Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270106037930/sf3017sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270106037930/sf3017Isup2.hkl |
CCDC reference: 628517
Compounds (I) and (II) were prepared according to our previously reported method (Çetin, 2004; Koparır, Cansız & Çetin, 2005). Triazole (I) (2 mmol, 0.536 g) was dissolved in a solution of KOH (2 mmol, 0.112 g) in methanol (15 ml) at 313 K. 2-Chloro-N-cyclohexylacetamide, (II) (0.002 mmol, 0.365 g), was added to the solution obtained and the mixture was refluxed for 2 h. After cooling, the precipitated product, (III), was filtered off and recrystallized from ethanol (yield 65%; m.p. 450–451 K). Spectroscopic anlaysis: IR (ν, cm−1): 3446–3340 (s, N—H, O—H), 3160–3020 (b, Ar C—H), 2980–2930 (b, Alk C—H), 1680 (s, C═O), 1618 (m, C═N); 1H NMR (400 MHz, DMSO-d6, δ, p.p.m.): 1.25–1.89 (m, 10H, cyclohexyl CH2), 2.47 (s, 3H, CH3), 3.71–3.73 (m, 1H, cyclohexyl N—CH), 7.11–7.61 (m, 7H, Ar CH, NH), 7.78–7.80 (d, 2H, J = 6.23 Hz, pyridine N—CH).
The coordinates of the H atoms of the water molecules were determined from a difference map and were then allowed to refine isotropically, while the coordinates of atom H12W were refined isotropically subject to a DFIX restraint Of what?. All other H atoms were positioned geometrically and refined with a riding model, fixing the bond lengths at 0.98, 0.97, 0.96, 0.93 and 0.86 Å for CH, CH2, CH3, aromatic CH and NH groups, respectively. The displacement parameters of the H atoms were constrained to Uiso(H) = 1.2Ueq(parent), or 1.5Ueq(C) for methyl H atoms. Riding methyl H atoms were allowed to rotate freely during refinement using the AFIX 137 command of SHELXL97 (Sheldrick, 1997). Examination of the refined structure using PLATON (Spek, 2003) revealed the presence of void spaces having a total volume of 20.9 Å3 (0.9%) per unit cell.
Data collection: X-AREA (Stoe & Cie, 2002); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2003).
C22H25N5OS·2H2O | F(000) = 944 |
Mr = 443.56 | Dx = 1.248 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 26172 reflections |
a = 12.3634 (10) Å | θ = 1.5–25.0° |
b = 6.8031 (4) Å | µ = 0.17 mm−1 |
c = 28.077 (2) Å | T = 296 K |
β = 90.306 (7)° | Prism, colourless |
V = 2361.5 (3) Å3 | 0.68 × 0.43 × 0.15 mm |
Z = 4 |
Stoe IPDS II diffractometer | 4135 independent reflections |
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | 2947 reflections with I > 2σ(I) |
Plane graphite monochromator | Rint = 0.048 |
Detector resolution: 6.67 pixels mm-1 | θmax = 25.0°, θmin = 1.5° |
ω scans | h = −14→14 |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | k = −7→8 |
Tmin = 0.921, Tmax = 0.979 | l = −33→33 |
