In the three title compounds, [Pd(C6H6O4)(C10H8N2)], (I), [Pd(C6H6O4)(C12H8N2)]·H2O, (IIa), and [Pd(C6H6O4)(C12H8N2)]·2H2O, (IIb), respectively, each PdII atom has a similar distorted cis-planar four-coordination geometry, completed by two O atoms of a bidentate 1,1-cyclobutanedicarboxylate anion and two N atoms of either a 2,2'-bipyridine or a 1,10-phenanthroline ligand.
Supporting information
CCDC references: 233102; 233103; 233104
Compound (I), [Pd(bpy)(cbdca)], was synthesized as follows. First, bpy was reacted with palladium acetate, [Pd(CH3COOH)2], for 15 min at room temperature (molar ratio 1:1) in dimethylformamide, then an equimolar amount of 1,1-cyclobutanedicarboxylic acid was added. This mixture was left to stand at room temperature and pale-yellow prism crystals of (I) appeared in a few days. Compound (II), [Pd(phen)(cbdca)], was synthesized using a method similar to that used for (I), except that phen was used in place of bpy. Crystals of the monohydrate, (IIa), appeared in a few days. A small quantity of crystals of the dihydrate, (IIb), appeared in the same crystallizing vessel with (IIa). The crystals of (IIb) are rectangular, thin and plate-like, while those of (IIa) are prisms. The colour of the crystals is pale yellow for both (IIa) and (IIb).
For (I), all H atoms were located in difference Fourier maps and were then regenerated at the ideal positions by riding models using HFIX instructions (SHELXL97; Sheldrick, 1997). In (IIa), there is positional disorder of the water molecule over two sites, O5A and O5B. The occupation factors were assigned to 43% and 57%, respectively. For (IIa) and (IIb), all H atoms were located in the difference Fourier maps, and then, except for those of the water molecules, were regenerated at the ideal positions by riding models using HFIX instructions. The H atoms of the water molecules were fixed at the positions located by the difference Fourier maps.
For all compounds, data collection: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1992); cell refinement: MSC/AFC Diffractometer Control Software; data reduction: TEXSAN (Molecular Structure Corporation, 2000). Program(s) used to solve structure: SIR97 (Altomare et al., 1999) for (I); SHELXS97 (Sheldrick, 1997) for (IIa); SHELXS97 (Scheldrick, 1997) for (IIb). Program(s) used to refine structure: SHELXL97 (Sheldrick, 1997) for (I), (IIa); SHELXL97 (Scheldrick, 1997) for (IIb). For all compounds, molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: TEXSAN.
(I) (2,2'-Bipyridine-
κ2N,
N')(1,1-cyclobutanedicarboxylato-
κ2O,
O')palladium(II)
top
Crystal data top
[Pd(C6H6O4)(C10H8N2)] | Z = 2 |
Mr = 404.71 | F(000) = 404.0 |
Triclinic, P1 | Dx = 1.857 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.7107 Å |
a = 9.087 (1) Å | Cell parameters from 25 reflections |
b = 9.440 (1) Å | θ = 14.9–15.0° |
c = 9.9820 (9) Å | µ = 1.31 mm−1 |
α = 90.458 (9)° | T = 296 K |
β = 113.095 (9)° | Prism, yellow |
γ = 111.077 (9)° | 0.35 × 0.20 × 0.10 mm |
V = 723.78 (15) Å3 | |
Data collection top
Rigaku AFC-5R diffractometer | Rint = 0.014 |
ω/2θ scans | θmax = 27.5° |
Absorption correction: ψ scan (North et al., 1968) | h = −11→11 |
Tmin = 0.732, Tmax = 0.878 | k = 0→12 |
3512 measured reflections | l = −12→12 |
3315 independent reflections | 3 standard reflections every 150 reflections |
3005 reflections with I > 2σ(I) | intensity decay: 0.9% |
Refinement top
Refinement on F2 | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.022 | w = 1/[σ2(Fo2) + (0.0245P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.057 | (Δ/σ)max = 0.001 |
S = 1.30 | Δρmax = 0.40 e Å−3 |
3315 reflections | Δρmin = −0.45 e Å−3 |
208 parameters | |
Crystal data top
[Pd(C6H6O4)(C10H8N2)] | γ = 111.077 (9)° |
Mr = 404.71 | V = 723.78 (15) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.087 (1) Å | Mo Kα radiation |
b = 9.440 (1) Å | µ = 1.31 mm−1 |
c = 9.9820 (9) Å | T = 296 K |
α = 90.458 (9)° | 0.35 × 0.20 × 0.10 mm |
β = 113.095 (9)° | |
Data collection top
Rigaku AFC-5R diffractometer | 3005 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.014 |
Tmin = 0.732, Tmax = 0.878 | 3 standard reflections every 150 reflections |
3512 measured reflections | intensity decay: 0.9% |
3315 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.022 | 208 parameters |
wR(F2) = 0.057 | H-atom parameters constrained |
S = 1.30 | Δρmax = 0.40 e Å−3 |
3315 reflections | Δρmin = −0.45 e Å−3 |
Special details top
Refinement. Refinement using reflections with F2 > −10.0 σ(F2). The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Pd1 | 0.58260 (2) | 0.10529 (2) | 0.39803 (2) | 0.02665 (6) | |
O1 | 0.7302 (2) | −0.0082 (2) | 0.5044 (2) | 0.0342 (4) | |
O2 | 0.9642 (3) | −0.0003 (2) | 0.6939 (2) | 0.0491 (5) | |
O3 | 0.6978 (2) | 0.2716 (2) | 0.5754 (2) | 0.0345 (4) | |
O4 | 0.9308 (2) | 0.4054 (2) | 0.7777 (2) | 0.0501 (5) | |
N1 | 0.4527 (2) | −0.0496 (2) | 0.2113 (2) | 0.0288 (4) | |
N2 | 0.4191 (2) | 0.1991 (2) | 0.2784 (2) | 0.0288 (4) | |
C2 | 0.3338 (3) | −0.0161 (3) | 0.0986 (3) | 0.0308 (5) | |
C3 | 0.2395 (3) | −0.1116 (3) | −0.0372 (3) | 0.0406 (6) | |
C4 | 0.2665 (4) | −0.2443 (3) | −0.0573 (3) | 0.0473 (7) | |
C5 | 0.3867 (4) | −0.2769 (3) | 0.0586 (3) | 0.0442 (6) | |
C6 | 0.4777 (3) | −0.1779 (3) | 0.1921 (3) | 0.0373 (5) | |
C12 | 0.3139 (3) | 0.1252 (3) | 0.1374 (2) | 0.0298 (5) | |
C13 | 0.1952 (3) | 0.1790 (3) | 0.0428 (3) | 0.0393 (5) | |
C14 | 0.1854 (3) | 0.3107 (3) | 0.0944 (3) | 0.0416 (6) | |
C15 | 0.2904 (3) | 0.3831 (3) | 0.2391 (3) | 0.0413 (6) | |
C16 | 0.4054 (3) | 0.3233 (3) | 0.3287 (3) | 0.0348 (5) | |
C17 | 0.8850 (3) | 0.0656 (3) | 0.6081 (2) | 0.0311 (5) | |
C18 | 0.8615 (3) | 0.3128 (3) | 0.6641 (2) | 0.0298 (5) | |
C19 | 0.9643 (3) | 0.2401 (3) | 0.6184 (2) | 0.0289 (4) | |
C20 | 0.9851 (3) | 0.2878 (3) | 0.4744 (3) | 0.0379 (5) | |
C21 | 1.1816 (4) | 0.3537 (4) | 0.5624 (4) | 0.0592 (8) | |
C22 | 1.1638 (3) | 0.3179 (3) | 0.7063 (3) | 0.0440 (6) | |
H3 | 0.1587 | −0.0874 | −0.1144 | 0.0488* | |
H4 | 0.2040 | −0.3103 | −0.1482 | 0.0568* | |
H5 | 0.4066 | −0.3652 | 0.0469 | 0.0530* | |
H6 | 0.5584 | −0.2009 | 0.2706 | 0.0448* | |
H13 | 0.1231 | 0.1276 | −0.0539 | 0.0471* | |
H14 | 0.1084 | 0.3499 | 0.0317 | 0.0499* | |
H15 | 0.2841 | 0.4706 | 0.2758 | 0.0495* | |
H16 | 0.4754 | 0.3709 | 0.4268 | 0.0417* | |
H20A | 0.9415 | 0.2011 | 0.3969 | 0.0455* | |
H20B | 0.9391 | 0.3646 | 0.4363 | 0.0455* | |
H21A | 1.2369 | 0.4630 | 0.5633 | 0.0710* | |
H21B | 1.2377 | 0.2971 | 0.5332 | 0.0710* | |
H22A | 1.2024 | 0.4091 | 0.7770 | 0.0528* | |
