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The title compound, C
18H
18N
4, lies on an inversion center. The benzimidazolyl moiety is essentially planar. Intermolecular N—H
N hydrogen bonds give rise to an infinite helical chain structure, with the chains stacked by C—H
π and π
π interactions.
Supporting information
CCDC reference: 193772
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.002 Å
- R factor = 0.039
- wR factor = 0.106
- Data-to-parameter ratio = 16.1
checkCIF results
No syntax errors found
ADDSYM reports no extra symmetry
Data collection: SMART (Bruker,1998); cell refinement: SMART; data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1998); software used to prepare material for publication: SHELXTL.
1,4-Bis(2-benzimidazolyl)butane
top
Crystal data top
C18H18N4 | Dx = 1.31 Mg m−3 |
Mr = 290.36 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 4154 reflections |
a = 8.793 (5) Å | θ = 3.3–27.2° |
b = 9.366 (5) Å | µ = 0.08 mm−1 |
c = 17.881 (10) Å | T = 293 K |
V = 1472.6 (14) Å3 | Block, purple |
Z = 4 | 0.5 × 0.3 × 0.27 mm |
F(000) = 616 | |
Data collection top
Bruker SMART CCD diffractometer | 1344 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.019 |
Absorption correction: empirical (using intensity measurements) (Blessing, 1995) | θmax = 27.2°, θmin = 3.3° |
Tmin = 0.897, Tmax = 0.978 | h = −9→11 |
7990 measured reflections | k = −11→11 |
1614 independent reflections | l = −16→22 |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.039 | w = 1/[σ2(Fo2) + (0.045P)2 + 0.5071P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.106 | (Δ/σ)max < 0.001 |
S = 1.05 | Δρmax = 0.15 e Å−3 |
1614 reflections | Δρmin = −0.17 e Å−3 |
100 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. The structure was solved by direct methods and all non-H atoms were refined the
full-matrix least-squares method with anisotropic displacement parameters. The
H atoms were placed in calculated postions and refined using a riding model. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.19151 (12) | 0.43457 (11) | 0.07042 (6) | 0.0369 (3) | |
H1A | 0.241 | 0.3582 | 0.0594 | 0.044* | |
N2 | 0.11986 (12) | 0.66223 (11) | 0.06746 (6) | 0.0366 (3) | |
C1 | 0.08017 (14) | 0.44761 (13) | 0.12406 (7) | 0.0343 (3) | |
C2 | 0.01507 (16) | 0.35052 (14) | 0.17258 (8) | 0.0432 (3) | |
H2B | 0.0466 | 0.2558 | 0.174 | 0.052* | |
C3 | −0.09861 (18) | 0.40031 (17) | 0.21875 (8) | 0.0488 (4) | |
H3A | −0.1444 | 0.338 | 0.2524 | 0.059* | |
C4 | −0.14626 (18) | 0.54169 (16) | 0.21612 (8) | 0.0494 (4) | |
H4A | −0.2244 | 0.5716 | 0.2475 | 0.059* | |
C5 | −0.08006 (16) | 0.63847 (15) | 0.16802 (8) | 0.0436 (3) | |
H5A | −0.112 | 0.7331 | 0.1668 | 0.052* | |
C6 | 0.03555 (14) | 0.59065 (13) | 0.12148 (7) | 0.0342 (3) | |
C7 | 0.20861 (14) | 0.56470 (13) | 0.03810 (7) | 0.0344 (3) | |
C8 | 0.30912 (15) | 0.58992 (15) | −0.02747 (8) | 0.0407 (3) | |
H8A | 0.3451 | 0.6877 | −0.0257 | 0.049* | |
H8B | 0.2492 | 0.5794 | −0.0727 | 0.049* | |
C9 | 0.44584 (15) | 0.49136 (14) | −0.03266 (7) | 0.0391 (3) | |
H9A | 0.5 | 0.5108 | −0.0788 | 0.047* | |