26676 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.038 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.107 | w = 1/[σ2(Fo2) + (0.0634P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.001 |
4135 reflections | Δρmax = 0.17 e Å−3 |
298 parameters | Δρmin = −0.17 e Å−3 |
1 restraint | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0066 (10) |
C22H25N5OS·2H2O | V = 2361.5 (3) Å3 |
Mr = 443.56 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.3634 (10) Å | µ = 0.17 mm−1 |
b = 6.8031 (4) Å | T = 296 K |
c = 28.077 (2) Å | 0.68 × 0.43 × 0.15 mm |
β = 90.306 (7)° |
Stoe IPDS II diffractometer | 4135 independent reflections |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | 2947 reflections with I > 2σ(I) |
Tmin = 0.921, Tmax = 0.979 | Rint = 0.048 |
26676 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 1 restraint |
wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.17 e Å−3 |
4135 reflections | Δρmin = −0.17 e Å−3 |
298 parameters |
Experimental. Melting points were determined in open capillary tubes on a digital Gallenkamp melting-point apparatus and are uncorrected. The IR spectra were recorded for KBr disks with a Mattson 1000 F T–IR spectrometer. 1H NMR spectra were recorded on a Varian Mercury Plus 400 MHz 1H NMR spectrometer in DMSO-d6 with TMS as an internal standard. Starting materials were obtained from Fluka or Aldrich. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S3 | 0.23210 (5) | 0.54135 (9) | 0.550646 (18) | 0.0722 (2) | |
O1W | 0.3081 (2) | −0.0792 (3) | 0.64499 (8) | 0.0966 (6) | |
H11W | 0.343 (3) | −0.064 (5) | 0.6184 (12) | 0.119 (11)* | |
H12W | 0.260 (3) | −0.165 (6) | 0.6411 (17) | 0.20 (2)* | |
O2W | 0.56974 (18) | 0.0079 (3) | 0.43530 (7) | 0.1030 (7) | |
H21W | 0.533 (3) | 0.095 (6) | 0.4479 (12) | 0.143 (13)* | |
H22W | 0.571 (2) | −0.095 (5) | 0.4527 (10) | 0.106 (9)* | |
O3 | 0.16757 (14) | 0.5786 (2) | 0.64496 (5) | 0.0826 (5) | |
N1 | 0.43480 (13) | 0.3257 (2) | 0.45999 (5) | 0.0593 (4) | |
N2 | 0.38925 (13) | 0.3274 (2) | 0.50506 (5) | 0.0598 (4) | |
N3 | 0.21820 (13) | 0.2839 (2) | 0.67360 (5) | 0.0598 (4) | |
H3 | 0.2510 | 0.1756 | 0.6672 | 0.072* | |
N4 | 0.31391 (11) | 0.5604 (2) | 0.46182 (5) | 0.0503 (4) | |
N5 | 0.48340 (16) | 0.5811 (3) | 0.29153 (7) | 0.0850 (6) | |
C3 | 0.31735 (15) | 0.4685 (3) | 0.50519 (6) | 0.0536 (4) | |
C5 | 0.38915 (14) | 0.4644 (3) | 0.43469 (6) | 0.0500 (4) | |
C31 | 0.27660 (16) | 0.3733 (3) | 0.59562 (6) | 0.0622 (5) | |
H31A | 0.2619 | 0.2391 | 0.5858 | 0.075* | |
H31B | 0.3538 | 0.3871 | 0.6010 | 0.075* | |
C32 | 0.21543 (15) | 0.4212 (3) | 0.64068 (7) | 0.0578 (5) | |
C33 | 0.16869 (16) | 0.3053 (3) | 0.72039 (6) | 0.0582 (5) | |
H33 | 0.0953 | 0.3567 | 0.7158 | 0.070* | |
C34 | 0.1600 (2) | 0.1054 (4) | 0.74345 (8) | 0.0859 (7) | |
H34A | 0.2315 | 0.0485 | 0.7468 | 0.103* | |
H34B | 0.1172 | 0.0192 | 0.7233 | 0.103* | |