H22B | 1.2165 | 0.2478 | 0.7526 | 0.0528* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Pd1 | 0.0245 (1) | 0.0295 (1) | 0.02334 (9) | 0.01352 (7) | 0.00500 (7) | 0.00398 (6) |
O1 | 0.0329 (9) | 0.0308 (8) | 0.0332 (9) | 0.0168 (7) | 0.0045 (7) | 0.0058 (7) |
O2 | 0.053 (1) | 0.042 (1) | 0.0373 (10) | 0.0290 (9) | −0.0042 (8) | 0.0062 (8) |
O3 | 0.0317 (8) | 0.0413 (9) | 0.0290 (8) | 0.0208 (7) | 0.0058 (7) | −0.0005 (7) |
O4 | 0.044 (1) | 0.059 (1) | 0.039 (1) | 0.0290 (10) | 0.0015 (8) | −0.0147 (9) |
N1 | 0.0273 (9) | 0.0288 (9) | 0.0271 (9) | 0.0115 (8) | 0.0079 (8) | 0.0050 (7) |
N2 | 0.0261 (9) | 0.0330 (10) | 0.0278 (9) | 0.0152 (8) | 0.0087 (7) | 0.0071 (8) |
C2 | 0.028 (1) | 0.032 (1) | 0.028 (1) | 0.0107 (9) | 0.0082 (9) | 0.0056 (9) |
C3 | 0.040 (1) | 0.043 (1) | 0.028 (1) | 0.016 (1) | 0.003 (1) | 0.003 (1) |
C4 | 0.053 (2) | 0.038 (1) | 0.035 (1) | 0.014 (1) | 0.006 (1) | −0.005 (1) |
C5 | 0.054 (2) | 0.032 (1) | 0.043 (1) | 0.020 (1) | 0.015 (1) | 0.003 (1) |
C6 | 0.040 (1) | 0.036 (1) | 0.034 (1) | 0.019 (1) | 0.010 (1) | 0.0069 (10) |
C12 | 0.027 (1) | 0.031 (1) | 0.029 (1) | 0.0115 (9) | 0.0094 (9) | 0.0080 (9) |
C13 | 0.035 (1) | 0.044 (1) | 0.031 (1) | 0.018 (1) | 0.0041 (10) | 0.008 (1) |
C14 | 0.037 (1) | 0.046 (1) | 0.043 (1) | 0.025 (1) | 0.009 (1) | 0.017 (1) |
C15 | 0.043 (1) | 0.042 (1) | 0.047 (1) | 0.027 (1) | 0.017 (1) | 0.009 (1) |
C16 | 0.031 (1) | 0.038 (1) | 0.035 (1) | 0.017 (1) | 0.0104 (10) | 0.0037 (10) |
C17 | 0.034 (1) | 0.036 (1) | 0.025 (1) | 0.022 (1) | 0.0079 (9) | 0.0043 (9) |
C18 | 0.032 (1) | 0.031 (1) | 0.024 (1) | 0.0174 (10) | 0.0062 (9) | 0.0038 (9) |
C19 | 0.027 (1) | 0.033 (1) | 0.026 (1) | 0.0153 (9) | 0.0076 (9) | 0.0031 (9) |
C20 | 0.047 (1) | 0.036 (1) | 0.038 (1) | 0.020 (1) | 0.022 (1) | 0.009 (1) |
C21 | 0.044 (2) | 0.063 (2) | 0.077 (2) | 0.022 (1) | 0.032 (2) | 0.030 (2) |
C22 | 0.030 (1) | 0.047 (2) | 0.048 (2) | 0.016 (1) | 0.010 (1) | −0.005 (1) |
Geometric parameters (Å, º) top
Pd1—O1 | 2.002 (2) | C12—C13 | 1.384 (4) |
Pd1—O3 | 2.004 (2) | C13—C14 | 1.388 (5) |
Pd1—N1 | 1.999 (2) | C13—H13 | 0.930 |
Pd1—N2 | 1.998 (2) | C14—C15 | 1.377 (3) |
O1—C17 | 1.295 (2) | C14—H14 | 0.930 |
O2—C17 | 1.219 (3) | C15—C16 | 1.382 (4) |
O3—C18 | 1.301 (3) | C15—H15 | 0.930 |
O4—C18 | 1.214 (3) | C16—H16 | 0.930 |
N1—C2 | 1.353 (3) | C17—C19 | 1.526 (3) |
N1—C6 | 1.335 (4) | C18—C19 | 1.530 (4) |
N2—C12 | 1.353 (3) | C19—C20 | 1.571 (4) |
N2—C16 | 1.336 (4) | C19—C22 | 1.543 (3) |
C2—C3 | 1.377 (3) | C20—C21 | 1.520 (4) |
C2—C12 | 1.477 (4) | C20—H20A | 0.970 |
C3—C4 | 1.388 (5) | C20—H20B | 0.970 |
C3—H3 | 0.930 | C21—C22 | 1.534 (5) |
C4—C5 | 1.372 (4) | C21—H21A | 0.970 |
C4—H4 | 0.930 | C21—H21B | 0.970 |
C5—C6 | 1.376 (3) | C22—H22A | 0.970 |
C5—H5 | 0.930 | C22—H22B | 0.970 |
C6—H6 | 0.930 | | |
| | | |
Pd1···O1i | 3.191 (2) | O2···C16i | 3.558 (3) |
Pd1···Pd1i | 3.2658 (4) | O3···C6i | 3.261 (4) |
O1···N2i | 3.225 (3) | O3···N1i | 3.330 (3) |
O1···C16i | 3.492 (3) | O4···C15iv | 3.268 (4) |
O1···O3i | 3.539 (2) | O4···C4v | 3.416 (3) |
O2···C13ii | 3.319 (3) | O4···C14ii | 3.456 (3) |
O2···C3ii | 3.352 (3) | N2···C17i | 3.564 (3) |
O2···N2i | 3.434 (3) | C3···C14vi | 3.435 (4) |
O2···C20iii | 3.441 (4) | C13···C22vii | 3.560 (4) |
O2···C12i | 3.441 (4) | | |
| | | |
O1—Pd1—O3 | 91.68 (7) | C15—C14—H14 | 120.2 |
O1—Pd1—N1 | 93.94 (8) | C14—C15—C16 | 118.7 (3) |
O1—Pd1—N2 | 174.40 (6) | C14—C15—H15 | 120.6 |
O3—Pd1—N1 | 174.37 (9) | C16—C15—H15 | 120.7 |
O3—Pd1—N2 | 93.57 (8) | N2—C16—C15 | 121.9 (2) |
N1—Pd1—N2 | 80.80 (8) | N2—C16—H16 | 119.0 |
Pd1—O1—C17 | 120.5 (2) | C15—C16—H16 | 119.0 |
Pd1—O3—C18 | 120.8 (2) | O1—C17—O2 | 121.9 (2) |
Pd1—N1—C2 | 115.3 (2) | O1—C17—C19 | 116.8 (2) |
Pd1—N1—C6 | 124.8 (1) | O2—C17—C19 | 121.3 (2) |
C2—N1—C6 | 119.9 (2) | O3—C18—O4 | 121.9 (3) |
Pd1—N2—C12 | 115.2 (2) | O3—C18—C19 | 117.0 (2) |
Pd1—N2—C16 | 125.0 (1) | O4—C18—C19 | 121.2 (2) |
C12—N2—C16 | 119.8 (2) | C17—C19—C18 | 109.5 (2) |
N1—C2—C3 | 120.8 (3) | C17—C19—C20 | 112.6 (2) |
N1—C2—C12 | 114.1 (2) | C17—C19—C22 | 115.4 (2) |
C3—C2—C12 | 125.0 (2) | C18—C19—C20 | 113.9 (2) |
C2—C3—C4 | 119.2 (2) | C18—C19—C22 | 115.1 (2) |
C2—C3—H3 | 120.4 | C20—C19—C22 | 89.3 (2) |
C4—C3—H3 | 120.4 | C19—C20—C21 | 89.2 (2) |
C3—C4—C5 | 119.1 (2) | C19—C20—H20A | 113.8 |
C3—C4—H4 | 120.5 | C19—C20—H20B | 113.8 |
C5—C4—H4 | 120.5 | C21—C20—H20A | 113.8 |
C4—C5—C6 | 119.6 (3) | C21—C20—H20B | 113.8 |
C4—C5—H5 | 120.2 | H20A—C20—H20B | 111.0 |
C6—C5—H5 | 120.2 | C20—C21—C22 | 91.5 (3) |
N1—C6—C5 | 121.4 (2) | C20—C21—H21A | 113.4 |
N1—C6—H6 | 119.3 | C20—C21—H21B | 113.4 |
C5—C6—H6 | 119.3 | C22—C21—H21A | 113.4 |
N2—C12—C2 | 114.5 (2) | C22—C21—H21B | 113.4 |
N2—C12—C13 | 120.8 (3) | H21A—C21—H21B | 110.7 |
C2—C12—C13 | 124.7 (2) | C19—C22—C21 | 89.8 (2) |
C12—C13—C14 | 119.0 (2) | C19—C22—H22A | 113.7 |
C12—C13—H13 | 120.5 | C19—C22—H22B | 113.7 |
C14—C13—H13 | 120.5 | C21—C22—H22A | 113.7 |
C13—C14—C15 | 119.6 (3) | C21—C22—H22B | 113.7 |
C13—C14—H14 | 120.2 | H22A—C22—H22B | 110.9 |
| | | |
Pd1—O1—C17—O2 | 165.3 (2) | N1—C2—C12—N2 | 0.8 (3) |
Pd1—O1—C17—C19 | −14.6 (3) | N1—C2—C12—C13 | −177.0 (3) |
Pd1—O3—C18—O4 | −174.8 (2) | N1—C6—C5—C4 | −0.6 (5) |
Pd1—O3—C18—C19 | 5.8 (3) | N2—Pd1—O3—C18 | −148.4 (2) |
Pd1—N1—C2—C3 | 178.1 (2) | N2—Pd1—N1—C2 | 3.8 (2) |
Pd1—N1—C2—C12 | −3.6 (3) | N2—Pd1—N1—C6 | −177.1 (2) |
Pd1—N1—C6—C5 | −178.0 (2) | N2—C12—C2—C3 | 179.0 (3) |
Pd1—N2—C12—C2 | 2.4 (3) | N2—C12—C13—C14 | 0.1 (4) |
Pd1—N2—C12—C13 | −179.7 (2) | N2—C16—C15—C14 | 1.0 (4) |
Pd1—N2—C16—C15 | 179.3 (2) | C2—N1—C6—C5 | 1.1 (4) |
O1—Pd1—O3—C18 | 33.6 (2) | C2—C3—C4—C5 | −0.1 (5) |
O1—Pd1—N1—C2 | −178.2 (2) | C2—C12—N2—C16 | −176.1 (2) |
O1—Pd1—N1—C6 | 0.9 (2) | C2—C12—C13—C14 | 177.8 (3) |
O1—C17—C19—C18 | 66.9 (3) | C3—C2—N1—C6 | −1.1 (4) |
O1—C17—C19—C20 | −60.9 (3) | C3—C2—C12—C13 | 1.2 (4) |
O1—C17—C19—C22 | −161.4 (3) | C3—C4—C5—C6 | 0.1 (5) |
O2—C17—C19—C18 | −113.0 (3) | C4—C3—C2—C12 | −177.6 (3) |
O2—C17—C19—C20 | 119.2 (3) | C6—N1—C2—C12 | 177.3 (2) |
O2—C17—C19—C22 | 18.7 (4) | C12—N2—C16—C15 | −2.4 (4) |
O3—Pd1—O1—C17 | −28.8 (2) | C12—C13—C14—C15 | −1.5 (4) |
O3—Pd1—N2—C12 | 176.7 (2) | C13—C12—N2—C16 | 1.8 (4) |
O3—Pd1—N2—C16 | −4.9 (2) | C13—C14—C15—C16 | 1.0 (4) |
O3—C18—C19—C17 | −61.4 (3) | C17—C19—C20—C21 | −113.7 (3) |
O3—C18—C19—C20 | 65.7 (2) | C17—C19—C22—C21 | 111.2 (3) |
O3—C18—C19—C22 | 166.7 (2) | C18—C19—C20—C21 | 120.8 (2) |
O4—C18—C19—C17 | 119.2 (2) | C18—C19—C22—C21 | −119.7 (3) |
O4—C18—C19—C20 | −113.7 (2) | C19—C20—C21—C22 | −3.6 (2) |
O4—C18—C19—C22 | −12.7 (3) | C19—C22—C21—C20 | 3.7 (3) |
N1—Pd1—O1—C17 | 151.4 (2) | C20—C19—C22—C21 | −3.5 (2) |
