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In the title compound, C
16H
26N
2O
3S
3, adjacent molecules are arranged in a head-to-tail manner and linked
via weak C—H
S interactions, forming helical chains parallel to the
a axis. These chains are connected
via C—H
O interactions.
Supporting information
CCDC reference: 296620
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.002 Å
- R factor = 0.025
- wR factor = 0.062
- Data-to-parameter ratio = 24.1
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.60 Ratio
PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.07 Ratio
PLAT480_ALERT_4_C Long H...A H-Bond Reported H3A .. S14 .. 2.95 Ang.
Alert level G
REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
From the CIF: _diffrn_reflns_theta_max 30.00
From the CIF: _reflns_number_total 5320
Count of symmetry unique reflns 3067
Completeness (_total/calc) 173.46%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 2253
Fraction of Friedel pairs measured 0.735
Are heavy atom types Z>Si present yes
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
3 ALERT level C = Check and explain
1 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
2 ALERT type 4 Improvement, methodology, query or suggestion
Compound (I) was synthesized from bornane-10,2-sultam and methyl 3-{[bis(methyltio)methylene]amino}propionate, according to the procedure given by Oppolzer et al. (1989). Such obtained compound can be, after enolatization by treatment with either n-butyllithium or lithium diisopropylamide at 195 K, alkylated by selected alkyl halides yielding precursors of β2-amino acids (superscript 2 denotes the position of the introduced group α with reference to the carboxyl group). Crystals of (I) suitable for X-ray study were grown from an ethanol solution by slow evaporation at room temperature (m.p. 363–364 K).
All H atoms were positioned geometry and refined as riding atoms, with C—H distances of 0.98–1.00 Å, and with Uiso(H) values of 1.5Ueq(C) for methyl H atoms) or 1.2Ueq (for the remaining H atoms). The absolute configuration determined based on the Flack (1983) parameter is consistent with that of bornane-10,2-sultam (Oppolzer, 1990; Kiegiel & Jurczak, 1999).
Data collection: KM-4 CCD Software (Oxford Diffraction, 2003); cell refinement: KM-4 CCD Software; data reduction: KM-4 CCD Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003).
(2
R)-
N-{3-[Bis(methylsulfanyl)methylene]aminopropionoyl}bornane-10,2-sultam
top
Crystal data top
C16H26N2O3S3 | F(000) = 832 |
Mr = 390.57 | Dx = 1.398 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 16987 reflections |
a = 7.742 (2) Å | θ = 3–30° |
