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In the title compound, C17H20ClN3O3S2, the hexa­hydro­pyrimidine ring is puckered, the total puckering amplitude QT being 0.41 (1) Å. The morpholine ring displays orientational disorder. Molecules are linked in the crystal via N-H...O and C-H...O interactions to form infinite chains.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270104018852/ob1189sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270104018852/ob1189Isup2.hkl
Contains datablock I

CCDC reference: 254949

Comment top

Although there are a number of antiepileptic drugs currently available, the development of more efficient compounds with lower toxicity remains a requirement for improved antiepileptic drug treatments (Brodie, 2001). In the last decade, new anticonvulsant compounds have emerged, with substantially different structures from the classical anticonvulsant drugs, in that they contain the ureido structure (Bialer et al., 2002). For example, 3-substituted-6-arylhexahydropyrimidine-2,4-dione derivatives with a ureido structure have been reported as a new group of compounds which have been found to be active in anticonvulsant therapy (Guillon et al., 1996; Çalış & Köksal, 2001; Septio~glu et al., 2004).

It is well known that pyrimidine derivatives have various pharmacological activities, such as diuretic, antihypertensive, antiinflammatory, antiepileptic and anticancer properties (Skulnick et al., 1986; Guillon et al., 1996; Sanyal et al., 1986). In addition, numerous studies of pyrimidine derivatives have shown that these compounds have potential bacteriostatic, fungicidal and antiviral activities (Skulnick et al., 1986; Özalp et al., 2000).

In our previous studies, we have synthesized some new 3-alkyl-6-arylhexahydropyrimidine-2,4-dione derivatives and investigated their antimicrobial (Özalp et al., 2000) and anticonvulsant activities (Çalış & Köksal, 2001). At the same time, 6-arylhexahydropyrimidine-2,4-dione derivatives with a mercapto group at the 3-position were found to be protective against subcutaneous metrazole (Guillon et al., 1996).

Over the past 30 years, numerous dithiocarbamate derivatives have been synthesized and their pharmacological activities have been reported to be antibacterial, antifungal, antiviral, herbicidal, tubercolostatic and anticholinergic (Gupta & Garg, 1965; Kumar & Reddy, 1985; Chabric et al., 1956; Ramrakhyani & Shukla, 1980; Weuffen & Kewitsch, 1967; Zsolnai, 1968; Çalış et al., 1993).

These previous studies led us to synthesize several derivatives of 6-arylhexahydropyrimidine-2,4-dione with a dithiocarbamate functional group at the 3-position of the hexahydropyrimidine-2,4-dione ring. In this paper, we report the structure of one of these, the title compound, (I). \sch

In the molecule of (I), the four C—N bond distances in the hexahydropyrimidine ring show a rather wide variation [1.3405 (17)–1.4592 (17) Å; Table 1]. These distances are somewhat longer than the mean value of 1.333 Å for pyrimidines in general (Allen et al., 1987). The hexahydropyrimidine ring exhibits a puckered conformation, with puckering parameters (Cremer & Pople, 1975) q2 = 0.4 (1) Å, q3 = 0.2 (1) Å, QT = 0.41 (1) Å, ϕ = −147.42 (6)° and θ = 62.39 (5)°. This hexahydropyrimidine ring is approximately planar, the maximum deviation from the best plane being 0.26 (1) Å for C7, and the dihedral angle with the phenyl group is 86.81 (11)°.

In the crystal structure of (I), the molecules are connected via N—H···O and C—H···O interactions to form infinite spiral chains extending along the b axis (Fig. 2 and Table 2).