C35 | 0.1071 (3) | 0.1219 (4) | 0.79251 (9) | 0.1012 (9) | |
H35A | 0.0332 | 0.1677 | 0.7889 | 0.121* | |
H35B | 0.1053 | −0.0065 | 0.8075 | 0.121* | |
C36 | 0.1691 (2) | 0.2624 (5) | 0.82340 (9) | 0.1010 (9) | |
H36A | 0.2413 | 0.2112 | 0.8290 | 0.121* | |
H36B | 0.1335 | 0.2741 | 0.8540 | 0.121* | |
C37 | 0.1770 (3) | 0.4637 (5) | 0.80047 (9) | 0.0998 (9) | |
H37A | 0.2196 | 0.5502 | 0.8206 | 0.120* | |
H37B | 0.1052 | 0.5198 | 0.7971 | 0.120* | |
C38 | 0.2299 (2) | 0.4475 (4) | 0.75134 (8) | 0.0863 (7) | |
H38A | 0.2309 | 0.5757 | 0.7363 | 0.104* | |
H38B | 0.3040 | 0.4032 | 0.7550 | 0.104* | |
C41 | 0.23171 (14) | 0.7009 (3) | 0.44848 (6) | 0.0488 (4) | |
C42 | 0.23571 (17) | 0.8886 (3) | 0.46582 (8) | 0.0664 (5) | |
H42 | 0.2946 | 0.9311 | 0.4838 | 0.080* | |
C43 | 0.1500 (2) | 1.0144 (3) | 0.45603 (9) | 0.0781 (6) | |
H43 | 0.1521 | 1.1421 | 0.4678 | 0.094* | |
C44 | 0.06237 (17) | 0.9557 (4) | 0.42949 (8) | 0.0755 (7) | |
C45 | 0.06281 (18) | 0.7683 (4) | 0.41153 (9) | 0.0842 (7) | |
H45 | 0.0056 | 0.7274 | 0.3923 | 0.101* | |
C46 | 0.14583 (17) | 0.6392 (3) | 0.42120 (8) | 0.0692 (5) | |
H46 | 0.1437 | 0.5116 | 0.4094 | 0.083* | |
C47 | −0.0318 (2) | 1.0943 (5) | 0.42092 (12) | 0.1224 (12) | |
H47A | −0.0267 | 1.2036 | 0.4425 | 0.184* | |
H47B | −0.0985 | 1.0257 | 0.4262 | 0.184* | |
H47C | −0.0298 | 1.1413 | 0.3887 | 0.184* | |
C51 | 0.41822 (14) | 0.5090 (3) | 0.38515 (6) | 0.0523 (4) | |
C52 | 0.41153 (17) | 0.6946 (3) | 0.36565 (8) | 0.0697 (6) | |
H52 | 0.3849 | 0.7992 | 0.3834 | 0.084* | |
C53 | 0.4450 (2) | 0.7223 (4) | 0.31934 (9) | 0.0837 (7) | |
H53 | 0.4404 | 0.8485 | 0.3068 | 0.100* | |
C54 | 0.49046 (18) | 0.4045 (4) | 0.31104 (8) | 0.0777 (6) | |
H54 | 0.5182 | 0.3030 | 0.2926 | 0.093* | |
C55 | 0.45952 (16) | 0.3614 (3) | 0.35676 (7) | 0.0638 (5) | |
H55 | 0.4663 | 0.2341 | 0.3685 | 0.077* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S3 | 0.0900 (4) | 0.0747 (4) | 0.0521 (3) | 0.0413 (3) | 0.0181 (2) | 0.0127 (2) |
O1W | 0.1272 (17) | 0.0709 (12) | 0.0921 (13) | 0.0259 (12) | 0.0321 (12) | −0.0005 (10) |
O2W | 0.1429 (17) | 0.0830 (12) | 0.0836 (12) | 0.0603 (12) | 0.0421 (11) | 0.0241 (10) |
O3 | 0.1085 (11) | 0.0711 (10) | 0.0685 (9) | 0.0399 (9) | 0.0309 (8) | 0.0157 (8) |
N1 | 0.0678 (9) | 0.0585 (9) | 0.0519 (9) | 0.0213 (8) | 0.0113 (7) | 0.0051 (7) |
N2 | 0.0722 (10) | 0.0570 (10) | 0.0502 (9) | 0.0227 (8) | 0.0097 (7) | 0.0074 (7) |
N3 | 0.0764 (10) | 0.0551 (9) | 0.0479 (9) | 0.0157 (8) | 0.0086 (7) | 0.0041 (7) |
N4 | 0.0579 (8) | 0.0476 (8) | 0.0454 (8) | 0.0159 (7) | 0.0038 (6) | 0.0038 (7) |
N5 | 0.0883 (13) | 0.1053 (16) | 0.0614 (11) | 0.0187 (11) | 0.0202 (9) | 0.0151 (11) |
C3 | 0.0639 (11) | 0.0504 (10) | 0.0466 (10) | 0.0163 (9) | 0.0047 (8) | 0.0049 (8) |
C5 | 0.0526 (9) | 0.0484 (10) | 0.0490 (9) | 0.0119 (8) | 0.0042 (7) | −0.0005 (8) |
