Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270104018852/ob1189sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270104018852/ob1189Isup2.hkl |
CCDC reference: 254949
The potassium salt of the appropriate N,N-disubstituted dithiocarbamic acid (0.002 mol) was dissolved in methanol (25 ml) with constant stirring; 3-(2-Chloroethyl)-6-arylhexahydropyrimidine-2,4-dione (0.002 mol) was added in portions to this solution. The mixture was heated for 3 h under reflux, after which the precipitate was filtered off, the solution concentrated in vacuo, and the precipitate which formed filtered and crystallized from methanol (yield 64%; m.p. 415–416 K). Elemental analysis, calculated: C 49.33, H 4.87, N 10.15, S 15.49%; found: C 49.71, H 5.31, N 10.02, S 14.82%. Spectroscopic analysis: UV (MeOH), λmax (log ε): 201.0 (4.48), 255.0 (3.90), 282.0 (3.94); IR (KBr, ν, cm−1): 3308 (N—H), 1719–1673 (C—O), 1271 (C—S); 1H NMR (DMSO-d6, δ, p.p.m.): 2.10 (t, 2H, –N—CH2), 2.80 (d, 2H, –CH2), 3.30 (t, 2H, –CH2S–), 3.60–4.00 (m, 8H, morpholine), 4.80 (d, 1H, –CH–), 7.20–7.40 (m, 4H, aromatic), 8.40 (s, 1H, –NH).
Atoms O21, C22, C23, N24, C25 and C26 of the morpholine moiety show positional disorder, corresponding to an approximately 180° rotation about the O21···N24 axis. The two components of this disordered ring have the usual chair conformation, with site occupancy factors of 0.5 each. The atoms of the two components are labelled with the suffix A and B, respectively. A total of 12 restraints were used in the refinement. These were associated with ensuring reasonable geometry for the two morpholine rings. The anisotropic displacement parameters of the slightly disordered morpholine O and N atoms were constrained using SHELXL EADP commands. The disordered morpholine C atoms were refined isotropically. All H atoms were positioned geometrically and refined using a riding model, with N—H = 0.86 and C—H = 0.93–0.97 Å, and with Uiso(H) = 1.2Ueq or 1.5Ueq(C,N). Please check added text relating to treatment of H atoms on N.
Data collection: X-AREA (Stoe & Cie, 2002); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: WinGX (Farrugia, 1997) and PARST (Nardelli, 1995).
C17H20ClN3O3S2 | F(000) = 864 |
Mr = 413.93 | Dx = 1.489 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5107 reflections |
a = 10.2010 (12) Å | θ = 2.0–27.5° |
b = 5.0606 (4) Å | µ = 0.46 mm−1 |
c = 36.290 (5) Å | T = 293 K |
