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In the title compound [2,4-di­amino-5-(3,4,5-tri­methoxy­benzyl)­pyrimidin-1-ium terephthalate terephthalic acid], 2C14H19N4O3+·C8H4O42−·C8H6O4, the trimethoprim mol­ecule is protonated at one of the pyrimidine N atoms. The terephthalate anion and terephthalic acid mol­ecule are centrosymmetric. The carboxyl­ate groups of the terephthalate anion form double hydrogen bonds of type N—H...O, resulting in a fork-like interaction with the protonated di­amino­pyrimidine rings.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536802021670/ob6198sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536802021670/ob6198Isup2.hkl
Contains datablock I

CCDC reference: 202984

Key indicators

  • Single-crystal X-ray study
  • T = 293 K
  • Mean [sigma](C-C) = 0.002 Å
  • R factor = 0.045
  • wR factor = 0.136
  • Data-to-parameter ratio = 17.1

checkCIF results

No syntax errors found

ADDSYM reports no extra symmetry


Red Alert Alert Level A:
DIFF_019 Alert A _diffrn_standards_number is missing Number of standards used in measurement. DIFF_020 Alert A _diffrn_standards_interval_count and _diffrn_standards_interval_time are missing. Number of measurements between standards or time (min) between standards.
Amber Alert Alert Level B:
REFLT_03 From the CIF: _diffrn_reflns_theta_max 32.41 From the CIF: _reflns_number_total 6741 TEST2: Reflns within _diffrn_reflns_theta_max Count of symmetry unique reflns 7602 Completeness (_total/calc) 88.67% Alert B: < 90% complete (theta max?)
Yellow Alert Alert Level C:
PLAT_420 Alert C D-H Without Acceptor N(2) - H(2B) ?
2 Alert Level A = Potentially serious problem
1 Alert Level B = Potential problem
1 Alert Level C = Please check

Computing details top

Data collection: SMART (Bruker, 1997); cell refinement: SMART; data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 1997) and ORTEPII (Johnson, 1976); software used to prepare material for publication: PLATON.

2,4-diamino-5-(3,4,5-trimethoxybenzyl)pyrimidin-1-ium terephthalate terephthalic acid top
Crystal data top
2C14H19N4O3+·C8H4O42·C8H6O4Z = 1
Mr = 912.90F(000) = 480
Triclinic, P1Dx = 1.430 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71069 Å
a = 8.438 (2) ÅCell parameters from 1010 reflections
b = 10.760 (3) Åθ = 1.6–32.0°
c = 12.538 (3) ŵ = 0.11 mm1
α = 90.26 (3)°T = 293 K
β = 98.22 (2)°Plate, colourless
γ = 109.54 (3)°0.22 × 0.22 × 0.14 mm
V = 1060.1 (5) Å3
Data collection top
Bruker SMART
diffractometer
4992 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.019
Graphite monochromatorθmax = 32.4°, θmin = 1.6°
ω scansh = 1212
16182 measured reflectionsk = 1515
6741 independent reflectionsl = 1818
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: located from difmap
wR(F2) = 0.136All H-atom parameters refined
S = 1.04 w = 1/[σ2(Fo2) + (0.084P)2]
where P = (Fo2 + 2Fc2)/3
6741 reflections(Δ/σ)max < 0.001
395 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = 0.24 e Å3
0 constraints
Special details top

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All e.s.d.'s are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles

Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O11.00440 (13)0.79830 (10)0.18758 (6)0.0507 (3)
O20.74369 (12)0.88198 (9)0.17815 (7)0.0490 (3)
O30.63677 (12)0.90440 (10)0.01253 (7)0.0490 (3)
N10.88613 (12)0.58973 (9)0.41553 (7)0.0346 (3)
N20.80617 (19)0.64306 (12)0.57152 (11)0.0585 (4)
N30.93818 (13)0.81242 (9)0.46848 (7)0.0363 (3)
N41.06430 (15)0.97817 (9)0.36357 (8)0.0400 (3)
C1'1.01150 (14)0.80973 (10)0.10758 (8)0.0299 (3)
C20.87713 (15)0.68364 (11)0.48445 (9)0.0359 (3)
C2'1.05884 (15)0.79090 (11)0.00852 (8)0.0337 (3)
C3'0.96597 (15)0.81236 (11)0.08673 (8)0.0360 (3)
C41.01079 (14)0.84885 (10)0.37984 (8)0.0303 (3)
C4'0.82701 (15)0.85270 (11)0.08314 (8)0.0367 (3)
C51.03176 (13)0.75525 (10)0.30621 (7)0.0289 (3)
C5'0.77713 (14)0.86766 (11)0.01569 (9)0.0349 (3)
C60.96769 (14)0.62701 (10)0.32926 (8)0.0329 (3)
C6'0.86970 (14)0.84624 (11)0.11112 (8)0.0330 (3)
C71.12145 (14)0.79363 (11)0.21017 (8)0.0331 (3)
C81.1259 (2)0.73478 (18)0.19545 (13)0.0597 (5)
C90.5900 (2)0.78103 (17)0.22205 (13)0.0564 (5)
C100.5755 (2)0.91176 (17)0.11107 (13)0.0538 (5)
O60.23344 (14)0.52107 (11)0.20026 (9)0.0623 (4)
O70.50441 (14)0.61545 (12)0.27364 (9)0.0615 (3)
C150.44560 (15)0.52733 (11)0.09379 (10)0.0380 (3)
C160.33209 (17)0.49069 (13)0.00236 (11)0.0438 (4)
C170.61367 (16)0.53640 (13)0.09574 (11)0.0440 (3)
C180.38252 (17)0.55372 (11)0.19391 (11)0.0430 (4)
O40.37808 (14)0.63900 (8)0.44246 (8)0.0528 (3)
O50.24182 (12)0.67291 (8)0.57057 (7)0.0422 (3)
C110.42420 (13)0.86223 (9)0.50146 (8)0.0296 (3)
C120.37825 (15)0.94741 (11)0.56479 (9)0.0363 (3)
C130.54704 (15)0.91618 (11)0.43632 (9)0.0367 (3)
C140.34234 (14)0.71427 (10)0.50504 (8)0.0311 (3)
H10.835 (2)0.4948 (17)0.4289 (13)0.061 (5)*
H60.9727 (16)0.5556 (13)0.2855 (11)0.034 (3)*
H21.1545 (18)0.7642 (14)0.0086 (11)0.041 (3)*
H2A0.747 (2)0.5557 (19)0.5743 (14)0.063 (5)*
H2B0.809 (2)0.7030 (19)0.6193 (15)0.066 (5)*
H4A1.108 (2)1.0058 (16)0.3073 (14)0.052 (4)*
H4B1.0494 (19)1.0341 (16)0.4098 (13)0.049 (4)*
H6'0.8349 (18)0.8617 (14)0.1816 (12)0.045 (4)*
H7A1.167 (2)0.7250 (16)0.1934 (12)0.052 (4)*
H7B1.224 (2)0.8833 (16)0.2283 (12)0.049 (4)*
H8A1.242 (2)0.7897 (18)0.1523 (15)0.063 (5)*
H8B1.136 (2)0.7296 (18)0.2665 (16)0.069 (5)*
H8C1.085 (2)0.645 (2)0.1632 (15)0.074 (5)*
H9A0.618 (3)0.706 (3)0.2490 (19)0.105 (8)*
H9B0.533 (3)0.810 (2)0.2799 (19)0.091 (6)*
H9C0.514 (3)0.746 (2)0.1731 (17)0.079 (6)*
H10A0.482 (3)0.9395 (19)0.0951 (15)0.072 (5)*
H10B0.543 (2)0.8251 (19)0.1458 (14)0.066 (5)*
H10C0.665 (2)0.9792 (19)0.1656 (15)0.070 (5)*