C31 | 0.0699 (12) | 0.0645 (12) | 0.0522 (11) | 0.0218 (10) | 0.0097 (9) | 0.0070 (9) |
C32 | 0.0638 (11) | 0.0576 (12) | 0.0520 (10) | 0.0146 (9) | 0.0073 (8) | 0.0032 (9) |
C33 | 0.0631 (11) | 0.0642 (12) | 0.0474 (10) | 0.0086 (9) | 0.0072 (8) | 0.0038 (9) |
C34 | 0.1135 (19) | 0.0751 (15) | 0.0691 (14) | −0.0035 (14) | 0.0177 (13) | 0.0096 (12) |
C35 | 0.125 (2) | 0.1004 (19) | 0.0788 (17) | −0.0112 (17) | 0.0302 (16) | 0.0179 (15) |
C36 | 0.1034 (19) | 0.143 (3) | 0.0563 (14) | 0.0077 (18) | 0.0104 (13) | 0.0158 (16) |
C37 | 0.115 (2) | 0.120 (2) | 0.0649 (14) | −0.0232 (17) | 0.0205 (14) | −0.0215 (15) |
C38 | 0.1011 (17) | 0.0981 (18) | 0.0600 (13) | −0.0266 (14) | 0.0177 (12) | −0.0114 (12) |
C41 | 0.0530 (10) | 0.0505 (10) | 0.0429 (9) | 0.0134 (8) | 0.0040 (8) | 0.0048 (8) |
C42 | 0.0733 (13) | 0.0554 (12) | 0.0704 (13) | 0.0155 (10) | −0.0095 (10) | −0.0003 (10) |
C43 | 0.0992 (17) | 0.0546 (12) | 0.0807 (15) | 0.0277 (12) | 0.0066 (13) | 0.0058 (11) |
C44 | 0.0624 (13) | 0.0886 (17) | 0.0757 (14) | 0.0314 (12) | 0.0153 (11) | 0.0305 (13) |
C45 | 0.0599 (12) | 0.104 (2) | 0.0889 (17) | 0.0109 (13) | −0.0148 (11) | 0.0166 (15) |
C46 | 0.0705 (13) | 0.0678 (13) | 0.0692 (13) | 0.0084 (11) | −0.0077 (10) | −0.0029 (11) |
C47 | 0.0813 (16) | 0.138 (3) | 0.148 (3) | 0.0593 (18) | 0.0254 (17) | 0.062 (2) |
C51 | 0.0468 (9) | 0.0608 (11) | 0.0494 (10) | 0.0080 (8) | 0.0035 (7) | 0.0036 (8) |
C52 | 0.0781 (13) | 0.0647 (13) | 0.0665 (13) | 0.0145 (10) | 0.0161 (10) | 0.0100 (11) |
C53 | 0.0938 (16) | 0.0847 (16) | 0.0728 (15) | 0.0173 (13) | 0.0200 (12) | 0.0276 (13) |
C54 | 0.0854 (15) | 0.0906 (17) | 0.0572 (12) | 0.0189 (12) | 0.0160 (11) | −0.0012 (12) |
C55 | 0.0720 (12) | 0.0647 (12) | 0.0549 (11) | 0.0142 (10) | 0.0090 (9) | 0.0000 (10) |
S3—C3 | 1.7319 (18) | C36—C37 | 1.517 (4) |
S3—C31 | 1.7880 (19) | C36—H36A | 0.9700 |
O1W—H11W | 0.87 (3) | C36—H36B | 0.9700 |
O1W—H12W | 0.84 (2) | C37—C38 | 1.534 (3) |
O2W—H21W | 0.83 (4) | C37—H37A | 0.9700 |
O2W—H22W | 0.86 (3) | C37—H37B | 0.9700 |
O3—C32 | 1.230 (2) | C38—H38A | 0.9700 |
N1—C5 | 1.308 (2) | C38—H38B | 0.9700 |
N1—N2 | 1.388 (2) | C41—C42 | 1.368 (3) |
N2—C3 | 1.308 (2) | C41—C46 | 1.372 (3) |
N3—C32 | 1.314 (2) | C42—C43 | 1.389 (3) |
N3—C33 | 1.460 (2) | C42—H42 | 0.9300 |
N3—H3 | 0.8600 | C43—C44 | 1.371 (4) |
N4—C3 | 1.369 (2) | C43—H43 | 0.9300 |
N4—C5 | 1.371 (2) | C44—C45 | 1.371 (4) |
N4—C41 | 1.443 (2) | C44—C47 | 1.516 (3) |
N5—C54 | 1.323 (3) | C45—C46 | 1.377 (3) |
N5—C53 | 1.328 (3) | C45—H45 | 0.9300 |
C5—C51 | 1.470 (2) | C46—H46 | 0.9300 |
C31—C32 | 1.513 (2) | C47—H47A | 0.9600 |
C31—H31A | 0.9700 | C47—H47B | 0.9600 |
C31—H31B | 0.9700 | C47—H47C | 0.9600 |
C33—C38 | 1.502 (3) | C51—C52 | 1.378 (3) |
