9 (2)
C5—N4—C3—C782.3 (2)C5—C6—C9—C10175.40 (18)
O2—C2—C3—N4156.84 (17)C6—C9—C10—C1577.5 (3)
O1—C2—C3—N423.9 (2)C6—C9—C10—C11103.7 (2)
O2—C2—C3—C838.5 (2)C15—C10—C11—C121.8 (3)
O1—C2—C3—C8142.19 (16)C9—C10—C11—C12176.93 (18)
O2—C2—C3—C782.1 (2)C10—C11—C12—C130.9 (3)
O1—C2—C3—C797.14 (18)C11—C12—C13—C140.8 (3)
C3—N4—C5—O5168.91 (19)C12—C13—C14—C151.4 (3)
C3—N4—C5—C610.6 (3)C13—C14—C15—C100.4 (3)
C2—O1—C6—C9162.18 (16)C11—C10—C15—C141.2 (3)
C2—O1—C6—C541.3 (2)C9—C10—C15—C14177.55 (19)
O5—C5—C6—O1151.95 (18)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N4—H4···O5i0.88 (2)1.95 (2)2.833 (2)176 (2)
Symmetry code: (i) x, y+1, z+1.
(V) 6-benzyl-3,3-dimethyl-5-thioxomorpholin-2-one top
Crystal data top
C13H15NO2SDx = 1.335 Mg m3
Mr = 249.33Melting point = 448–449 K
Monoclinic, P21/nMo Kα radiation, λ = 0.71069 Å
a = 13.901 (4) ÅCell parameters from 24 reflections
b = 5.843 (6) Åθ = 18.0–20.0°
c = 16.559 (5) ŵ = 0.25 mm1
β = 112.70 (2)°T = 173 K
V = 1240.7 (13) Å3Needle, colourless
Z = 40.50 × 0.20 × 0.15 mm
F(000) = 528
Data collection top
Rigaku AFC-5R
diffractometer
1926 reflections with I > 2σ(I)
Radiation source: Rigaku rotating anode generatorRint = 0.034
Graphite monochromatorθmax = 27.5°, θmin = 2.7°
ω–2θ scansh = 018
Absorption correction: ψ scan
(North et al., 1968)
k = 07
Tmin = 0.696, Tmax = 0.963l = 2119
3261 measured reflections3 standard reflections every 150 reflections
2854 independent reflections intensity decay: none
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H atoms treated by a mixture of independent and constrained refinement
S = 1.04 w = 1/[σ2(Fo2) + (0.082P)2]
where P = (Fo2 + 2Fc2)/3
2854 reflections(Δ/σ)max = 0.001
160 parametersΔρmax = 0.53 e Å3
0 restraintsΔρmin = 0.36 e Å3
Crystal data top
C13H15NO2SV = 1240.7 (13) Å3
Mr = 249.33Z = 4
Monoclinic, P21/nMo Kα radiation
a = 13.901 (4) ŵ = 0.25 mm1
b = 5.843 (6) ÅT = 173 K
c = 16.559 (5) Å0.50 × 0.20 × 0.15 mm
β = 112.70 (2)°
Data collection top
Rigaku AFC-5R
diffractometer
1926 reflections with I > 2σ(I)
Absorption correction: ψ scan
(North et al., 1968)
Rint = 0.034
Tmin = 0.696, Tmax = 0.9633 standard reflections every 150 reflections
3261 measured reflections intensity decay: none
2854 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0520 restraints
wR(F2) = 0.151H atoms treated by a mixture of independent and constrained refinement
S = 1.04Δρmax = 0.53 e Å3