N1—Pd1—N2—C12 | −3.3 (2) | C21—C20—C19—C22 | 3.6 (2) |
N1—Pd1—N2—C16 | 175.0 (2) | C21—C20—C19—C22 | 3.6 (2) |
N1—C2—C3—C4 | 0.6 (4) | | |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x+1, y, z+1; (iii) −x+2, −y, −z+1; (iv) −x+1, −y+1, −z+1; (v) x+1, y+1, z+1; (vi) −x, −y, −z; (vii) x−1, y, z−1. |
(IIa) (1,1-cyclobutanedicarboxylato-
κ2O,
O') (1,10-phenanthroline-
κ2N,
N')palladium(II) monohydrate
top
Crystal data top
[Pd(C6H6O4)(C12H8N2)]·H2O | F(000) = 896 |
Mr = 446.75 | Dx = 1.733 Mg m−3 |
Orthorhombic, Pnn2 | Mo Kα radiation, λ = 0.7107 Å |
Hall symbol: P 2 -2n | Cell parameters from 25 reflections |
a = 17.219 (2) Å | θ = 14.7–15.0° |
b = 18.875 (2) Å | µ = 1.12 mm−1 |
c = 5.268 (2) Å | T = 296 K |
V = 1712.2 (7) Å3 | Prism, pale yellow |
Z = 4 | 0.50 × 0.30 × 0.20 mm |
Data collection top
Rigaku AFC-5R diffractometer | Rint = 0.000 |
ω/2θ scans | θmax = 27.5° |
Absorption correction: ψ scan (North et al., 1968) | h = 0→22 |
Tmin = 0.736, Tmax = 0.800 | k = 0→24 |
2177 measured reflections | l = 0→6 |
2177 independent reflections | 3 standard reflections every 150 reflections |
1839 reflections with I > 2σ(I) | intensity decay: 0.8% |
Refinement top
Refinement on F2 | w = 1/[σ2(Fo2) + (0.0254P)2 + 2.17P] where P = (Fo2 + 2Fc2)/3 |
R[F2 > 2σ(F2)] = 0.028 | (Δ/σ)max = 0.001 |
wR(F2) = 0.079 | Δρmax = 0.51 e Å−3 |
S = 1.20 | Δρmin = −0.60 e Å−3 |
2177 reflections | Absolute structure: Flack (1983), no Friedel pairs |
244 parameters | Absolute structure parameter: 0.17 (6) |
H-atom parameters constrained | |
Crystal data top
[Pd(C6H6O4)(C12H8N2)]·H2O | V = 1712.2 (7) Å3 |
Mr = 446.75 | Z = 4 |
Orthorhombic, Pnn2 | Mo Kα radiation |
a = 17.219 (2) Å | µ = 1.12 mm−1 |
b = 18.875 (2) Å | T = 296 K |
c = 5.268 (2) Å | 0.50 × 0.30 × 0.20 mm |
Data collection top
Rigaku AFC-5R diffractometer | 1839 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.000 |
Tmin = 0.736, Tmax = 0.800 | 3 standard reflections every 150 reflections |
2177 measured reflections | intensity decay: 0.8% |
2177 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.028 | H-atom parameters constrained |
wR(F2) = 0.079 | Δρmax = 0.51 e Å−3 |
S = 1.20 | Δρmin = −0.60 e Å−3 |
2177 reflections | Absolute structure: Flack (1983), no Friedel pairs |
244 parameters | Absolute structure parameter: 0.17 (6) |
Special details top
Refinement. Refinement using reflections with F2 > −10.0 σ(F2). The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
Pd1 | 0.28978 (2) | 0.27335 (2) | 0.4658 (1) | 0.0371 (1) | |
O1 | 0.1985 (2) | 0.2533 (2) | 0.6899 (10) | 0.0432 (10) | |
O2 | 0.1103 (2) | 0.2910 (2) | 0.958 (2) | 0.054 (1) | |
O3 | 0.3230 (2) | 0.3540 (2) | 0.6884 (9) | 0.048 (1) | |
O4 | 0.2915 (2) | 0.4405 (2) | 0.958 (2) | 0.060 (1) | |
O5A | 0.4494 (9) | 0.4814 (9) | 0.683 (7) | 0.17 (1) | 0.43 |
O5B | 0.4273 (5) | 0.5093 (6) | 1.081 (5) | 0.18 (1) | 0.57 |
N1 | 0.2672 (3) | 0.1914 (2) | 0.239 (1) | 0.040 (1) | |
N2 | 0.3833 (3) | 0.2810 (3) | 0.244 (1) | 0.039 (1) | |
C1 | 0.2064 (3) | 0.1480 (3) | 0.243 (2) | 0.048 (2) | |
C2 | 0.1990 (4) | 0.0940 (4) | 0.067 (2) | 0.058 (2) | |
C3 | 0.2538 (4) | 0.0831 (3) | −0.116 (1) | 0.051 (2) | |
C4 | 0.3202 (3) | 0.1273 (3) | −0.120 (1) | 0.043 (1) | |
C5 | 0.3229 (3) | 0.1811 (3) | 0.061 (1) | 0.038 (1) | |
C6 | 0.3862 (3) | 0.2298 (3) | 0.066 (1) | 0.036 (1) | |
C7 | 0.4467 (3) | 0.2237 (3) | −0.111 (1) | 0.038 (1) | |
C8 | 0.5068 (3) | 0.2744 (4) | −0.093 (1) | 0.055 (2) | |
C9 | 0.5027 (4) | 0.3250 (4) | 0.090 (2) | 0.061 (2) | |
C10 | 0.4407 (4) | 0.3281 (3) | 0.255 (1) | 0.051 (2) | |
C11 | 0.3832 (4) | 0.1215 (3) | −0.298 (1) | 0.047 (1) | |
C12 | 0.4439 (3) | 0.1681 (3) | −0.293 (1) | 0.045 (1) | |
C13 | 0.1624 (3) | 0.3027 (3) | 0.808 (1) | 0.036 (1) | |
C14 | 0.1865 (3) | 0.3797 (3) | 0.745 (1) | 0.036 (1) | |
C15 | 0.2721 (3) | 0.3925 (3) | 0.805 (1) | 0.040 (1) | |
C16 | 0.1620 (3) | 0.3981 (3) | 0.468 (2) | 0.042 (1) | |
C17 | 0.1290 (4) | 0.4371 (4) | 0.840 (1) | 0.048 (2) | |
C18 | 0.0938 (4) | 0.4402 (4) | 0.571 (2) | 0.061 (2) | |
H1 | 0.1682 | 0.1540 | 0.3654 | 0.0577* | |
H2 | 0.1557 | 0.0645 | 0.0730 | 0.0694* | |
H3 | 0.2478 | 0.0473 | −0.2357 | 0.0617* | |
H5AA | 0.3960 | 0.4690 | 0.7760 | 0.0507* | 0.43 |
H5AB | 0.4420 | 0.4910 | 0.4870 | 0.0507* | 0.43 |
H5BB | 0.4680 | 0.5120 | 0.9480 | 0.0507* | 0.57 |
H5BA | 0.3820 | 0.4860 | 1.0380 | 0.0507* | 0.57 |
H8 | 0.5485 | 0.2733 | −0.2048 | 0.0655* | |
H9 | 0.5424 | 0.3581 | 0.1041 | 0.0737* | |
H10 | 0.4389 | 0.3638 | 0.3761 | 0.0615* | |
H11 | 0.3826 | 0.0854 | −0.4180 | 0.0560* | |
H12 | 0.4838 | 0.1635 | −0.4108 | 0.0539* | |
H16A | 0.1997 | 0.4267 | 0.3778 | 0.0508* | |
H16B | 0.1469 | 0.3571 | 0.3685 | 0.0508* | |
H17A | 0.0931 | 0.4203 | 0.9685 | 0.0574* | |
H17B | 0.1539 | 0.4808 | 0.8923 | 0.0574* | |
H18A | 0.0444 | 0.4157 | 0.5566 | 0.0727* | |
H18B | 0.0902 | 0.4878 | 0.5031 | 0.0727* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Pd1 | 0.0331 (2) | 0.0419 (2) | 0.0362 (2) | 0.0063 (2) | 0.0095 (3) | −0.0001 (4) |
O1 | 0.047 (2) | 0.034 (2) | 0.049 (3) | 0.002 (2) | 0.019 (2) | 0.001 (2) |
O2 | 0.053 (2) | 0.055 (2) | 0.055 (3) | −0.006 (2) | 0.032 (4) | 0.001 (4) |
O3 | 0.034 (2) | 0.065 (3) | 0.046 (3) | 0.002 (2) | 0.003 (2) | −0.012 (2) |
O4 | 0.054 (2) | 0.059 (2) | 0.067 (3) | −0.009 (2) | −0.005 (4) | −0.018 (5) |
O5A | 0.057 (9) | 0.09 (1) | 0.36 (4) | −0.013 (8) | −0.05 (2) | 0.08 (2) |
O5B | 0.033 (4) | 0.054 (6) | 0.46 (4) | −0.017 (4) | 0.05 (1) | −0.05 (1) |
N1 | 0.038 (2) | 0.038 (2) | 0.044 (3) | 0.006 (2) | 0.008 (2) | 0.003 (2) |
N2 | 0.033 (2) | 0.047 (3) | 0.038 (3) | 0.003 (2) | 0.008 (2) | 0.000 (2) |
C1 | 0.041 (3) | 0.043 (3) | 0.061 (4) | 0.003 (3) | 0.011 (3) | 0.007 (3) |
C2 | 0.049 (4) | 0.049 (4) | 0.076 (5) | −0.006 (3) | 0.004 (4) | 0.005 (4) |
C3 | 0.055 (4) | 0.035 (3) | 0.064 (5) | 0.004 (3) | 0.002 (3) | −0.002 (3) |
C4 | 0.043 (3) | 0.038 (3) | 0.049 (4) | 0.011 (2) | 0.001 (3) | 0.005 (3) |
C5 | 0.034 (3) | 0.042 (3) | 0.039 (3) | 0.009 (2) | 0.005 (2) | 0.003 (3) |
C6 | 0.032 (3) | 0.035 (3) | 0.040 (3) | 0.004 (2) | 0.006 (2) | −0.002 (3) |
C7 | 0.035 (3) | 0.034 (3) | 0.046 (4) | 0.008 (2) | 0.006 (2) | 0.001 (2) |
C8 | 0.031 (3) | 0.060 (4) | 0.072 (7) | 0.000 (3) | 0.020 (3) | 0.001 (4) |
C9 | 0.042 (3) | 0.064 (4) | 0.078 (5) | −0.008 (3) | 0.019 (4) | −0.011 (4) |
C10 | 0.045 (3) | 0.052 (4) | 0.056 (4) | −0.005 (3) | 0.009 (3) | −0.017 (4) |
C11 | 0.055 (4) | 0.038 (3) | 0.047 (4) | 0.011 (3) | 0.009 (3) | −0.008 (3) |
C12 | 0.044 (3) | 0.049 (3) | 0.042 (3) | 0.016 (3) | 0.009 (3) | −0.001 (3) |
C13 | 0.034 (3) | 0.042 (3) | 0.031 (3) | 0.004 (2) | 0.004 (2) | −0.001 (3) |
