Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807056693/rk2053sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807056693/rk2053Isup2.hkl |
CCDC reference: 672925
The title compound was synthesized by a conventional liquid-phase method, and purified by silica-gel column chromatography and re-crystallization, respectively. Crystals were grown from ethylacetate and methanol (3:1) solutions by vapor diffusion method. CD spectra were measured by JASCO J-820 dichrograph at approximate 0.05 mmol dm-3 peptide concentrations. Spectra were scanned at 5 nm.min-1 speed with 0.1 nm interval-uptake to a computer. Data were averaged at each 1 nm and plotted.
H atoms were treated as riding atoms with distances C–H = 0.96–0.98Å and N–H = 0.86 Å; Uiso(H) = 1.2Ueq(C), Uiso(H) = 1.5Ueq(Cmethyl) and Uiso(H) = 1.2Ueq(N). H atoms of the water molecule were found in a difference Fourier map considering hydrogen-bond networks and refined with Uiso(H) = 1.5Ueq(O). In the absence of any significant anomalous scattering, 2290 Friedel pairs were merged prior to the final refinements, and the absolute structure was set by reference to the known chirality of the amino acid employed.
Data collection: SMART (Bruker, 1998); cell refinement: SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).
C22H31N3O6·H2O | F(000) = 968 |
Mr = 451.51 | Dx = 1.245 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 7049 reflections |
a = 9.0814 (8) Å | θ = 2.4–22.1° |
b = 11.6889 (10) Å | µ = 0.09 mm−1 |
c = 22.685 (2) Å | T = 296 K |
V = 2408.1 (4) Å3 | Needle, colourless |
Z = 4 | 0.40 × 0.20 × 0.20 mm |
Bruker SMART APEX CCD area-detector diffractometer | 3002 independent reflections |
Radiation source: MacScience M18XCE (rotating anode) | 2771 reflections with I > 2σ(I) |
Confocal multilayer optics monochromator | Rint = 0.031 |
Detector resolution: 8.366 pixels mm-1 | θmax = 27.1°, θmin = 1.8° |
ω–scan | h = −11→11 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −14→14 |
Tmin = 0.912, Tmax = 0.982 | l = −28→29 |
28185 measured reflections |
Refinement on F2 | Primary atom site location: Direct |
Least-squares matrix: Full | Secondary atom site location: Difmap |
R[F2 > 2σ(F2)] = 0.060 | Hydrogen site location: Geom |
wR(F2) = 0.177 | H-atom parameters constrained |
S = 1.11 | w = 1/[σ2(Fo2) + (0.1079P)2 + 0.5338P] where P = (Fo2 + 2Fc2)/3 |
3002 reflections | (Δ/σ)max = 0.001 |
289 parameters | Δρmax = 0.28 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
C22H31N3O6·H2O | V = 2408.1 (4) Å3 |