2854 reflectionsΔρmin = 0.36 e Å3
160 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S50.62224 (5)0.06702 (12)0.63839 (4)0.0320 (2)
O10.81373 (12)0.4508 (3)0.64124 (10)0.0253 (4)
O20.98048 (14)0.4688 (3)0.66856 (13)0.0366 (5)
N40.81735 (15)0.0209 (3)0.65326 (13)0.0234 (4)
H40.8240 (18)0.173 (5)0.6609 (15)0.022 (6)*
C20.90599 (18)0.3483 (4)0.65683 (15)0.0250 (5)
C30.91534 (17)0.0890 (4)0.66001 (15)0.0230 (5)
C50.72653 (17)0.0749 (4)0.63857 (14)0.0233 (5)
C60.71576 (17)0.3293 (4)0.62064 (15)0.0237 (5)
H60.68110.39600.65810.028*
C71.00011 (18)0.0211 (4)0.74852 (15)0.0267 (5)
H811.00870.14550.75100.040*
H820.97950.07160.79600.040*
H831.06620.09400.75500.040*
C80.94441 (19)0.0124 (4)0.58386 (16)0.0276 (5)
H711.00940.08750.58840.041*
H720.88850.05480.52830.041*
H730.95400.15400.58610.041*
C90.64598 (18)0.3850 (4)0.52460 (15)0.0278 (5)
H910.57730.31040.50990.033*
H920.63430.55240.51870.033*
C100.69169 (18)0.3079 (4)0.45982 (15)0.0255 (5)
C110.66486 (18)0.0969 (4)0.41769 (15)0.0269 (5)
H110.61790.00100.43030.032*
C120.7063 (2)0.0288 (5)0.35738 (15)0.0328 (6)
H120.68690.11460.32860.039*
C130.7756 (2)0.1693 (5)0.33920 (16)0.0369 (7)
H130.80400.12170.29820.044*
C140.8036 (2)0.3788 (5)0.38066 (17)0.0367 (6)
H140.85160.47480.36850.044*
C150.7611 (2)0.4480 (5)0.44020 (16)0.0300 (6)
H150.77960.59290.46790.036*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S50.0266 (3)0.0407 (4)0.0339 (4)0.0049 (3)0.0176 (3)0.0004 (3)
O10.0260 (8)0.0238 (8)0.0272 (8)0.0013 (7)0.0115 (7)0.0012 (7)
O20.0316 (10)0.0290 (10)0.0511 (11)0.0073 (8)0.0181 (9)0.0009 (8)
N40.0254 (10)0.0197 (10)0.0273 (10)0.0001 (8)0.0127 (8)0.0007 (8)
C20.0287 (12)0.0260 (12)0.0223 (11)0.0009 (10)0.0121 (9)0.0002 (9)
C30.0212 (11)0.0253 (12)0.0253 (11)0.0023 (9)0.0121 (9)0.0020 (9)
C50.0250 (11)0.0327 (13)0.0147 (10)0.0003 (10)0.0105 (9)0.0017 (9)
C60.0227 (11)0.0300 (12)0.0221 (11)0.0000 (10)0.0125 (9)0.0021 (9)
C70.0267 (12)0.0306 (13)0.0233 (11)0.0011 (10)0.0101 (10)0.0003 (9)
C80.0276 (12)0.0330 (13)0.0258 (12)0.0027 (10)0.0141 (10)0.0010 (10)
C90.0240 (11)0.0343 (14)0.0263 (12)0.0069 (10)0.0110 (10)0.0015 (10)
C100.0235 (11)0.0318 (13)0.0203 (11)0.0055 (10)0.0074 (9)0.0071 (9)
C110.0254 (11)0.0323 (14)0.0220 (11)0.0002 (10)0.0081 (9)0.0036 (10)
C120.0345 (14)0.0387 (15)0.0202 (12)0.0067 (11)0.0049 (10)0.0033 (10)
C130.0347 (14)0.0563 (18)0.0218 (12)0.0131 (13)0.0132 (11)0.0028 (12)