C14 | 0.033 (3) | 0.043 (3) | 0.032 (3) | 0.004 (2) | 0.006 (2) | −0.004 (3) |
C15 | 0.046 (3) | 0.039 (3) | 0.034 (3) | −0.003 (2) | −0.001 (3) | −0.001 (3) |
C16 | 0.049 (3) | 0.042 (3) | 0.036 (3) | 0.000 (2) | −0.002 (5) | 0.002 (5) |
C17 | 0.044 (3) | 0.050 (4) | 0.049 (4) | 0.008 (3) | 0.004 (3) | −0.008 (3) |
C18 | 0.057 (4) | 0.060 (4) | 0.065 (5) | 0.014 (3) | −0.004 (4) | 0.008 (4) |
Geometric parameters (Å, º) top
Pd1—O1 | 2.003 (4) | C5—C6 | 1.426 (8) |
Pd1—O3 | 2.005 (4) | C6—C7 | 1.400 (8) |
Pd1—N1 | 1.991 (5) | C7—C8 | 1.413 (8) |
Pd1—N2 | 1.994 (5) | C7—C12 | 1.424 (9) |
O1—C13 | 1.281 (7) | C8—C9 | 1.36 (1) |
O2—C13 | 1.218 (8) | C8—H8 | 0.930 |
O3—C15 | 1.295 (7) | C9—C10 | 1.38 (1) |
O4—C15 | 1.255 (10) | C9—H9 | 0.930 |
O5A—H5AA | 1.067 | C10—H10 | 0.930 |
O5A—H5AB | 1.058 | C11—C12 | 1.366 (8) |
O5B—H5BB | 0.991 | C11—H11 | 0.930 |
O5B—H5BA | 0.924 | C12—H12 | 0.930 |
N1—C1 | 1.330 (7) | C13—C14 | 1.548 (8) |
N1—C5 | 1.358 (8) | C14—C15 | 1.528 (8) |
N2—C6 | 1.350 (8) | C14—C16 | 1.56 (1) |
N2—C10 | 1.329 (8) | C14—C17 | 1.548 (9) |
C1—C2 | 1.38 (1) | C16—C18 | 1.519 (9) |
C1—H1 | 0.930 | C16—H16A | 0.970 |
C2—C3 | 1.36 (1) | C16—H16B | 0.970 |
C2—H2 | 0.930 | C17—C18 | 1.54 (1) |
C3—C4 | 1.415 (9) | C17—H17A | 0.970 |
C3—H3 | 0.930 | C17—H17B | 0.970 |
C4—C5 | 1.392 (9) | C18—H18A | 0.970 |
C4—C11 | 1.439 (9) | C18—H18B | 0.970 |
| | | |
Pd1···C11i | 3.515 (6) | O3···C7i | 3.421 (7) |
Pd1···C12i | 3.549 (6) | O4···C2iv | 3.56 (1) |
Pd1···C4i | 3.556 (6) | O4···C16i | 3.58 (1) |
O1···C5i | 3.203 (7) | O4···C3v | 3.592 (10) |
O1···C4i | 3.324 (7) | O5A···O5Bvi | 2.99 (3) |
O1···N1i | 3.338 (7) | O5A···O5Bvii | 3.24 (5) |
O1···C3i | 3.503 (8) | O5A···C2iv | 3.38 (2) |
O1···C1i | 3.527 (9) | O5B···O5Bvi | 2.53 (2) |
O2···C8ii | 3.208 (10) | O5B···C9viii | 3.35 (1) |
O2···C12ii | 3.243 (8) | O5B···C10i | 3.55 (1) |
O2···C9iii | 3.463 (10) | N1···C11i | 3.417 (8) |
O2···C16i | 3.48 (1) | N1···C13vii | 3.582 (8) |
O2···C1i | 3.502 (8) | N2···C12i | 3.401 (8) |
O3···C6i | 3.260 (7) | C16···C17vii | 3.44 (1) |
O3···N2i | 3.399 (7) | | |
| | | |
O1—Pd1—O3 | 91.3 (2) | C8—C9—H9 | 119.4 |
O1—Pd1—N1 | 93.0 (2) | C10—C9—H9 | 119.4 |
O1—Pd1—N2 | 173.2 (2) | N2—C10—C9 | 121.4 (7) |
O3—Pd1—N1 | 174.7 (2) | N2—C10—H10 | 119.3 |
O3—Pd1—N2 | 93.2 (2) | C9—C10—H10 | 119.3 |
N1—Pd1—N2 | 82.2 (2) | C4—C11—C12 | 121.1 (6) |
Pd1—O1—C13 | 121.9 (4) | C4—C11—H11 | 119.5 |
Pd1—O3—C15 | 120.7 (4) | C12—C11—H11 | 119.4 |
H5AA—O5A—H5AB | 112.3 | C7—C12—C11 | 120.8 (6) |
H5BB—O5B—H5BA | 116.8 | C7—C12—H12 | 119.6 |
Pd1—N1—C1 | 128.7 (5) | C11—C12—H12 | 119.6 |
Pd1—N1—C5 | 112.9 (4) | O1—C13—O2 | 122.7 (5) |
C1—N1—C5 | 118.5 (5) | O1—C13—C14 | 116.8 (5) |
Pd1—N2—C6 | 112.7 (4) | O2—C13—C14 | 120.4 (5) |
Pd1—N2—C10 | 128.6 (5) | C13—C14—C15 | 111.2 (5) |
C6—N2—C10 | 118.7 (5) | C13—C14—C16 | 109.6 (4) |
N1—C1—C2 | 121.2 (6) | C13—C14—C17 | 114.7 (5) |
N1—C1—H1 | 119.4 | C15—C14—C16 | 114.8 (5) |
C2—C1—H1 | 119.4 | C15—C14—C17 | 116.2 (5) |
C1—C2—C3 | 121.3 (6) | C16—C14—C17 | 88.4 (4) |
C1—C2—H2 | 119.4 | O3—C15—O4 | 121.9 (5) |
C3—C2—H2 | 119.4 | O3—C15—C14 | 117.9 (5) |
C2—C3—C4 | 118.7 (6) | O4—C15—C14 | 120.2 (5) |
C2—C3—H3 | 120.7 | C14—C16—C18 | 89.4 (6) |
C4—C3—H3 | 120.7 | C14—C16—H16A | 113.8 |
C3—C4—C5 | 116.7 (6) | C14—C16—H16B | 113.7 |
C3—C4—C11 | 124.9 (6) | C18—C16—H16A | 113.7 |
C5—C4—C11 | 118.4 (5) | C18—C16—H16B | 113.7 |
N1—C5—C4 | 123.6 (5) | H16A—C16—H16B | 111.0 |
N1—C5—C6 | 115.8 (5) | C14—C17—C18 | 89.1 (5) |
C4—C5—C6 | 120.5 (5) | C14—C17—H17A | 113.8 |
N2—C6—C5 | 116.4 (5) | C14—C17—H17B | 113.8 |
N2—C6—C7 | 123.3 (5) | C18—C17—H17A | 113.8 |
C5—C6—C7 | 120.3 (5) | C18—C17—H17B | 113.8 |
C6—C7—C8 | 116.4 (5) | H17A—C17—H17B | 111.0 |
C6—C7—C12 | 118.9 (5) | C16—C18—C17 | 90.2 (6) |
C8—C7—C12 | 124.7 (6) | C16—C18—H18A | 113.6 |
C7—C8—C9 | 119.0 (6) | C16—C18—H18B | 113.6 |
C7—C8—H8 | 120.5 | C17—C18—H18A | 113.6 |
C9—C8—H8 | 120.5 | C17—C18—H18B | 113.6 |
C8—C9—C10 | 121.2 (6) | H18A—C18—H18B | 110.9 |
| | | |
Pd1—O1—C13—O2 | −174.8 (5) | N2—Pd1—N1—C1 | −178.9 (6) |
Pd1—O1—C13—C14 | 6.9 (7) | N2—Pd1—N1—C5 | 0.8 (4) |
Pd1—O3—C15—O4 | 175.7 (6) | N2—C6—C5—C4 | 178.8 (5) |
Pd1—O3—C15—C14 | −6.7 (7) | N2—C6—C7—C8 | 0.5 (9) |
Pd1—N1—C1—C2 | 178.7 (5) | N2—C6—C7—C12 | −179.3 (5) |
Pd1—N1—C5—C4 | −179.9 (5) | N2—C10—C9—C8 | 1 (1) |
Pd1—N1—C5—C6 | −0.2 (7) | C1—N1—C5—C4 | −0.2 (9) |
Pd1—N2—C6—C5 | 1.5 (6) | C1—N1—C5—C6 | 179.5 (6) |
Pd1—N2—C6—C7 | −179.4 (4) | C1—C2—C3—C4 | 1 (1) |
Pd1—N2—C10—C9 | 178.4 (5) | C2—C1—N1—C5 | −0.9 (9) |
O1—Pd1—O3—C15 | −33.3 (5) | C2—C3—C4—C5 | −2.4 (9) |
O1—Pd1—N1—C1 | 6.0 (6) | C2—C3—C4—C11 | 179.0 (7) |
O1—Pd1—N1—C5 | −174.3 (4) | C3—C4—C5—C6 | −177.8 (6) |
O1—C13—C14—C15 | −60.0 (7) | C3—C4—C11—C12 | 177.7 (6) |
O1—C13—C14—C16 | 68.1 (6) | C4—C5—C6—C7 | −0.3 (9) |
O1—C13—C14—C17 | 165.7 (5) | C4—C11—C12—C7 | 0.3 (10) |
O2—C13—C14—C15 | 121.7 (7) | C5—C4—C11—C12 | −0.9 (9) |
O2—C13—C14—C16 | −110.2 (7) | C5—C6—N2—C10 | −179.3 (6) |
O2—C13—C14—C17 | −12.6 (8) | C5—C6—C7—C8 | 179.6 (6) |
O3—Pd1—O1—C13 | 33.2 (5) | C5—C6—C7—C12 | −0.2 (8) |
O3—Pd1—N2—C6 | 176.1 (4) | C6—N2—C10—C9 | −0.7 (10) |
O3—Pd1—N2—C10 | −3.0 (6) | C6—C5—C4—C11 | 0.9 (9) |
O3—C15—C14—C13 | 59.9 (7) | C6—C7—C8—C9 | 0.1 (9) |
O3—C15—C14—C16 | −65.3 (7) | C6—C7—C12—C11 | 0.2 (9) |
O3—C15—C14—C17 | −166.5 (5) | C7—C6—N2—C10 | −0.2 (9) |
O4—C15—C14—C13 | −122.4 (7) | C7—C8—C9—C10 | 0 (1) |
O4—C15—C14—C16 | 112.4 (7) | C8—C7—C12—C11 | −179.6 (6) |
O4—C15—C14—C17 | 11.2 (9) | C9—C8—C7—C12 | 179.9 (6) |
N1—Pd1—O1—C13 | −149.9 (5) | C13—C14—C16—C18 | 103.0 (5) |
N1—Pd1—N2—C6 | −1.2 (4) | C13—C14—C17—C18 | −98.4 (6) |
N1—Pd1—N2—C10 | 179.7 (6) | C14—C16—C18—C17 | 12.8 (5) |
N1—C1—C2—C3 | 0 (1) | C14—C17—C18—C16 | −12.9 (5) |
N1—C5—C4—C3 | 1.8 (9) | C15—C14—C16—C18 | −131.0 (5) |
N1—C5—C4—C11 | −179.5 (6) | C15—C14—C17—C18 | 129.6 (5) |
N1—C5—C6—N2 | −0.8 (8) | C16—C14—C17—C18 | 12.5 (4) |
N1—C5—C6—C7 | 180.0 (5) | C17—C14—C16—C18 | −12.7 (5) |
N2—Pd1—O3—C15 | 151.8 (5) | C17—C14—C16—C18 | −12.7 (5) |
Symmetry codes: (i) x, y, z+1; (ii) x−1/2, −y+1/2, z+3/2; (iii) x−1/2, −y+1/2, z+1/2; (iv) −x+1/2, y+1/2, z+1/2; (v) −x+1/2, y+1/2, z+3/2; (vi) −x+1, −y+1, z; (vii) x, y, z−1; (viii) −x+1, −y+1, z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O5A—H5AA···O4 | 1.07 | 2.11 | 3.17 (2) | 177 |
O5B—H5BA···O4 | 0.92 | 1.83 | 2.753 (12) | 179 |
O5A—H5AB···O5Bvii | 1.06 | 2.18 | 3.24 (4) | 179 |
O5B—H5BB···O5Avi | 0.99 | 1.99 | 2.99 (3) | 179 |
Symmetry codes: (vi) −x+1, −y+1, z; (vii) x, y, z−1. |
(IIb) (1,1-cyclobutanedicarboxylato-
κ2O,
O') (1,10-phenanthroline-
κ2N,