Mr = 451.51 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 9.0814 (8) Å | µ = 0.09 mm−1 |
b = 11.6889 (10) Å | T = 296 K |
c = 22.685 (2) Å | 0.40 × 0.20 × 0.20 mm |
Bruker SMART APEX CCD area-detector diffractometer | 3002 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2771 reflections with I > 2σ(I) |
Tmin = 0.912, Tmax = 0.982 | Rint = 0.031 |
28185 measured reflections |
R[F2 > 2σ(F2)] = 0.060 | 0 restraints |
wR(F2) = 0.177 | H-atom parameters constrained |
S = 1.11 | Δρmax = 0.28 e Å−3 |
3002 reflections | Δρmin = −0.27 e Å−3 |
289 parameters |
Geometry. Cremer & Pople Puckering Parameters ———————————– Q(2) = 0.4080 (47) Å, Phi(2) = 261.2 (5)° The equation of the plane is of the form: P * x + Q * y + R * z - S = 0 where P, Q, R, S are constants and x, y, z are fractional coordinates. P = 6.063 (7), Q = 5.023 (11), R = -13.79 (2), S = -3.43 (3) Atom Distance x y z X Y Z O10 0.033 (3) 0.9104 1.0015 1.0110 8.2677 11.7064 22.9345 O14 - 0.023 (3) 0.7517 0.9726 0.9348 6.8265 11.3686 21.2050 N20 - 0.007 (3) 0.9224 0.8418 0.9611 8.3767 9.8397 21.8016 C14 - 0.003 (3) 0.8530 0.9413 0.9665 7.7464 11.0028 21.9251 C20 0.032 (3) 0.8853 0.7638 0.9135 8.0398 8.9280 20.7223 H20 - 0.03253 0.9899 0.8235 0.9859 8.9897 9.6258 22.3651 P = -2.027 (10), Q =11.121 (5), R = 4.81 (3), S = 11.14 (3) Atom Distance x y z X Y Z O28 0.008 (2) 0.6619 0.7070 0.9607 6.0110 8.2641 21.7944 N30 max 0.062 (2) 0.6433 0.7499 0.8650 5.8421 8.7655 19.6218 C20 - 0.041 (2) 0.8853 0.7638 0.9135 8.0398 8.9280 20.7223 C28 0.023 (2) 0.7192 0.7387 0.9147 6.5313 8.6346 20.7497 C30 - 0.051 (4) 0.4893 0.7135 0.8609 4.4435 8.3400 19.5297 P = -1.364 (12), Q = -5.598 (12), R = 19.621 (12), S = 12.24 (2) Atom Distance x y z X Y Z O34 0.009 (3) 0.2493 0.7954 0.8686 2.2640 9.2973 19.7040 N40 0.002 (3) 0.4315 0.8956 0.9095 3.9186 10.4686 20.6322 C30 - 0.011 (3) 0.4893 0.7135 0.8609 4.4435 8.3400 19.5297 C34 0.002 (3) 0.3787 0.8057 0.8802 3.4391 9.4177 19.9664 C40 - 0.012 (3) 0.3298 0.9842 0.9270 2.9950 11.5042 21.0288 H40 0.01105 0.5237 0.9006 0.9178 4.7559 10.5270 20.8203 |
x | y | z | Uiso*/Ueq | ||
C10 | 0.8478 (4) | 1.1109 (3) | 1.02972 (16) | 0.0502 (8) | |
O10 | 0.9104 (4) | 1.0015 (2) | 1.01100 (14) | 0.0718 (9) | |
C11 | 0.9449 (6) | 1.1437 (4) | 1.0808 (3) | 0.0986 (19) | |
H11A | 1.0446 | 1.1518 | 1.0673 | 0.148* | |
H11B | 0.9404 | 1.0853 | 1.1105 | 0.148* | |
H11C | 0.9117 | 1.2150 | 1.0971 | 0.148* | |
C12 | 0.6942 (6) | 1.0963 (5) | 1.0481 (3) | 0.0984 (18) | |
