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In the title compound, [Pd(C7H12NS2)Cl(C18H15P)], the Pd atom is four-coordinate and exhibits a slightly distorted square-planar geometry.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805041784/sj6163sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536805041784/sj6163Isup2.hkl
Contains datablock I

CCDC reference: 296653

Key indicators

  • Single-crystal X-ray study
  • T = 233 K
  • Mean [sigma](C-C) = 0.004 Å
  • R factor = 0.026
  • wR factor = 0.061
  • Data-to-parameter ratio = 15.7

checkCIF/PLATON results

No syntax errors found



Alert level C PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Pd1 - S1 .. 6.68 su PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Pd1 - S2 .. 9.88 su
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 2 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion

Comment top

Palladium(II) complexes with sulfur and phosphorus donor ligands are of current interest due to their ability to sequester the metal ion (Faraglia et al., 2005), their antitumor activity against leukaemic cells (Mital et al., 1989; Tiekink, 2002), and their use as pesticides (Fackler, 2002) and antimicrobial agents (Ronconi et al., 2005), while palladium(II)–phosphine complexes are also important from a catalytic point of view (Crawforth et al., 2005; Tsuji, 1995), e.g. [Pd(PPh3)2(CN)2] (Hua et al., 2001), [Pd(PPh3)2Cl2] (Nicholas, 1987).

In the title compound, (I), the dithiocarbamate ligand acts as a bidentate chelate, coordinating to Pd via both S atoms. Atom S2 is trans to the chloride anion and atom S1 trans to the triphenylphosphine ligand (Fig. 1 and Table 1). The coordination geometry about the Pd atom is distorted square planar and the deviation of the Pd1 atom from the mean plane through the ligand donor atoms is only 0.0103 (4) Å.

Experimental top

4-Methylpiperidine-1-dithiocarbamic acid (Vogel, 1968) dissolved (0.2 g, 1.14 mmol) in CH2Cl2 (10 ml) was added to a suspension of [PdCl2(PPh3)] (0.5 g, 1.14 mmol) (Kitano et al., 1983) in CH2Cl2 (20 ml). The resulting solution was refluxed for 1 h. Yellow crystals were obtained on slow evaporation of the solvent at room temperature.

Refinement top

H atoms were positioned geometrically (C—H = 0.94–0.98 Å) and refined as riding, with Uiso(H) = 1.2 or 1.5 times Ueq(C).

Computing details top

Data collection: COLLECT (Nonius, 1998); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a); molecular graphics: SHELXTL (Sheldrick, 1997b); software used to prepare material for publication: SHELXL97.