N')palladium(II) dihydrate
top
Crystal data top
[Pd(C6H6O4)(C12H8N2)]·2H2O | Z = 4 |
Mr = 464.76 | F(000) = 936.0 |
Triclinic, P1 | Dx = 1.740 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.7107 Å |
a = 11.079 (2) Å | Cell parameters from 25 reflections |
b = 11.826 (3) Å | θ = 14.3–15.0° |
c = 13.678 (4) Å | µ = 1.09 mm−1 |
α = 85.50 (2)° | T = 296 K |
β = 84.55 (2)° | Plate, pale yellow |
γ = 85.87 (2)° | 0.20 × 0.20 × 0.10 mm |
V = 1774.7 (8) Å3 | |
Data collection top
Rigaku AFC-5R diffractometer | Rint = 0.033 |
ω/2θ scans | θmax = 27.5° |
Absorption correction: ψ scan (North et al., 1968) | h = −14→14 |
Tmin = 0.777, Tmax = 0.897 | k = −15→0 |
8545 measured reflections | l = −17→17 |
8164 independent reflections | 3 standard reflections every 150 reflections |
5125 reflections with I > 2σ(I) | intensity decay: 2.1% |
Refinement top
Refinement on F2 | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.040 | w = 1/[σ2(Fo2) + (0.0563P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.118 | (Δ/σ)max = 0.001 |
S = 0.99 | Δρmax = 0.44 e Å−3 |
8164 reflections | Δρmin = −0.79 e Å−3 |
487 parameters | |
Crystal data top
[Pd(C6H6O4)(C12H8N2)]·2H2O | γ = 85.87 (2)° |
Mr = 464.76 | V = 1774.7 (8) Å3 |
Triclinic, P1 | Z = 4 |
a = 11.079 (2) Å | Mo Kα radiation |
b = 11.826 (3) Å | µ = 1.09 mm−1 |
c = 13.678 (4) Å | T = 296 K |
α = 85.50 (2)° | 0.20 × 0.20 × 0.10 mm |
β = 84.55 (2)° | |
Data collection top
Rigaku AFC-5R diffractometer | 5125 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.033 |
Tmin = 0.777, Tmax = 0.897 | 3 standard reflections every 150 reflections |
8545 measured reflections | intensity decay: 2.1% |
8164 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.040 | 487 parameters |
wR(F2) = 0.118 | H-atom parameters constrained |
S = 0.99 | Δρmax = 0.44 e Å−3 |
8164 reflections | Δρmin = −0.79 e Å−3 |
Special details top
Refinement. Refinement using reflections with F2 > −10.0 σ(F2). The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Pd1 | 0.04535 (3) | 0.85131 (3) | 0.36336 (2) | 0.0395 (1) | |
Pd2 | 0.34336 (3) | 0.35543 (3) | 0.05109 (2) | 0.0408 (1) | |
O1 | −0.1010 (3) | 0.7652 (3) | 0.3516 (2) | 0.0511 (8) | |
O2 | −0.1815 (3) | 0.6119 (3) | 0.3141 (3) | 0.067 (1) | |
O3 | 0.1535 (3) | 0.7106 (3) | 0.3728 (3) | 0.0503 (8) | |
O4 | 0.1748 (3) | 0.5257 (3) | 0.3620 (3) | 0.067 (1) | |
O5 | 0.3002 (3) | 0.2596 (3) | −0.0527 (2) | 0.0524 (8) | |
O6 | 0.2367 (4) | 0.0972 (4) | −0.0899 (3) | 0.077 (1) | |
O7 | 0.3823 (3) | 0.2200 (3) | 0.1418 (2) | 0.0538 (8) | |
O8 | 0.3703 (4) | 0.0364 (3) | 0.1744 (3) | 0.070 (1) | |
O9 | 0.6031 (4) | 0.9823 (5) | 0.2395 (3) | 0.109 (2) | |
O10 | 0.3868 (4) | 0.2139 (4) | 0.6254 (4) | 0.095 (1) | |
O11 | 0.5400 (4) | 0.2996 (4) | 0.4579 (4) | 0.090 (1) | |
O12 | 0.6941 (4) | 0.4773 (4) | 0.4684 (3) | 0.087 (1) | |
N1 | −0.0506 (3) | 1.0013 (3) | 0.3657 (3) | 0.0414 (8) | |
N2 | 0.1821 (3) | 0.9481 (3) | 0.3820 (3) | 0.0428 (8) | |
N3 | 0.3197 (3) | 0.4993 (3) | −0.0341 (3) | 0.0454 (9) | |
N4 | 0.3893 (3) | 0.4640 (3) | 0.1449 (3) | 0.0444 (9) | |
C1 | −0.1683 (5) | 1.0236 (5) | 0.3598 (3) | 0.052 (1) | |
C2 | −0.2233 (5) | 1.1334 (5) | 0.3698 (4) | 0.058 (1) | |
C3 | −0.1551 (5) | 1.2198 (5) | 0.3854 (4) | 0.060 (1) | |
C4 | −0.0290 (5) | 1.2007 (4) | 0.3885 (3) | 0.050 (1) | |
C5 | 0.0184 (4) | 1.0881 (4) | 0.3798 (3) | 0.0417 (10) | |
C6 | 0.1446 (4) | 1.0595 (4) | 0.3874 (3) | 0.0409 (9) | |
C7 | 0.2966 (4) | 0.9163 (4) | 0.3923 (4) | 0.051 (1) | |
C8 | 0.3794 (5) | 0.9944 (5) | 0.4081 (4) | 0.059 (1) | |
C9 | 0.3451 (5) | 1.1066 (5) | 0.4110 (4) | 0.060 (1) | |
C10 | 0.2232 (5) | 1.1429 (4) | 0.4017 (4) | 0.051 (1) | |
C11 | 0.1737 (6) | 1.2568 (4) | 0.4072 (4) | 0.060 (1) | |
C12 | 0.0541 (6) | 1.2852 (4) | 0.4016 (4) | 0.060 (1) | |
C13 | −0.0926 (4) | 0.6677 (4) | 0.3125 (3) | 0.046 (1) | |
C14 | 0.1258 (4) | 0.6183 (4) | 0.3380 (4) | 0.046 (1) | |
C15 | 0.0301 (4) | 0.6291 (4) | 0.2635 (3) | 0.044 (1) | |
C16 | 0.0600 (4) | 0.7053 (4) | 0.1665 (4) | 0.052 (1) | |
C17 | 0.0205 (5) | 0.6099 (5) | 0.1085 (4) | 0.068 (2) | |
C18 | 0.0290 (5) | 0.5278 (5) | 0.2004 (4) | 0.062 (1) | |
C21 | 0.2856 (4) | 0.5111 (5) | −0.1248 (4) | 0.058 (1) | |
C22 | 0.2755 (6) | 0.6187 (6) | −0.1757 (5) | 0.076 (2) | |
C23 | 0.2995 (5) | 0.7142 (6) | −0.1312 (5) | 0.075 (2) | |
C24 | 0.3357 (4) | 0.7033 (5) | −0.0356 (5) | 0.061 (1) | |
C25 | 0.3435 (4) | 0.5931 (4) | 0.0098 (4) | 0.046 (1) | |
C26 | 0.3819 (4) | 0.5737 (4) | 0.1066 (4) | 0.046 (1) | |
C27 | 0.4249 (4) | 0.4414 (5) | 0.2341 (4) | 0.055 (1) | |
C28 | 0.4568 (5) | 0.5273 (6) | 0.2902 (4) | 0.071 (2) | |
C29 | 0.4512 (5) | 0.6370 (5) | 0.2524 (5) | 0.071 (2) | |
C30 | 0.4125 (5) | 0.6634 (5) | 0.1580 (4) | 0.059 (1) | |
C31 | 0.4022 (5) | 0.7762 (5) | 0.1099 (5) | 0.073 (2) | |
C32 | 0.3648 (5) | 0.7946 (5) | 0.0190 (5) | 0.073 (2) | |
C33 | 0.2530 (4) | 0.1631 (4) | −0.0300 (4) | 0.051 (1) | |
C34 | 0.3308 (5) | 0.1264 (4) | 0.1355 (4) | 0.050 (1) | |
C35 | 0.2166 (4) | 0.1338 (4) | 0.0802 (3) | 0.047 (1) | |
C36 | 0.1091 (4) | 0.2131 (4) | 0.1203 (4) | 0.052 (1) | |
C37 | 0.0239 (5) | 0.1207 (5) | 0.1066 (5) | 0.072 (2) | |
C38 | 0.1333 (5) | 0.0340 (5) | 0.0995 (5) | 0.066 (1) | |
H1 | −0.2160 | 0.9652 | 0.3486 | 0.0630* | |
H2 | −0.3065 | 1.1468 | 0.3658 | 0.0699* | |
H3 | −0.1919 | 1.2919 | 0.3941 | 0.0719* | |
H7 | 0.3227 | 0.8401 | 0.3888 | 0.0609* | |
H8 | 0.4595 | 0.9694 | 0.4168 | 0.0712* | |
H9 | 0.4016 | 1.1587 | 0.4191 | 0.0724* | |
H9A | 0.6578 | 0.9540 | 0.1890 | 0.1307* | |
H9B | 0.5267 | 0.9980 | 0.2197 | 0.1307* | |
H10A | 0.3269 | 0.2579 | 0.6312 | 0.1142* | |
H10B | 0.3904 | 0.1519 | 0.6636 | 0.1142* | |
H11 | 0.2252 | 1.3135 | 0.4148 | 0.0721* | |
H11A | 0.4958 | 0.2784 | 0.5055 | 0.1071* | |
H11B | 0.5803 | 0.3522 | 0.4633 | 0.1071* | |
H12 | 0.0250 | 1.3605 | 0.4064 | 0.0726* | |
H12A | 0.7380 | 0.4990 | 0.4212 | 0.1032* | |
H12B | 0.7453 | 0.4699 | 0.5066 | 0.1032* | |
H16A | 0.0089 | 0.7753 | 0.1611 | 0.0626* | |
H16B | 0.1453 | 0.7199 | 0.1534 | 0.0626* | |
H17A | −0.0611 | 0.6233 | 0.0881 | 0.0814* | |
H17B | 0.0781 | 0.5901 | 0.0536 | 0.0814* | |
H18A | 0.1034 | 0.4791 | 0.1991 | 0.0745* | |
H18B | −0.0416 | 0.4836 | 0.2161 | 0.0745* | |
H21 | 0.2681 | 0.4472 | −0.1551 | 0.0697* | |
H22 | 0.2525 | 0.6255 | −0.2396 | 0.0908* | |
H23 | 0.2916 | 0.7856 | −0.1646 | 0.0902* | |
H27 | 0.4289 | 0.3665 | 0.2606 | 0.0659* | |
H28 | 0.4817 | 0.5092 | 0.3529 | 0.0853* | |
H29 | 0.4728 | 0.6944 | 0.2889 | 0.0849* | |
H31 | 0.4220 | 0.8375 | 0.1425 | 0.0875* | |
H32 | 0.3575 | 0.8686 | −0.0092 | 0.0874* | |
H36A | 0.1123 | 0.2293 | 0.1884 | 0.0618* | |