H12A | 0.6356 | 1.0749 | 1.0146 | 0.148* | |
H12B | 0.6580 | 1.1669 | 1.0641 | 0.148* | |
H12C | 0.6884 | 1.0375 | 1.0775 | 0.148* | |
C13 | 0.8604 (8) | 1.1983 (4) | 0.9807 (3) | 0.0990 (19) | |
H13A | 0.9619 | 1.2070 | 0.9698 | 0.149* | |
H13B | 0.8224 | 1.2704 | 0.9941 | 0.149* | |
H13C | 0.8048 | 1.1728 | 0.9472 | 0.149* | |
C14 | 0.8530 (4) | 0.9413 (3) | 0.96650 (14) | 0.0468 (7) | |
O14 | 0.7517 (3) | 0.9726 (2) | 0.93476 (12) | 0.0571 (7) | |
N20 | 0.9224 (3) | 0.8418 (2) | 0.96106 (12) | 0.0442 (6) | |
H20 | 0.9899 | 0.8235 | 0.9859 | 0.053* | |
C20 | 0.8853 (3) | 0.7638 (2) | 0.91348 (12) | 0.0358 (6) | |
H20A | 0.9126 | 0.7976 | 0.8755 | 0.043* | |
C21 | 0.9679 (3) | 0.6509 (3) | 0.92253 (13) | 0.0432 (7) | |
H21A | 1.0725 | 0.6667 | 0.9258 | 0.052* | |
H21B | 0.9360 | 0.6165 | 0.9593 | 0.052* | |
C22 | 0.9433 (4) | 0.5669 (3) | 0.87295 (14) | 0.0444 (7) | |
C23 | 1.0342 (5) | 0.5667 (3) | 0.82448 (15) | 0.0584 (9) | |
H23 | 1.1119 | 0.6184 | 0.8223 | 0.070* | |
C24 | 1.0108 (6) | 0.4904 (4) | 0.77903 (18) | 0.0772 (13) | |
H24 | 1.0737 | 0.4909 | 0.7467 | 0.093* | |
C25 | 0.8975 (7) | 0.4143 (4) | 0.7808 (2) | 0.0861 (16) | |
H25 | 0.8818 | 0.3640 | 0.7496 | 0.103* | |
C26 | 0.8071 (6) | 0.4129 (4) | 0.8288 (2) | 0.0812 (14) | |
H26 | 0.7302 | 0.3604 | 0.8306 | 0.097* | |
C27 | 0.8288 (5) | 0.4889 (3) | 0.87470 (19) | 0.0617 (9) | |
H27 | 0.7659 | 0.4876 | 0.9070 | 0.074* | |
C28 | 0.7192 (3) | 0.7387 (2) | 0.91469 (12) | 0.0356 (6) | |
O28 | 0.6619 (2) | 0.7070 (2) | 0.96074 (9) | 0.0492 (5) | |
N30 | 0.6433 (3) | 0.7499 (2) | 0.86497 (10) | 0.0401 (5) | |
C30 | 0.4893 (4) | 0.7135 (3) | 0.86091 (15) | 0.0480 (7) | |
H30 | 0.4743 | 0.6437 | 0.8841 | 0.058* | |
C31 | 0.4722 (5) | 0.6873 (4) | 0.79539 (19) | 0.0746 (13) | |
H31A | 0.5092 | 0.6117 | 0.7858 | 0.090* | |
H31B | 0.3702 | 0.6931 | 0.7830 | 0.090* | |
C32 | 0.5646 (5) | 0.7791 (5) | 0.76797 (16) | 0.0762 (13) | |
H32A | 0.5131 | 0.8518 | 0.7680 | 0.091* | |
H32B | 0.5904 | 0.7595 | 0.7277 | 0.091* | |
C33 | 0.7009 (4) | 0.7845 (4) | 0.80662 (14) | 0.0576 (9) | |
H33A | 0.7761 | 0.7320 | 0.7929 | 0.069* | |
H33B | 0.7413 | 0.8613 | 0.8078 | 0.069* | |
C34 | 0.3787 (3) | 0.8057 (3) | 0.88016 (15) | 0.0468 (7) | |
O34 | 0.2493 (3) | 0.7954 (3) | 0.86859 (15) | 0.0707 (8) | |
N40 | 0.4315 (3) | 0.8956 (2) | 0.90951 (13) | 0.0482 (6) | |
H40 | 0.5237 | 0.9006 | 0.9178 | 0.058* | |
C40 | 0.3298 (4) | 0.9842 (3) | 0.92699 (15) | 0.0550 (8) | |
H40A | 0.3772 | 1.0344 | 0.9553 | 0.066* | |
H40B | 0.2450 | 0.9497 | 0.9460 | 0.066* | |