C140.0293 (13)0.0540 (18)0.0301 (13)0.0018 (13)0.0152 (11)0.0131 (13)
C150.0320 (13)0.0327 (13)0.0236 (12)0.0006 (11)0.0088 (10)0.0035 (10)
Geometric parameters (Å, º) top
S5—C51.669 (2)C8—H720.9800
O1—C21.347 (3)C8—H730.9800
O1—C61.455 (3)C9—C101.511 (3)
O2—C21.204 (3)C9—H910.9900
N4—C31.470 (3)C9—H920.9900
N4—C51.315 (3)C10—C111.394 (4)
N4—H40.90 (3)C10—C151.396 (4)
C2—C31.520 (4)C11—C121.389 (4)
C3—C71.536 (3)C11—H110.9500
C3—C81.532 (3)C12—C131.385 (4)
C5—C61.512 (4)C12—H120.9500
C6—C91.544 (3)C13—C141.384 (4)
C6—H61.0000C13—H130.9500
C7—H810.9800C14—C151.391 (4)
C7—H820.9800C14—H140.9500
C7—H830.9800C15—H150.9500
C8—H710.9800
C2—O1—C6124.30 (19)C3—C8—H72109.5
C5—N4—C3128.6 (2)H71—C8—H72109.5
C5—N4—H4119.2 (16)C3—C8—H73109.5
C3—N4—H4112.3 (16)H71—C8—H73109.5
O2—C2—O1117.8 (2)H72—C8—H73109.5
O2—C2—C3121.4 (2)C10—C9—C6113.52 (19)
O1—C2—C3120.8 (2)C10—C9—H91108.9
N4—C3—C2111.61 (19)C6—C9—H91108.9
N4—C3—C8109.92 (19)C10—C9—H92108.9
C2—C3—C8107.99 (19)C6—C9—H92108.9
N4—C3—C7107.86 (18)H91—C9—H92107.7
C2—C3—C7108.32 (19)C11—C10—C15118.5 (2)
C8—C3—C7111.15 (19)C11—C10—C9120.9 (2)
N4—C5—C6118.0 (2)C15—C10—C9120.5 (2)
N4—C5—S5124.1 (2)C12—C11—C10120.5 (2)
C6—C5—S5117.90 (17)C12—C11—H11119.7
O1—C6—C5114.91 (19)C10—C11—H11119.7
O1—C6—C9107.32 (18)C13—C12—C11120.2 (2)
C5—C6—C9112.62 (19)C13—C12—H12119.9
O1—C6—H6107.2C11—C12—H12119.9
C5—C6—H6107.2C14—C13—C12120.2 (2)
C9—C6—H6107.2C14—C13—H13119.9
C3—C7—H81109.5C12—C13—H13119.9
C3—C7—H82109.5C13—C14—C15119.6 (3)
H81—C7—H82109.5C13—C14—H14120.2
C3—C7—H83109.5C15—C14—H14120.2
H81—C7—H83109.5C14—C15—C10121.0 (3)
H82—C7—H83109.5C14—C15—H15119.5
C3—C8—H71109.5C10—C15—H15119.5
C6—O1—C2—O2176.1 (2)S5—C5—C6—O1166.56 (14)
C6—O1—C2—C34.3 (3)N4—C5—C6—C9109.8 (2)
C5—N4—C3—C25.8 (3)S5—C5—C6—C970.1 (2)
C5—N4—C3—C8114.0 (2)O1—C6—C9—C1061.4 (3)
C5—N4—C3—C7124.7 (2)C5—C6—C9—C1066.0 (3)
O2—C2—C3—N4173.9 (2)C6—C9—C10—C1194.7 (3)
O1—C2—C3—N45.7 (3)C6—C9—C10—C1586.0 (3)
O2—C2—C3—C865.2 (3)C15—C10—C11—C120.2 (3)
O1—C2—C3—C8115.2 (2)C9—C10—C11—C12179.2 (2)
O2—C2—C3—C755.3 (3)C10—C11—C12—C130.7 (4)
O1—C2—C3—C7124.3 (2)C11—C12—C13—C140.3 (4)
C3—N4—C5—C64.0 (3)C12—C13—C14—C150.5 (4)
C3—N4—C5—S5176.09 (17)C13—C14—C15—C100.9 (4)
C2—O1—C6—C514.0 (3)C11—C10—C15—C140.6 (3)
C2—O1—C6—C9112.1 (2)C9—C10—C15—C14180.0 (2)
N4—C5—C6—O113.5 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N4—H4···O1i0.90 (3)2.22 (3)3.092 (4)164 (2)
Symmetry code: (i) x, y1, z.