H36B | 0.0953 | 0.2824 | 0.0789 | 0.0618* | |
H37A | −0.0170 | 0.1331 | 0.0467 | 0.0868* | |
H37B | −0.0337 | 0.1054 | 0.1633 | 0.0868* | |
H38A | 0.1352 | −0.0135 | 0.0446 | 0.0794* | |
H38B | 0.1449 | −0.0115 | 0.1604 | 0.0794* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Pd1 | 0.0415 (2) | 0.0334 (2) | 0.0452 (2) | −0.0063 (1) | −0.0090 (2) | −0.0022 (1) |
Pd2 | 0.0435 (2) | 0.0379 (2) | 0.0422 (2) | −0.0088 (1) | −0.0056 (2) | −0.0034 (2) |
O1 | 0.038 (2) | 0.060 (2) | 0.058 (2) | −0.009 (1) | −0.007 (1) | −0.008 (2) |
O2 | 0.055 (2) | 0.080 (3) | 0.071 (3) | −0.035 (2) | 0.000 (2) | −0.011 (2) |
O3 | 0.051 (2) | 0.035 (2) | 0.068 (2) | −0.002 (1) | −0.021 (2) | −0.005 (2) |
O4 | 0.077 (3) | 0.032 (2) | 0.098 (3) | −0.004 (2) | −0.043 (2) | 0.001 (2) |
O5 | 0.062 (2) | 0.057 (2) | 0.040 (2) | −0.016 (2) | −0.003 (1) | −0.009 (2) |
O6 | 0.097 (3) | 0.078 (3) | 0.063 (2) | −0.033 (2) | 0.005 (2) | −0.034 (2) |
O7 | 0.066 (2) | 0.042 (2) | 0.057 (2) | −0.012 (2) | −0.022 (2) | 0.000 (2) |
O8 | 0.080 (3) | 0.042 (2) | 0.092 (3) | 0.000 (2) | −0.034 (2) | 0.002 (2) |
O9 | 0.068 (3) | 0.189 (6) | 0.075 (3) | 0.013 (3) | −0.016 (2) | −0.047 (3) |
O10 | 0.070 (3) | 0.099 (4) | 0.121 (4) | −0.004 (3) | −0.008 (3) | −0.032 (3) |
O11 | 0.083 (3) | 0.087 (3) | 0.103 (4) | −0.031 (2) | 0.001 (3) | −0.019 (3) |
O12 | 0.084 (3) | 0.105 (3) | 0.076 (3) | −0.048 (3) | −0.026 (2) | 0.026 (2) |
N1 | 0.049 (2) | 0.038 (2) | 0.038 (2) | −0.005 (2) | −0.008 (2) | 0.001 (2) |
N2 | 0.045 (2) | 0.038 (2) | 0.047 (2) | −0.007 (2) | −0.009 (2) | −0.005 (2) |
N3 | 0.039 (2) | 0.044 (2) | 0.054 (2) | −0.010 (2) | −0.003 (2) | 0.004 (2) |
N4 | 0.041 (2) | 0.044 (2) | 0.050 (2) | −0.008 (2) | −0.005 (2) | −0.009 (2) |
C1 | 0.054 (3) | 0.058 (3) | 0.045 (3) | −0.001 (2) | −0.006 (2) | −0.002 (2) |
C2 | 0.055 (3) | 0.064 (3) | 0.053 (3) | 0.012 (3) | −0.008 (2) | 0.002 (3) |
C3 | 0.081 (4) | 0.048 (3) | 0.048 (3) | 0.016 (3) | −0.009 (3) | −0.004 (2) |
C4 | 0.075 (3) | 0.036 (2) | 0.037 (2) | 0.002 (2) | −0.007 (2) | −0.001 (2) |
C5 | 0.055 (3) | 0.035 (2) | 0.035 (2) | −0.002 (2) | −0.008 (2) | 0.003 (2) |
C6 | 0.054 (3) | 0.036 (2) | 0.033 (2) | −0.009 (2) | −0.005 (2) | 0.000 (2) |
C7 | 0.047 (3) | 0.052 (3) | 0.055 (3) | −0.002 (2) | −0.010 (2) | −0.006 (2) |
C8 | 0.047 (3) | 0.075 (4) | 0.060 (3) | −0.013 (3) | −0.012 (2) | −0.008 (3) |
C9 | 0.064 (3) | 0.065 (3) | 0.057 (3) | −0.030 (3) | −0.008 (3) | −0.004 (3) |
C10 | 0.068 (3) | 0.043 (3) | 0.046 (3) | −0.015 (2) | −0.010 (2) | −0.003 (2) |
C11 | 0.087 (4) | 0.042 (3) | 0.055 (3) | −0.022 (3) | −0.013 (3) | −0.005 (2) |
C12 | 0.096 (4) | 0.032 (2) | 0.053 (3) | −0.007 (3) | −0.007 (3) | −0.002 (2) |
C13 | 0.043 (2) | 0.049 (3) | 0.046 (3) | −0.015 (2) | −0.010 (2) | 0.003 (2) |
C14 | 0.046 (2) | 0.036 (2) | 0.058 (3) | −0.011 (2) | −0.011 (2) | 0.002 (2) |
C15 | 0.048 (2) | 0.038 (2) | 0.048 (3) | −0.009 (2) | −0.011 (2) | 0.000 (2) |
C16 | 0.045 (3) | 0.055 (3) | 0.056 (3) | −0.009 (2) | −0.003 (2) | 0.001 (2) |
C17 | 0.056 (3) | 0.087 (4) | 0.063 (4) | −0.010 (3) | −0.001 (3) | −0.023 (3) |
C18 | 0.061 (3) | 0.056 (3) | 0.075 (4) | −0.009 (3) | −0.017 (3) | −0.019 (3) |
C21 | 0.050 (3) | 0.066 (3) | 0.060 (3) | −0.014 (2) | −0.014 (2) | 0.005 (3) |
C22 | 0.077 (4) | 0.082 (4) | 0.066 (4) | −0.009 (3) | −0.024 (3) | 0.026 (3) |
C23 | 0.061 (3) | 0.071 (4) | 0.089 (5) | −0.004 (3) | −0.012 (3) | 0.032 (4) |
C24 | 0.043 (3) | 0.048 (3) | 0.088 (4) | −0.006 (2) | 0.002 (3) | 0.010 (3) |
C25 | 0.035 (2) | 0.043 (3) | 0.059 (3) | −0.005 (2) | 0.001 (2) | 0.001 (2) |
C26 | 0.039 (2) | 0.046 (3) | 0.055 (3) | −0.007 (2) | −0.001 (2) | −0.011 (2) |
C27 | 0.053 (3) | 0.065 (3) | 0.048 (3) | −0.009 (2) | −0.009 (2) | −0.003 (2) |
C28 | 0.070 (4) | 0.093 (5) | 0.056 (3) | −0.015 (3) | −0.014 (3) | −0.025 (3) |
C29 | 0.063 (3) | 0.071 (4) | 0.085 (4) | −0.012 (3) | −0.008 (3) | −0.037 (3) |
C30 | 0.047 (3) | 0.056 (3) | 0.077 (4) | −0.014 (2) | 0.006 (3) | −0.025 (3) |
C31 | 0.059 (3) | 0.045 (3) | 0.115 (5) | −0.012 (3) | 0.007 (3) | −0.022 (3) |
C32 | 0.063 (4) | 0.039 (3) | 0.113 (5) | −0.005 (2) | 0.008 (3) | 0.002 (3) |
C33 | 0.046 (3) | 0.056 (3) | 0.055 (3) | −0.007 (2) | −0.001 (2) | −0.020 (2) |
C34 | 0.061 (3) | 0.040 (3) | 0.050 (3) | −0.004 (2) | −0.009 (2) | −0.006 (2) |
C35 | 0.057 (3) | 0.037 (2) | 0.047 (3) | −0.012 (2) | −0.004 (2) | −0.003 (2) |
C36 | 0.050 (3) | 0.062 (3) | 0.043 (3) | −0.006 (2) | −0.004 (2) | −0.003 (2) |
C37 | 0.062 (3) | 0.091 (5) | 0.066 (4) | −0.028 (3) | −0.007 (3) | 0.007 (3) |
C38 | 0.083 (4) | 0.050 (3) | 0.069 (4) | −0.025 (3) | −0.007 (3) | −0.002 (3) |
Geometric parameters (Å, º) top
Pd1—O1 | 2.001 (3) | C10—C11 | 1.423 (7) |
Pd1—O3 | 1.982 (3) | C11—C12 | 1.350 (9) |
Pd1—N1 | 2.002 (4) | C11—H11 | 0.930 |
Pd1—N2 | 2.010 (4) | C12—H12 | 0.930 |
Pd2—O5 | 1.997 (4) | C13—C15 | 1.513 (6) |
Pd2—O7 | 1.995 (3) | C14—C15 | 1.530 (7) |
Pd2—N3 | 2.001 (4) | C15—C16 | 1.566 (6) |
Pd2—N4 | 2.007 (4) | C15—C18 | 1.532 (7) |
O1—C13 | 1.302 (6) | C16—C17 | 1.541 (8) |
O2—C13 | 1.223 (6) | C16—H16A | 0.970 |
O3—C14 | 1.293 (6) | C16—H16B | 0.970 |
O4—C14 | 1.222 (5) | C17—C18 | 1.532 (8) |
O5—C33 | 1.293 (6) | C17—H17A | 0.970 |
O6—C33 | 1.208 (7) | C17—H17B | 0.970 |
O7—C34 | 1.294 (6) | C18—H18A | 0.970 |
O8—C34 | 1.223 (6) | C18—H18B | 0.970 |
O9—H9A | 0.940 | C21—C22 | 1.404 (8) |
O9—H9B | 0.915 | C21—H21 | 0.930 |
O10—H10A | 0.815 | C22—C23 | 1.378 (10) |
O10—H10B | 0.867 | C22—H22 | 0.930 |
O11—H11A | 0.811 | C23—C24 | 1.398 (9) |
O11—H11B | 0.803 | C23—H23 | 0.930 |
O12—H12A | 0.807 | C24—C25 | 1.399 (7) |
O12—H12B | 0.803 | C24—C32 | 1.431 (9) |
N1—C1 | 1.320 (6) | C25—C26 | 1.425 (7) |
N1—C5 | 1.359 (6) | C26—C30 | 1.396 (8) |
N2—C6 | 1.357 (6) | C27—C28 | 1.404 (9) |
N2—C7 | 1.314 (6) | C27—H27 | 0.930 |
N3—C21 | 1.325 (7) | C28—C29 | 1.357 (9) |
N3—C25 | 1.355 (6) | C28—H28 | 0.930 |
N4—C26 | 1.361 (6) | C29—C30 | 1.404 (9) |
N4—C27 | 1.320 (6) | C29—H29 | 0.930 |
C1—C2 | 1.405 (8) | C30—C31 | 1.442 (8) |
C1—H1 | 0.930 | C31—C32 | 1.35 (1) |
C2—C3 | 1.356 (8) | C31—H31 | 0.930 |
C2—H2 | 0.930 | C32—H32 | 0.930 |
C3—C4 | 1.403 (8) | C33—C35 | 1.541 (7) |
C3—H3 | 0.930 | C34—C35 | 1.529 (7) |
C4—C5 | 1.406 (6) | C35—C36 | 1.547 (6) |
C4—C12 | 1.439 (8) | C35—C38 | 1.541 (7) |
C5—C6 | 1.426 (6) | C36—C37 | 1.528 (8) |
C6—C10 | 1.399 (7) | C36—H36A | 0.970 |
C7—C8 | 1.391 (8) | C36—H36B | 0.970 |
C7—H7 | 0.930 | C37—C38 | 1.531 (8) |
C8—C9 | 1.356 (8) | C37—H37A | 0.970 |
C8—H8 | 0.930 | C37—H37B | 0.970 |
C9—C10 | 1.401 (7) | C38—H38A | 0.970 |
C9—H9 | 0.930 | C38—H38B | 0.970 |
| | | |
Pd1···C4i | 3.392 (4) | O8···N2vii | 3.496 (5) |