H70.456 (3)0.627 (2)0.3339 (18)0.084 (6)*
H160.214 (2)0.4824 (17)0.0032 (13)0.061 (5)*
H170.699 (2)0.5659 (17)0.1654 (14)0.057 (4)*
H120.2941 (19)0.9110 (15)0.6108 (12)0.050 (4)*
H130.5841 (19)0.8611 (16)0.3918 (13)0.052 (4)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0658 (6)0.0602 (6)0.0249 (4)0.0167 (5)0.0144 (4)0.0045 (4)
O20.0536 (5)0.0474 (5)0.0341 (4)0.0064 (4)0.0054 (4)0.0164 (4)
O30.0479 (5)0.0623 (6)0.0454 (5)0.0304 (5)0.0053 (4)0.0136 (4)
N10.0435 (5)0.0234 (4)0.0325 (4)0.0064 (4)0.0042 (4)0.0023 (3)
N20.0859 (9)0.0355 (6)0.0567 (7)0.0108 (6)0.0429 (7)0.0092 (5)
N30.0497 (5)0.0264 (4)0.0329 (4)0.0097 (4)0.0149 (4)0.0030 (3)
N40.0632 (7)0.0246 (4)0.0318 (5)0.0109 (4)0.0157 (4)0.0044 (4)
C1'0.0372 (5)0.0281 (4)0.0242 (4)0.0104 (4)0.0053 (4)0.0030 (3)
C20.0422 (6)0.0288 (5)0.0358 (5)0.0087 (4)0.0114 (4)0.0040 (4)
C2'0.0394 (6)0.0359 (5)0.0273 (5)0.0130 (4)0.0088 (4)0.0031 (4)
C3'0.0452 (6)0.0339 (5)0.0240 (4)0.0057 (4)0.0084 (4)0.0038 (4)
C40.0372 (5)0.0263 (4)0.0261 (4)0.0092 (4)0.0042 (4)0.0027 (3)
C4'0.0429 (6)0.0338 (5)0.0265 (5)0.0059 (4)0.0000 (4)0.0094 (4)
C50.0352 (5)0.0291 (4)0.0223 (4)0.0121 (4)0.0011 (4)0.0018 (3)
C5'0.0372 (5)0.0335 (5)0.0337 (5)0.0124 (4)0.0035 (4)0.0074 (4)
C60.0430 (6)0.0278 (5)0.0264 (4)0.0122 (4)0.0002 (4)0.0011 (4)
C6'0.0397 (5)0.0353 (5)0.0262 (4)0.0151 (4)0.0059 (4)0.0036 (4)
C70.0381 (5)0.0382 (5)0.0272 (5)0.0179 (5)0.0060 (4)0.0043 (4)
C80.0701 (10)0.0680 (10)0.0420 (7)0.0178 (8)0.0255 (7)0.0056 (7)
C90.0531 (8)0.0599 (9)0.0433 (7)0.0091 (7)0.0093 (6)0.0067 (7)
C100.0532 (8)0.0615 (9)0.0598 (8)0.0328 (7)0.0175 (7)0.0168 (7)
O60.0544 (6)0.0666 (7)0.0680 (7)0.0153 (5)0.0290 (5)0.0085 (5)
O70.0623 (6)0.0695 (7)0.0452 (5)0.0069 (5)0.0220 (5)0.0099 (5)
C150.0431 (6)0.0291 (5)0.0418 (6)0.0079 (4)0.0170 (5)0.0028 (4)
C160.0382 (6)0.0446 (6)0.0486 (7)0.0107 (5)0.0146 (5)0.0020 (5)
C170.0412 (6)0.0451 (6)0.0418 (6)0.0086 (5)0.0089 (5)0.0006 (5)
C180.0529 (7)0.0306 (5)0.0475 (7)0.0112 (5)0.0218 (6)0.0031 (5)
O40.0794 (7)0.0289 (4)0.0510 (5)0.0093 (4)0.0355 (5)0.0005 (4)
O50.0549 (5)0.0273 (4)0.0410 (4)0.0038 (3)0.0215 (4)0.0022 (3)
C110.0340 (5)0.0246 (4)0.0257 (4)0.0048 (4)0.0029 (4)0.0019 (3)
C120.0414 (6)0.0291 (5)0.0362 (5)0.0053 (4)0.0150 (5)0.0030 (4)
C130.0446 (6)0.0275 (5)0.0375 (5)0.0078 (4)0.0154 (5)0.0008 (4)
C140.0380 (5)0.0265 (4)0.0251 (4)0.0063 (4)0.0040 (4)0.0006 (3)
Geometric parameters (Å, º) top
O1—C3'1.3694 (14)C5—C71.4998 (15)
O1—C81.423 (2)C5—C61.3524 (15)