β = 99.692 (10)° | Plate, colourless |
V = 1846.6 (4) Å3 | 0.50 × 0.20 × 0.02 mm |
Z = 4 |
Stoe IPDS-2 diffractometer | 1270 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.116 |
Graphite monochromator | θmax = 26.0°, θmin = 2.0° |
Detector resolution: 6.67 pixels mm-1 | h = −12→12 |
ω scans | k = −6→6 |
13939 measured reflections | l = −44→44 |
3610 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0756P)2] where P = (Fo2 + 2Fc2)/3 |
4241 reflections | (Δ/σ)max = 0.003 |
237 parameters | Δρmax = 0.25 e Å−3 |
12 restraints | Δρmin = −0.66 e Å−3 |
C17H20ClN3O3S2 | V = 1846.6 (4) Å3 |
Mr = 413.93 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.2010 (12) Å | µ = 0.46 mm−1 |
b = 5.0606 (4) Å | T = 293 K |
c = 36.290 (5) Å | 0.50 × 0.20 × 0.02 mm |
β = 99.692 (10)° |
Stoe IPDS-2 diffractometer | 1270 reflections with I > 2σ(I) |
13939 measured reflections | Rint = 0.116 |
3610 independent reflections |
R[F2 > 2σ(F2)] = 0.032 | 12 restraints |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.25 e Å−3 |
4241 reflections | Δρmin = −0.66 e Å−3 |
237 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Some 12 restraints were used in the refinement. These were associated with the chair-form morpholine ring which was disordered over two orientations with geometry controlled by the SHELXL commands:- DFIX 1.41 0.01 O21A C22A O21A C26A O21B C22B O21B C26B DFIX 1.50 0.01 C22A C23A C25A C26A C22B C23B C25B C26B DFIX 1.46 0.01 N24A C23A N24A C25A N24B C23B N24B C25B The three DFIX distances were obtained from a survey of 353 morpholine residues in the July 2004 version of the CSD The anisotropic displacement parameters of the slightly disordered morpholine O and N atoms were constrained with the SHELXL commands:- EADP O21A O21B EADP N24A N24B |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cl3 | 0.88009 (6) | 0.90951 (19) | 0.954720 (15) | 0.1002 (3) | |
S1 | 0.70143 (4) | 1.04625 (9) | 0.647237 (11) | 0.05424 (14) | |
S2 | 0.90134 (4) | 0.70364 (9) | 0.617910 (12) | 0.05593 (14) | |
O2 | 0.55995 (9) | 0.5955 (2) | 0.73200 (3) | 0.0436 (2) | |
O4 | 0.95636 (11) | 0.9922 (2) | 0.77300 (3) | 0.0529 (3) | |
N1 | 0.67375 (11) | 0.4770 (2) | 0.78828 (3) | 0.0415 (3) | |
H1 | 0.6202 | 0.3470 | 0.7894 | 0.050* | |
N3 | 0.75303 (10) | 0.8114 (2) | 0.75390 (3) | 0.0326 (2) | |
C2 | 0.65567 (12) | 0.6215 (3) | 0.75687 (3) | 0.0353 (3) | |
C4 | 0.87680 (12) | 0.8260 (2) | 0.77732 (3) | 0.0357 (3) | |