Figures top
[Figure 1] Fig. 1. The structure of (I), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
Chloro(4-methyl piperidine-1-dithiocarbamato-κ2S:S')(triphenylphosphine-κP)palladium(II) top
Crystal data top
[Pd(C7H12NS2)Cl(C18H15P)]F(000) = 1176
Mr = 578.42Dx = 1.530 Mg m3
Monoclinic, P21/nMelting point: 511 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 10.1668 (3) ÅCell parameters from 13105 reflections
b = 13.8325 (4) Åθ = 1.0–26.0°
c = 17.8608 (4) ŵ = 1.09 mm1
β = 90.162 (2)°T = 233 K
V = 2511.79 (12) Å3Prism, yellow
Z = 40.2 × 0.12 × 0.1 mm
Data collection top
Nonius KappaCCD
diffractometer
3853 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.025
Graphite monochromatorθmax = 25.0°, θmin = 1.9°
ϕ and ω scansh = 1212
13105 measured reflectionsk = 1616
4405 independent reflectionsl = 2121
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.061H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0201P)2 + 2.004P]
where P = (Fo2 + 2Fc2)/3
4405 reflections(Δ/σ)max = 0.002
280 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = 0.55 e Å3
Crystal data top
[Pd(C7H12NS2)Cl(C18H15P)]V = 2511.79 (12) Å3
Mr = 578.42Z = 4
Monoclinic, P21/nMo Kα radiation
a = 10.1668 (3) ŵ = 1.09 mm1
b = 13.8325 (4) ÅT = 233 K
c = 17.8608 (4) Å0.2 × 0.12 × 0.1 mm
β = 90.162 (2)°
Data collection top
Nonius KappaCCD
diffractometer
3853 reflections with I > 2σ(I)
13105 measured reflectionsRint = 0.025
4405 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0260 restraints
wR(F2) = 0.061H-atom parameters constrained
S = 1.05Δρmax = 0.39 e Å3
4405 reflectionsΔρmin = 0.55 e Å3
280 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.1669 (2)0.94259 (16)1.08327 (12)0.0402 (5)
P10.24523 (6)0.66612 (4)0.96739 (3)0.03149 (15)
Cl10.08028 (8)0.76177 (6)0.82152 (4)0.0596 (2)
Pd10.078103 (18)0.776406 (13)0.951333 (10)0.03322 (7)
S10.08623 (6)0.89326 (5)0.94475 (4)0.03767 (15)
S20.03484 (7)0.81516 (5)1.07391 (4)0.04116 (16)
C10.0866 (2)0.89244 (18)1.04094 (14)0.0367 (6)
C20.2678 (3)1.0079 (2)1.05191 (15)0.0452 (7)
H2A0.26911.00210.99720.054*
H2B0.24611.07491.06470.054*
C30.4008 (3)0.9827 (2)1.08267 (15)0.0479 (7)
H3A0.42800.91991.06250.057*
H3B0.46461.03111.06570.057*
C40.4035 (3)0.9781 (2)1.16736 (16)0.0505 (7)
H40.38581.04421.18610.061*
C50.2944 (3)0.9140 (2)1.19580 (15)0.0511 (7)
H5A0.29170.91761.25060.061*
H5B0.31380.84691.18200.061*
C60.1617 (3)0.9410 (2)1.16547 (15)0.0458 (7)
H6A0.13611.00491.18430.055*
H6B0.09580.89401.18220.055*
C70.5388 (3)0.9489 (3)1.19575 (19)0.0666 (9)
H7A0.60450.99271.17560.100*
H7B0.53980.95211.25000.100*
H7C0.55820.88351.17970.100*
C80.2215 (2)0.55279 (17)0.91732 (13)0.0315 (5)
C90.0952 (2)0.51680 (19)0.90778 (15)0.0391 (6)
H90.02280.55240.92540.047*
C100.0750 (3)0.4293 (2)0.87268 (16)0.0478 (7)
H100.01070.40470.86730.057*
C110.1808 (3)0.37767 (19)0.84539 (16)0.0462 (7)
H110.16670.31830.82100.055*
C120.3060 (3)0.41264 (19)0.85367 (15)0.0428 (6)
H120.37770.37740.83480.051*