Pd1···C12i | 3.595 (5) | O9···O10vi | 2.853 (7) |
Pd2···C24ii | 3.562 (5) | O9···C1viii | 3.233 (7) |
Pd2···C25ii | 3.574 (4) | O9···C2viii | 3.423 (8) |
O1···O10iii | 3.146 (5) | O10···C29vi | 3.258 (8) |
O1···C11i | 3.316 (6) | O10···C9vii | 3.368 (8) |
O1···C12i | 3.463 (6) | O10···C8vi | 3.466 (7) |
O2···O12iv | 2.850 (6) | O10···C13iii | 3.509 (6) |
O2···O10iii | 3.056 (6) | O11···C2ix | 3.350 (7) |
O2···C21v | 3.398 (7) | O11···C9vii | 3.390 (8) |
O3···O12vi | 3.451 (5) | O11···C3ix | 3.513 (7) |
O3···C3i | 3.472 (6) | O12···C14vi | 3.533 (7) |
O4···O12vi | 2.848 (6) | O12···C28vi | 3.555 (7) |
O4···C11vii | 3.192 (6) | O12···C3ix | 3.578 (7) |
O4···C12vii | 3.216 (6) | N1···C6i | 3.474 (5) |
O5···C31ii | 3.320 (7) | N2···C2i | 3.518 (6) |
O5···C30ii | 3.518 (6) | N2···C1i | 3.562 (6) |
O6···O9ii | 2.756 (6) | N3···C26ii | 3.429 (6) |
O7···C32ii | 3.397 (7) | N3···N4ii | 3.471 (5) |
O7···C24ii | 3.468 (6) | N4···C25ii | 3.526 (6) |
O8···O9vii | 2.822 (6) | C1···C6i | 3.549 (6) |
O8···C8vii | 3.206 (7) | C2···C7i | 3.296 (7) |
O8···C31vii | 3.253 (7) | C21···C27ii | 3.473 (7) |
O8···C7vii | 3.256 (6) | C21···C28ii | 3.496 (7) |
O8···C9vii | 3.385 (7) | C22···C27ii | 3.378 (8) |
| | | |
O1—Pd1—O3 | 92.8 (1) | C15—C16—H16B | 113.9 |
O1—Pd1—N1 | 93.3 (1) | C17—C16—H16A | 113.9 |
O1—Pd1—N2 | 174.7 (1) | C17—C16—H16B | 113.9 |
O3—Pd1—N1 | 172.7 (2) | H16A—C16—H16B | 111.1 |
O3—Pd1—N2 | 91.6 (1) | C16—C17—C18 | 89.3 (4) |
N1—Pd1—N2 | 82.1 (1) | C16—C17—H17A | 113.8 |
O5—Pd2—O7 | 92.6 (1) | C16—C17—H17B | 113.8 |
O5—Pd2—N3 | 92.7 (2) | C18—C17—H17A | 113.8 |
O5—Pd2—N4 | 174.4 (1) | C18—C17—H17B | 113.8 |
O7—Pd2—N3 | 173.5 (2) | H17A—C17—H17B | 111.0 |
O7—Pd2—N4 | 92.7 (1) | C15—C18—C17 | 89.8 (4) |
N3—Pd2—N4 | 82.0 (2) | C15—C18—H18A | 113.7 |
Pd1—O1—C13 | 121.8 (3) | C15—C18—H18B | 113.7 |
Pd1—O3—C14 | 121.1 (3) | C17—C18—H18A | 113.7 |
Pd2—O5—C33 | 121.3 (3) | C17—C18—H18B | 113.7 |
Pd2—O7—C34 | 119.8 (3) | H18A—C18—H18B | 110.9 |
H9A—O9—H9B | 112.0 | N3—C21—C22 | 120.8 (5) |
H10A—O10—H10B | 119.2 | N3—C21—H21 | 119.6 |
H11A—O11—H11B | 117.7 | C22—C21—H21 | 119.6 |
H12A—O12—H12B | 96.4 | C21—C22—C23 | 120.3 (6) |
Pd1—N1—C1 | 128.9 (3) | C21—C22—H22 | 119.9 |
Pd1—N1—C5 | 112.6 (3) | C23—C22—H22 | 119.9 |
C1—N1—C5 | 118.5 (4) | C22—C23—C24 | 119.6 (6) |
Pd1—N2—C6 | 112.4 (3) | C22—C23—H23 | 120.2 |
Pd1—N2—C7 | 128.5 (3) | C24—C23—H23 | 120.2 |
C6—N2—C7 | 119.0 (4) | C23—C24—C25 | 116.4 (5) |
Pd2—N3—C21 | 127.8 (4) | C23—C24—C32 | 125.7 (5) |
Pd2—N3—C25 | 113.1 (3) | C25—C24—C32 | 117.9 (5) |
C21—N3—C25 | 119.1 (4) | N3—C25—C24 | 123.8 (5) |
Pd2—N4—C26 | 112.3 (3) | N3—C25—C26 | 115.9 (4) |
Pd2—N4—C27 | 128.6 (3) | C24—C25—C26 | 120.3 (5) |
C26—N4—C27 | 119.1 (4) | N4—C26—C25 | 116.8 (4) |
N1—C1—C2 | 121.7 (5) | N4—C26—C30 | 122.2 (5) |
N1—C1—H1 | 119.2 | C25—C26—C30 | 121.1 (4) |
C2—C1—H1 | 119.2 | N4—C27—C28 | 121.8 (5) |
C1—C2—C3 | 120.0 (5) | N4—C27—H27 | 119.1 |
C1—C2—H2 | 120.0 | C28—C27—H27 | 119.1 |
C3—C2—H2 | 120.0 | C27—C28—C29 | 119.7 (6) |
C2—C3—C4 | 120.1 (5) | C27—C28—H28 | 120.2 |
C2—C3—H3 | 119.9 | C29—C28—H28 | 120.2 |
C4—C3—H3 | 119.9 | C28—C29—C30 | 119.6 (6) |
C3—C4—C5 | 116.2 (5) | C28—C29—H29 | 120.2 |
C3—C4—C12 | 125.8 (4) | C30—C29—H29 | 120.2 |
C5—C4—C12 | 118.0 (5) | C26—C30—C29 | 117.6 (5) |
N1—C5—C4 | 123.4 (4) | C26—C30—C31 | 117.4 (5) |
N1—C5—C6 | 116.4 (4) | C29—C30—C31 | 124.9 (6) |
C4—C5—C6 | 120.2 (4) | C30—C31—C32 | 121.4 (6) |
N2—C6—C5 | 116.5 (4) | C30—C31—H31 | 119.3 |
N2—C6—C10 | 122.8 (4) | C32—C31—H31 | 119.3 |
C5—C6—C10 | 120.7 (4) | C24—C32—C31 | 121.8 (5) |
N2—C7—C8 | 121.3 (5) | C24—C32—H32 | 119.1 |
N2—C7—H7 | 119.4 | C31—C32—H32 | 119.1 |
C8—C7—H7 | 119.4 | O5—C33—O6 | 123.5 (5) |
C7—C8—C9 | 120.9 (5) | O5—C33—C35 | 116.5 (4) |
C7—C8—H8 | 119.6 | O6—C33—C35 | 119.9 (4) |
C9—C8—H8 | 119.6 | O7—C34—O8 | 121.2 (5) |
C8—C9—C10 | 119.1 (5) | O7—C34—C35 | 117.2 (4) |
C8—C9—H9 | 120.4 | O8—C34—C35 | 121.6 (5) |
C10—C9—H9 | 120.4 | C33—C35—C34 | 108.6 (4) |
C6—C10—C9 | 116.9 (4) | C33—C35—C36 | 111.9 (4) |
C6—C10—C11 | 118.0 (5) | C33—C35—C38 | 113.5 (4) |
C9—C10—C11 | 125.1 (5) | C34—C35—C36 | 116.3 (4) |
C10—C11—C12 | 122.1 (5) | C34—C35—C38 | 117.0 (4) |
C10—C11—H11 | 119.0 | C36—C35—C38 | 88.4 (4) |
C12—C11—H11 | 119.0 | C35—C36—C37 | 88.5 (4) |
C4—C12—C11 | 121.0 (5) | C35—C36—H36A | 113.9 |
C4—C12—H12 | 119.5 | C35—C36—H36B | 113.9 |
C11—C12—H12 | 119.5 | C37—C36—H36A | 113.9 |
O1—C13—O2 | 120.6 (4) | C37—C36—H36B | 113.9 |
O1—C13—C15 | 117.2 (4) | H36A—C36—H36B | 111.1 |
O2—C13—C15 | 122.2 (4) | C36—C37—C38 | 89.5 (4) |
O3—C14—O4 | 121.8 (5) | C36—C37—H37A | 113.7 |
O3—C14—C15 | 117.4 (4) | C36—C37—H37B | 113.7 |
O4—C14—C15 | 120.8 (4) | C38—C37—H37A | 113.7 |
C13—C15—C14 | 110.3 (4) | C38—C37—H37B | 113.7 |
C13—C15—C16 | 110.1 (4) | H37A—C37—H37B | 111.0 |
C13—C15—C18 | 114.9 (4) | C35—C38—C37 | 88.6 (4) |
C14—C15—C16 | 116.4 (4) | C35—C38—H38A | 113.9 |
C14—C15—C18 | 115.4 (4) | C35—C38—H38B | 113.9 |
C16—C15—C18 | 88.3 (4) | C37—C38—H38A | 113.9 |
C15—C16—C17 | 88.3 (4) | C37—C38—H38B | 113.9 |
C15—C16—H16A | 113.9 | H38A—C38—H38B | 111.1 |
| | | |
Pd1—O1—C13—O2 | 173.4 (3) | N3—C21—C22—C23 | −0.9 (8) |
Pd1—O1—C13—C15 | −8.2 (5) | N3—C25—C24—C23 | 0.8 (7) |
Pd1—O3—C14—O4 | −163.0 (3) | N3—C25—C24—C32 | −179.3 (4) |
Pd1—O3—C14—C15 | 18.1 (5) | N3—C25—C26—N4 | −0.7 (6) |
Pd1—N1—C1—C2 | 175.2 (3) | N3—C25—C26—C30 | 178.1 (4) |
Pd1—N1—C5—C4 | −177.2 (3) | N4—Pd2—O7—C34 | 155.6 (3) |
Pd1—N1—C5—C6 | 1.8 (5) | N4—Pd2—N3—C21 | 179.1 (4) |
Pd1—N2—C6—C5 | 0.4 (5) | N4—Pd2—N3—C25 | −0.4 (3) |
Pd1—N2—C6—C10 | 179.0 (3) | N4—C26—C25—C24 | −178.8 (4) |
Pd1—N2—C7—C8 | −177.7 (4) | N4—C26—C30—C29 | −0.4 (7) |
Pd2—O5—C33—O6 | −172.4 (4) | N4—C26—C30—C31 | 179.5 (4) |
Pd2—O5—C33—C35 | 7.8 (5) | N4—C27—C28—C29 | 0.1 (8) |
Pd2—O7—C34—O8 | 164.5 (4) | C1—N1—C5—C4 | 0.0 (6) |
Pd2—O7—C34—C35 | −17.4 (5) | C1—N1—C5—C6 | 179.0 (4) |
Pd2—N3—C21—C22 | −178.7 (4) | C1—C2—C3—C4 | 2.0 (7) |
Pd2—N3—C25—C24 | 178.8 (4) | C2—C1—N1—C5 | −1.4 (6) |
Pd2—N3—C25—C26 | 0.7 (5) | C2—C3—C4—C5 | −3.2 (7) |
Pd2—N4—C26—C25 | 0.3 (5) | C2—C3—C4—C12 | 178.2 (5) |
Pd2—N4—C26—C30 | −178.5 (4) | C3—C4—C5—C6 | −176.6 (4) |
Pd2—N4—C27—C28 | 178.5 (4) | C3—C4—C12—C11 | 177.5 (5) |
O1—Pd1—O3—C14 | 23.4 (3) | C4—C5—C6—C10 | −1.2 (6) |
O1—Pd1—N1—C1 | −0.7 (4) | C4—C12—C11—C10 | −0.9 (8) |
O1—Pd1—N1—C5 | 176.1 (3) | C5—C4—C12—C11 | −1.1 (7) |
O1—C13—C15—C14 | 60.0 (5) | C5—C6—N2—C7 | −177.5 (4) |
O1—C13—C15—C16 | −69.8 (5) | C5—C6—C10—C9 | 178.3 (4) |
O1—C13—C15—C18 | −167.6 (4) | C5—C6—C10—C11 | −0.8 (7) |
O2—C13—C15—C14 | −121.7 (5) | C6—N2—C7—C8 | −0.2 (7) |