Experimental top

The potassium salt of the appropriate N,N-disubstituted dithiocarbamic acid (0.002 mol) was dissolved in methanol (25 ml) with constant stirring; 3-(2-Chloroethyl)-6-arylhexahydropyrimidine-2,4-dione (0.002 mol) was added in portions to this solution. The mixture was heated for 3 h under reflux, after which the precipitate was filtered off, the solution concentrated in vacuo, and the precipitate which formed filtered and crystallized from methanol (yield 64%; m.p. 415–416 K). Elemental analysis, calculated: C 49.33, H 4.87, N 10.15, S 15.49%; found: C 49.71, H 5.31, N 10.02, S 14.82%. Spectroscopic analysis: UV (MeOH), λmax (log ε): 201.0 (4.48), 255.0 (3.90), 282.0 (3.94); IR (KBr, ν, cm−1): 3308 (N—H), 1719–1673 (C—O), 1271 (C—S); 1H NMR (DMSO-d6, δ, p.p.m.): 2.10 (t, 2H, –N—CH2), 2.80 (d, 2H, –CH2), 3.30 (t, 2H, –CH2S–), 3.60–4.00 (m, 8H, morpholine), 4.80 (d, 1H, –CH–), 7.20–7.40 (m, 4H, aromatic), 8.40 (s, 1H, –NH).

Refinement top

Atoms O21, C22, C23, N24, C25 and C26 of the morpholine moiety show positional disorder, corresponding to an approximately 180° rotation about the O21···N24 axis. The two components of this disordered ring have the usual chair conformation, with site occupancy factors of 0.5 each. The atoms of the two components are labelled with the suffix A and B, respectively. A total of 12 restraints were used in the refinement. These were associated with ensuring reasonable geometry for the two morpholine rings. The anisotropic displacement parameters of the slightly disordered morpholine O and N atoms were constrained using SHELXL EADP commands. The disordered morpholine C atoms were refined isotropically. All H atoms were positioned geometrically and refined using a riding model, with N—H = 0.86 and C—H = 0.93–0.97 Å, and with Uiso(H) = 1.2Ueq or 1.5Ueq(C,N). Please check added text relating to treatment of H atoms on N.

Computing details top

Data collection: X-AREA (Stoe & Cie, 2002); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: WinGX (Farrugia, 1997) and PARST (Nardelli, 1995).

Figures top
[Figure 1] Fig. 1. The molecular structure of (I), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level and H atoms are shown as small spheres of arbitrary radii. For clarity, only the A component of the disordered morpholine ring is shown.
[Figure 2] Fig. 2. A stereoview of part of the crystal structure of (I). Molecules are linked by N—H···O and C—H···O hydrogen bonds to form a spiral chain extending along the b direction (horizontal). As in Fig. 1, only the A component of the disordered morpholine ring is shown.
2-[6-(3-Chlorophenyl)-2,4-dioxoperhydropyrimidin-3-yl]ethyl morpholine-4-carbodithioate top
Crystal data top
C17H20ClN3O3S2F(000) = 864
Mr = 413.93Dx = 1.489 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5107 reflections
a = 10.2010 (12) Åθ = 2.0–27.5°
b = 5.0606 (4) ŵ = 0.46 mm1
c = 36.290 (5) ÅT = 293 K
β = 99.692 (10)°Plate, colourless
V = 1846.6 (4) Å30.50 × 0.20 × 0.02 mm
Z = 4
Data collection top
Stoe IPDS-2
diffractometer
1270 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.116
Graphite monochromatorθmax = 26.0°, θmin = 2.0°
Detector resolution: 6.67 pixels mm-1h = 1212
ω scansk = 66
13939 measured reflectionsl = 4444
3610 independent reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.02 w = 1/[σ2(Fo2) + (0.0756P)2]
where P = (Fo2 + 2Fc2)/3
4241 reflections(Δ/σ)max = 0.003
237 parametersΔρmax = 0.25 e Å3
12 restraintsΔρmin = 0.66 e Å3
Crystal data top
C17H20ClN3O3S2V = 1846.6 (4) Å3
Mr = 413.93Z = 4
Monoclinic, P21/cMo Kα radiation
a = 10.2010 (12) ŵ = 0.46 mm1
b = 5.0606 (4) ÅT = 293 K
c = 36.290 (5) Å0.50 × 0.20 × 0.02 mm
β = 99.692 (10)°
Data collection top
Stoe IPDS-2
diffractometer
1270 reflections with I > 2σ(I)
13939 measured reflectionsRint = 0.116
3610 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.03212 restraints
wR(F2) = 0.121H-atom parameters constrained
S = 1.02Δρmax = 0.25 e Å3
4241 reflectionsΔρmin = 0.66 e Å3
237 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Some 12 restraints were used in the refinement. These were associated with the chair-form morpholine ring which was disordered over two orientations with geometry controlled by the SHELXL commands:- DFIX 1.41 0.01 O21A C22A O21A C26A O21B C22B O21B C26B DFIX 1.50 0.01 C22A C23A C25A C26A C22B C23B C25B C26B DFIX 1.46 0.01 N24A C23A N24A C25A N24B C23B N24B C25B The three DFIX distances were obtained from a survey of 353 morpholine residues in the July 2004 version of the CSD