(VI) 6-benzyl-3,3-dimethylmorpholine-2,5-dithione top
Crystal data top
C13H15NOS2F(000) = 560
Mr = 265.39Dx = 1.327 Mg m3
Triclinic, P1Melting point = 396–397 K
a = 8.6915 (13) ÅMo Kα radiation, λ = 0.71069 Å
b = 11.896 (3) ÅCell parameters from 25 reflections
c = 13.661 (4) Åθ = 19.0–20.0°
α = 75.62 (2)°µ = 0.38 mm1
β = 76.211 (16)°T = 173 K
γ = 84.971 (18)°Prism, yellow
V = 1328.2 (6) Å30.48 × 0.40 × 0.30 mm
Z = 4
Data collection top
Rigaku AFC-5R
diffractometer
4424 reflections with I > 2σ(I)
Radiation source: Rigaku rotating anode generatorRint = 0.021
Graphite monochromatorθmax = 27.5°, θmin = 2.6°
ω–2θ scansh = 1111
Absorption correction: ψ scan
(North et al., 1968)
k = 150
Tmin = 0.781, Tmax = 0.891l = 1717
6399 measured reflections3 standard reflections every 150 reflections
6101 independent reflections intensity decay: none
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0823P)2 + 0.0825P]
where P = (Fo2 + 2Fc2)/3
6101 reflections(Δ/σ)max = 0.001
319 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = 0.41 e Å3
Crystal data top
C13H15NOS2γ = 84.971 (18)°
Mr = 265.39V = 1328.2 (6) Å3
Triclinic, P1Z = 4
a = 8.6915 (13) ÅMo Kα radiation
b = 11.896 (3) ŵ = 0.38 mm1
c = 13.661 (4) ÅT = 173 K
α = 75.62 (2)°0.48 × 0.40 × 0.30 mm
β = 76.211 (16)°
Data collection top
Rigaku AFC-5R
diffractometer
4424 reflections with I > 2σ(I)
Absorption correction: ψ scan
(North et al., 1968)
Rint = 0.021
Tmin = 0.781, Tmax = 0.8913 standard reflections every 150 reflections
6399 measured reflections intensity decay: none
6101 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0490 restraints
wR(F2) = 0.142H atoms treated by a mixture of independent and constrained refinement
S = 1.05Δρmax = 0.54 e Å3
6101 reflectionsΔρmin = 0.41 e Å3
319 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S21.31149 (7)0.61456 (6)0.69359 (6)0.04615 (19)
S50.78907 (7)0.39220 (5)0.58055 (6)0.03978 (18)
O11.02831 (18)0.60055 (13)0.67956 (16)0.0411 (4)
N41.0494 (2)0.37797 (15)0.65169 (16)0.0297 (4)
H41.064 (4)0.310 (3)0.634 (2)0.057 (9)*
C21.1665 (3)0.54387 (19)0.68373 (19)0.0322 (5)
C31.1772 (2)0.41325 (18)0.69084 (19)0.0296 (5)
C50.9228 (2)0.43916 (18)0.62984 (19)0.0318 (5)
C60.8992 (3)0.56035 (19)0.6472 (2)0.0381 (6)
H60.89190.61360.57910.046*
C71.3348 (3)0.3776 (2)0.6257 (2)0.0355 (5)
H711.34720.42200.55370.053*
H721.33540.29450.62830.053*
H731.42250.39350.65350.053*
C81.1591 (3)0.3487 (2)0.8052 (2)0.0429 (6)
H811.16350.26480.81090.064*
H821.05700.37090.84570.064*
H831.24520.36930.83200.064*
C90.7450 (3)0.5789 (2)0.7248 (3)0.0504 (8)
H910.73670.66120.72880.060*
H920.65470.56460.69740.060*
C100.7289 (3)0.5037 (2)0.8330 (2)0.0474 (7)
C110.6270 (3)0.4108 (2)0.8676 (3)0.0544 (8)
H110.57190.39230.82170.065*
C120.6056 (4)0.3452 (3)0.9691 (3)0.0633 (9)
H120.53500.28250.99190.076*