O2—C4'1.3873 (15)C5'—C6'1.3966 (16)
O2—C91.419 (2)C2'—H20.943 (16)
O3—C5'1.3640 (17)C6—H60.958 (14)
O3—C101.4174 (19)C6'—H6'1.000 (15)
O6—C181.202 (2)C7—H7B1.056 (17)
O7—C181.3196 (18)C7—H7A0.974 (17)
O7—H70.94 (2)C8—H8A1.030 (19)
O4—C141.2601 (15)C8—H8C1.02 (2)
O5—C141.2420 (15)C8—H8B0.91 (2)
N1—C61.3552 (15)C9—H9C0.94 (2)
N1—C21.3549 (15)C9—H9B0.93 (2)
N2—C21.3256 (19)C9—H9A0.98 (3)
N3—C21.3342 (15)C10—H10B1.001 (19)
N3—C41.3425 (15)C10—H10A0.93 (3)
N4—C41.3380 (14)C10—H10C1.023 (19)
N1—H10.992 (17)C15—C181.4929 (19)
N2—H2B0.870 (19)C15—C171.385 (2)
N2—H2A0.909 (19)C15—C161.3925 (19)
N4—H4A0.852 (17)C16—C17i1.380 (2)
N4—H4B0.884 (16)C16—H160.969 (18)
C1'—C6'1.3847 (18)C17—H171.023 (18)
C1'—C2'1.3917 (16)C11—C121.3928 (16)
C1'—C71.5210 (16)C11—C131.3865 (17)
C2'—C3'1.3963 (16)C11—C141.5125 (14)
C3'—C4'1.3859 (19)C12—C13ii1.3913 (16)
C4—C51.4337 (15)C12—H120.961 (16)
C4'—C5'1.3897 (16)C13—H130.965 (17)
C3'—O1—C8116.60 (11)C5—C7—H7A108.3 (9)
C4'—O2—C9114.79 (11)C5—C7—H7B110.1 (8)
C5'—O3—C10117.69 (11)H7A—C7—H7B108.3 (14)
C18—O7—H7109.4 (15)C1'—C7—H7A106.7 (9)
C2—N1—C6119.26 (10)O1—C8—H8A110.2 (10)
C2—N3—C4117.84 (10)O1—C8—H8C108.3 (11)
C6—N1—H1120.5 (10)H8A—C8—H8B109.3 (16)
C2—N1—H1120.2 (10)O1—C8—H8B107.1 (12)
C2—N2—H2A118.4 (11)H8B—C8—H8C113.4 (16)
H2A—N2—H2B123.5 (17)H8A—C8—H8C108.6 (15)
C2—N2—H2B117.7 (12)O2—C9—H9A108.5 (16)
C4—N4—H4A119.9 (11)O2—C9—H9B111.0 (14)
H4A—N4—H4B120.3 (15)H9A—C9—H9B108 (2)
C4—N4—H4B119.7 (11)H9A—C9—H9C106 (2)
C2'—C1'—C6'119.84 (10)O2—C9—H9C115.4 (13)
C2'—C1'—C7118.63 (11)H9B—C9—H9C108 (2)
C6'—C1'—C7121.50 (10)O3—C10—H10B112.3 (10)
N2—C2—N3119.99 (11)O3—C10—H10C111.4 (10)
N1—C2—N3122.78 (11)H10A—C10—H10B110.6 (16)
N1—C2—N2117.22 (11)H10A—C10—H10C108.5 (16)
C1'—C2'—C3'119.90 (12)H10B—C10—H10C107.2 (15)
O1—C3'—C4'115.62 (10)O3—C10—H10A106.7 (12)
C2'—C3'—C4'120.32 (11)C16—C15—C17119.84 (13)
O1—C3'—C2'124.05 (12)C17—C15—C18121.06 (12)
N3—C4—C5122.30 (10)C16—C15—C18119.09 (13)
N4—C4—C5121.20 (10)C15—C16—C17i120.31 (14)
N3—C4—N4116.50 (10)C15—C17—C16i119.86 (13)
O2—C4'—C5'121.08 (12)O6—C18—C15122.35 (13)
C3'—C4'—C5'119.60 (11)O7—C18—C15114.06 (13)
O2—C4'—C3'119.28 (10)O6—C18—O7123.59 (14)
C6—C5—C7120.70 (10)C15—C16—H16119.7 (10)
C4—C5—C7123.50 (10)C17i—C16—H16120.0 (10)
C4—C5—C6115.79 (10)C15—C17—H17120.5 (10)
O3—C5'—C6'123.57 (11)C16i—C17—H17119.6 (10)
O3—C5'—C4'116.23 (11)C12—C11—C13118.53 (10)
C4'—C5'—C6'120.20 (12)C12—C11—C14120.33 (10)
N1—C6—C5121.86 (10)C13—C11—C14121.13 (10)
C1'—C6'—C5'120.08 (10)C11—C12—C13ii121.39 (11)