The anisotropic displacement parameters of the slightly disordered morpholine O and N atoms were constrained with the SHELXL commands:- EADP O21A O21B EADP N24A N24B

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
Cl30.88009 (6)0.90951 (19)0.954720 (15)0.1002 (3)
S10.70143 (4)1.04625 (9)0.647237 (11)0.05424 (14)
S20.90134 (4)0.70364 (9)0.617910 (12)0.05593 (14)
O20.55995 (9)0.5955 (2)0.73200 (3)0.0436 (2)
O40.95636 (11)0.9922 (2)0.77300 (3)0.0529 (3)
N10.67375 (11)0.4770 (2)0.78828 (3)0.0415 (3)
H10.62020.34700.78940.050*
N30.75303 (10)0.8114 (2)0.75390 (3)0.0326 (2)
C20.65567 (12)0.6215 (3)0.75687 (3)0.0353 (3)
C40.87680 (12)0.8260 (2)0.77732 (3)0.0357 (3)
C50.90031 (12)0.6139 (3)0.80604 (4)0.0379 (3)
H5A0.96470.67700.82690.046*
H5B0.93930.46300.79540.046*
C60.77662 (14)0.5217 (3)0.82082 (4)0.0425 (3)
H60.79730.35100.83320.051*
C110.73705 (12)0.7097 (3)0.84928 (4)0.0367 (3)
C120.81392 (13)0.7219 (3)0.88428 (4)0.0478 (3)
H120.88750.61190.89020.057*
C130.78205 (14)0.8973 (4)0.91069 (4)0.0532 (4)
C140.67551 (17)1.0636 (4)0.90310 (5)0.0566 (4)
H140.65601.18250.92090.068*
C150.59828 (17)1.0500 (3)0.86840 (6)0.0583 (4)
H150.52491.16090.86290.070*
C160.62646 (14)0.8756 (3)0.84134 (4)0.0473 (3)
H160.57210.86910.81810.057*
C270.77716 (15)0.9175 (3)0.61088 (4)0.0464 (3)
C280.75912 (14)0.8381 (3)0.68641 (4)0.0413 (3)
H28A0.71280.67000.68380.050*
H28B0.85370.80530.68840.050*
C290.73048 (15)0.9845 (3)0.72098 (4)0.0426 (3)
H29A0.78781.13810.72550.051*
H29B0.63901.04520.71670.051*
O21A0.6463 (10)1.292 (2)0.5115 (3)0.078 (2)0.50
N24A0.7161 (17)0.993 (5)0.5768 (3)0.061 (3)0.50
C22A0.6017 (3)1.3522 (6)0.54540 (9)0.0492 (6)*0.50
H22A0.66531.46860.56030.059*0.50
H22B0.51721.44380.54000.059*0.50
C23A0.5871 (3)1.1218 (6)0.56569 (9)0.0498 (6)*0.50
H23A0.52641.00190.55050.060*0.50
H23B0.54961.16560.58780.060*0.50
C25A0.7616 (4)0.9482 (6)0.54117 (10)0.0481 (7)*0.50
H25A0.84690.85860.54580.058*0.50
H25B0.69880.83370.52570.058*0.50
C26A0.7744 (3)1.1789 (6)0.52222 (9)0.0489 (6)*0.50
H26A0.81411.14320.50020.059*0.50
H26B0.83171.30080.53810.059*0.50
O21B0.6208 (10)1.238 (2)0.5072 (3)0.078 (2)0.50
N24B0.7310 (17)1.039 (5)0.5777 (3)0.061 (3)0.50
C22B0.5417 (3)1.2155 (6)0.53547 (8)0.0485 (6)*0.50
H22C0.49841.04420.53390.058*0.50
H22D0.47331.35080.53210.058*0.50
C23B0.6305 (3)1.2476 (7)0.57405 (9)0.0495 (6)*0.50