C130.6837 (4)0.3690 (3)1.0358 (3)0.0679 (10)
H130.66810.32341.10500.082*
C140.7868 (4)0.4606 (3)1.0026 (3)0.0729 (11)
H140.84260.47771.04880.088*
C150.8079 (3)0.5266 (3)0.9026 (3)0.0617 (9)
H150.87830.58940.88060.074*
S220.51036 (7)0.14157 (5)0.71819 (7)0.0507 (2)
S251.14229 (6)0.11719 (5)0.57744 (5)0.03136 (15)
O210.80999 (16)0.12851 (12)0.68707 (13)0.0299 (3)
N240.83142 (19)0.10772 (15)0.62064 (14)0.0252 (4)
H240.838 (3)0.186 (2)0.598 (2)0.039 (7)*
C220.6729 (2)0.06953 (18)0.68532 (18)0.0283 (4)
C230.6698 (2)0.06227 (17)0.65390 (16)0.0246 (4)
C250.9671 (2)0.05103 (18)0.62203 (16)0.0246 (4)
C260.9652 (2)0.07851 (18)0.66533 (18)0.0278 (4)
H261.03810.11520.61260.033*
C270.5915 (3)0.10592 (19)0.56134 (18)0.0303 (5)
H2710.59110.19100.54160.045*
H2720.48230.07960.58060.045*
H2730.65110.07510.50270.045*
C280.5812 (3)0.11054 (19)0.74677 (17)0.0302 (5)
H2810.47020.08810.76570.045*
H2820.58620.19540.72830.045*
H2830.63060.07890.80570.045*
C291.0253 (3)0.11551 (19)0.76561 (18)0.0310 (5)
H2911.02760.20130.78800.037*
H2921.13520.08950.75170.037*
C300.9237 (3)0.06613 (19)0.85260 (17)0.0295 (5)
C310.9515 (3)0.0432 (2)0.86368 (18)0.0340 (5)
H311.03760.08620.81730.041*
C320.8556 (3)0.0904 (2)0.94128 (19)0.0393 (5)
H320.87600.16520.94750.047*
C330.7303 (3)0.0285 (2)1.00955 (19)0.0388 (5)
H330.66400.06091.06240.047*
C340.7020 (3)0.0810 (2)1.00048 (19)0.0401 (6)
H340.61690.12411.04790.048*
C350.7973 (3)0.1280 (2)0.92259 (19)0.0356 (5)
H350.77650.20280.91680.043*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S20.0322 (3)0.0366 (3)0.0781 (5)0.0035 (3)0.0174 (3)0.0235 (3)
S50.0270 (3)0.0261 (3)0.0668 (4)0.0026 (2)0.0219 (3)0.0006 (3)
O10.0221 (7)0.0232 (8)0.0799 (13)0.0028 (6)0.0092 (8)0.0189 (8)
N40.0234 (9)0.0205 (8)0.0481 (11)0.0019 (7)0.0135 (8)0.0090 (8)
C20.0234 (10)0.0277 (11)0.0460 (13)0.0001 (8)0.0065 (9)0.0110 (10)
C30.0228 (10)0.0238 (10)0.0456 (13)0.0021 (8)0.0126 (9)0.0108 (9)
C50.0189 (10)0.0218 (10)0.0509 (14)0.0010 (8)0.0090 (9)0.0007 (9)
C60.0209 (10)0.0210 (10)0.0709 (17)0.0007 (8)0.0136 (11)0.0051 (10)
C70.0224 (10)0.0320 (11)0.0557 (15)0.0054 (9)0.0137 (10)0.0140 (11)
C80.0488 (15)0.0337 (12)0.0492 (15)0.0037 (11)0.0192 (12)0.0063 (11)
C90.0236 (11)0.0232 (11)0.098 (2)0.0060 (9)0.0030 (13)0.0142 (13)
C100.0250 (11)0.0292 (12)0.084 (2)0.0027 (9)0.0073 (12)0.0268 (13)
C110.0348 (14)0.0382 (14)0.090 (2)0.0054 (11)0.0092 (14)0.0185 (15)
C120.0495 (17)0.0443 (16)0.092 (3)0.0110 (14)0.0005 (17)0.0217 (17)
C130.065 (2)0.061 (2)0.073 (2)0.0064 (17)0.0126 (17)0.0337 (18)
C140.064 (2)0.086 (3)0.076 (2)0.0168 (19)0.0122 (18)0.054 (2)
C150.0458 (16)0.0567 (18)0.085 (2)0.0176 (14)0.0164 (16)0.0460 (18)
S220.0257 (3)0.0275 (3)0.0941 (6)0.0038 (2)0.0092 (3)0.0085 (3)
S250.0180 (2)0.0334 (3)0.0425 (3)0.0014 (2)0.0002 (2)0.0147 (2)