C33—C34 | 1.510 (3) | C51—C55 | 1.382 (3) |
C33—H33 | 0.9800 | C52—C53 | 1.380 (3) |
C34—C35 | 1.532 (3) | C52—H52 | 0.9300 |
C34—H34A | 0.9700 | C53—H53 | 0.9300 |
C34—H34B | 0.9700 | C54—C55 | 1.373 (3) |
C35—C36 | 1.499 (4) | C54—H54 | 0.9300 |
C35—H35A | 0.9700 | C55—H55 | 0.9300 |
C35—H35B | 0.9700 | ||
C3—S3—C31 | 98.69 (8) | C36—C37—C38 | 110.2 (2) |
H11W—O1W—H12W | 109 (4) | C36—C37—H37A | 109.6 |
H21W—O2W—H22W | 111 (3) | C38—C37—H37A | 109.6 |
C5—N1—N2 | 108.27 (13) | C36—C37—H37B | 109.6 |
C3—N2—N1 | 106.72 (14) | C38—C37—H37B | 109.6 |
C32—N3—C33 | 123.56 (16) | H37A—C37—H37B | 108.1 |
C32—N3—H3 | 118.2 | C33—C38—C37 | 110.54 (19) |
C33—N3—H3 | 118.2 | C33—C38—H38A | 109.5 |
C3—N4—C5 | 104.98 (14) | C37—C38—H38A | 109.5 |
C3—N4—C41 | 123.50 (14) | C33—C38—H38B | 109.5 |
C5—N4—C41 | 130.55 (14) | C37—C38—H38B | 109.5 |
C54—N5—C53 | 115.89 (19) | H38A—C38—H38B | 108.1 |
N2—C3—N4 | 110.52 (15) | C42—C41—C46 | 120.73 (17) |
N2—C3—S3 | 128.92 (14) | C42—C41—N4 | 120.11 (16) |
N4—C3—S3 | 120.55 (12) | C46—C41—N4 | 118.98 (16) |
N1—C5—N4 | 109.51 (15) | C41—C42—C43 | 118.6 (2) |
N1—C5—C51 | 123.79 (15) | C41—C42—H42 | 120.7 |
N4—C5—C51 | 126.68 (15) | C43—C42—H42 | 120.7 |
C32—C31—S3 | 107.43 (13) | C44—C43—C42 | 121.9 (2) |
C32—C31—H31A | 110.2 | C44—C43—H43 | 119.1 |
S3—C31—H31A | 110.2 | C42—C43—H43 | 119.1 |
C32—C31—H31B | 110.2 | C43—C44—C45 | 117.78 (19) |
S3—C31—H31B | 110.2 | C43—C44—C47 | 120.6 (3) |
H31A—C31—H31B | 108.5 | C45—C44—C47 | 121.6 (3) |
O3—C32—N3 | 124.11 (17) | C44—C45—C46 | 121.7 (2) |
O3—C32—C31 | 120.80 (17) | C44—C45—H45 | 119.2 |
N3—C32—C31 | 115.09 (16) | C46—C45—H45 | 119.2 |
N3—C33—C38 | 111.88 (16) | C41—C46—C45 | 119.3 (2) |
N3—C33—C34 | 109.10 (16) | C41—C46—H46 | 120.4 |
C38—C33—C34 | 111.63 (19) | C45—C46—H46 | 120.4 |
N3—C33—H33 | 108.0 | C44—C47—H47A | 109.5 |
C38—C33—H33 | 108.0 | C44—C47—H47B | 109.5 |
C34—C33—H33 | 108.0 | H47A—C47—H47B | 109.5 |
C33—C34—C35 | 110.6 (2) | C44—C47—H47C | 109.5 |
C33—C34—H34A | 109.5 | H47A—C47—H47C | 109.5 |
C35—C34—H34A | 109.5 | H47B—C47—H47C | 109.5 |
C33—C34—H34B | 109.5 | C52—C51—C55 | 117.27 (18) |
C35—C34—H34B | 109.5 | C52—C51—C5 | 123.40 (17) |
H34A—C34—H34B | 108.1 | C55—C51—C5 | 119.26 (17) |
C36—C35—C34 | 110.3 (2) | C51—C52—C53 | 118.8 (2) |
C36—C35—H35A | 109.6 | C51—C52—H52 | 120.6 |
C34—C35—H35A | 109.6 | C53—C52—H52 | 120.6 |
C36—C35—H35B | 109.6 | N5—C53—C52 | 124.4 (2) |
C34—C35—H35B | 109.6 | N5—C53—H53 | 117.8 |
H35A—C35—H35B | 108.1 | C52—C53—H53 | 117.8 |
C35—C36—C37 | 111.3 (2) | N5—C54—C55 | 124.3 (2) |
C35—C36—H36A | 109.4 | N5—C54—H54 | 117.9 |
C37—C36—H36A | 109.4 | C55—C54—H54 | 117.9 |
C35—C36—H36B | 109.4 | C54—C55—C51 | 119.3 (2) |
C37—C36—H36B | 109.4 | C54—C55—H55 | 120.3 |
H36A—C36—H36B | 108.0 | C51—C55—H55 | 120.3 |
C5—N1—N2—C3 | −0.1 (2) | C34—C33—C38—C37 | −56.4 (3) |