H23C0.67271.41990.57590.059*0.50
H23D0.57741.23210.59380.059*0.50
C25B0.8085 (3)1.0127 (7)0.54752 (9)0.0469 (7)*0.50
H25C0.85720.84710.54990.056*0.50
H25D0.87191.15650.54850.056*0.50
C26B0.7091 (3)1.0196 (6)0.50967 (9)0.0481 (6)*0.50
H26C0.75911.02790.48920.058*0.50
H26D0.65780.85730.50700.058*0.50
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cl30.0807 (4)0.1683 (7)0.0473 (3)0.0141 (4)0.0014 (2)0.0300 (3)
S10.0624 (3)0.0640 (3)0.0370 (2)0.01415 (17)0.01040 (17)0.00937 (15)
S20.0561 (3)0.0635 (3)0.0479 (2)0.00682 (17)0.00789 (18)0.00020 (17)
O20.0330 (4)0.0544 (6)0.0406 (5)0.0025 (4)0.0020 (4)0.0039 (4)
O40.0451 (5)0.0570 (6)0.0553 (7)0.0166 (5)0.0049 (5)0.0051 (5)
N10.0448 (6)0.0415 (6)0.0353 (6)0.0137 (4)0.0013 (5)0.0057 (4)
N30.0324 (5)0.0384 (5)0.0266 (5)0.0039 (4)0.0037 (4)0.0007 (4)
C20.0346 (6)0.0399 (6)0.0312 (6)0.0038 (4)0.0049 (5)0.0036 (4)
C40.0364 (6)0.0389 (6)0.0323 (6)0.0011 (5)0.0069 (5)0.0066 (4)
C50.0328 (6)0.0445 (6)0.0351 (6)0.0055 (5)0.0017 (5)0.0049 (5)
C60.0428 (7)0.0450 (7)0.0375 (7)0.0046 (5)0.0003 (5)0.0080 (5)
C110.0329 (5)0.0444 (6)0.0339 (6)0.0062 (5)0.0084 (5)0.0074 (5)
C120.0355 (6)0.0632 (9)0.0453 (8)0.0063 (6)0.0083 (6)0.0048 (6)
C130.0398 (7)0.0793 (11)0.0408 (8)0.0024 (7)0.0079 (6)0.0090 (7)
C140.0537 (9)0.0636 (9)0.0557 (9)0.0015 (7)0.0186 (7)0.0116 (7)
C150.0519 (9)0.0574 (9)0.0675 (11)0.0159 (7)0.0150 (8)0.0025 (7)
C160.0389 (7)0.0582 (8)0.0442 (7)0.0058 (6)0.0052 (6)0.0070 (6)
C270.0480 (7)0.0549 (8)0.0349 (7)0.0037 (6)0.0029 (6)0.0042 (5)
C280.0441 (7)0.0482 (7)0.0324 (6)0.0008 (5)0.0088 (5)0.0015 (5)
C290.0487 (7)0.0429 (6)0.0351 (7)0.0021 (5)0.0034 (5)0.0035 (5)
O21A0.092 (3)0.092 (4)0.0519 (19)0.012 (3)0.015 (2)0.022 (2)
N24A0.055 (3)0.092 (6)0.0360 (8)0.018 (4)0.0103 (13)0.0107 (19)
O21B0.092 (3)0.092 (4)0.0519 (19)0.012 (3)0.015 (2)0.022 (2)
N24B0.055 (3)0.092 (6)0.0360 (8)0.018 (4)0.0103 (13)0.0107 (19)
Geometric parameters (Å, º) top
Cl3—C131.7375 (17)C28—H28B0.97
S1—C271.7621 (16)C29—H29A0.97
S1—C281.7875 (14)C29—H29B0.97
S2—C271.6530 (16)O21A—C22A1.415 (8)
O2—C21.2201 (15)O21A—C26A1.420 (8)
O4—C41.1974 (17)N24A—C25A1.462 (8)
N1—C21.3405 (17)N24A—C23A1.463 (9)
N1—C61.4592 (17)C22A—C23A1.401 (4)
N1—H10.86C22A—H22A0.97
N3—C21.3993 (16)C22A—H22B0.97
N3—C41.4003 (15)C23A—H23A0.97
N3—C291.4680 (16)C23A—H23B0.97
C4—C51.4873 (18)C25A—C26A1.372 (4)