O210.0208 (7)0.0213 (7)0.0493 (9)0.0018 (6)0.0092 (7)0.0110 (6)
N240.0186 (8)0.0228 (9)0.0340 (10)0.0014 (7)0.0042 (7)0.0077 (7)
C220.0200 (9)0.0234 (10)0.0427 (12)0.0025 (8)0.0063 (9)0.0117 (9)
C230.0160 (9)0.0231 (10)0.0341 (11)0.0008 (7)0.0032 (8)0.0086 (8)
C250.0201 (9)0.0279 (10)0.0277 (10)0.0015 (8)0.0027 (8)0.0133 (8)
C260.0160 (9)0.0274 (10)0.0419 (12)0.0043 (8)0.0044 (8)0.0154 (9)
C270.0246 (10)0.0324 (11)0.0355 (12)0.0038 (8)0.0079 (9)0.0113 (9)
C280.0281 (11)0.0288 (11)0.0321 (11)0.0035 (9)0.0028 (9)0.0094 (9)
C290.0247 (10)0.0265 (10)0.0422 (13)0.0065 (8)0.0088 (9)0.0099 (9)
C300.0246 (10)0.0307 (11)0.0338 (12)0.0053 (8)0.0104 (9)0.0072 (9)
C310.0313 (12)0.0359 (12)0.0353 (12)0.0018 (9)0.0101 (10)0.0065 (10)
C320.0421 (13)0.0390 (13)0.0411 (13)0.0007 (11)0.0126 (11)0.0148 (11)
C330.0395 (13)0.0455 (14)0.0319 (12)0.0045 (11)0.0071 (10)0.0130 (11)
C340.0346 (12)0.0462 (14)0.0343 (13)0.0032 (11)0.0025 (10)0.0042 (11)
C350.0324 (12)0.0310 (11)0.0416 (13)0.0002 (9)0.0084 (10)0.0053 (10)
Geometric parameters (Å, º) top
S2—C21.624 (2)S22—C221.628 (2)
S5—C51.670 (2)S25—C251.685 (2)
O1—C21.331 (3)O21—C221.331 (2)
O1—C61.455 (3)O21—C261.458 (2)
N4—C51.319 (3)N24—C251.308 (3)
N4—C31.473 (3)N24—C231.476 (2)
N4—H40.89 (3)N24—H240.91 (3)
C2—C31.529 (3)C22—C231.519 (3)
C3—C71.534 (3)C23—C281.533 (3)
C3—C81.538 (3)C23—C271.534 (3)
C5—C61.507 (3)C25—C261.507 (3)
C6—C91.534 (3)C26—C291.531 (3)
C6—H61.0000C26—H261.0000
C7—H710.9800C27—H2710.9800
C7—H720.9800C27—H2720.9800
C7—H730.9800C27—H2730.9800
C8—H810.9800C28—H2810.9800
C8—H820.9800C28—H2820.9800
C8—H830.9800C28—H2830.9800
C9—C101.508 (4)C29—C301.514 (3)
C9—H910.9900C29—H2910.9900
C9—H920.9900C29—H2920.9900
C10—C151.386 (4)C30—C311.394 (3)
C10—C111.393 (3)C30—C351.398 (3)
C11—C121.389 (5)C31—C321.388 (3)
C11—H110.9500C31—H310.9500
C12—C131.352 (5)C32—C331.383 (3)
C12—H120.9500C32—H320.9500
C13—C141.389 (5)C33—C341.387 (4)
C13—H130.9500C33—H330.9500
C14—C151.375 (5)C34—C351.387 (3)
C14—H140.9500C34—H340.9500
C15—H150.9500C35—H350.9500
C2—O1—C6124.91 (18)C22—O21—C26126.03 (16)
C5—N4—C3128.14 (19)C25—N24—C23128.93 (18)
C5—N4—H4115 (2)C25—N24—H24115.1 (17)
C3—N4—H4117 (2)C23—N24—H24115.9 (17)
O1—C2—C3119.02 (19)O21—C22—C23120.13 (18)
O1—C2—S2117.96 (17)O21—C22—S22118.61 (15)
C3—C2—S2122.68 (16)C23—C22—S22121.26 (15)
N4—C3—C2110.90 (17)N24—C23—C22111.51 (16)
N4—C3—C7107.16 (18)N24—C23—C28108.02 (17)
C2—C3—C7111.39 (18)C22—C23—C28109.37 (18)
N4—C3—C8108.33 (18)N24—C23—C27106.60 (17)
C2—C3—C8108.7 (2)C22—C23—C27110.35 (18)
C7—C3—C8110.28 (19)C28—C23—C27110.96 (17)
N4—C5—C6118.2 (2)N24—C25—C26118.26 (18)
N4—C5—S5124.03 (18)N24—C25—S25122.55 (16)
C6—C5—S5117.72 (16)C26—C25—S25119.19 (15)
O1—C6—C5114.97 (18)O21—C26—C25114.31 (16)
O1—C6—C9107.5 (2)O21—C26—C29106.92 (17)
C5—C6—C9113.86 (19)C25—C26—C29112.68 (17)
