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In the title compound, C
13H
16O
4, the cyclohexene rings adopt a sofa conformation. Adjacent molecules are connected by C-H
O intermolecular interactions. Each molecule is characterized by O-H
O intramolecular hydrogen bonds. The
anti arrangement of the enolic OH group and the carbonyl O atom in the solid state is similar to the
anti arrangement of the NH and carbonyl groups in indigo.
Supporting information
CCDC reference: 152678
The title compound was prepared by the addition of a 40% aqueous solution of formalin (6 ml) to a solution of cyclohexane-1,3-dione (15 g, 0.13 mol) in water (200 ml) and warming until the solution became cloudy. The 2–2'methylenebis(cyclohexane-1,3-dione) started to separate out. The reaction mixture was allowed to stand overnight and the ketone was collected by filtration and dried. Yield 8.0 g (50.6%), m.p. 403–405 K (Setter, 1995).
The H atoms are fixed geometrically and allowed to refine riding on the corresponding non-H atoms.
Data collection: CAD-4 Software (Enraf-Nonius, 1989); cell refinement: CAD-4 Software; data reduction: SDP (Frenz, 1978); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); software used to prepare material for publication: SHELXL97 and PARST (Nardelli, 1995).
2,2'-Methylenebis(3-hydroxy-2-cyclohexen-1-one)
top
Crystal data top
C13H16O4 | Dx = 1.309 Mg m−3 |
Mr = 236.26 | Cu Kα radiation, λ = 1.54184 Å |
Orthorhombic, Pbca | Cell parameters from 15 reflections |
a = 9.9313 (18) Å | θ = 2–28° |
b = 10.3818 (14) Å | µ = 0.80 mm−1 |
c = 23.253 (2) Å | T = 293 K |
V = 2397.5 (6) Å3 | Rectangle, yellow |
Z = 8 | 0.20 × 0.15 × 0.10 mm |
F(000) = 1008 | |
Data collection top
Enraf-Nonius CAD-4 diffractometer | Rint = 0.000 |
Radiation source: fine-focus sealed tube | θmax = 69.8°, θmin = 3.8° |
Graphite monochromator | h = 0→12 |
ω scans | k = 0→12 |
2264 measured reflections | l = 0→28 |
2264 independent reflections | 3 standard reflections every 60 min |
1829 reflections with I > 2σ(I) | intensity decay: 1% |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
wR(F2) = 0.176 | Calculated w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.31 | (Δ/σ)max = 0.003 |
2264 reflections | Δρmax = 0.20 e Å−3 |
157 parameters | Δρmin = −0.14 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0075 (10) |
Crystal data top
C13H16O4 | V = 2397.5 (6) Å3 |
Mr = 236.26 | Z = 8 |
Orthorhombic, Pbca | Cu Kα radiation |
a = 9.9313 (18) Å | µ = 0.80 mm−1 |
b = 10.3818 (14) Å | T = 293 K |
c = 23.253 (2) Å | 0.20 × 0.15 × 0.10 mm |
Data collection top
Enraf-Nonius CAD-4 diffractometer | Rint = 0.000 |
2264 measured reflections | 3 standard reflections every 60 min |