C5—C61.5249 (19)C25A—H25A0.97
C5—H5A0.97C25A—H25B0.97
C5—H5B0.97C26A—H26A0.97
C6—C111.5082 (19)C26A—H26B0.97
C6—H60.98O21B—C22B1.414 (8)
C11—C121.3773 (19)O21B—C26B1.419 (8)
C11—C161.3968 (19)N24B—C23B1.461 (9)
C12—C131.385 (2)N24B—C25B1.461 (8)
C12—H120.93C22B—C23B1.543 (4)
C13—C141.365 (2)C22B—H22C0.97
C14—C151.370 (3)C22B—H22D0.97
C14—H140.93C23B—H23C0.97
C15—C161.386 (2)C23B—H23D0.97
C15—H150.93C25B—C26B1.565 (4)
C16—H160.93C25B—H25C0.97
C27—N24A1.344 (11)C25B—H25D0.97
C27—N24B1.364 (10)C26B—H26C0.97
C28—C291.5271 (19)C26B—H26D0.97
C28—H28A0.97
C27—S1—C28104.50 (7)C28—C29—H29B109.5
C2—N1—C6125.51 (11)H29A—C29—H29B108.1
C2—N1—H1117.2C22A—O21A—C26A105.2 (7)
C6—N1—H1117.2C27—N24A—C25A127.0 (6)
C2—N3—C4124.65 (10)C27—N24A—C23A129.5 (6)
C2—N3—C29117.18 (10)C25A—N24A—C23A103.4 (7)
C4—N3—C29117.66 (10)C23A—C22A—O21A110.9 (5)
O2—C2—N1123.28 (12)C23A—C22A—H22A109.5
O2—C2—N3120.46 (12)O21A—C22A—H22A109.5
N1—C2—N3116.26 (11)C23A—C22A—H22B109.5
O4—C4—N3121.29 (12)O21A—C22A—H22B109.5
O4—C4—C5124.47 (13)H22A—C22A—H22B108.0
N3—C4—C5114.19 (11)C22A—C23A—N24A110.1 (9)
C4—C5—C6114.96 (10)C22A—C23A—H23A109.6
C4—C5—H5A108.5N24A—C23A—H23A109.6
C6—C5—H5A108.5C22A—C23A—H23B109.6
C4—C5—H5B108.5N24A—C23A—H23B109.6
C6—C5—H5B108.5H23A—C23A—H23B108.1
H5A—C5—H5B107.5C26A—C25A—N24A112.4 (9)
N1—C6—C11114.39 (11)C26A—C25A—H25A109.1
N1—C6—C5106.72 (11)N24A—C25A—H25A109.1
C11—C6—C5112.37 (11)C26A—C25A—H25B109.1
N1—C6—H6107.7N24A—C25A—H25B109.1
C11—C6—H6107.7H25A—C25A—H25B107.8
C5—C6—H6107.7C25A—C26A—O21A108.7 (6)
C12—C11—C16118.54 (13)C25A—C26A—H26A110.0
C12—C11—C6118.90 (12)O21A—C26A—H26A110.0
C16—C11—C6122.55 (12)C25A—C26A—H26B110.0
C11—C12—C13120.23 (14)O21A—C26A—H26B110.0
C11—C12—H12119.9H26A—C26A—H26B108.3
C13—C12—H12119.9C22B—O21B—C26B109.0 (7)
C14—C13—C12121.81 (15)C27—N24B—C23B122.6 (6)
C14—C13—Cl3118.62 (13)C27—N24B—C25B118.0 (6)
C12—C13—Cl3119.56 (13)C23B—N24B—C25B117.3 (8)
C13—C14—C15118.01 (15)O21B—C22B—C23B109.3 (5)
C13—C14—H14121.0O21B—C22B—H22C109.8
C15—C14—H14121.0C23B—C22B—H22C109.8
C14—C15—C16121.83 (15)O21B—C22B—H22D109.8
C14—C15—H15119.1C23B—C22B—H22D109.8
C16—C15—H15119.1H22C—C22B—H22D108.3
C15—C16—C11119.57 (14)N24B—C23B—C22B107.6 (8)
C15—C16—H16120.2N24B—C23B—H23C110.2
C11—C16—H16120.2C22B—C23B—H23C110.2
N24A—C27—S2123.6 (4)N24B—C23B—H23D110.2
N24B—C27—S2125.0 (3)C22B—C23B—H23D110.2