C41 | 0.2794 (4) | 1.0531 (3) | 0.87493 (16) | 0.0509 (8) | |
O41 | 0.3458 (4) | 1.0663 (3) | 0.83062 (14) | 0.0852 (10) | |
O42 | 0.1512 (4) | 1.1022 (3) | 0.88564 (11) | 0.0715 (8) | |
C42 | 0.0908 (6) | 1.1746 (5) | 0.8400 (2) | 0.0863 (15) | |
H42A | −0.0019 | 1.2051 | 0.8529 | 0.129* | |
H42B | 0.0764 | 1.1304 | 0.8048 | 0.129* | |
H42C | 0.1578 | 1.2362 | 0.8321 | 0.129* | |
O1 | 0.6824 (7) | 1.0983 (6) | 0.8311 (2) | 0.164 (3) | |
H1 | 0.5875 | 1.0888 | 0.8283 | 0.246* | |
H2 | 0.7008 | 1.0675 | 0.8637 | 0.246* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C10 | 0.0463 (17) | 0.0414 (15) | 0.0630 (19) | −0.0005 (14) | 0.0013 (16) | −0.0147 (14) |
O10 | 0.0724 (17) | 0.0570 (15) | 0.0861 (18) | 0.0250 (14) | −0.0374 (16) | −0.0325 (14) |
C11 | 0.102 (4) | 0.076 (3) | 0.118 (4) | 0.021 (3) | −0.040 (4) | −0.056 (3) |
C12 | 0.071 (3) | 0.107 (4) | 0.118 (4) | −0.025 (3) | 0.031 (3) | −0.045 (3) |
C13 | 0.142 (5) | 0.054 (2) | 0.102 (4) | −0.025 (3) | 0.013 (4) | 0.002 (2) |
C14 | 0.0425 (16) | 0.0442 (15) | 0.0538 (17) | 0.0041 (13) | −0.0115 (14) | −0.0057 (14) |
O14 | 0.0592 (14) | 0.0439 (12) | 0.0682 (15) | 0.0113 (11) | −0.0210 (12) | −0.0070 (11) |
N20 | 0.0409 (13) | 0.0408 (12) | 0.0508 (14) | 0.0078 (11) | −0.0126 (11) | −0.0085 (11) |
C20 | 0.0359 (13) | 0.0376 (13) | 0.0338 (13) | 0.0024 (11) | 0.0017 (11) | −0.0030 (11) |
C21 | 0.0406 (15) | 0.0422 (15) | 0.0469 (16) | 0.0069 (13) | −0.0018 (13) | −0.0044 (13) |
C22 | 0.0482 (16) | 0.0366 (14) | 0.0485 (16) | 0.0106 (13) | −0.0047 (14) | −0.0050 (13) |
C23 | 0.066 (2) | 0.0539 (19) | 0.0554 (19) | 0.0128 (18) | 0.0079 (17) | −0.0022 (16) |
C24 | 0.098 (3) | 0.074 (3) | 0.059 (2) | 0.030 (3) | 0.004 (2) | −0.013 (2) |
C25 | 0.123 (4) | 0.065 (3) | 0.070 (3) | 0.027 (3) | −0.024 (3) | −0.029 (2) |
C26 | 0.080 (3) | 0.059 (2) | 0.104 (4) | −0.002 (2) | −0.020 (3) | −0.023 (2) |
C27 | 0.061 (2) | 0.0507 (19) | 0.074 (2) | 0.0009 (18) | 0.000 (2) | −0.0106 (17) |
C28 | 0.0368 (14) | 0.0333 (13) | 0.0368 (13) | 0.0023 (11) | 0.0047 (11) | −0.0060 (11) |
O28 | 0.0439 (11) | 0.0626 (13) | 0.0410 (11) | 0.0012 (11) | 0.0082 (10) | 0.0063 (10) |
N30 | 0.0385 (12) | 0.0438 (13) | 0.0381 (12) | 0.0012 (11) | −0.0003 (10) | −0.0048 (10) |
C30 | 0.0407 (15) | 0.0455 (16) | 0.0579 (18) | −0.0008 (14) | −0.0050 (14) | −0.0133 (14) |
C31 | 0.065 (2) | 0.092 (3) | 0.068 (2) | 0.004 (2) | −0.018 (2) | −0.040 (2) |
C32 | 0.077 (3) | 0.114 (4) | 0.0384 (17) | 0.023 (3) | −0.0121 (18) | −0.012 (2) |