C5 | 0.90031 (12) | 0.6139 (3) | 0.80604 (4) | 0.0379 (3) | |
H5A | 0.9647 | 0.6770 | 0.8269 | 0.046* | |
H5B | 0.9393 | 0.4630 | 0.7954 | 0.046* | |
C6 | 0.77662 (14) | 0.5217 (3) | 0.82082 (4) | 0.0425 (3) | |
H6 | 0.7973 | 0.3510 | 0.8332 | 0.051* | |
C11 | 0.73705 (12) | 0.7097 (3) | 0.84928 (4) | 0.0367 (3) | |
C12 | 0.81392 (13) | 0.7219 (3) | 0.88428 (4) | 0.0478 (3) | |
H12 | 0.8875 | 0.6119 | 0.8902 | 0.057* | |
C13 | 0.78205 (14) | 0.8973 (4) | 0.91069 (4) | 0.0532 (4) | |
C14 | 0.67551 (17) | 1.0636 (4) | 0.90310 (5) | 0.0566 (4) | |
H14 | 0.6560 | 1.1825 | 0.9209 | 0.068* | |
C15 | 0.59828 (17) | 1.0500 (3) | 0.86840 (6) | 0.0583 (4) | |
H15 | 0.5249 | 1.1609 | 0.8629 | 0.070* | |
C16 | 0.62646 (14) | 0.8756 (3) | 0.84134 (4) | 0.0473 (3) | |
H16 | 0.5721 | 0.8691 | 0.8181 | 0.057* | |
C27 | 0.77716 (15) | 0.9175 (3) | 0.61088 (4) | 0.0464 (3) | |
C28 | 0.75912 (14) | 0.8381 (3) | 0.68641 (4) | 0.0413 (3) | |
H28A | 0.7128 | 0.6700 | 0.6838 | 0.050* | |
H28B | 0.8537 | 0.8053 | 0.6884 | 0.050* | |
C29 | 0.73048 (15) | 0.9845 (3) | 0.72098 (4) | 0.0426 (3) | |
H29A | 0.7878 | 1.1381 | 0.7255 | 0.051* | |
H29B | 0.6390 | 1.0452 | 0.7167 | 0.051* | |
O21A | 0.6463 (10) | 1.292 (2) | 0.5115 (3) | 0.078 (2) | 0.50 |
N24A | 0.7161 (17) | 0.993 (5) | 0.5768 (3) | 0.061 (3) | 0.50 |
C22A | 0.6017 (3) | 1.3522 (6) | 0.54540 (9) | 0.0492 (6)* | 0.50 |
H22A | 0.6653 | 1.4686 | 0.5603 | 0.059* | 0.50 |
H22B | 0.5172 | 1.4438 | 0.5400 | 0.059* | 0.50 |
C23A | 0.5871 (3) | 1.1218 (6) | 0.56569 (9) | 0.0498 (6)* | 0.50 |
H23A | 0.5264 | 1.0019 | 0.5505 | 0.060* | 0.50 |
H23B | 0.5496 | 1.1656 | 0.5878 | 0.060* | 0.50 |
C25A | 0.7616 (4) | 0.9482 (6) | 0.54117 (10) | 0.0481 (7)* | 0.50 |
H25A | 0.8469 | 0.8586 | 0.5458 | 0.058* | 0.50 |
H25B | 0.6988 | 0.8337 | 0.5257 | 0.058* | 0.50 |
C26A | 0.7744 (3) | 1.1789 (6) | 0.52222 (9) | 0.0489 (6)* | 0.50 |
H26A | 0.8141 | 1.1432 | 0.5002 | 0.059* | 0.50 |
H26B | 0.8317 | 1.3008 | 0.5381 | 0.059* | 0.50 |
O21B | 0.6208 (10) | 1.238 (2) | 0.5072 (3) | 0.078 (2) | 0.50 |
N24B | 0.7310 (17) | 1.039 (5) | 0.5777 (3) | 0.061 (3) | 0.50 |
C22B | 0.5417 (3) | 1.2155 (6) | 0.53547 (8) | 0.0485 (6)* | 0.50 |
H22C | 0.4984 | 1.0442 | 0.5339 | 0.058* | 0.50 |
H22D | 0.4733 | 1.3508 | 0.5321 | 0.058* | 0.50 |
C23B | 0.6305 (3) | 1.2476 (7) | 0.57405 (9) | 0.0495 (6)* | 0.50 |
H23C | 0.6727 | 1.4199 | 0.5759 | 0.059* | 0.50 |
H23D | 0.5774 | 1.2321 | 0.5938 | 0.059* | 0.50 |