O1—C6—H6106.6O21—C26—H26107.5
C5—C6—H6106.6C25—C26—H26107.5
C9—C6—H6106.6C29—C26—H26107.5
C3—C7—H71109.5C23—C27—H271109.5
C3—C7—H72109.5C23—C27—H272109.5
H71—C7—H72109.5H271—C27—H272109.5
C3—C7—H73109.5C23—C27—H273109.5
H71—C7—H73109.5H271—C27—H273109.5
H72—C7—H73109.5H272—C27—H273109.5
C3—C8—H81109.5C23—C28—H281109.5
C3—C8—H82109.5C23—C28—H282109.5
H81—C8—H82109.5H281—C28—H282109.5
C3—C8—H83109.5C23—C28—H283109.5
H81—C8—H83109.5H281—C28—H283109.5
H82—C8—H83109.5H282—C28—H283109.5
C10—C9—C6115.5 (2)C30—C29—C26112.80 (17)
C10—C9—H91108.4C30—C29—H291109.0
C6—C9—H91108.4C26—C29—H291109.0
C10—C9—H92108.4C30—C29—H292109.0
C6—C9—H92108.4C26—C29—H292109.0
H91—C9—H92107.5H291—C29—H292107.8
C15—C10—C11117.8 (3)C31—C30—C35118.2 (2)
C15—C10—C9122.0 (2)C31—C30—C29120.9 (2)
C11—C10—C9120.2 (3)C35—C30—C29120.8 (2)
C12—C11—C10120.3 (3)C32—C31—C30121.1 (2)
C12—C11—H11119.9C32—C31—H31119.4
C10—C11—H11119.9C30—C31—H31119.4
C13—C12—C11121.1 (3)C33—C32—C31120.0 (2)
C13—C12—H12119.5C33—C32—H32120.0
C11—C12—H12119.5C31—C32—H32120.0
C12—C13—C14119.5 (4)C32—C33—C34119.7 (2)
C12—C13—H13120.2C32—C33—H33120.2
C14—C13—H13120.2C34—C33—H33120.2
C15—C14—C13119.8 (4)C33—C34—C35120.4 (2)
C15—C14—H14120.1C33—C34—H34119.8
C13—C14—H14120.1C35—C34—H34119.8
C14—C15—C10121.5 (3)C34—C35—C30120.6 (2)
C14—C15—H15119.2C34—C35—H35119.7
C10—C15—H15119.2C30—C35—H35119.7
C6—O1—C2—C321.4 (4)C26—O21—C22—C232.9 (3)
C6—O1—C2—S2165.11 (19)C26—O21—C22—S22176.68 (16)
C5—N4—C3—C211.8 (3)C25—N24—C23—C224.9 (3)
C5—N4—C3—C7133.6 (2)C25—N24—C23—C28115.3 (2)
C5—N4—C3—C8107.4 (3)C25—N24—C23—C27125.4 (2)
O1—C2—C3—N422.2 (3)O21—C22—C23—N244.4 (3)
S2—C2—C3—N4164.59 (17)S22—C22—C23—N24176.09 (16)
O1—C2—C3—C7141.5 (2)O21—C22—C23—C28115.0 (2)
S2—C2—C3—C745.3 (3)S22—C22—C23—C2864.5 (2)
O1—C2—C3—C896.8 (3)O21—C22—C23—C27122.6 (2)
S2—C2—C3—C876.4 (2)S22—C22—C23—C2757.8 (2)
C3—N4—C5—C61.0 (4)C23—N24—C25—C261.8 (3)
C3—N4—C5—S5177.11 (19)C23—N24—C25—S25178.19 (16)
C2—O1—C6—C57.2 (4)C22—O21—C26—C259.6 (3)
C2—O1—C6—C9135.2 (2)C22—O21—C26—C29115.9 (2)
N4—C5—C6—O14.6 (3)N24—C25—C26—O218.7 (3)
S5—C5—C6—O1173.61 (17)S25—C25—C26—O21171.28 (14)
N4—C5—C6—C9120.1 (3)N24—C25—C26—C29113.6 (2)
S5—C5—C6—C961.7 (3)S25—C25—C26—C2966.4 (2)
O1—C6—C9—C1067.7 (3)O21—C26—C29—C3064.3 (2)
C5—C6—C9—C1060.9 (3)C25—C26—C29—C3062.1 (2)
C6—C9—C10—C1577.1 (3)C26—C29—C30—C3186.9 (3)
C6—C9—C10—C11105.8 (3)C26—C29—C30—C3591.7 (2)
C15—C10—C11—C120.7 (4)C35—C30—C31—C320.7 (3)
C9—C10—C11—C12176.6 (3)C29—C30—C31—C32178.0 (2)
C10—C11—C12—C130.6 (5)C30—C31—C32—C330.3 (4)
C11—C12—C13—C140.1 (5)C31—C32—C33—C340.5 (4)
C12—C13—C14—C150.4 (5)C32—C33—C34—C350.8 (4)
C13—C14—C15—C100.3 (5)C33—C34—C35—C300.4 (4)
C11—C10—C15—C140.2 (4)C31—C30—C35—C340.3 (3)
C9—C10—C15—C14177.0 (3)C29—C30—C35—C34178.3 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N4—H4···S250.89 (3)2.58 (3)3.469 (2)173 (3)