C130.3270 (2)0.49979 (19)0.88982 (14)0.0373 (6)
H130.41320.52330.89580.045*
C140.2766 (2)0.62920 (18)1.06358 (13)0.0335 (5)
C150.3009 (3)0.7012 (2)1.11688 (14)0.0406 (6)
H150.29930.76651.10250.049*
C160.3272 (3)0.6771 (2)1.19037 (15)0.0484 (7)
H160.34450.72601.22560.058*
C170.3281 (3)0.5820 (3)1.21221 (15)0.0539 (8)
H170.34590.56591.26230.065*
C180.3031 (3)0.5104 (2)1.16079 (16)0.0519 (7)
H180.30280.44541.17610.062*
C190.2780 (3)0.5334 (2)1.08619 (14)0.0407 (6)
H190.26210.48401.05120.049*
C200.4055 (2)0.70710 (17)0.93396 (14)0.0351 (6)
C210.5183 (3)0.7021 (2)0.97746 (15)0.0442 (7)
H210.51300.68051.02730.053*
C220.6390 (3)0.7286 (2)0.94794 (17)0.0533 (8)
H220.71510.72550.97790.064*
C230.6476 (3)0.7593 (2)0.87488 (17)0.0537 (8)
H230.72950.77710.85490.064*
C240.5365 (3)0.7640 (2)0.83131 (16)0.0546 (8)
H240.54280.78420.78120.066*
C250.4161 (3)0.7392 (2)0.86036 (15)0.0466 (7)
H250.34030.74400.83030.056*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0407 (12)0.0423 (12)0.0378 (12)0.0043 (10)0.0047 (10)0.0054 (10)
P10.0330 (3)0.0317 (3)0.0297 (3)0.0008 (3)0.0023 (3)0.0017 (3)
Cl10.0693 (5)0.0744 (5)0.0349 (4)0.0232 (4)0.0144 (3)0.0113 (3)
Pd10.03550 (12)0.03133 (11)0.03280 (12)0.00051 (8)0.00382 (8)0.00268 (8)
S10.0372 (4)0.0387 (3)0.0370 (3)0.0021 (3)0.0027 (3)0.0012 (3)
S20.0460 (4)0.0416 (4)0.0359 (3)0.0074 (3)0.0018 (3)0.0038 (3)
C10.0372 (14)0.0322 (13)0.0406 (14)0.0054 (11)0.0006 (12)0.0036 (11)
C20.0475 (16)0.0433 (15)0.0448 (15)0.0112 (13)0.0064 (13)0.0094 (12)
C30.0459 (16)0.0550 (17)0.0428 (16)0.0080 (13)0.0013 (13)0.0026 (13)
C40.0477 (17)0.0546 (18)0.0492 (17)0.0007 (14)0.0076 (14)0.0003 (14)
C50.0617 (19)0.0533 (17)0.0383 (15)0.0028 (14)0.0060 (14)0.0061 (13)
C60.0487 (17)0.0528 (17)0.0360 (14)0.0086 (13)0.0023 (12)0.0011 (12)
C70.0543 (19)0.083 (2)0.062 (2)0.0053 (18)0.0144 (16)0.0049 (18)
C80.0332 (13)0.0324 (13)0.0289 (12)0.0005 (10)0.0008 (10)0.0003 (10)
C90.0336 (14)0.0392 (14)0.0445 (15)0.0007 (11)0.0059 (11)0.0025 (12)
C100.0408 (16)0.0413 (15)0.0614 (18)0.0110 (13)0.0003 (14)0.0064 (13)
C110.0541 (18)0.0350 (14)0.0496 (16)0.0040 (13)0.0023 (13)0.0101 (12)
C120.0439 (16)0.0410 (15)0.0436 (15)0.0083 (12)0.0040 (12)0.0061 (12)
C130.0304 (13)0.0422 (14)0.0392 (14)0.0002 (11)0.0009 (11)0.0014 (11)
C140.0268 (12)0.0431 (14)0.0307 (13)0.0009 (11)0.0005 (10)0.0010 (11)
C150.0395 (15)0.0474 (16)0.0348 (14)0.0007 (12)0.0016 (12)0.0030 (11)
C160.0413 (16)0.068 (2)0.0357 (15)0.0037 (14)0.0001 (12)0.0080 (14)
C170.0470 (17)0.084 (2)0.0302 (15)0.0038 (16)0.0000 (12)0.0063 (15)
C180.0511 (18)0.0580 (18)0.0465 (17)0.0061 (14)0.0051 (14)0.0168 (14)
C190.0380 (15)0.0467 (16)0.0374 (14)0.0019 (12)0.0020 (12)0.0020 (12)
C200.0387 (14)0.0296 (13)0.0371 (14)0.0049 (11)0.0013 (11)0.0010 (10)
C210.0427 (16)0.0508 (16)0.0393 (15)0.0112 (13)0.0015 (12)0.0019 (12)
C220.0376 (16)0.070 (2)0.0527 (18)0.0169 (14)0.0039 (13)0.0014 (15)
C230.0496 (18)0.0606 (19)0.0511 (18)0.0217 (15)0.0102 (15)0.0001 (14)