2264 independent reflections | intensity decay: 1% |
1829 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.176 | H-atom parameters constrained |
S = 1.31 | Δρmax = 0.20 e Å−3 |
2264 reflections | Δρmin = −0.14 e Å−3 |
157 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.01461 (15) | 0.37135 (13) | 0.07381 (7) | 0.0597 (5) | |
O2 | 0.10450 (18) | 0.29611 (15) | 0.17239 (7) | 0.0684 (5) | |
H2 | 0.0622 | 0.3172 | 0.1436 | 0.103* | |
O3 | −0.21031 (16) | −0.01946 (14) | 0.04335 (7) | 0.0616 (5) | |
H3 | −0.1828 | −0.0355 | 0.0758 | 0.092* | |
C1 | −0.11522 (17) | 0.18421 (17) | 0.06350 (8) | 0.0422 (5) | |
O4 | −0.11738 (17) | −0.09725 (15) | 0.14432 (7) | 0.0661 (5) | |
C1' | −0.02610 (18) | 0.10732 (18) | 0.16172 (8) | 0.0473 (5) | |
C6' | −0.03227 (19) | −0.0280 (2) | 0.16961 (8) | 0.0510 (5) | |
C6 | −0.16119 (17) | 0.09093 (18) | 0.02628 (8) | 0.0459 (5) | |
C2 | −0.04387 (19) | 0.29085 (17) | 0.04107 (9) | 0.0466 (5) | |
C7 | −0.13556 (18) | 0.17381 (19) | 0.12765 (8) | 0.0472 (5) | |
H7A | −0.1463 | 0.2602 | 0.1429 | 0.057* | |
H7B | −0.2194 | 0.1283 | 0.1344 | 0.057* | |
C2' | 0.0813 (2) | 0.1751 (2) | 0.18380 (9) | 0.0536 (5) | |
C3 | −0.0297 (3) | 0.3098 (2) | −0.02241 (9) | 0.0591 (6) | |
H3A | 0.0551 | 0.2733 | −0.0351 | 0.071* | |
H3B | −0.0284 | 0.4013 | −0.0309 | 0.071* | |
C4 | −0.1442 (2) | 0.2468 (2) | −0.05494 (9) | 0.0586 (6) | |
H4A | −0.1274 | 0.2525 | −0.0960 | 0.070* | |
H4B | −0.2277 | 0.2917 | −0.0467 | 0.070* | |
C5 | −0.1575 (2) | 0.1072 (2) | −0.03767 (9) | 0.0551 (5) | |
H5A | −0.2394 | 0.0720 | −0.0541 | 0.066* | |
H5B | −0.0820 | 0.0590 | −0.0531 | 0.066* | |
C4' | 0.1281 (3) | −0.0052 (3) | 0.25192 (11) | 0.0794 (8) | |
H4'1 | 0.2001 | −0.0486 | 0.2724 | 0.095* | |
H4'2 | 0.0591 | 0.0182 | 0.2795 | 0.095* | |
C5' | 0.0699 (3) | −0.0941 (2) | 0.20758 (10) | 0.0691 (7) | |
H5'1 | 0.1421 | −0.1278 | 0.1838 | 0.083* | |
H5'2 | 0.0273 | −0.1664 | 0.2268 | 0.083* | |
C3' | 0.1823 (3) | 0.1149 (3) | 0.22326 (12) | 0.0769 (8) | |
H3'1 | 0.2078 | 0.1768 | 0.2526 | 0.092* | |
H3'2 | 0.2625 | 0.0930 | 0.2015 | 0.092* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0665 (9) | 0.0484 (8) | 0.0643 (9) | −0.0103 (7) | −0.0127 (7) | 0.0033 (6) |
O2 | 0.0798 (11) | 0.0648 (10) | 0.0606 (10) | −0.0112 (8) | −0.0190 (8) | −0.0001 (7) |
O3 | 0.0608 (9) | 0.0555 (9) | 0.0685 (9) | −0.0158 (7) | −0.0083 (7) | 0.0019 (7) |
C1 | 0.0351 (8) | 0.0455 (10) | 0.0461 (10) | 0.0049 (7) | −0.0007 (7) | −0.0013 (7) |
O4 | 0.0646 (9) | 0.0662 (10) | 0.0676 (10) | −0.0134 (7) | −0.0009 (8) | 0.0105 (7) |
C1' | 0.0460 (10) | 0.0572 (11) | 0.0388 (9) | 0.0024 (8) | 0.0045 (8) | 0.0002 (8) |
C6' | 0.0492 (11) | 0.0605 (12) | 0.0435 (10) | −0.0025 (9) | 0.0076 (8) | 0.0061 (8) |