b = 12.348 (3) Å | µ = 0.42 mm−1 |
c = 19.405 (3) Å | T = 100 K |
V = 1855.1 (7) Å3 | Prism, colourless |
Z = 4 | 0.5 × 0.4 × 0.3 mm |
Data collection top
Kuma KM-4 CCD diffractometer | 5197 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.035 |
Graphite monochromator | θmax = 30.0°, θmin = 3.5° |
ω scans | h = −10→10 |
23438 measured reflections | k = −17→17 |
5320 independent reflections | l = −27→25 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.025 | H-atom parameters constrained |
wR(F2) = 0.062 | w = 1/[σ2(Fo2) + (0.0336P)2 + 0.344P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max = 0.007 |
5320 reflections | Δρmax = 0.34 e Å−3 |
221 parameters | Δρmin = −0.28 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 2253 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.02 (4) |
Crystal data top
C16H26N2O3S3 | V = 1855.1 (7) Å3 |
Mr = 390.57 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 7.742 (2) Å | µ = 0.42 mm−1 |
b = 12.348 (3) Å | T = 100 K |
c = 19.405 (3) Å | 0.5 × 0.4 × 0.3 mm |
Data collection top
Kuma KM-4 CCD diffractometer | 5197 reflections with I > 2σ(I) |
23438 measured reflections | Rint = 0.035 |
5320 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.025 | H-atom parameters constrained |
wR(F2) = 0.062 | Δρmax = 0.34 e Å−3 |
S = 1.08 | Δρmin = −0.28 e Å−3 |
5320 reflections | Absolute structure: Flack (1983), 2253 Friedel pairs |
221 parameters | Absolute structure parameter: 0.02 (4) |
0 restraints | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.51915 (13) | 0.67071 (9) | 0.88913 (6) | 0.01110 (19) | |
C2 | 0.49885 (16) | 0.55731 (9) | 0.92132 (6) | 0.0151 (2) | |
H2A | 0.3757 | 0.5393 | 0.9290 | 0.018* | |
H2B | 0.5618 | 0.5519 | 0.9656 | 0.018* | |
C3 | 0.58097 (17) | 0.48228 (10) | 0.86535 (6) | 0.0171 (2) | |
H3A | 0.6854 | 0.4455 | 0.8832 | 0.021* | |
H3B | 0.4974 | 0.4270 | 0.8494 | 0.021* | |
C4 | 0.62729 (16) | 0.56221 (10) | 0.80667 (6) | 0.0153 (2) | |
H4A | 0.6390 | 0.5275 | 0.7603 | 0.018* | |
C5 | 0.78750 (15) | 0.62777 (10) | 0.82945 (6) | 0.0150 (2) | |
H5A | 0.8289 | 0.6758 | 0.7921 | 0.018* | |
H5B | 0.8828 | 0.5794 | 0.8440 | 0.018* | |
C6 | 0.71568 (14) | 0.69419 (9) | 0.89122 (6) | 0.0116 (2) | |
H6A | 0.7661 | 0.6668 | 0.9354 | 0.014* | |
N7 | 0.73476 (12) | 0.81367 (8) | 0.88720 (5) | 0.01266 (18) | |
C8 | 0.89772 (14) | 0.86113 (9) | 0.88450 (6) | 0.0124 (2) | |
C9 | 0.90309 (14) | 0.98358 (9) | 0.88196 (6) | 0.0147 (2) | |
H9A | 0.8628 | 1.0127 | 0.9267 | 0.018* | |
H9B | 0.8226 | 1.0093 | 0.8458 | 0.018* | |
C10 | 1.08343 (16) | 1.02783 (10) | 0.86693 (7) | 0.0164 (2) | |
H10A | 1.1596 | 1.0163 | 0.9072 | 0.020* | |