N24A—C27—S1113.0 (3)H23C—C23B—H23D108.5
N24B—C27—S1111.3 (4)N24B—C25B—C26B107.7 (7)
S2—C27—S1123.21 (9)N24B—C25B—H25C110.2
C29—C28—S1106.52 (9)C26B—C25B—H25C110.2
C29—C28—H28A110.4N24B—C25B—H25D110.2
S1—C28—H28A110.4C26B—C25B—H25D110.2
C29—C28—H28B110.4H25C—C25B—H25D108.5
S1—C28—H28B110.4O21B—C26B—C25B112.6 (5)
H28A—C28—H28B108.6O21B—C26B—H26C109.1
N3—C29—C28110.70 (11)C25B—C26B—H26C109.1
N3—C29—H29A109.5O21B—C26B—H26D109.1
C28—C29—H29A109.5C25B—C26B—H26D109.1
N3—C29—H29B109.5H26C—C26B—H26D107.8
C6—N1—C2—O2171.78 (13)C27—S1—C28—C29163.95 (10)
C6—N1—C2—N37.37 (19)C2—N3—C29—C2876.45 (14)
C4—N3—C2—O2168.17 (12)C4—N3—C29—C2895.72 (14)
C29—N3—C2—O23.40 (17)S1—C28—C29—N3170.24 (9)
C4—N3—C2—N112.65 (17)N24B—C27—N24A—C25A88 (3)
C29—N3—C2—N1175.77 (11)S2—C27—N24A—C25A13 (3)
C2—N3—C4—O4179.20 (12)S1—C27—N24A—C25A172.3 (18)
C29—N3—C4—O47.67 (18)N24B—C27—N24A—C23A96 (4)
C2—N3—C4—C51.61 (16)S2—C27—N24A—C23A162.4 (16)
C29—N3—C4—C5169.92 (11)S1—C27—N24A—C23A12 (3)
O4—C4—C5—C6149.10 (13)C26A—O21A—C22A—C23A63.7 (9)
N3—C4—C5—C633.40 (15)O21A—C22A—C23A—N24A64.0 (10)
C2—N1—C6—C1188.77 (17)C27—N24A—C23A—C22A126 (2)
C2—N1—C6—C536.16 (18)C25A—N24A—C23A—C22A57.4 (17)
C4—C5—C6—N147.59 (15)C27—N24A—C25A—C26A123 (2)
C4—C5—C6—C1178.56 (14)C23A—N24A—C25A—C26A60.1 (17)
N1—C6—C11—C12166.07 (12)N24A—C25A—C26A—O21A66.0 (10)
C5—C6—C11—C1272.05 (16)C22A—O21A—C26A—C25A63.4 (9)
N1—C6—C11—C1615.00 (18)N24A—C27—N24B—C23B100 (3)
C5—C6—C11—C16106.88 (14)S2—C27—N24B—C23B173.3 (12)
C16—C11—C12—C130.6 (2)S1—C27—N24B—C23B1 (2)
C6—C11—C12—C13178.36 (14)N24A—C27—N24B—C25B97 (4)
C11—C12—C13—C140.5 (3)S2—C27—N24B—C25B10 (3)
C11—C12—C13—Cl3179.91 (12)S1—C27—N24B—C25B162.7 (14)
C12—C13—C14—C151.0 (3)C26B—O21B—C22B—C23B66.7 (9)
Cl3—C13—C14—C15179.35 (14)C27—N24B—C23B—C22B144.5 (18)
C13—C14—C15—C160.5 (3)C25B—N24B—C23B—C22B52 (2)
C14—C15—C16—C110.5 (3)O21B—C22B—C23B—N24B59.7 (11)
C12—C11—C16—C151.1 (2)C27—N24B—C25B—C26B148.7 (16)
C6—C11—C16—C15177.85 (14)C23B—N24B—C25B—C26B47 (2)
C28—S1—C27—N24A160.8 (13)C22B—O21B—C26B—C25B62.8 (9)
C28—S1—C27—N24B173.4 (13)N24B—C25B—C26B—O21B50.6 (11)
C28—S1—C27—S213.72 (12)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.862.263.0598 (15)154
C16—H16···O2ii0.932.373.1991 (18)149
C5—H5B···O4iii0.972.533.4483 (18)157
Symmetry codes: (i) x+1, y1/2, z+3/2; (ii) x+1, y+1/2, z+3/2; (iii) x, y1, z.