C33 | 0.059 (2) | 0.078 (2) | 0.0359 (15) | 0.008 (2) | 0.0032 (14) | 0.0001 (15) |
C34 | 0.0370 (15) | 0.0526 (17) | 0.0507 (17) | −0.0009 (14) | −0.0010 (13) | −0.0005 (14) |
O34 | 0.0381 (12) | 0.0759 (17) | 0.098 (2) | −0.0033 (13) | −0.0020 (13) | −0.0149 (16) |
N40 | 0.0412 (14) | 0.0477 (14) | 0.0556 (15) | 0.0058 (12) | −0.0032 (12) | −0.0073 (12) |
C40 | 0.056 (2) | 0.0549 (18) | 0.0539 (19) | 0.0105 (17) | 0.0059 (16) | −0.0049 (15) |
C41 | 0.0487 (18) | 0.0490 (17) | 0.0550 (19) | 0.0046 (15) | −0.0004 (15) | −0.0061 (14) |
O41 | 0.077 (2) | 0.103 (2) | 0.0761 (19) | 0.019 (2) | 0.0196 (18) | 0.0275 (18) |
O42 | 0.0710 (17) | 0.0838 (19) | 0.0597 (14) | 0.0340 (16) | 0.0007 (14) | −0.0016 (14) |
C42 | 0.093 (3) | 0.097 (4) | 0.069 (3) | 0.037 (3) | −0.018 (3) | −0.003 (2) |
O1 | 0.137 (5) | 0.208 (6) | 0.145 (4) | −0.028 (5) | −0.035 (4) | 0.081 (5) |
C10—O10 | 1.462 (4) | C26—H26 | 0.9300 |
C10—C12 | 1.466 (6) | C27—H27 | 0.9300 |
C10—C11 | 1.505 (6) | C28—O28 | 1.224 (3) |
C10—C13 | 1.514 (6) | C28—N30 | 1.328 (4) |
O10—C14 | 1.336 (4) | N30—C30 | 1.465 (4) |
C11—H11A | 0.9600 | N30—C33 | 1.480 (4) |
C11—H11B | 0.9600 | C30—C31 | 1.526 (5) |
C11—H11C | 0.9600 | C30—C34 | 1.537 (5) |
C12—H12A | 0.9600 | C30—H30 | 0.9800 |
C12—H12B | 0.9600 | C31—C32 | 1.498 (7) |
C12—H12C | 0.9600 | C31—H31A | 0.9700 |
C13—H13A | 0.9600 | C31—H31B | 0.9700 |
C13—H13B | 0.9600 | C32—C33 | 1.518 (5) |
C13—H13C | 0.9600 | C32—H32A | 0.9700 |
C14—O14 | 1.224 (4) | C32—H32B | 0.9700 |
C14—N20 | 1.329 (4) | C33—H33A | 0.9700 |
N20—C20 | 1.453 (3) | C33—H33B | 0.9700 |
N20—H20 | 0.8600 | C34—O34 | 1.210 (4) |
C20—C21 | 1.531 (4) | C34—N40 | 1.333 (4) |
C20—C28 | 1.537 (4) | N40—C40 | 1.444 (4) |
C20—H20A | 0.9800 | N40—H40 | 0.8600 |
C21—C22 | 1.510 (4) | C40—C41 | 1.501 (5) |
C21—H21A | 0.9700 | C40—H40A | 0.9700 |
C21—H21B | 0.9700 | C40—H40B | 0.9700 |
C22—C23 | 1.375 (5) | C41—O41 | 1.182 (5) |
C22—C27 | 1.384 (5) | C41—O42 | 1.320 (5) |
C23—C24 | 1.380 (6) | O42—C42 | 1.445 (5) |
C23—H23 | 0.9300 | C42—H42A | 0.9600 |
C24—C25 | 1.361 (8) | C42—H42B | 0.9600 |
C24—H24 | 0.9300 | C42—H42C | 0.9600 |
C25—C26 | 1.364 (8) | O1—H1 | 0.872 |
C25—H25 | 0.9300 | O1—H2 | 0.838 |
C26—C27 | 1.383 (6) | ||
O10—C10—C12 | 110.5 (4) | C27—C26—H26 | 119.7 |
O10—C10—C11 | 102.6 (3) | C26—C27—C22 | 120.6 (4) |
C12—C10—C11 | 111.6 (4) | C26—C27—H27 | 119.7 |
O10—C10—C13 | 110.3 (3) | C22—C27—H27 | 119.7 |
C12—C10—C13 | 111.0 (5) | O28—C28—N30 | 122.3 (3) |
C11—C10—C13 | 110.5 (4) | O28—C28—C20 | 119.3 (3) |