C25B | 0.8085 (3) | 1.0127 (7) | 0.54752 (9) | 0.0469 (7)* | 0.50 |
H25C | 0.8572 | 0.8471 | 0.5499 | 0.056* | 0.50 |
H25D | 0.8719 | 1.1565 | 0.5485 | 0.056* | 0.50 |
C26B | 0.7091 (3) | 1.0196 (6) | 0.50967 (9) | 0.0481 (6)* | 0.50 |
H26C | 0.7591 | 1.0279 | 0.4892 | 0.058* | 0.50 |
H26D | 0.6578 | 0.8573 | 0.5070 | 0.058* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl3 | 0.0807 (4) | 0.1683 (7) | 0.0473 (3) | 0.0141 (4) | −0.0014 (2) | −0.0300 (3) |
S1 | 0.0624 (3) | 0.0640 (3) | 0.0370 (2) | 0.01415 (17) | 0.01040 (17) | 0.00937 (15) |
S2 | 0.0561 (3) | 0.0635 (3) | 0.0479 (2) | 0.00682 (17) | 0.00789 (18) | −0.00020 (17) |
O2 | 0.0330 (4) | 0.0544 (6) | 0.0406 (5) | −0.0025 (4) | −0.0020 (4) | −0.0039 (4) |
O4 | 0.0451 (5) | 0.0570 (6) | 0.0553 (7) | −0.0166 (5) | 0.0049 (5) | −0.0051 (5) |
N1 | 0.0448 (6) | 0.0415 (6) | 0.0353 (6) | −0.0137 (4) | −0.0013 (5) | 0.0057 (4) |
N3 | 0.0324 (5) | 0.0384 (5) | 0.0266 (5) | −0.0039 (4) | 0.0037 (4) | 0.0007 (4) |
C2 | 0.0346 (6) | 0.0399 (6) | 0.0312 (6) | 0.0038 (4) | 0.0049 (5) | −0.0036 (4) |
C4 | 0.0364 (6) | 0.0389 (6) | 0.0323 (6) | 0.0011 (5) | 0.0069 (5) | −0.0066 (4) |
C5 | 0.0328 (6) | 0.0445 (6) | 0.0351 (6) | 0.0055 (5) | 0.0017 (5) | −0.0049 (5) |
C6 | 0.0428 (7) | 0.0450 (7) | 0.0375 (7) | 0.0046 (5) | 0.0003 (5) | 0.0080 (5) |
C11 | 0.0329 (5) | 0.0444 (6) | 0.0339 (6) | −0.0062 (5) | 0.0084 (5) | 0.0074 (5) |
C12 | 0.0355 (6) | 0.0632 (9) | 0.0453 (8) | 0.0063 (6) | 0.0083 (6) | −0.0048 (6) |
C13 | 0.0398 (7) | 0.0793 (11) | 0.0408 (8) | −0.0024 (7) | 0.0079 (6) | −0.0090 (7) |
C14 | 0.0537 (9) | 0.0636 (9) | 0.0557 (9) | 0.0015 (7) | 0.0186 (7) | −0.0116 (7) |
C15 | 0.0519 (9) | 0.0574 (9) | 0.0675 (11) | 0.0159 (7) | 0.0150 (8) | 0.0025 (7) |
C16 | 0.0389 (7) | 0.0582 (8) | 0.0442 (7) | 0.0058 (6) | 0.0052 (6) | 0.0070 (6) |
C27 | 0.0480 (7) | 0.0549 (8) | 0.0349 (7) | −0.0037 (6) | 0.0029 (6) | 0.0042 (5) |
C28 | 0.0441 (7) | 0.0482 (7) | 0.0324 (6) | −0.0008 (5) | 0.0088 (5) | 0.0015 (5) |
C29 | 0.0487 (7) | 0.0429 (6) | 0.0351 (7) | 0.0021 (5) | 0.0034 (5) | 0.0035 (5) |
O21A | 0.092 (3) | 0.092 (4) | 0.0519 (19) | 0.012 (3) | 0.015 (2) | 0.022 (2) |
N24A | 0.055 (3) | 0.092 (6) | 0.0360 (8) | 0.018 (4) | 0.0103 (13) | 0.0107 (19) |
O21B | 0.092 (3) | 0.092 (4) | 0.0519 (19) | 0.012 (3) | 0.015 (2) | 0.022 (2) |
N24B | 0.055 (3) | 0.092 (6) | 0.0360 (8) | 0.018 (4) | 0.0103 (13) | 0.0107 (19) |
Cl3—C13 | 1.7375 (17) | C28—H28B | 0.97 |