C240.0594 (19)0.0621 (19)0.0423 (16)0.0139 (16)0.0049 (15)0.0088 (14)
C250.0454 (16)0.0550 (17)0.0395 (15)0.0070 (13)0.0035 (13)0.0072 (13)
Geometric parameters (Å, º) top
N1—C61.469 (3)C9—C101.378 (4)
N1—C21.475 (3)C9—H90.9400
P1—C141.820 (2)C10—C111.380 (4)
P1—C81.820 (2)C10—H100.9400
P1—C201.827 (3)C11—C121.370 (4)
Pd1—P12.3009 (7)C11—H110.9400
Pd1—Cl12.3276 (7)C12—C131.384 (4)
Pd1—S12.3274 (7)C12—H120.9400
Pd1—S22.2977 (7)C13—H130.9400
S1—C11.718 (3)C14—C191.385 (4)
S2—C11.735 (3)C14—C151.399 (4)
N1—C11.313 (3)C15—C161.380 (4)
C2—C31.502 (4)C15—H150.9400
C2—H2A0.9800C16—C171.371 (4)
C2—H2B0.9800C16—H160.9400
C3—C41.514 (4)C17—C181.374 (4)
C3—H3A0.9800C17—H170.9400
C3—H3B0.9800C18—C191.393 (4)
C4—C51.507 (4)C18—H180.9400
C4—C71.521 (4)C19—H190.9400
C4—H40.9900C20—C211.385 (4)
C5—C61.503 (4)C20—C251.392 (4)
C5—H5A0.9800C21—C221.387 (4)
C5—H5B0.9800C21—H210.9400
C6—H6A0.9800C22—C231.375 (4)
C6—H6B0.9800C22—H220.9400
C7—H7A0.9700C23—C241.371 (4)
C7—H7B0.9700C23—H230.9400
C7—H7C0.9700C24—C251.375 (4)
C8—C91.388 (3)C24—H240.9400
C8—C131.390 (3)C25—H250.9400
C1—N1—C6123.2 (2)H7B—C7—H7C109.5
C1—N1—C2122.5 (2)C9—C8—C13118.8 (2)
C6—N1—C2114.3 (2)C9—C8—P1119.36 (18)
C14—P1—C8104.17 (11)C13—C8—P1121.78 (18)
C14—P1—C20103.97 (11)C10—C9—C8120.5 (2)
C8—P1—C20102.92 (11)C10—C9—H9119.8
C14—P1—Pd1115.54 (8)C8—C9—H9119.8
C8—P1—Pd1114.40 (8)C9—C10—C11120.0 (2)
C20—P1—Pd1114.36 (8)C9—C10—H10120.0
S2—Pd1—P1100.32 (2)C11—C10—H10120.0
S2—Pd1—S175.33 (2)C12—C11—C10120.3 (2)
P1—Pd1—S1175.24 (2)C12—C11—H11119.9
S2—Pd1—Cl1166.37 (3)C10—C11—H11119.9
P1—Pd1—Cl193.29 (2)C11—C12—C13120.0 (2)
S1—Pd1—Cl191.08 (3)C11—C12—H12120.0
C1—S1—Pd187.06 (9)C13—C12—H12120.0
C1—S2—Pd187.61 (9)C12—C13—C8120.4 (2)
N1—C1—S1125.1 (2)C12—C13—H13119.8
N1—C1—S2124.99 (19)C8—C13—H13119.8
S1—C1—S2109.86 (14)C19—C14—C15118.7 (2)
N1—C2—C3110.2 (2)C19—C14—P1123.04 (19)
N1—C2—H2A109.6C15—C14—P1118.23 (19)
C3—C2—H2A109.6C16—C15—C14120.6 (3)
N1—C2—H2B109.6C16—C15—H15119.7
C3—C2—H2B109.6C14—C15—H15119.7
H2A—C2—H2B108.1C17—C16—C15120.2 (3)
C2—C3—C4113.2 (2)C17—C16—H16119.9
C2—C3—H3A108.9C15—C16—H16119.9
C4—C3—H3A108.9C16—C17—C18120.0 (3)
C2—C3—H3B108.9C16—C17—H17120.0
C4—C3—H3B108.9C18—C17—H17120.0
H3A—C3—H3B107.7C17—C18—C19120.5 (3)
C5—C4—C3110.2 (2)C17—C18—H18119.7
C5—C4—C7113.4 (3)C19—C18—H18119.7
C3—C4—C7111.3 (3)C14—C19—C18119.9 (3)
C5—C4—H4107.2C14—C19—H19120.0
C3—C4—H4107.2C18—C19—H19120.0
C7—C4—H4107.2C21—C20—C25118.7 (2)
C6—C5—C4113.1 (2)C21—C20—P1122.60 (19)
C6—C5—H5A109.0C25—C20—P1118.59 (19)
C4—C5—H5A109.0C20—C21—C22120.4 (3)
C6—C5—H5B109.0C20—C21—H21119.8
C4—C5—H5B109.0C22—C21—H21119.8
H5A—C5—H5B107.8C23—C22—C21120.1 (3)
N1—C6—C5109.5 (2)C23—C22—H22120.0
N1—C6—H6A109.8C21—C22—H22120.0
C5—C6—H6A109.8C24—C23—C22119.9 (3)
N1—C6—H6B109.8C24—C23—H23120.1
C5—C6—H6B109.8C22—C23—H23120.1
H6A—C6—H6B108.2C23—C24—C25120.5 (3)
C4—C7—H7A109.5C23—C24—H24119.8
C4—C7—H7B109.5C25—C24—H24119.8
H7A—C7—H7B109.5C24—C25—C20120.5 (3)
C4—C7—H7C109.5C24—C25—H25119.8
H7A—C7—H7C109.5C20—C25—H25119.8