C14—O10—C10 | 121.9 (3) | N30—C28—C20 | 118.4 (2) |
C10—C11—H11A | 109.5 | C28—N30—C30 | 121.3 (3) |
C10—C11—H11B | 109.5 | C28—N30—C33 | 127.1 (3) |
H11A—C11—H11B | 109.5 | C30—N30—C33 | 111.1 (3) |
C10—C11—H11C | 109.5 | N30—C30—C31 | 102.5 (3) |
H11A—C11—H11C | 109.5 | N30—C30—C34 | 113.7 (3) |
H11B—C11—H11C | 109.5 | C31—C30—C34 | 110.6 (3) |
C10—C12—H12A | 109.5 | N30—C30—H30 | 109.9 |
C10—C12—H12B | 109.5 | C31—C30—H30 | 109.9 |
H12A—C12—H12B | 109.5 | C34—C30—H30 | 109.9 |
C10—C12—H12C | 109.5 | C32—C31—C30 | 101.8 (3) |
H12A—C12—H12C | 109.5 | C32—C31—H31A | 111.4 |
H12B—C12—H12C | 109.5 | C30—C31—H31A | 111.4 |
C10—C13—H13A | 109.5 | C32—C31—H31B | 111.4 |
C10—C13—H13B | 109.5 | C30—C31—H31B | 111.4 |
H13A—C13—H13B | 109.5 | H31A—C31—H31B | 109.3 |
C10—C13—H13C | 109.5 | C31—C32—C33 | 104.3 (3) |
H13A—C13—H13C | 109.5 | C31—C32—H32A | 110.9 |
H13B—C13—H13C | 109.5 | C33—C32—H32A | 110.9 |
O14—C14—N20 | 124.3 (3) | C31—C32—H32B | 110.9 |
O14—C14—O10 | 125.5 (3) | C33—C32—H32B | 110.9 |
N20—C14—O10 | 110.2 (3) | H32A—C32—H32B | 108.9 |
C14—N20—C20 | 120.6 (2) | N30—C33—C32 | 102.6 (3) |
C14—N20—H20 | 119.7 | N30—C33—H33A | 111.3 |
C20—N20—H20 | 119.7 | C32—C33—H33A | 111.3 |
N20—C20—C21 | 109.1 (2) | N30—C33—H33B | 111.3 |
N20—C20—C28 | 109.5 (2) | C32—C33—H33B | 111.3 |
C21—C20—C28 | 108.3 (2) | H33A—C33—H33B | 109.2 |
N20—C20—H20A | 110.0 | O34—C34—N40 | 122.4 (3) |
C21—C20—H20A | 110.0 | O34—C34—C30 | 120.2 (3) |
C28—C20—H20A | 110.0 | N40—C34—C30 | 117.4 (3) |
C22—C21—C20 | 112.8 (2) | C34—N40—C40 | 118.2 (3) |
C22—C21—H21A | 109.0 | C34—N40—H40 | 120.9 |
C20—C21—H21A | 109.0 | C40—N40—H40 | 120.9 |
C22—C21—H21B | 109.0 | N40—C40—C41 | 111.3 (3) |
C20—C21—H21B | 109.0 | N40—C40—H40A | 109.4 |
H21A—C21—H21B | 107.8 | C41—C40—H40A | 109.4 |
C23—C22—C27 | 118.2 (3) | N40—C40—H40B | 109.4 |
C23—C22—C21 | 120.5 (3) | C41—C40—H40B | 109.4 |
C27—C22—C21 | 121.2 (3) | H40A—C40—H40B | 108.0 |
C22—C23—C24 | 120.4 (4) | O41—C41—O42 | 123.4 (4) |
C22—C23—H23 | 119.8 | O41—C41—C40 | 125.7 (3) |
C24—C23—H23 | 119.8 | O42—C41—C40 | 110.9 (3) |
C25—C24—C23 | 121.1 (4) | C41—O42—C42 | 117.2 (3) |
C25—C24—H24 | 119.4 | O42—C42—H42A | 109.5 |
C23—C24—H24 | 119.4 | O42—C42—H42B | 109.5 |
C24—C25—C26 | 119.1 (4) | H42A—C42—H42B | 109.5 |
C24—C25—H25 | 120.5 | O42—C42—H42C | 109.5 |
C26—C25—H25 | 120.5 | H42A—C42—H42C | 109.5 |
C25—C26—C27 | 120.5 (5) | H42B—C42—H42C | 109.5 |
C25—C26—H26 | 119.7 | H1—O1—H2 | 101.9 |
C12—C10—O10—C14 | 59.6 (5) | O28—C28—N30—C30 | −6.4 (4) |