H10B | 1.1342 | 0.9896 | 0.8269 | 0.020* | |
N11 | 1.06878 (14) | 1.14448 (8) | 0.85198 (5) | 0.01622 (19) | |
C12 | 1.08624 (15) | 1.21226 (10) | 0.90071 (6) | 0.0149 (2) | |
S13 | 1.06005 (4) | 1.35316 (2) | 0.886320 (15) | 0.01729 (6) | |
S14 | 1.13436 (5) | 1.17486 (3) | 0.987090 (17) | 0.02570 (8) | |
C15 | 1.00471 (19) | 1.35206 (11) | 0.79608 (7) | 0.0211 (2) | |
H15A | 0.9723 | 1.4253 | 0.7815 | 0.032* | |
H15B | 0.9073 | 1.3028 | 0.7885 | 0.032* | |
H15C | 1.1044 | 1.3275 | 0.7691 | 0.032* | |
C16 | 1.1389 (2) | 1.30060 (12) | 1.03450 (8) | 0.0289 (3) | |
H16A | 1.1732 | 1.2864 | 1.0823 | 0.043* | |
H16B | 1.0238 | 1.3336 | 1.0338 | 0.043* | |
H16C | 1.2222 | 1.3501 | 1.0131 | 0.043* | |
C17 | 0.48111 (15) | 0.64785 (10) | 0.81113 (6) | 0.0146 (2) | |
C18 | 0.29864 (17) | 0.60251 (12) | 0.79903 (7) | 0.0236 (3) | |
H18A | 0.2821 | 0.5885 | 0.7498 | 0.035* | |
H18B | 0.2128 | 0.6553 | 0.8148 | 0.035* | |
H18C | 0.2847 | 0.5349 | 0.8248 | 0.035* | |
C19 | 0.50311 (19) | 0.74367 (11) | 0.76128 (7) | 0.0214 (3) | |
H19A | 0.4999 | 0.7172 | 0.7137 | 0.032* | |
H19B | 0.6142 | 0.7792 | 0.7700 | 0.032* | |
H19C | 0.4092 | 0.7957 | 0.7684 | 0.032* | |
C20 | 0.42524 (15) | 0.76273 (9) | 0.92518 (6) | 0.0158 (2) | |
H20A | 0.4059 | 0.7446 | 0.9743 | 0.019* | |
H20B | 0.3118 | 0.7757 | 0.9031 | 0.019* | |
S21 | 0.55856 (4) | 0.88043 (2) | 0.917945 (16) | 0.01488 (6) | |
O22 | 0.49880 (12) | 0.95521 (8) | 0.86658 (6) | 0.0250 (2) | |
O23 | 0.59643 (13) | 0.92319 (8) | 0.98528 (5) | 0.0258 (2) | |
O24 | 1.02565 (11) | 0.80390 (7) | 0.88246 (5) | 0.01985 (19) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0087 (4) | 0.0125 (5) | 0.0121 (4) | −0.0013 (4) | 0.0005 (3) | −0.0006 (4) |
C2 | 0.0164 (5) | 0.0139 (5) | 0.0150 (5) | −0.0007 (4) | 0.0034 (4) | 0.0007 (4) |
C3 | 0.0187 (6) | 0.0128 (5) | 0.0199 (5) | −0.0027 (4) | 0.0044 (4) | −0.0015 (4) |
C4 | 0.0164 (5) | 0.0158 (5) | 0.0136 (5) | −0.0035 (4) | 0.0027 (4) | −0.0037 (4) |
C5 | 0.0119 (5) | 0.0144 (5) | 0.0187 (5) | −0.0011 (4) | 0.0037 (4) | −0.0034 (4) |
C6 | 0.0094 (4) | 0.0108 (5) | 0.0146 (5) | −0.0009 (4) | −0.0013 (4) | −0.0010 (4) |
N7 | 0.0082 (4) | 0.0104 (4) | 0.0194 (4) | 0.0005 (3) | 0.0000 (3) | −0.0015 (4) |
C8 | 0.0106 (4) | 0.0128 (5) | 0.0139 (5) | −0.0014 (4) | −0.0019 (4) | −0.0012 (4) |
C9 | 0.0119 (5) | 0.0117 (5) | 0.0206 (5) | −0.0003 (4) | −0.0002 (4) | 0.0004 (4) |
C10 | 0.0142 (5) | 0.0129 (5) | 0.0223 (6) | −0.0022 (4) | 0.0026 (4) | −0.0036 (4) |
N11 | 0.0159 (5) | 0.0142 (4) | 0.0186 (4) | −0.0022 (4) | 0.0013 (4) | −0.0006 (4) |
C12 | 0.0143 (5) | 0.0128 (5) | 0.0176 (5) | −0.0031 (4) | −0.0007 (4) | 0.0026 (4) |