Experimental details

Crystal data
Chemical formula[Pd(C7H12NS2)Cl(C18H15P)]
Mr578.42
Crystal system, space groupMonoclinic, P21/n
Temperature (K)233
a, b, c (Å)10.1668 (3), 13.8325 (4), 17.8608 (4)
β (°) 90.162 (2)
V3)2511.79 (12)
Z4
Radiation typeMo Kα
µ (mm1)1.09
Crystal size (mm)0.2 × 0.12 × 0.1
Data collection
DiffractometerNonius KappaCCD
diffractometer
Absorption correction
No. of measured, independent and
observed [I > 2σ(I)] reflections
13105, 4405, 3853
Rint0.025
(sin θ/λ)max1)0.595
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.026, 0.061, 1.05
No. of reflections4405
No. of parameters280
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.39, 0.55

Computer programs: COLLECT (Nonius, 1998), SCALEPACK (Otwinowski & Minor, 1997), DENZO (Otwinowski & Minor, 1997) and SCALEPACK, SHELXS97 (Sheldrick, 1997a), SHELXL97 (Sheldrick, 1997a), SHELXTL (Sheldrick, 1997b), SHELXL97.

Selected geometric parameters (Å, º) top
Pd1—P12.3009 (7)S1—C11.718 (3)
Pd1—Cl12.3276 (7)S2—C11.735 (3)
Pd1—S12.3274 (7)N1—C11.313 (3)
Pd1—S22.2977 (7)
S2—Pd1—P1100.32 (2)C1—S1—Pd187.06 (9)
S2—Pd1—S175.33 (2)C1—S2—Pd187.61 (9)
P1—Pd1—S1175.24 (2)N1—C1—S1125.1 (2)
S2—Pd1—Cl1166.37 (3)N1—C1—S2124.99 (19)
P1—Pd1—Cl193.29 (2)S1—C1—S2109.86 (14)
S1—Pd1—Cl191.08 (3)
 

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