N24—H24···S50.91 (3)2.42 (3)3.293 (2)163 (2)

Experimental details

(IV)(V)(VI)
Crystal data
Chemical formulaC13H15NO3C13H15NO2SC13H15NOS2
Mr233.27249.33265.39
Crystal system, space groupTriclinic, P1Monoclinic, P21/nTriclinic, P1
Temperature (K)173173173
a, b, c (Å)5.699 (2), 10.347 (3), 11.327 (4)13.901 (4), 5.843 (6), 16.559 (5)8.6915 (13), 11.896 (3), 13.661 (4)
α, β, γ (°)67.51 (2), 80.38 (3), 80.35 (3)90, 112.70 (2), 9075.62 (2), 76.211 (16), 84.971 (18)
V3)604.5 (4)1240.7 (13)1328.2 (6)
Z244
Radiation typeMo KαMo KαMo Kα
µ (mm1)0.090.250.38
Crystal size (mm)0.50 × 0.38 × 0.120.50 × 0.20 × 0.150.48 × 0.40 × 0.30
Data collection
DiffractometerRigaku AFC-5R
diffractometer
Rigaku AFC-5R
diffractometer
Rigaku AFC-5R
diffractometer
Absorption correctionψ scan
(North et al., 1968)
ψ scan
(North et al., 1968)
Tmin, Tmax0.696, 0.9630.781, 0.891
No. of measured, independent and
observed [I > 2σ(I)] reflections
2927, 2773, 1859 3261, 2854, 1926 6399, 6101, 4424
Rint0.0250.0340.021
(sin θ/λ)max1)0.6500.6500.650
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.047, 0.130, 1.02 0.052, 0.151, 1.04 0.049, 0.142, 1.05
No. of reflections277328546101
No. of parameters160160319
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.27, 0.230.53, 0.360.54, 0.41

Computer programs: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1991), MSC/AFC Diffractometer Control Software, TEXSAN (Molecular Structure Corporation, 1999), SHELXS97 (Sheldrick, 1997), SIR92 (Altomare et al., 1994), SHELXL97 (Sheldrick, 1997), ORTEPII (Johnson, 1976), SHELXL97 and PLATON (Spek, 2001).

Selected geometric parameters (Å, º) for (IV) top
O1—C21.340 (2)O5—C51.236 (2)
O1—C61.457 (2)N4—C51.323 (2)
O2—C21.199 (2)N4—C31.460 (2)
C2—O1—C6120.53 (13)C5—N4—C3124.06 (14)
Hydrogen-bond geometry (Å, º) for (IV) top
D—H···AD—HH···AD···AD—H···A
N4—H4···O5i0.88 (2)1.95 (2)2.833 (2)176 (2)
Symmetry code: (i) x, y+1, z+1.
Selected geometric parameters (Å, º) for (V) top
S5—C51.669 (2)O2—C21.204 (3)
O1—C21.347 (3)N4—C31.470 (3)
O1—C61.455 (3)N4—C51.315 (3)
C2—O1—C6124.30 (19)C5—N4—C3128.6 (2)
Hydrogen-bond geometry (Å, º) for (V) top
D—H···AD—HH···AD···AD—H···A
N4—H4···O1i0.90 (3)2.22 (3)3.092 (4)164 (2)
Symmetry code: (i) x, y1, z.
Selected geometric parameters (Å, º) for (VI) top
S2—C21.624 (2)S22—C221.628 (2)
S5—C51.670 (2)S25—C251.685 (2)
O1—C21.331 (3)O21—C221.331 (2)
O1—C61.455 (3)O21—C261.458 (2)
N4—C51.319 (3)N24—C251.308 (3)
N4—C31.473 (3)N24—C231.476 (2)
C2—O1—C6124.91 (18)C22—O21—C26126.03 (16)
C5—N4—C3128.14 (19)C25—N24—C23128.93 (18)
Hydrogen-bond geometry (Å, º) for (VI) top
D—H···AD—HH···AD···AD—H···A
N4—H4···S250.89 (3)2.58 (3)3.469 (2)173 (3)
N24—H24···S50.91 (3)2.42 (3)3.293 (2)163 (2)
 

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