S1—C27 | 1.7621 (16) | C29—H29A | 0.97 |
S1—C28 | 1.7875 (14) | C29—H29B | 0.97 |
S2—C27 | 1.6530 (16) | O21A—C22A | 1.415 (8) |
O2—C2 | 1.2201 (15) | O21A—C26A | 1.420 (8) |
O4—C4 | 1.1974 (17) | N24A—C25A | 1.462 (8) |
N1—C2 | 1.3405 (17) | N24A—C23A | 1.463 (9) |
N1—C6 | 1.4592 (17) | C22A—C23A | 1.401 (4) |
N1—H1 | 0.86 | C22A—H22A | 0.97 |
N3—C2 | 1.3993 (16) | C22A—H22B | 0.97 |
N3—C4 | 1.4003 (15) | C23A—H23A | 0.97 |
N3—C29 | 1.4680 (16) | C23A—H23B | 0.97 |
C4—C5 | 1.4873 (18) | C25A—C26A | 1.372 (4) |
C5—C6 | 1.5249 (19) | C25A—H25A | 0.97 |
C5—H5A | 0.97 | C25A—H25B | 0.97 |
C5—H5B | 0.97 | C26A—H26A | 0.97 |
C6—C11 | 1.5082 (19) | C26A—H26B | 0.97 |
C6—H6 | 0.98 | O21B—C22B | 1.414 (8) |
C11—C12 | 1.3773 (19) | O21B—C26B | 1.419 (8) |
C11—C16 | 1.3968 (19) | N24B—C23B | 1.461 (9) |
C12—C13 | 1.385 (2) | N24B—C25B | 1.461 (8) |
C12—H12 | 0.93 | C22B—C23B | 1.543 (4) |
C13—C14 | 1.365 (2) | C22B—H22C | 0.97 |
C14—C15 | 1.370 (3) | C22B—H22D | 0.97 |
C14—H14 | 0.93 | C23B—H23C | 0.97 |
C15—C16 | 1.386 (2) | C23B—H23D | 0.97 |
C15—H15 | 0.93 | C25B—C26B | 1.565 (4) |
C16—H16 | 0.93 | C25B—H25C | 0.97 |
C27—N24A | 1.344 (11) | C25B—H25D | 0.97 |
C27—N24B | 1.364 (10) | C26B—H26C | 0.97 |
C28—C29 | 1.5271 (19) | C26B—H26D | 0.97 |
C28—H28A | 0.97 | ||
C27—S1—C28 | 104.50 (7) | C28—C29—H29B | 109.5 |
C2—N1—C6 | 125.51 (11) | H29A—C29—H29B | 108.1 |
C2—N1—H1 | 117.2 | C22A—O21A—C26A | 105.2 (7) |
C6—N1—H1 | 117.2 | C27—N24A—C25A | 127.0 (6) |
C2—N3—C4 | 124.65 (10) | C27—N24A—C23A | 129.5 (6) |
C2—N3—C29 | 117.18 (10) | C25A—N24A—C23A | 103.4 (7) |
C4—N3—C29 | 117.66 (10) | C23A—C22A—O21A | 110.9 (5) |
O2—C2—N1 | 123.28 (12) | C23A—C22A—H22A | 109.5 |
O2—C2—N3 | 120.46 (12) | O21A—C22A—H22A | 109.5 |
N1—C2—N3 | 116.26 (11) | C23A—C22A—H22B | 109.5 |
O4—C4—N3 | 121.29 (12) | O21A—C22A—H22B | 109.5 |
O4—C4—C5 | 124.47 (13) | H22A—C22A—H22B | 108.0 |
N3—C4—C5 | 114.19 (11) | C22A—C23A—N24A | 110.1 (9) |
C4—C5—C6 | 114.96 (10) | C22A—C23A—H23A | 109.6 |
C4—C5—H5A | 108.5 | N24A—C23A—H23A | 109.6 |
C6—C5—H5A | 108.5 | C22A—C23A—H23B | 109.6 |
C4—C5—H5B | 108.5 | N24A—C23A—H23B | 109.6 |
C6—C5—H5B | 108.5 | H23A—C23A—H23B | 108.1 |
H5A—C5—H5B | 107.5 | C26A—C25A—N24A | 112.4 (9) |
N1—C6—C11 | 114.39 (11) | C26A—C25A—H25A | 109.1 |
N1—C6—C5 | 106.72 (11) | N24A—C25A—H25A | 109.1 |
C11—C6—C5 | 112.37 (11) | C26A—C25A—H25B | 109.1 |
N1—C6—H6 | 107.7 | N24A—C25A—H25B | 109.1 |