Experimental details

Crystal data
Chemical formulaC17H20ClN3O3S2
Mr413.93
Crystal system, space groupMonoclinic, P21/c
Temperature (K)293
a, b, c (Å)10.2010 (12), 5.0606 (4), 36.290 (5)
β (°) 99.692 (10)
V3)1846.6 (4)
Z4
Radiation typeMo Kα
µ (mm1)0.46
Crystal size (mm)0.50 × 0.20 × 0.02
Data collection
DiffractometerStoe IPDS2
diffractometer
Absorption correction
No. of measured, independent and
observed [I > 2σ(I)] reflections
13939, 3610, 1270
Rint0.116
(sin θ/λ)max1)0.617
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.032, 0.121, 1.02
No. of reflections4241
No. of parameters237
No. of restraints12
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.25, 0.66

Computer programs: X-AREA (Stoe & Cie, 2002), X-AREA, X-RED32 (Stoe & Cie, 2002), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEPIII (Burnett & Johnson, 1996), WinGX (Farrugia, 1997) and PARST (Nardelli, 1995).

Selected geometric parameters (Å, º) top
S1—C271.7621 (16)N1—C61.4592 (17)
S1—C281.7875 (14)N3—C21.3993 (16)
S2—C271.6530 (16)N3—C41.4003 (15)
O2—C21.2201 (15)C4—C51.4873 (18)
O4—C41.1974 (17)C5—C61.5249 (19)
N1—C21.3405 (17)
S1—C28—C29—N3170.24 (9)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.862.263.0598 (15)154
C16—H16···O2ii0.932.373.1991 (18)149
C5—H5B···O4iii0.972.533.4483 (18)157
Symmetry codes: (i) x+1, y1/2, z+3/2; (ii) x+1, y+1/2, z+3/2; (iii) x, y1, z.
 

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