N1—N2—C3—N4 | −0.1 (2) | C36—C37—C38—C33 | 56.1 (3) |
N1—N2—C3—S3 | 178.86 (15) | C3—N4—C41—C42 | 76.5 (2) |
C5—N4—C3—N2 | 0.3 (2) | C5—N4—C41—C42 | −116.5 (2) |
C41—N4—C3—N2 | 170.03 (16) | C3—N4—C41—C46 | −98.6 (2) |
C5—N4—C3—S3 | −178.82 (14) | C5—N4—C41—C46 | 68.3 (3) |
C41—N4—C3—S3 | −9.0 (3) | C46—C41—C42—C43 | 1.2 (3) |
C31—S3—C3—N2 | 1.9 (2) | N4—C41—C42—C43 | −173.85 (18) |
C31—S3—C3—N4 | −179.24 (16) | C41—C42—C43—C44 | −0.2 (3) |
N2—N1—C5—N4 | 0.2 (2) | C42—C43—C44—C45 | −1.7 (3) |
N2—N1—C5—C51 | 178.91 (17) | C42—C43—C44—C47 | 177.8 (2) |
C3—N4—C5—N1 | −0.3 (2) | C43—C44—C45—C46 | 2.7 (4) |
C41—N4—C5—N1 | −169.07 (17) | C47—C44—C45—C46 | −176.8 (2) |
C3—N4—C5—C51 | −178.93 (17) | C42—C41—C46—C45 | −0.3 (3) |
C41—N4—C5—C51 | 12.3 (3) | N4—C41—C46—C45 | 174.84 (19) |
C3—S3—C31—C32 | 176.56 (15) | C44—C45—C46—C41 | −1.7 (4) |
C33—N3—C32—O3 | −2.9 (3) | N1—C5—C51—C52 | −149.1 (2) |
C33—N3—C32—C31 | 177.03 (17) | N4—C5—C51—C52 | 29.3 (3) |
S3—C31—C32—O3 | −16.0 (3) | N1—C5—C51—C55 | 27.6 (3) |
S3—C31—C32—N3 | 164.05 (15) | N4—C5—C51—C55 | −153.98 (19) |
C32—N3—C33—C38 | −71.5 (3) | C55—C51—C52—C53 | 0.6 (3) |
C32—N3—C33—C34 | 164.5 (2) | C5—C51—C52—C53 | 177.4 (2) |
N3—C33—C34—C35 | −179.4 (2) | C54—N5—C53—C52 | −1.2 (4) |
C38—C33—C34—C35 | 56.5 (3) | C51—C52—C53—N5 | 0.4 (4) |
C33—C34—C35—C36 | −56.4 (3) | C53—N5—C54—C55 | 1.0 (4) |
C34—C35—C36—C37 | 57.4 (3) | N5—C54—C55—C51 | −0.1 (4) |
C35—C36—C37—C38 | −57.3 (3) | C52—C51—C55—C54 | −0.7 (3) |
N3—C33—C38—C37 | −179.0 (2) | C5—C51—C55—C54 | −177.60 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H11W···O2Wi | 0.87 (3) | 1.90 (3) | 2.763 (3) | 172 (3) |
N3—H3···O1W | 0.86 | 1.97 | 2.827 (2) | 171 |
O2W—H22W···N2i | 0.86 (3) | 2.03 (3) | 2.873 (2) | 167 (3) |
O2W—H21W···N1 | 0.83 (4) | 2.01 (4) | 2.819 (2) | 165 (3) |
O1W—H12W···O3ii | 0.84 (2) | 2.09 (2) | 2.905 (3) | 164 (5) |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C22H25N5OS·2H2O |
Mr | 443.56 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 12.3634 (10), 6.8031 (4), 28.077 (2) |
β (°) | 90.306 (7) |
V (Å3) | 2361.5 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.17 |
Crystal size (mm) | 0.68 × 0.43 × 0.15 |
Data collection | |
Diffractometer | Stoe IPDS II diffractometer |
Absorption correction | Integration (X-RED32; Stoe & Cie, 2002) |
Tmin, Tmax | 0.921, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26676, 4135, 2947 |
Rint | 0.048 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.107, 1.03 |
No. of reflections | 4135 |
No. of parameters | 298 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.17, −0.17 |
Computer programs: X-AREA (Stoe & Cie, 2002), X-AREA, X-RED32 (Stoe & Cie, 2002), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999) and PLATON (Spek, 2003).