C11—C6—H6 | 107.7 | H25A—C25A—H25B | 107.8 |
C5—C6—H6 | 107.7 | C25A—C26A—O21A | 108.7 (6) |
C12—C11—C16 | 118.54 (13) | C25A—C26A—H26A | 110.0 |
C12—C11—C6 | 118.90 (12) | O21A—C26A—H26A | 110.0 |
C16—C11—C6 | 122.55 (12) | C25A—C26A—H26B | 110.0 |
C11—C12—C13 | 120.23 (14) | O21A—C26A—H26B | 110.0 |
C11—C12—H12 | 119.9 | H26A—C26A—H26B | 108.3 |
C13—C12—H12 | 119.9 | C22B—O21B—C26B | 109.0 (7) |
C14—C13—C12 | 121.81 (15) | C27—N24B—C23B | 122.6 (6) |
C14—C13—Cl3 | 118.62 (13) | C27—N24B—C25B | 118.0 (6) |
C12—C13—Cl3 | 119.56 (13) | C23B—N24B—C25B | 117.3 (8) |
C13—C14—C15 | 118.01 (15) | O21B—C22B—C23B | 109.3 (5) |
C13—C14—H14 | 121.0 | O21B—C22B—H22C | 109.8 |
C15—C14—H14 | 121.0 | C23B—C22B—H22C | 109.8 |
C14—C15—C16 | 121.83 (15) | O21B—C22B—H22D | 109.8 |
C14—C15—H15 | 119.1 | C23B—C22B—H22D | 109.8 |
C16—C15—H15 | 119.1 | H22C—C22B—H22D | 108.3 |
C15—C16—C11 | 119.57 (14) | N24B—C23B—C22B | 107.6 (8) |
C15—C16—H16 | 120.2 | N24B—C23B—H23C | 110.2 |
C11—C16—H16 | 120.2 | C22B—C23B—H23C | 110.2 |
N24A—C27—S2 | 123.6 (4) | N24B—C23B—H23D | 110.2 |
N24B—C27—S2 | 125.0 (3) | C22B—C23B—H23D | 110.2 |
N24A—C27—S1 | 113.0 (3) | H23C—C23B—H23D | 108.5 |
N24B—C27—S1 | 111.3 (4) | N24B—C25B—C26B | 107.7 (7) |
S2—C27—S1 | 123.21 (9) | N24B—C25B—H25C | 110.2 |
C29—C28—S1 | 106.52 (9) | C26B—C25B—H25C | 110.2 |
C29—C28—H28A | 110.4 | N24B—C25B—H25D | 110.2 |
S1—C28—H28A | 110.4 | C26B—C25B—H25D | 110.2 |
C29—C28—H28B | 110.4 | H25C—C25B—H25D | 108.5 |
S1—C28—H28B | 110.4 | O21B—C26B—C25B | 112.6 (5) |
H28A—C28—H28B | 108.6 | O21B—C26B—H26C | 109.1 |
N3—C29—C28 | 110.70 (11) | C25B—C26B—H26C | 109.1 |
N3—C29—H29A | 109.5 | O21B—C26B—H26D | 109.1 |
C28—C29—H29A | 109.5 | C25B—C26B—H26D | 109.1 |
N3—C29—H29B | 109.5 | H26C—C26B—H26D | 107.8 |
C6—N1—C2—O2 | −171.78 (13) | C27—S1—C28—C29 | 163.95 (10) |
C6—N1—C2—N3 | 7.37 (19) | C2—N3—C29—C28 | −76.45 (14) |
C4—N3—C2—O2 | −168.17 (12) | C4—N3—C29—C28 | 95.72 (14) |
C29—N3—C2—O2 | 3.40 (17) | S1—C28—C29—N3 | 170.24 (9) |
C4—N3—C2—N1 | 12.65 (17) | N24B—C27—N24A—C25A | 88 (3) |
C29—N3—C2—N1 | −175.77 (11) | S2—C27—N24A—C25A | −13 (3) |
C2—N3—C4—O4 | 179.20 (12) | S1—C27—N24A—C25A | 172.3 (18) |
C29—N3—C4—O4 | 7.67 (18) | N24B—C27—N24A—C23A | −96 (4) |
C2—N3—C4—C5 | 1.61 (16) | S2—C27—N24A—C23A | 162.4 (16) |
C29—N3—C4—C5 | −169.92 (11) | S1—C27—N24A—C23A | −12 (3) |
O4—C4—C5—C6 | 149.10 (13) | C26A—O21A—C22A—C23A | −63.7 (9) |
N3—C4—C5—C6 | −33.40 (15) | O21A—C22A—C23A—N24A | 64.0 (10) |