C11—C10—O10—C14 | 178.7 (4) | C20—C28—N30—C30 | 172.1 (3) |
C13—C10—O10—C14 | −63.6 (5) | O28—C28—N30—C33 | −178.4 (3) |
C10—O10—C14—O14 | 5.0 (6) | C20—C28—N30—C33 | 0.1 (5) |
C10—O10—C14—N20 | −175.4 (3) | C28—N30—C30—C31 | −153.7 (3) |
O14—C14—N20—C20 | 3.1 (5) | C33—N30—C30—C31 | 19.4 (4) |
O10—C14—N20—C20 | −176.5 (3) | C28—N30—C30—C34 | 86.9 (4) |
C14—N20—C20—C21 | −173.0 (3) | C33—N30—C30—C34 | −100.0 (3) |
C14—N20—C20—C28 | −54.6 (4) | N30—C30—C31—C32 | −37.2 (4) |
N20—C20—C21—C22 | −176.4 (3) | C34—C30—C31—C32 | 84.4 (4) |
C28—C20—C21—C22 | 64.4 (3) | C30—C31—C32—C33 | 42.0 (4) |
C20—C21—C22—C23 | 89.4 (4) | C28—N30—C33—C32 | 178.8 (3) |
C20—C21—C22—C27 | −90.1 (4) | C30—N30—C33—C32 | 6.2 (4) |
C27—C22—C23—C24 | 0.0 (5) | C31—C32—C33—N30 | −30.0 (4) |
C21—C22—C23—C24 | −179.5 (3) | N30—C30—C34—O34 | 165.9 (4) |
C22—C23—C24—C25 | 0.5 (6) | C31—C30—C34—O34 | 51.2 (5) |
C23—C24—C25—C26 | −0.9 (7) | N30—C30—C34—N40 | −14.0 (5) |
C24—C25—C26—C27 | 1.0 (7) | C31—C30—C34—N40 | −128.7 (4) |
C25—C26—C27—C22 | −0.6 (7) | O34—C34—N40—C40 | −1.1 (6) |
C23—C22—C27—C26 | 0.1 (6) | C30—C34—N40—C40 | 178.8 (3) |
C21—C22—C27—C26 | 179.6 (4) | C34—N40—C40—C41 | −72.1 (4) |
N20—C20—C28—O28 | −51.7 (4) | N40—C40—C41—O41 | −26.2 (6) |
C21—C20—C28—O28 | 67.2 (3) | N40—C40—C41—O42 | 156.3 (3) |
N20—C20—C28—N30 | 129.8 (3) | O41—C41—O42—C42 | 0.5 (6) |
C21—C20—C28—N30 | −111.3 (3) | C40—C41—O42—C42 | 178.0 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N40—H40···O14 | 0.86 | 2.27 | 3.097 (4) | 162 |
O1—H1···O41 | 0.87 | 2.21 | 3.080 (7) | 174 |
O1—H2···O14 | 0.84 | 2.01 | 2.843 (6) | 171 |
N20—H20···O28i | 0.86 | 2.01 | 2.864 (3) | 174 |
Symmetry code: (i) x+1/2, −y+3/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C22H31N3O6·H2O |
Mr | 451.51 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 296 |
a, b, c (Å) | 9.0814 (8), 11.6889 (10), 22.685 (2) |
V (Å3) | 2408.1 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.40 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.912, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 28185, 3002, 2771 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.641 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.060, 0.177, 1.11 |
No. of reflections | 3002 |
No. of parameters | 289 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.27 |
Computer programs: SMART (Bruker, 1998), SAINT-Plus (Bruker, 1998), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
N40—H40···O14 | 0.86 | 2.27 | 3.097 (4) | 162 |