O3—C32 | 1.230 (2) | N4—C5 | 1.371 (2) |
N1—C5 | 1.308 (2) | N4—C41 | 1.443 (2) |
N2—C3 | 1.308 (2) | C5—C51 | 1.470 (2) |
N4—C3 | 1.369 (2) | C31—C32 | 1.513 (2) |
C3—S3—C31 | 98.69 (8) | N4—C3—S3 | 120.55 (12) |
C5—N1—N2 | 108.27 (13) | N1—C5—N4 | 109.51 (15) |
C3—N2—N1 | 106.72 (14) | C32—C31—S3 | 107.43 (13) |
C32—N3—C33 | 123.56 (16) | O3—C32—N3 | 124.11 (17) |
C3—N4—C5 | 104.98 (14) | O3—C32—C31 | 120.80 (17) |
N2—C3—N4 | 110.52 (15) | N3—C32—C31 | 115.09 (16) |
N2—C3—S3 | 128.92 (14) | ||
C3—S3—C31—C32 | 176.56 (15) | C33—N3—C32—C31 | 177.03 (17) |
C33—N3—C32—O3 | −2.9 (3) | S3—C31—C32—O3 | −16.0 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H11W···O2Wi | 0.87 (3) | 1.90 (3) | 2.763 (3) | 172 (3) |
N3—H3···O1W | 0.86 | 1.97 | 2.827 (2) | 170.9 |
O2W—H22W···N2i | 0.86 (3) | 2.03 (3) | 2.873 (2) | 167 (3) |
O2W—H21W···N1 | 0.83 (4) | 2.01 (4) | 2.819 (2) | 165 (3) |
O1W—H12W···O3ii | 0.84 (2) | 2.09 (2) | 2.905 (3) | 164 (5) |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x, y−1, z. |
1,2,4-Triazole and its derivatives represent one of the most biologically active classes of compounds, possessing a wide spectrum of activities including antibacterial, antifungal, antiviral, anti-inflammatory, anticonvulsant, antidepressant, antihypertensive, analgesic and hypoglycaemic properties (Abbas & Khalil, 2005; Holla et al., 1998; Hovsepian et al., 2004). In addition to these important biological applications, mercapto-1,2,4-triazoles are also of great utility in preparative organic chemistry, and triazolothiadiazines, for example, in the presence of various reagents, undergo different types of reaction to yield other heterocyclic compounds, e.g. thiazolotriazoles, triazolothiadizoles and triazolothiazepines. The amino and mercapto groups of these compounds serve as readily accessible nucleophilic centres for the preparation of N-bridged heterocycles (Shaker, 2006). Furthermore, there have been some studies of the electronic structures and thiol–thione tautomeric equilibrium of heterocyclic thione derivatives (Koparır, Çetin & Cansız, 2005; Coyanis et al., 2002). Substituted 1,2,4-triazoles have been actively studied as bridging ligands coordinating through their vicinal N atoms (Mills et al., 2002; Li et al., 2003, 2006; Zaleski et al., 2005). It is of interest that some complexes containing 1,2,4-triazole ligands have particular structures and specific magnetic properties (Vreugdenhil et al., 1987; van Albada et al., 1984; Vos et al., 1983; Kahn & Martinez, 1998). Taking into account these important properties, the present single-crystal X-ray diffraction study of the title compound, (III), was carried out and the results are presented here.
In the present study, the reaction of 4-(p-tolyl)-5-pyridin-4-yl-4H-1,2,4-triazole-3-thiol, (I), with 2-chloro-N-cyclohexylacetamide, (II), in a basic medium gave the corresponding N-cyclohexyl-2-[5-(pyridin-4-yl)-4-p-tolyl-4H-1,2,4-triazol-3-ylthio] acetamide dihydrate, (III), in close to quantitative yield (65%) (Hovsepian et al., 2004). The reaction sequences depicted in the scheme were followed to obtain the new compound. The structure of this compound has been confirmed by IR and 1H NMR spectroscopies.