S13 | 0.02205 (14) | 0.01235 (12) | 0.01746 (13) | −0.00150 (11) | −0.00094 (11) | −0.00015 (10) |
S14 | 0.0432 (2) | 0.01505 (14) | 0.01882 (14) | −0.00273 (14) | −0.01004 (14) | 0.00058 (12) |
C15 | 0.0271 (6) | 0.0195 (6) | 0.0167 (5) | 0.0039 (5) | −0.0012 (5) | 0.0008 (5) |
C16 | 0.0426 (9) | 0.0218 (6) | 0.0224 (6) | −0.0012 (6) | −0.0109 (6) | −0.0064 (5) |
C17 | 0.0139 (5) | 0.0169 (5) | 0.0130 (5) | −0.0031 (4) | −0.0017 (4) | −0.0013 (4) |
C18 | 0.0179 (6) | 0.0284 (7) | 0.0246 (6) | −0.0071 (5) | −0.0075 (5) | −0.0024 (6) |
C19 | 0.0238 (6) | 0.0245 (6) | 0.0157 (5) | −0.0036 (5) | −0.0054 (5) | 0.0054 (5) |
C20 | 0.0115 (5) | 0.0138 (5) | 0.0219 (5) | −0.0002 (4) | 0.0039 (4) | −0.0024 (4) |
S21 | 0.01014 (11) | 0.01224 (12) | 0.02226 (13) | 0.00152 (10) | 0.00221 (11) | −0.00297 (10) |
O22 | 0.0137 (4) | 0.0186 (4) | 0.0426 (6) | 0.0050 (3) | 0.0010 (4) | 0.0091 (4) |
O23 | 0.0230 (5) | 0.0267 (5) | 0.0277 (5) | −0.0036 (4) | 0.0051 (4) | −0.0155 (4) |
O24 | 0.0108 (4) | 0.0146 (4) | 0.0342 (5) | 0.0014 (3) | −0.0018 (3) | −0.0015 (4) |
Geometric parameters (Å, º) top
C1—C20 | 1.5197 (16) | C10—H10A | 0.9900 |
C1—C2 | 1.5413 (16) | C10—H10B | 0.9900 |
C1—C6 | 1.5495 (15) | N11—C12 | 1.2700 (16) |
C1—C17 | 1.5676 (16) | C12—S13 | 1.7738 (13) |
C2—C3 | 1.5627 (17) | C12—S14 | 1.7780 (13) |
C2—H2A | 0.9900 | S13—C15 | 1.8028 (13) |
C2—H2B | 0.9900 | S14—C16 | 1.8050 (15) |
C3—C4 | 1.5490 (17) | C15—H15A | 0.9800 |
C3—H3A | 0.9900 | C15—H15B | 0.9800 |
C3—H3B | 0.9900 | C15—H15C | 0.9800 |
C4—C5 | 1.5456 (17) | C16—H16A | 0.9800 |
C4—C17 | 1.5513 (18) | C16—H16B | 0.9800 |
C4—H4A | 1.0000 | C16—H16C | 0.9800 |
C5—C6 | 1.5553 (16) | C17—C18 | 1.5376 (17) |
C5—H5A | 0.9900 | C17—C19 | 1.5377 (17) |
C5—H5B | 0.9900 | C18—H18A | 0.9800 |
C6—N7 | 1.4848 (15) | C18—H18B | 0.9800 |
C6—H6A | 1.0000 | C18—H18C | 0.9800 |
N7—C8 | 1.3921 (14) | C19—H19A | 0.9800 |
N7—S21 | 1.7019 (10) | C19—H19B | 0.9800 |
C8—O24 | 1.2173 (14) | C19—H19C | 0.9800 |
C8—C9 | 1.5134 (16) | C20—S21 | 1.7880 (12) |
C9—C10 | 1.5273 (16) | C20—H20A | 0.9900 |
C9—H9A | 0.9900 | C20—H20B | 0.9900 |
C9—H9B | 0.9900 | S21—O22 | 1.4353 (11) |
C10—N11 | 1.4737 (16) | S21—O23 | 1.4395 (10) |
| | | |
C20—C1—C2 | 116.35 (9) | N11—C10—H10B | 110.0 |
C20—C1—C6 | 108.53 (9) | C9—C10—H10B | 110.0 |
C2—C1—C6 | 105.04 (9) | H10A—C10—H10B | 108.4 |
C20—C1—C17 | 119.29 (10) | C12—N11—C10 | 119.31 (11) |
C2—C1—C17 | 102.04 (9) | N11—C12—S13 | 121.13 (9) |
C6—C1—C17 | 104.10 (9) | N11—C12—S14 | 123.58 (10) |
C1—C2—C3 | 102.44 (9) | S13—C12—S14 | 115.28 (7) |
C1—C2—H2A | 111.3 | C12—S13—C15 | 99.94 (6) |
C3—C2—H2A | 111.3 | C12—S14—C16 | 105.14 (7) |