C2—N1—C6—C11 | 88.77 (17) | C27—N24A—C23A—C22A | 126 (2) |
C2—N1—C6—C5 | −36.16 (18) | C25A—N24A—C23A—C22A | −57.4 (17) |
C4—C5—C6—N1 | 47.59 (15) | C27—N24A—C25A—C26A | −123 (2) |
C4—C5—C6—C11 | −78.56 (14) | C23A—N24A—C25A—C26A | 60.1 (17) |
N1—C6—C11—C12 | 166.07 (12) | N24A—C25A—C26A—O21A | −66.0 (10) |
C5—C6—C11—C12 | −72.05 (16) | C22A—O21A—C26A—C25A | 63.4 (9) |
N1—C6—C11—C16 | −15.00 (18) | N24A—C27—N24B—C23B | 100 (3) |
C5—C6—C11—C16 | 106.88 (14) | S2—C27—N24B—C23B | −173.3 (12) |
C16—C11—C12—C13 | −0.6 (2) | S1—C27—N24B—C23B | −1 (2) |
C6—C11—C12—C13 | 178.36 (14) | N24A—C27—N24B—C25B | −97 (4) |
C11—C12—C13—C14 | −0.5 (3) | S2—C27—N24B—C25B | −10 (3) |
C11—C12—C13—Cl3 | 179.91 (12) | S1—C27—N24B—C25B | 162.7 (14) |
C12—C13—C14—C15 | 1.0 (3) | C26B—O21B—C22B—C23B | 66.7 (9) |
Cl3—C13—C14—C15 | −179.35 (14) | C27—N24B—C23B—C22B | −144.5 (18) |
C13—C14—C15—C16 | −0.5 (3) | C25B—N24B—C23B—C22B | 52 (2) |
C14—C15—C16—C11 | −0.5 (3) | O21B—C22B—C23B—N24B | −59.7 (11) |
C12—C11—C16—C15 | 1.1 (2) | C27—N24B—C25B—C26B | 148.7 (16) |
C6—C11—C16—C15 | −177.85 (14) | C23B—N24B—C25B—C26B | −47 (2) |
C28—S1—C27—N24A | 160.8 (13) | C22B—O21B—C26B—C25B | −62.8 (9) |
C28—S1—C27—N24B | 173.4 (13) | N24B—C25B—C26B—O21B | 50.6 (11) |
C28—S1—C27—S2 | −13.72 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.86 | 2.26 | 3.0598 (15) | 154 |
C16—H16···O2ii | 0.93 | 2.37 | 3.1991 (18) | 149 |
C5—H5B···O4iii | 0.97 | 2.53 | 3.4483 (18) | 157 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x+1, y+1/2, −z+3/2; (iii) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C17H20ClN3O3S2 |
Mr | 413.93 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 10.2010 (12), 5.0606 (4), 36.290 (5) |
β (°) | 99.692 (10) |
V (Å3) | 1846.6 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.46 |
Crystal size (mm) | 0.50 × 0.20 × 0.02 |
Data collection | |
Diffractometer | Stoe IPDS2 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13939, 3610, 1270 |
Rint | 0.116 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.121, 1.02 |
No. of reflections | 4241 |
No. of parameters | 237 |
No. of restraints | 12 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.25, −0.66 |
Computer programs: X-AREA (Stoe & Cie, 2002), X-AREA, X-RED32 (Stoe & Cie, 2002), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEPIII (Burnett & Johnson, 1996), WinGX (Farrugia, 1997) and PARST (Nardelli, 1995).