H9B | 0.4108 | 0.3932 | −0.0345 | 0.047* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0358 (6) | 0.0284 (5) | 0.0465 (6) | 0.0034 (4) | 0.0033 (5) | 0.0025 (4) |
N2 | 0.0355 (6) | 0.0303 (5) | 0.0439 (6) | 0.0016 (4) | 0.0019 (5) | 0.0027 (4) |
C1 | 0.0316 (6) | 0.0329 (6) | 0.0384 (7) | −0.0017 (5) | −0.0020 (5) | 0.0006 (5) |
C2 | 0.0463 (8) | 0.0359 (7) | 0.0475 (8) | −0.0037 (6) | −0.0014 (6) | 0.0073 (6) |
C3 | 0.0496 (8) | 0.0532 (8) | 0.0436 (8) | −0.0095 (7) | 0.0053 (6) | 0.0074 (6) |
C4 | 0.0469 (8) | 0.0572 (9) | 0.0441 (8) | −0.0003 (7) | 0.0101 (6) | −0.0031 (7) |
C5 | 0.0444 (8) | 0.0404 (7) | 0.0461 (8) | 0.0047 (6) | 0.0040 (6) | −0.0028 (6) |
C6 | 0.0335 (6) | 0.0325 (6) | 0.0367 (7) | −0.0011 (5) | −0.0020 (5) | 0.0004 (5) |
C7 | 0.0295 (6) | 0.0316 (6) | 0.0420 (7) | −0.0006 (5) | −0.0021 (5) | 0.0039 (5) |
C8 | 0.0369 (7) | 0.0413 (7) | 0.0438 (7) | 0.0011 (6) | 0.0028 (5) | 0.0068 (6) |
C9 | 0.0351 (7) | 0.0396 (7) | 0.0425 (7) | 0.0000 (5) | 0.0051 (5) | −0.0019 (6) |
Geometric parameters (Å, º) top
N1—C1 | 1.3759 (17) | C4—C5 | 1.378 (2) |
N1—C7 | 1.3573 (17) | C4—H4A | 0.93 |
N1—H1A | 0.86 | C5—C6 | 1.3880 (19) |
N2—C7 | 1.3112 (17) | C5—H5A | 0.93 |
N2—C6 | 1.3900 (16) | C7—C8 | 1.4871 (19) |
C1—C6 | 1.3968 (19) | C8—C9 | 1.5185 (19) |
C1—C2 | 1.3811 (18) | C8—H8A | 0.97 |
C2—C3 | 1.378 (2) | C8—H8B | 0.97 |
C2—H2B | 0.93 | C9—C9i | 1.516 (3) |
C3—C4 | 1.390 (2) | C9—H9A | 0.97 |
C3—H3A | 0.93 | C9—H9B | 0.97 |
| | | |
C1—N1—C7 | 107.22 (10) | C5—C6—C1 | 119.70 (12) |
C1—N1—H1A | 126.4 | C5—C6—N2 | 130.66 (12) |
C7—N1—H1A | 126.4 | C1—C6—N2 | 109.62 (11) |
C7—N2—C6 | 105.04 (11) | N2—C7—N1 | 112.90 (12) |
N1—C1—C6 | 105.18 (11) | N2—C7—C8 | 123.96 (12) |
N1—C1—C2 | 132.41 (12) | N1—C7—C8 | 122.98 (11) |
C6—C1—C2 | 122.41 (13) | C7—C8—C9 | 114.96 (11) |
C3—C2—C1 | 117.02 (13) | C7—C8—H8A | 108.5 |
C3—C2—H2B | 121.5 | C9—C8—H8A | 108.5 |
C1—C2—H2B | 121.5 | C7—C8—H8B | 108.5 |
C2—C3—C4 | 121.40 (13) | C9—C8—H8B | 108.5 |
C2—C3—H3A | 119.3 | H8A—C8—H8B | 107.5 |
C4—C3—H3A | 119.3 | C8—C9—C9i | 112.67 (14) |
C5—C4—C3 | 121.36 (14) | C8—C9—H9A | 109.1 |
C5—C4—H4A | 119.3 | C9i—C9—H9A | 109.1 |
C3—C4—H4A | 119.3 | C8—C9—H9B | 109.1 |
C6—C5—C4 | 118.11 (13) | C9i—C9—H9B | 109.1 |
C6—C5—H5A | 120.9 | H9A—C9—H9B | 107.8 |
C4—C5—H5A | 120.9 | | |
| | | |
C7—N1—C1—C6 | −0.54 (14) | N1—C1—C6—N2 | −0.45 (14) |
C7—N1—C1—C2 | 178.69 (14) | C2—C1—C6—N2 | −179.77 (12) |
N1—C1—C2—C3 | −178.50 (14) | C7—N2—C6—C5 | −177.14 (14) |
C6—C1—C2—C3 | 0.6 (2) | C7—N2—C6—C1 | 1.28 (14) |
C1—C2—C3—C4 | 0.5 (2) | C6—N2—C7—N1 | −1.67 (15) |
C2—C3—C4—C5 | −1.0 (2) | C6—N2—C7—C8 | 173.90 (12) |
C3—C4—C5—C6 | 0.5 (2) | C1—N1—C7—N2 | 1.44 (15) |
C4—C5—C6—C1 | 0.6 (2) | C1—N1—C7—C8 | −174.19 (11) |
C4—C5—C6—N2 | 178.86 (13) | N2—C7—C8—C9 | 155.35 (13) |
N1—C1—C6—C5 | 178.17 (12) | N1—C7—C8—C9 | −29.51 (18) |
C2—C1—C6—C5 | −1.2 (2) | C7—C8—C9—C9i | −63.00 (19) |
Symmetry code: (i) −x+1, −y+1, −z. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N2ii | 0.86 | 2.21 | 3.0431 (19) | 163 |
Symmetry code: (ii) −x+1/2, y−1/2, z. |
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