C1—C2—H2B | 111.3 | S13—C15—H15A | 109.5 |
C3—C2—H2B | 111.3 | S13—C15—H15B | 109.5 |
H2A—C2—H2B | 109.2 | H15A—C15—H15B | 109.5 |
C4—C3—C2 | 103.14 (10) | S13—C15—H15C | 109.5 |
C4—C3—H3A | 111.1 | H15A—C15—H15C | 109.5 |
C2—C3—H3A | 111.1 | H15B—C15—H15C | 109.5 |
C4—C3—H3B | 111.1 | S14—C16—H16A | 109.5 |
C2—C3—H3B | 111.1 | S14—C16—H16B | 109.5 |
H3A—C3—H3B | 109.1 | H16A—C16—H16B | 109.5 |
C5—C4—C3 | 108.01 (10) | S14—C16—H16C | 109.5 |
C5—C4—C17 | 102.27 (9) | H16A—C16—H16C | 109.5 |
C3—C4—C17 | 102.97 (10) | H16B—C16—H16C | 109.5 |
C5—C4—H4A | 114.1 | C18—C17—C19 | 106.61 (10) |
C3—C4—H4A | 114.1 | C18—C17—C4 | 114.43 (11) |
C17—C4—H4A | 114.1 | C19—C17—C4 | 114.12 (10) |
C4—C5—C6 | 102.11 (9) | C18—C17—C1 | 112.68 (10) |
C4—C5—H5A | 111.3 | C19—C17—C1 | 116.61 (10) |
C6—C5—H5A | 111.3 | C4—C17—C1 | 92.26 (9) |
C4—C5—H5B | 111.3 | C17—C18—H18A | 109.5 |
C6—C5—H5B | 111.3 | C17—C18—H18B | 109.5 |
H5A—C5—H5B | 109.2 | H18A—C18—H18B | 109.5 |
N7—C6—C1 | 106.39 (9) | C17—C18—H18C | 109.5 |
N7—C6—C5 | 116.61 (10) | H18A—C18—H18C | 109.5 |
C1—C6—C5 | 103.42 (9) | H18B—C18—H18C | 109.5 |
N7—C6—H6A | 110.0 | C17—C19—H19A | 109.5 |
C1—C6—H6A | 110.0 | C17—C19—H19B | 109.5 |
C5—C6—H6A | 110.0 | H19A—C19—H19B | 109.5 |
C8—N7—C6 | 120.69 (9) | C17—C19—H19C | 109.5 |
C8—N7—S21 | 122.39 (8) | H19A—C19—H19C | 109.5 |
C6—N7—S21 | 112.53 (7) | H19B—C19—H19C | 109.5 |
O24—C8—N7 | 119.62 (10) | C1—C20—S21 | 107.18 (8) |
O24—C8—C9 | 123.82 (10) | C1—C20—H20A | 110.3 |
N7—C8—C9 | 116.53 (9) | S21—C20—H20A | 110.3 |
C8—C9—C10 | 112.87 (10) | C1—C20—H20B | 110.3 |
C8—C9—H9A | 109.0 | S21—C20—H20B | 110.3 |
C10—C9—H9A | 109.0 | H20A—C20—H20B | 108.5 |
C8—C9—H9B | 109.0 | O22—S21—O23 | 117.39 (7) |
C10—C9—H9B | 109.0 | O22—S21—N7 | 109.06 (6) |
H9A—C9—H9B | 107.8 | O23—S21—N7 | 109.43 (6) |
N11—C10—C9 | 108.47 (10) | O22—S21—C20 | 113.04 (6) |
N11—C10—H10A | 110.0 | O23—S21—C20 | 110.14 (6) |
C9—C10—H10A | 110.0 | N7—S21—C20 | 95.54 (5) |
| | | |
C20—C1—C2—C3 | 170.21 (10) | S14—C12—S13—C15 | −177.44 (7) |
C6—C1—C2—C3 | −69.77 (11) | N11—C12—S14—C16 | −178.52 (12) |
C17—C1—C2—C3 | 38.61 (11) | S13—C12—S14—C16 | 0.53 (10) |
C1—C2—C3—C4 | −3.28 (12) | C5—C4—C17—C18 | −173.37 (10) |
C2—C3—C4—C5 | 74.14 (12) | C3—C4—C17—C18 | −61.36 (12) |
C2—C3—C4—C17 | −33.57 (12) | C5—C4—C17—C19 | 63.44 (12) |
C3—C4—C5—C6 | −66.00 (12) | C3—C4—C17—C19 | 175.45 (10) |
C17—C4—C5—C6 | 42.20 (11) | C5—C4—C17—C1 | −57.15 (10) |
C20—C1—C6—N7 | −33.23 (12) | C3—C4—C17—C1 | 54.86 (10) |
C2—C1—C6—N7 | −158.32 (9) | C20—C1—C17—C18 | −69.21 (14) |
C17—C1—C6—N7 | 94.81 (10) | C2—C1—C17—C18 | 60.59 (12) |
C20—C1—C6—C5 | −156.61 (9) | C6—C1—C17—C18 | 169.69 (10) |