C6 | 0.0367 (9) | 0.0469 (10) | 0.0540 (11) | 0.0013 (8) | −0.0025 (8) | 0.0001 (8) |
C2 | 0.0427 (9) | 0.0411 (10) | 0.0559 (11) | 0.0039 (7) | −0.0064 (8) | 0.0008 (8) |
C7 | 0.0393 (9) | 0.0531 (11) | 0.0492 (10) | 0.0041 (8) | 0.0063 (8) | −0.0016 (8) |
C2' | 0.0568 (12) | 0.0601 (12) | 0.0439 (9) | −0.0008 (9) | −0.0018 (8) | −0.0006 (9) |
C3 | 0.0675 (14) | 0.0544 (12) | 0.0555 (12) | −0.0041 (10) | 0.0003 (10) | 0.0081 (9) |
C4 | 0.0687 (13) | 0.0604 (13) | 0.0466 (10) | 0.0069 (11) | −0.0093 (10) | 0.0025 (9) |
C5 | 0.0567 (12) | 0.0562 (12) | 0.0524 (11) | 0.0060 (9) | −0.0078 (9) | −0.0063 (9) |
C4' | 0.0877 (18) | 0.0935 (19) | 0.0571 (13) | −0.0018 (14) | −0.0199 (13) | 0.0212 (13) |
C5' | 0.0796 (16) | 0.0706 (15) | 0.0572 (13) | 0.0047 (12) | −0.0043 (12) | 0.0153 (11) |
C3' | 0.0733 (16) | 0.0923 (18) | 0.0650 (14) | −0.0108 (14) | −0.0251 (13) | 0.0136 (13) |
Geometric parameters (Å, º) top
O1—C2 | 1.271 (2) | C2'—C3' | 1.496 (3) |
O2—C2' | 1.304 (3) | C3—C4 | 1.515 (3) |
O2—H2 | 0.8200 | C3—H3A | 0.9700 |
O3—C6 | 1.307 (2) | C3—H3B | 0.9700 |
O3—H3 | 0.8200 | C4—C5 | 1.510 (3) |
C1—C6 | 1.377 (3) | C4—H4A | 0.9700 |
C1—C2 | 1.414 (3) | C4—H4B | 0.9700 |
C1—C7 | 1.509 (2) | C5—H5A | 0.9700 |
O4—C6' | 1.256 (2) | C5—H5B | 0.9700 |
C1'—C2' | 1.377 (3) | C4'—C5' | 1.500 (4) |
C1'—C6' | 1.418 (3) | C4'—C3' | 1.513 (4) |
C1'—C7 | 1.512 (3) | C4'—H4'1 | 0.9700 |
C6'—C5' | 1.510 (3) | C4'—H4'2 | 0.9700 |
C6—C5 | 1.497 (3) | C5'—H5'1 | 0.9700 |
C2—C3 | 1.496 (3) | C5'—H5'2 | 0.9700 |
C7—H7A | 0.9700 | C3'—H3'1 | 0.9700 |
C7—H7B | 0.9700 | C3'—H3'2 | 0.9700 |
| | | |
C2'—O2—H2 | 109.5 | H3A—C3—H3B | 108.0 |
C6—O3—H3 | 109.5 | C3—C4—C5 | 110.32 (17) |
C6—C1—C2 | 119.02 (17) | C3—C4—H4A | 109.6 |
C6—C1—C7 | 121.77 (17) | C5—C4—H4A | 109.6 |
C2—C1—C7 | 119.19 (17) | C3—C4—H4B | 109.6 |
C2'—C1'—C6' | 119.44 (19) | C5—C4—H4B | 109.6 |
C2'—C1'—C7 | 121.25 (18) | H4A—C4—H4B | 108.1 |
C6'—C1'—C7 | 119.28 (18) | C6—C5—C4 | 111.99 (17) |
O4—C6'—C1' | 122.41 (19) | C6—C5—H5A | 109.2 |
O4—C6'—C5' | 117.72 (19) | C4—C5—H5A | 109.2 |
C1'—C6'—C5' | 119.82 (19) | C6—C5—H5B | 109.2 |
O3—C6—C1 | 123.34 (18) | C4—C5—H5B | 109.2 |
O3—C6—C5 | 114.17 (17) | H5A—C5—H5B | 107.9 |
C1—C6—C5 | 122.48 (17) | C5'—C4'—C3' | 110.0 (2) |
O1—C2—C1 | 121.52 (18) | C5'—C4'—H4'1 | 109.7 |
O1—C2—C3 | 117.49 (18) | C3'—C4'—H4'1 | 109.7 |
C1—C2—C3 | 120.94 (17) | C5'—C4'—H4'2 | 109.7 |
C1'—C7—C1 | 117.02 (15) | C3'—C4'—H4'2 | 109.7 |
C1'—C7—H7A | 108.0 | H4'1—C4'—H4'2 | 108.2 |
C1—C7—H7A | 108.0 | C6'—C5'—C4' | 112.4 (2) |
C1'—C7—H7B | 108.0 | C6'—C5'—H5'1 | 109.1 |
C1—C7—H7B | 108.0 | C4'—C5'—H5'1 | 109.1 |
H7A—C7—H7B | 107.3 | C6'—C5'—H5'2 | 109.1 |
O2—C2'—C1' | 123.59 (19) | C4'—C5'—H5'2 | 109.1 |