C1'—C7—C5115.59 (10)C11—C13—C12ii120.08 (11)
C3'—C2'—H2122.2 (8)O4—C14—O5123.07 (10)
C1'—C2'—H2117.9 (8)O4—C14—C11119.36 (10)
N1—C6—H6114.7 (8)O5—C14—C11117.57 (10)
C5—C6—H6123.4 (8)C11—C12—H12119.2 (9)
C1'—C6'—H6'121.0 (9)C13ii—C12—H12119.4 (9)
C5'—C6'—H6'118.9 (9)C11—C13—H13121.5 (10)
C1'—C7—H7B107.5 (8)C12ii—C13—H13118.4 (10)
C8—O1—C3'—C4'169.05 (12)O2—C4'—C5'—C6'175.67 (11)
C8—O1—C3'—C2'12.08 (18)C3'—C4'—C5'—O3178.40 (11)
C9—O2—C4'—C5'81.16 (15)C3'—C4'—C5'—C6'2.03 (17)
C9—O2—C4'—C3'101.14 (14)O2—C4'—C5'—O33.90 (17)
C10—O3—C5'—C6'4.67 (18)C7—C5—C6—N1180.00 (11)
C10—O3—C5'—C4'175.77 (12)C6—C5—C7—C1'94.38 (13)
C6—N1—C2—N2175.64 (13)C4—C5—C6—N11.18 (17)
C2—N1—C6—C54.03 (18)C4—C5—C7—C1'86.89 (13)
C6—N1—C2—N33.39 (19)C4'—C5'—C6'—C1'0.12 (17)
C2—N3—C4—C53.18 (18)O3—C5'—C6'—C1'179.66 (11)
C4—N3—C2—N10.19 (18)C17—C15—C16—C17i0.11 (18)
C2—N3—C4—N4177.24 (12)C18—C15—C17—C16i178.91 (12)
C4—N3—C2—N2179.19 (13)C16—C15—C18—O614.45 (18)
C6'—C1'—C2'—C3'1.74 (17)C16—C15—C18—O7165.56 (12)
C2'—C1'—C7—C5153.81 (10)C17—C15—C18—O6164.36 (13)
C6'—C1'—C7—C528.14 (15)C17—C15—C18—O715.64 (17)
C2'—C1'—C6'—C5'1.76 (17)C18—C15—C16—C17i178.93 (12)
C7—C1'—C2'—C3'176.35 (11)C16—C15—C17—C16i0.1 (2)
C7—C1'—C6'—C5'176.27 (11)C15—C16—C17i—C15i0.11 (19)
C1'—C2'—C3'—C4'0.17 (17)C13—C11—C12—C13ii0.08 (17)
C1'—C2'—C3'—O1178.99 (11)C14—C11—C12—C13ii179.36 (11)
O1—C3'—C4'—O23.22 (16)C12—C11—C13—C12ii0.08 (19)
C2'—C3'—C4'—C5'2.05 (17)C14—C11—C13—C12ii179.35 (11)
C2'—C3'—C4'—O2175.69 (11)C12—C11—C14—O4175.79 (12)
O1—C3'—C4'—C5'179.04 (11)C12—C11—C14—O54.18 (16)
N4—C4—C5—C73.29 (18)C13—C11—C14—O44.79 (17)
N4—C4—C5—C6177.93 (12)C13—C11—C14—O5175.24 (11)
N3—C4—C5—C62.51 (17)C11—C12—C13ii—C11ii0.08 (18)
N3—C4—C5—C7176.27 (11)
Symmetry codes: (i) x+1, y+1, z; (ii) x+1, y+2, z+1.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O5iii0.992 (17)1.702 (17)2.6832 (14)169.3 (15)
N2—H2A···O4iii0.909 (19)2.000 (19)2.9017 (17)171.4 (16)
N4—H4A···O2iv0.852 (17)2.287 (17)3.1260 (17)168.3 (15)
N4—H4B···N3v0.884 (16)2.210 (16)3.0843 (16)169.9 (15)
O7—H7···O40.94 (2)1.62 (2)2.5499 (17)176 (2)
C7—H7A···O6vi0.974 (17)2.439 (17)3.3754 (19)161.2 (13)
C7—H7B···O2iv1.056 (17)2.540 (16)3.3355 (17)131.6 (12)
C8—H8B···O5vii0.91 (2)2.493 (19)3.353 (2)157.7 (16)
C10—H10A···O3viii0.93 (3)2.53 (2)3.336 (2)145.0 (17)
Symmetry codes: (iii) x+1, y+1, z+1; (iv) x+2, y+2, z; (v) x+2, y+2, z+1; (vi) x+1, y, z; (vii) x+1, y, z1; (viii) x+1, y+2, z.
 

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