S1—C27 | 1.7621 (16) | N1—C6 | 1.4592 (17) |
S1—C28 | 1.7875 (14) | N3—C2 | 1.3993 (16) |
S2—C27 | 1.6530 (16) | N3—C4 | 1.4003 (15) |
O2—C2 | 1.2201 (15) | C4—C5 | 1.4873 (18) |
O4—C4 | 1.1974 (17) | C5—C6 | 1.5249 (19) |
N1—C2 | 1.3405 (17) | ||
S1—C28—C29—N3 | 170.24 (9) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2i | 0.86 | 2.26 | 3.0598 (15) | 154 |
C16—H16···O2ii | 0.93 | 2.37 | 3.1991 (18) | 149 |
C5—H5B···O4iii | 0.97 | 2.53 | 3.4483 (18) | 157 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x+1, y+1/2, −z+3/2; (iii) x, y−1, z. |
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Although there are a number of antiepileptic drugs currently available, the development of more efficient compounds with lower toxicity remains a requirement for improved antiepileptic drug treatments (Brodie, 2001). In the last decade, new anticonvulsant compounds have emerged, with substantially different structures from the classical anticonvulsant drugs, in that they contain the ureido structure (Bialer et al., 2002). For example, 3-substituted-6-arylhexahydropyrimidine-2,4-dione derivatives with a ureido structure have been reported as a new group of compounds which have been found to be active in anticonvulsant therapy (Guillon et al., 1996; Çalış & Köksal, 2001; Septio~glu et al., 2004).
It is well known that pyrimidine derivatives have various pharmacological activities, such as diuretic, antihypertensive, antiinflammatory, antiepileptic and anticancer properties (Skulnick et al., 1986; Guillon et al., 1996; Sanyal et al., 1986). In addition, numerous studies of pyrimidine derivatives have shown that these compounds have potential bacteriostatic, fungicidal and antiviral activities (Skulnick et al., 1986; Özalp et al., 2000).
In our previous studies, we have synthesized some new 3-alkyl-6-arylhexahydropyrimidine-2,4-dione derivatives and investigated their antimicrobial (Özalp et al., 2000) and anticonvulsant activities (Çalış & Köksal, 2001). At the same time, 6-arylhexahydropyrimidine-2,4-dione derivatives with a mercapto group at the 3-position were found to be protective against subcutaneous metrazole (Guillon et al., 1996).
Over the past 30 years, numerous dithiocarbamate derivatives have been synthesized and their pharmacological activities have been reported to be antibacterial, antifungal, antiviral, herbicidal, tubercolostatic and anticholinergic (Gupta & Garg, 1965; Kumar & Reddy, 1985; Chabric et al., 1956; Ramrakhyani & Shukla, 1980; Weuffen & Kewitsch, 1967; Zsolnai, 1968; Çalış et al., 1993).
These previous studies led us to synthesize several derivatives of 6-arylhexahydropyrimidine-2,4-dione with a dithiocarbamate functional group at the 3-position of the hexahydropyrimidine-2,4-dione ring. In this paper, we report the structure of one of these, the title compound, (I). \sch
In the molecule of (I), the four C—N bond distances in the hexahydropyrimidine ring show a rather wide variation [1.3405 (17)–1.4592 (17) Å; Table 1]. These distances are somewhat longer than the mean value of 1.333 Å for pyrimidines in general (Allen et al., 1987). The hexahydropyrimidine ring exhibits a puckered conformation, with puckering parameters (Cremer & Pople, 1975) q2 = 0.4 (1) Å, q3 = 0.2 (1) Å, QT = 0.41 (1) Å, ϕ = −147.42 (6)° and θ = 62.39 (5)°. This hexahydropyrimidine ring is approximately planar, the maximum deviation from the best plane being 0.26 (1) Å for C7, and the dihedral angle with the phenyl group is 86.81 (11)°.
In the crystal structure of (I), the molecules are connected via N—H···O and C—H···O interactions to form infinite spiral chains extending along the b axis (Fig. 2 and Table 2).