O2—C2'—C3' | 114.12 (19) | H5'1—C5'—H5'2 | 107.9 |
C1'—C2'—C3' | 122.3 (2) | C2'—C3'—C4' | 112.1 (2) |
C2—C3—C4 | 111.43 (18) | C2'—C3'—H3'1 | 109.2 |
C2—C3—H3A | 109.3 | C4'—C3'—H3'1 | 109.2 |
C4—C3—H3A | 109.3 | C2'—C3'—H3'2 | 109.2 |
C2—C3—H3B | 109.3 | C4'—C3'—H3'2 | 109.2 |
C4—C3—H3B | 109.3 | H3'1—C3'—H3'2 | 107.9 |
| | | |
C2'—C1'—C6'—O4 | −170.41 (18) | C6'—C1'—C2'—O2 | 170.75 (18) |
C7—C1'—C6'—O4 | 7.8 (3) | C7—C1'—C2'—O2 | −7.4 (3) |
C2'—C1'—C6'—C5' | 6.9 (3) | C6'—C1'—C2'—C3' | −9.1 (3) |
C7—C1'—C6'—C5' | −174.98 (18) | C7—C1'—C2'—C3' | 172.8 (2) |
C2—C1—C6—O3 | 169.67 (17) | O1—C2—C3—C4 | −156.59 (18) |
C7—C1—C6—O3 | −8.6 (3) | C1—C2—C3—C4 | 25.9 (3) |
C2—C1—C6—C5 | −9.6 (3) | C2—C3—C4—C5 | −53.1 (2) |
C7—C1—C6—C5 | 172.14 (17) | O3—C6—C5—C4 | 161.36 (17) |
C6—C1—C2—O1 | −171.40 (17) | C1—C6—C5—C4 | −19.3 (3) |
C7—C1—C2—O1 | 6.9 (3) | C3—C4—C5—C6 | 50.0 (2) |
C6—C1—C2—C3 | 6.0 (3) | O4—C6'—C5'—C4' | −157.6 (2) |
C7—C1—C2—C3 | −175.68 (17) | C1'—C6'—C5'—C4' | 25.0 (3) |
C2'—C1'—C7—C1 | 89.4 (2) | C3'—C4'—C5'—C6' | −53.0 (3) |
C6'—C1'—C7—C1 | −88.7 (2) | O2—C2'—C3'—C4' | 159.6 (2) |
C6—C1—C7—C1' | 90.6 (2) | C1'—C2'—C3'—C4' | −20.6 (4) |
C2—C1—C7—C1' | −87.7 (2) | C5'—C4'—C3'—C2' | 50.7 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3B···O1i | 0.97 | 2.57 | 3.522 (3) | 168 |
C5—H5A···O1ii | 0.97 | 2.56 | 3.371 (3) | 141 |
C5′—H5′1···O2iii | 0.97 | 2.65 | 3.525 (3) | 150 |
C5′—H5′2···O2iv | 0.97 | 2.71 | 3.477 (3) | 136 |
O2—H2···O1 | 0.82 | 1.78 | 2.581 (2) | 165 |
O3—H3···O4 | 0.82 | 1.84 | 2.649 (2) | 171 |
Symmetry codes: (i) −x, −y+1, −z; (ii) x−1/2, −y+1/2, −z; (iii) −x+1/2, y−1/2, z; (iv) −x, y−1/2, −z+1/2. |
Experimental details
Crystal data |
Chemical formula | C13H16O4 |
Mr | 236.26 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 293 |
a, b, c (Å) | 9.9313 (18), 10.3818 (14), 23.253 (2) |
V (Å3) | 2397.5 (6) |
Z | 8 |
Radiation type | Cu Kα |
µ (mm−1) | 0.80 |
Crystal size (mm) | 0.20 × 0.15 × 0.10 |
|
Data collection |
Diffractometer | Enraf-Nonius CAD-4 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2264, 2264, 1829 |
Rint | 0.000 |
(sin θ/λ)max (Å−1) | 0.609 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.176, 1.31 |
No. of reflections | 2264 |
No. of parameters | 157 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.20, −0.14 |
Selected geometric parameters (Å, º) topO1—C2 | 1.271 (2) | O3—C6 | 1.307 (2) |
O2—C2' | 1.304 (3) | O4—C6' | 1.256 (2) |
| | | |
O4—C6'—C1' | 122.41 (19) | O1—C2—C1 | 121.52 (18) |
O4—C6'—C5' | 117.72 (19) | O1—C2—C3 | 117.49 (18) |
O3—C6—C1 | 123.34 (18) | O2—C2'—C1' | 123.59 (19) |
O3—C6—C5 | 114.17 (17) | O2—C2'—C3' | 114.12 (19) |
| | | |
C2'—C1'—C6'—O4 | −170.41 (18) | C7—C1'—C2'—O2 | −7.4 (3) |