A view of the hydrogen-bonded structure of (III) and its atom-numbering scheme are shown in Fig. 1. Selected geometric parameters are listed in Table 1. The asymmetric unit of (III) is made up of just one organic moiety and two water molecules. The organic component is composed of a central 1,2,4-triazole ring, with an N-cyclohexyl-2-mercaptoacetamide group connected to the 3-position of the ring, a toluene group in the 4-position and a pyridine ring in the 5-position. As expected, the 1,2,4-triazole and pyridine rings are planar, as are all similar fragments reported in the Cambridge Structural Database (CSD, Version?; CONQUEST, Version 3.6; Allen, 2002), which can be attributed to a wide range of electron delocalization [maximum deviations of 0.0015 (11) and −0.0067 (17) Å for atoms N4 and N5, respectively]. The cyclohexane ring adopts a chair conformation, as is evident from the puckering parameters for the atom sequence C33–C38 [Q = 0.578 (3) Å, θ = 180 (3)° and ϕ = 360 (3)°; Cremer & Pople, 1975]. Atoms C33 and C36 are on opposite sides of the C34/C35/C37/C38 plane and displaced from it by −0.234 (2) and 0.243 (2) Å, respectively. The phenyl ring is essentially planar and twisted out of the plane of the triazole ring. The dihedral angle between these planes is 74.12 (7)°. The dihedral angle between the triazole and pyridine rings is 28.55 (10)°. A non-planar disposition of the three rings has been observed in similar 1,2,4-triazole derivatives (Zhu et al., 2000; Bruno et al., 2003; Yılmaz et al., 2005). The mercaptoacetamide bridge linking the triazole ring with the cyclohexane ring is not planar, and the ΦCC torsion angle (S3—C31—C32—N3) is 164.05 (15)°, which shows that the conformation about the C31—C32 bond is (+)-antiperiplanar.
The interatomic distances within the triazole ring are not equal, ranging from 1.308 (2) to 1.388 (2) Å. The C—N bonds in the ring are classified into localized single (e.g. N4—C3 and N4—C5) and double bonds (e.g. N1═C5 and N2═C3). The N4—C5 single bond is associated with a larger endo angle, N4—C5—C51, whereas the N1═C5 double bond has a smaller exo angle, N1═C5—C51. The difference between the S3—C3 and S3—C31 bond distances [1.7319 (18) and 1.7880 (19) Å, respectively] can be attributed to the different hybridization of the Csp2 and Csp3 atoms. The N1═C5 and N2═C3 bond distances are in a good agreement with those found for structures containing the 1,2,4-triazole ring (Wang et al., 1998; Özbey et al., 1999; Zhu et al., 2000; Bruno et al., 2003; Dinçer et al., 2005). The N—N bond length is 1.388 (2) Å, which is smaller than a pure single bond (1.41 Å; Burke-Laing & Laing, 1976). The fact that the C3—N4 and C5—N4 bond distances are shorter than the C41—N4 bond distance can be considered as possible evidence of conjugation over the whole of the triazole moiety. Furthermore, the C—N bond distances in the mercaptoacetamide linkage are quite different. The C32—N3 bond length [1.314 (2) Å] is significantly shorter than the C33—N3 bond [1.460 (2) Å], which is indicative of some multiple-bond character. The sum of the angles around atom N3 is 360°, indicating sp2 hybridization. Scrutiny of the amide link shows that the delocalization of electron density in the planar H—N—C═O unit is due to n(N3) → π*(C32═O3) donation. The remaining bond lengths in (III) show no unusual values.
In the crystal structure of (III), the molecules are packed in columns running along the b axis, and linked to each other by a combination of one two-centre N—H···O hydrogen bond and four two-centre O—H···O hydrogen bonds, in which the solvent water molecules lead to a number of intermolecular hydrogen bonds (Table 2). Taking these entities alone first, the water (O2W) molecule at (x, y, z) participates in O2W—H21W···N1 and O2W—H22W···N2i hydrogen bonds [symmetry code: (i) −x + 1, −y, −z + 1], forming a centrosymmetric R44(10) ring (Bernstein et al., 1995). Another ring forms from a combination of hydrogen bonds [N3—H3···O1W, O1W—H11W···O2Wi and O2W—H22W···N2i]. Together, these form an R33(11) ring (Fig. 2).
In addition to these hydrogen bonds occurring between molecules in inversion-related columns, there are also O—H···O hydrogen bonds between the molecules in each column. In this interaction, the water molecule (O1W) at (x, y, z) acts as a hydrogen-bond donor to carbonyl atom O3 at (x, y − 1, z). This hydrogen bond, together with N3—H3···O1W, links the molecules in each column in a zigzag arrangement.
Water is potentially capable of participating in four hydrogen bonds but frequently shows a three-coordinate configuration (Jeffrey & Maluszynska, 1990). This is illustrated in the case of (III), where atoms O1W and O2W donate two hydrogen bonds but accept one. A centrosymmetric π–π stacking interaction also plays a role in the crystal packing, which takes the form of stacks of triazole rings. The triazole rings of the molecules at (x, y, z) and (−x + 1, −y + 1, −z + 1) are strictly parallel, with an interplanar spacing of 3.343 (2) Å. The ring-centroid separation is 3.691 (2) Å, corresponding to a near-ideal ring offset of 1.564 (2) Å (Fig. 3).