C2—C1—C6—C5 | 78.30 (11) | C20—C1—C17—C19 | 54.58 (14) |
C17—C1—C6—C5 | −28.57 (11) | C2—C1—C17—C19 | −175.62 (10) |
C4—C5—C6—N7 | −124.19 (10) | C6—C1—C17—C19 | −66.53 (13) |
C4—C5—C6—C1 | −7.82 (11) | C20—C1—C17—C4 | 173.08 (10) |
C1—C6—N7—C8 | −176.83 (10) | C2—C1—C17—C4 | −57.12 (10) |
C5—C6—N7—C8 | −62.12 (14) | C6—C1—C17—C4 | 51.98 (10) |
C1—C6—N7—S21 | 26.16 (11) | C2—C1—C20—S21 | 144.62 (9) |
C5—C6—N7—S21 | 140.87 (8) | C6—C1—C20—S21 | 26.49 (11) |
C6—N7—C8—O24 | 3.16 (17) | C17—C1—C20—S21 | −92.37 (11) |
S21—N7—C8—O24 | 157.87 (10) | C8—N7—S21—O22 | 76.99 (11) |
C6—N7—C8—C9 | −178.79 (10) | C6—N7—S21—O22 | −126.45 (9) |
S21—N7—C8—C9 | −24.08 (15) | C8—N7—S21—O23 | −52.65 (11) |
O24—C8—C9—C10 | 7.66 (17) | C6—N7—S21—O23 | 103.92 (9) |
N7—C8—C9—C10 | −170.31 (10) | C8—N7—S21—C20 | −166.30 (10) |
C8—C9—C10—N11 | 168.95 (10) | C6—N7—S21—C20 | −9.73 (9) |
C9—C10—N11—C12 | 92.48 (13) | C1—C20—S21—O22 | 103.14 (9) |
C10—N11—C12—S13 | −177.08 (9) | C1—C20—S21—O23 | −123.34 (8) |
C10—N11—C12—S14 | 1.92 (16) | C1—C20—S21—N7 | −10.29 (9) |
N11—C12—S13—C15 | 1.64 (12) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3A···S14i | 0.99 | 2.95 | 3.484 (2) | 115 (1) |
C20—H20B···O24ii | 0.99 | 2.28 | 3.242 (2) | 164 (1) |
Symmetry codes: (i) x−1/2, −y+3/2, −z+2; (ii) x−1, y, z. |
Experimental details
Crystal data |
Chemical formula | C16H26N2O3S3 |
Mr | 390.57 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 7.742 (2), 12.348 (3), 19.405 (3) |
V (Å3) | 1855.1 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.42 |
Crystal size (mm) | 0.5 × 0.4 × 0.3 |
|
Data collection |
Diffractometer | Kuma KM-4 CCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 23438, 5320, 5197 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.703 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.025, 0.062, 1.08 |
No. of reflections | 5320 |
No. of parameters | 221 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.34, −0.28 |
Absolute structure | Flack (1983), 2253 Friedel pairs |
Absolute structure parameter | 0.02 (4) |
Selected geometric parameters (Å, º) topN7—C8 | 1.3921 (14) | C12—S14 | 1.7780 (13) |
N7—S21 | 1.7019 (10) | C20—S21 | 1.7880 (12) |
C10—N11 | 1.4737 (16) | S21—O22 | 1.4353 (11) |
N11—C12 | 1.2700 (16) | S21—O23 | 1.4395 (10) |
C12—S13 | 1.7738 (13) | | |
| | | |
C1—C2—C3—C4 | −3.28 (12) | C1—C6—N7—S21 | 26.16 (11) |
C20—C1—C6—N7 | −33.23 (12) | C5—C6—N7—S21 | 140.87 (8) |
C4—C5—C6—C1 | −7.82 (11) | S21—N7—C8—C9 | −24.08 (15) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3A···S14i | 0.99 | 2.95 | 3.484 (2) | 115 (1) |
C20—H20B···O24ii | 0.99 | 2.28 | 3.242 (2) | 164 (1) |