C7—C1'—C6'—O4 | 7.8 (3) | O1—C2—C3—C4 | −156.59 (18) |
C2—C1—C6—O3 | 169.67 (17) | C1—C2—C3—C4 | 25.9 (3) |
C7—C1—C6—O3 | −8.6 (3) | O3—C6—C5—C4 | 161.36 (17) |
C6—C1—C2—O1 | −171.40 (17) | O4—C6'—C5'—C4' | −157.6 (2) |
C7—C1—C2—O1 | 6.9 (3) | O2—C2'—C3'—C4' | 159.6 (2) |
C6'—C1'—C2'—O2 | 170.75 (18) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3B···O1i | 0.97 | 2.57 | 3.522 (3) | 168 |
C5—H5A···O1ii | 0.97 | 2.56 | 3.371 (3) | 141 |
C5'—H5'1···O2iii | 0.97 | 2.65 | 3.525 (3) | 150 |
C5'—H5'2···O2iv | 0.97 | 2.71 | 3.477 (3) | 136 |
O2—H2···O1 | 0.82 | 1.78 | 2.581 (2) | 165 |
O3—H3···O4 | 0.82 | 1.84 | 2.649 (2) | 171 |
Symmetry codes: (i) −x, −y+1, −z; (ii) x−1/2, −y+1/2, −z; (iii) −x+1/2, y−1/2, z; (iv) −x, y−1/2, −z+1/2. |
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The bond lengths and angles of the two cyclohexene rings in the title compound, (I), conform to expectations (Peter et al., 1992; Lalancette et al., 1997; Govindasamy & Subramanian, 1997).
Rings 1 (C1–C6) and 2 (C1'–C6') have a sofa conformation. The asymmetry parameters [ΔCs(C1) = 0.026 (1) and ΔCs(C1') = 0.017 (1); Nardelli, 1995] satisfy the condition for the sofa conformation. The values of the total puckering amplitudes [QT = 0.476 (2) and 0.477 (3) Å for rings 1 and 2, respectively; Cremer & Pople, 1975] indicate that the two rings have the same conformation. Atoms O2 and O4 deviate from the ring 2 by 0.134 (2) and 0.062 (2) Å, respectively. Atoms O1 and O3 deviate from the ring 1 by 0.097 (2) and 0.066 (2) Å, respectively. Atom C7 deviates from rings 1 and 2 by −0.460 (2) and −0.394 (2) Å, respectively. The deviations of atoms C4 and C4' are −0.295 (2) and −0.364 (3) Å with respect to rings 1 and 2.
The two cyclohexene rings are attracted towards each other by O—H···O intramolecular hydrogen bonds. Atoms O2 and O3 act as donors whereas O4 and O1 act as acceptors. The O···O distance agrees well with earlier reported values (Li et al., 1999; Steiner, 1997; Paixao et al., 1999; Komen et al., 1999; Parvez et al., 1999). The average O···O distance observed in the present structure is 2.615 Å. The sequences of the bond distances along the systems: O1—C2—C1—C6—O3 and O4—C6'—C1'—C2'—O2 are indicative of some π conjugation, enhancing the polarization of charge that produces the two O—H···O hydrogen bonds. These are rather strong as indicated by the short values (1.78 and 1.84 Å) of the H···O distances. The angle C1—C7—C1' is 117.0 (2)°. The conformation of the two halves of the molecule is determined by the two O—H···O hydrogen bonds.
The packing is stabilized by intermolecular C—H···O interactions. The atoms C5 and C5' act as donors to form intermolecular interactions with the symmetry-related atoms O1 and O2.