O1—H1···O41 | 0.87 | 2.21 | 3.080 (7) | 174 |
O1—H2···O14 | 0.84 | 2.01 | 2.843 (6) | 171 |
N20—H20···O28i | 0.86 | 2.01 | 2.864 (3) | 174 |
Symmetry code: (i) x+1/2, −y+3/2, −z+2. |
The certain motifs have been studied to engineer peptide mimics with well defined conformation and novel functions (Venkatraman et al., 2001). The structural studies of these motifs will provide the important fundamental information for peptide design. A protected tripeptide Boc-Phe-D-Pro-Gly-OMe, that Boc = N-t-butyloxycarbonyl moiety, was designed to form β-turn from motifs of Gramicidin S (Schwyzer & Ludescher, 1968) and analogues (Tamaki et al., 1985) considering a D-Pro-Gly segment of β-hairpin peptide (Espinosa & Gellman, 2000).
The molecular structure of the title compound (I) is shown in Fig.1. A l l peptide bonds are planar with a trans conformation. The distances of the atoms from the best planes of peptide bond are lower than 0.062Å for the C14—N20, C28—N30 and C34—N40 bond planes. The Pro residue shows a ring puckering with amplitude of Q2 = 0.408 (5)Å and phase of ϕ2 = 261.2 (5)° (Cremer & Pople, 1975). The torsion angles, (C14—N20—C20—C28, N20—C20—C28—N30) and (C28—N30—C30—C34, N30—C30—C34—N40), are (-54.6 (4)°, 129.8 (3)°) and (86.9 (4)°, -14.0 (5)°), respectively, and classified as type II β-turn. A N–H···O=C intramolecular hydrogen bond is formed between Gly–NH and Boc=O: N40···O14 = 3.097 (4)Å stabilizing of the β-turn structure. In this crystal, the hydrated water molecule further stabilizes the folded structure by forming O–H···O=C interactions with the carbonyl oxygen atoms (O1···O14 and O1···O41). A N–H···O=C interaction is established between the Gly residue (N20) and Pro residue (O28) translated by (1/2 + x, 3/2 - y, 2 - z). This motif propagates along the a axis (Fig. 2).
The CD spectra of I are measured in acetonitrile solutions changing the trifluoroethanol (TFE) concentration. TFE provides a specific environment conducive to hydrophobic interactions between peptide side chains (Reiersen & Rees, 2000), and is often used to induce structural changes of polypeptides. The isosbestic point around 220 nm indicates the conformational equilibrium, but several concentrations of TFE had little effect on the spectra (Fig.3), indicating that the solution conformations of I are stable with respect to TFE titration. These results indicate that this tripeptide motif forms a stable β-turn structure and could be a candidate to induce β-turn into poplypeptides.