Symmetry codes: (i) x−1/2, −y+3/2, −z+2; (ii) x−1, y, z. |
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β-Amino acids are a key part of many natural products displaying antibiotic, antifungal and cytotoxic properties (Cardillo & Tomasini, 1996), precursors of β-lactam antibiotics (Georg, 1993), and peptidomimetics showing remarkable resistance for enzymatic degradation (Steer et al., 2000). β-Amino acids are also very interesting objects of studies because of their tendency to form highly stable helical structures: 14-helix, 12-helix, 10/12-helix for penta-, hexa- and heptamers, composed of appropriately substituted β-amino acids (Seebach et al., 1998; Cheng et al., 2001). The stability of above structures is higher than those of similar ones formed by α-amino acids.
Even though β-amino acids can be obtained from natural sources and via chemical synthesis (Liu & Sibi, 2002), taking into account their significance and their further applications as peptide mimetics, there is a need for elaboration of new, effective and stereoselective methods of their preparation. One of the possible synthetic ways leading to the above compounds involves synthesis of simple precursor (e.g. β-alanine) attached to a chiral auxiliary group. Among many chiral auxiliaries, bornane-10,2-sultam is one of the most popular and effective groups to create new chiral centres. This group was introduced by Oppolzer et al. (1984), and henceforth has been widely used for synthesis of many compounds (Oppolzer, 1990; Szymańska et al., 2000). We applied the Schiff base obtained from β-alanine and Oppolzer's sultam for the synthesis of some β2-substituted β-amino acids (Woźniak et al., 2005). For this purpose we modified the methodology described by Ponsinet et al. (2000). The precursor was chosen on the basis of the simplicity of its synthesis, the very high asymmetric induction characteristic for the sultam moiety and the high tendency of N-acylsultam derivatives to be crystalline.
In the title compound, (I), bond lengths and angles are typical for substituted bornane-10,2-sultam (Hughes et al., 1999; Raczko et al., 2000; Szymański et al., 2001) (Fig. 1 and Table 1). The cyclohexane ring adopts a fairly regular boat conformation, with ring puckering parameters Q = 0.993 (2) Å, θ = 88.65 (7)° and ϕ = 355.21 (7)° (Cremer & Pople, 1975) and asymmetry parameter ΔCs(C1) = 9.4 (1)° (Duax et al., 1976). Adjacent molecules of (I) are arranged in a head-to-tail manner and linked via weak C—H···S interactions (Table 2), forming helical chains parallel to the a axis (Fig. 2). These chains are connected via C—H···O interactions (Table 2).