O2—C13—C15—C16 | 108.5 (5) | C6—C5—C4—C12 | 2.1 (6) |
O2—C13—C15—C18 | 10.8 (6) | C6—C10—C9—C8 | −1.5 (7) |
O3—Pd1—O1—C13 | −29.0 (3) | C6—C10—C11—C12 | 1.8 (7) |
O3—Pd1—N2—C6 | −175.7 (3) | C7—N2—C6—C10 | 1.1 (6) |
O3—Pd1—N2—C7 | 2.0 (4) | C7—C8—C9—C10 | 2.5 (8) |
O3—C14—C15—C13 | −66.6 (5) | C8—C9—C10—C11 | 177.5 (5) |
O3—C14—C15—C16 | 59.7 (5) | C9—C10—C11—C12 | −177.2 (5) |
O3—C14—C15—C18 | 161.2 (4) | C13—C15—C16—C17 | −100.4 (4) |
O4—C14—C15—C13 | 114.5 (5) | C13—C15—C18—C17 | 95.8 (4) |
O4—C14—C15—C16 | −119.2 (5) | C14—C15—C16—C17 | 133.2 (4) |
O4—C14—C15—C18 | −17.7 (6) | C14—C15—C18—C17 | −134.2 (4) |
O5—Pd2—O7—C34 | −26.5 (3) | C15—C16—C17—C18 | −15.6 (4) |
O5—Pd2—N3—C21 | 0.8 (4) | C15—C18—C17—C16 | 15.9 (4) |
O5—Pd2—N3—C25 | −178.7 (3) | C16—C15—C18—C17 | −15.7 (4) |
O5—C33—C35—C34 | −62.3 (5) | C17—C16—C15—C18 | 15.6 (4) |
O5—C33—C35—C36 | 67.5 (5) | C21—N3—C25—C24 | −0.8 (6) |
O5—C33—C35—C38 | 165.7 (4) | C21—N3—C25—C26 | −178.9 (4) |
O6—C33—C35—C34 | 117.8 (5) | C21—C22—C23—C24 | 0.9 (8) |
O6—C33—C35—C36 | −112.4 (5) | C22—C21—N3—C25 | 0.8 (7) |
O6—C33—C35—C38 | −14.2 (6) | C22—C23—C24—C25 | −0.9 (8) |
O7—Pd2—O5—C33 | 31.8 (3) | C22—C23—C24—C32 | 179.3 (5) |
O7—Pd2—N4—C26 | 176.4 (3) | C23—C24—C25—C26 | 178.9 (4) |
O7—Pd2—N4—C27 | −3.0 (4) | C23—C24—C32—C31 | −178.1 (5) |
O7—C34—C35—C33 | 68.6 (5) | C24—C25—C26—C30 | −0.1 (7) |
O7—C34—C35—C36 | −58.7 (6) | C24—C32—C31—C30 | −1.4 (9) |
O7—C34—C35—C38 | −161.2 (4) | C25—C24—C32—C31 | 2.1 (8) |
O8—C34—C35—C33 | −113.3 (5) | C25—C26—N4—C27 | 179.7 (4) |
O8—C34—C35—C36 | 119.4 (5) | C25—C26—C30—C29 | −179.1 (4) |
O8—C34—C35—C38 | 16.8 (7) | C25—C26—C30—C31 | 0.8 (7) |
N1—Pd1—O1—C13 | 155.1 (3) | C26—N4—C27—C28 | −0.8 (7) |
N1—Pd1—N2—C6 | 0.4 (3) | C26—C25—C24—C32 | −1.3 (7) |
N1—Pd1—N2—C7 | 178.1 (4) | C26—C30—C29—C28 | −0.4 (8) |
N1—C1—C2—C3 | 0.4 (7) | C26—C30—C31—C32 | 0.0 (8) |
N1—C5—C4—C3 | 2.3 (6) | C27—N4—C26—C30 | 1.0 (6) |
N1—C5—C4—C12 | −179.0 (4) | C27—C28—C29—C30 | 0.5 (8) |
N1—C5—C6—N2 | −1.5 (6) | C28—C29—C30—C31 | 179.8 (5) |
N1—C5—C6—C10 | 179.8 (4) | C29—C30—C31—C32 | 179.8 (5) |
N2—Pd1—O3—C14 | −159.5 (3) | C33—C35—C36—C37 | 98.0 (4) |
N2—Pd1—N1—C1 | −178.0 (4) | C33—C35—C38—C37 | −96.5 (5) |
N2—Pd1—N1—C5 | −1.2 (3) | C34—C35—C36—C37 | −136.4 (4) |
N2—C6—C5—C4 | 177.5 (4) | C34—C35—C38—C37 | 135.7 (4) |
N2—C6—C10—C9 | −0.3 (7) | C35—C36—C37—C38 | 16.9 (4) |
N2—C6—C10—C11 | −179.4 (4) | C35—C38—C37—C36 | −16.9 (4) |
N2—C7—C8—C9 | −1.7 (8) | C36—C35—C38—C37 | 16.7 (4) |
N3—Pd2—O5—C33 | −152.0 (3) | C37—C36—C35—C38 | −16.8 (4) |
N3—Pd2—N4—C26 | 0.1 (3) | C37—C36—C35—C38 | −16.8 (4) |
N3—Pd2—N4—C27 | −179.3 (4) | | |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) −x+1, −y+1, −z; (iii) −x, −y+1, −z+1; (iv) x−1, y, z; (v) −x, −y+1, −z; (vi) −x+1, −y+1, −z+1; (vii) x, y−1, z; (viii) x+1, y, z; (ix) x+1, y−1, z. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O9—H9A···O6ii | 0.94 | 1.82 | 2.756 (6) | 179 |
O9—H9B···O8x | 0.92 | 1.91 | 2.822 (6) | 177 |
O10—H10A···O2iii | 0.82 | 2.26 | 3.056 (6) | 165 |
O10—H10B···O9vi | 0.87 | 1.99 | 2.853 (8) | 175 |
O11—H11A···O10 | 0.81 | 2.07 | 2.881 (7) | 176 |
O11—H11B···O12 | 0.80 | 2.02 | 2.822 (6) | 175 |
O12—H12A···O2viii | 0.81 | 2.08 | 2.850 (5) | 159 |
O12—H12B···O4vi | 0.80 | 2.08 | 2.848 (5) | 159 |
Symmetry codes: (ii) −x+1, −y+1, −z; (iii) −x, −y+1, −z+1; (vi) −x+1, −y+1, −z+1; (viii) x+1, y, z; (x) x, y+1, z. |
Experimental details
| (I) | (IIa) | (IIb) |
Crystal data |
Chemical formula | [Pd(C6H6O4)(C10H8N2)] | [Pd(C6H6O4)(C12H8N2)]·H2O | [Pd(C6H6O4)(C12H8N2)]·2H2O |
Mr | 404.71 | 446.75 | 464.76 |
Crystal system, space group | Triclinic, P1 | Orthorhombic, Pnn2 | Triclinic, P1 |
Temperature (K) | 296 | 296 | 296 |
a, b, c (Å) | 9.087 (1), 9.440 (1), 9.9820 (9) | 17.219 (2), 18.875 (2), 5.268 (2) | 11.079 (2), 11.826 (3), 13.678 (4) |
α, β, γ (°) | 90.458 (9), 113.095 (9), 111.077 (9) | 90, 90, 90 | 85.50 (2), 84.55 (2), 85.87 (2) |
V (Å3) | 723.78 (15) | 1712.2 (7) | 1774.7 (8) |
Z | 2 | 4 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 1.31 | 1.12 | 1.09 |
Crystal size (mm) | 0.35 × 0.20 × 0.10 | 0.50 × 0.30 × 0.20 | 0.20 × 0.20 × 0.10 |
|
Data collection |
Diffractometer | Rigaku AFC-5R diffractometer | Rigaku AFC-5R diffractometer | Rigaku AFC-5R diffractometer |
Absorption correction | ψ scan (North et al., 1968) | ψ scan (North et al., 1968) | ψ scan (North et al., 1968) |
Tmin, Tmax | 0.732, 0.878 | 0.736, 0.800 | 0.777, 0.897 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3512, 3315, 3005 | 2177, 2177, 1839 | 8545, 8164, 5125 |
Rint | 0.014 | 0.000 | 0.033 |
(sin θ/λ)max (Å−1) | 0.650 | 0.649 | 0.650 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.022, 0.057, 1.30 | 0.028, 0.079, 1.20 | 0.040, 0.118, 0.99 |
No. of reflections | 3315 | 2177 | 8164 |
No. of parameters | 208 | 244 | 487 |
No. of restraints | ? | ? | ? |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.40, −0.45 | 0.51, −0.60 | 0.44, −0.79 |
Absolute structure | ? | Flack (1983), no Friedel pairs | ? |
Absolute structure parameter | ? | 0.17 (6) | ? |
Selected geometric parameters (Å, º) for (I) topPd1—O1 | 2.002 (2) | Pd1—N1 | 1.999 (2) |
Pd1—O3 | 2.004 (2) | Pd1—N2 | 1.998 (2) |
| | | |
O1—Pd1—O3 | 91.68 (7) | O3—Pd1—N1 | 174.37 (9) |
O1—Pd1—N1 | 93.94 (8) | O3—Pd1—N2 | 93.57 (8) |
O1—Pd1—N2 | 174.40 (6) | N1—Pd1—N2 | 80.80 (8) |
Selected geometric parameters (Å, º) for (IIa) topPd1—O1 | 2.003 (4) | Pd1—N1 | 1.991 (5) |
Pd1—O3 | 2.005 (4) | Pd1—N2 | 1.994 (5) |
| | | |
O1—Pd1—O3 | 91.3 (2) | O3—Pd1—N1 | 174.7 (2) |
O1—Pd1—N1 | 93.0 (2) | O3—Pd1—N2 | 93.2 (2) |
O1—Pd1—N2 | 173.2 (2) | N1—Pd1—N2 | 82.2 (2) |
Hydrogen-bond geometry (Å, º) for (IIa) top
D—H···A | D—H | H···A | D···A | D—H···A |
O5A—H5AA···O4 | 1.07 | 2.11 | 3.17 (2) | 177 |
O5B—H5BA···O4 | 0.92 | 1.83 | 2.753 (12) | 179 |
O5A—H5AB···O5Bi | 1.06 | 2.18 | 3.24 (4) | 179 |
O5B—H5BB···O5Aii | 0.99 | 1.99 | 2.99 (3) | 179 |
Symmetry codes: (i) x, y, z−1; (ii) −x+1, −y+1, z. |
Selected geometric parameters (Å, º) for (IIb) topPd1—O1 | 2.001 (3) | Pd2—O5 | 1.997 (4) |
Pd1—O3 | 1.982 (3) | Pd2—O7 | 1.995 (3) |
Pd1—N1 | 2.002 (4) | Pd2—N3 | 2.001 (4) |
Pd1—N2 | 2.010 (4) | Pd2—N4 | 2.007 (4) |
| | | |
O1—Pd1—O3 | 92.8 (1) | O5—Pd2—O7 | 92.6 (1) |
O1—Pd1—N1 | 93.3 (1) | O5—Pd2—N3 | 92.7 (2) |
O1—Pd1—N2 | 174.7 (1) | O5—Pd2—N4 | 174.4 (1) |
O3—Pd1—N1 | 172.7 (2) | O7—Pd2—N3 | 173.5 (2) |
O3—Pd1—N2 | 91.6 (1) | O7—Pd2—N4 | 92.7 (1) |
N1—Pd1—N2 | 82.1 (1) | N3—Pd2—N4 | 82.0 (2) |
Hydrogen-bond geometry (Å, º) for (IIb) top
D—H···A | D—H | H···A | D···A | D—H···A |
O9—H9A···O6i | 0.94 | 1.82 | 2.756 (6) | 179 |
O9—H9B···O8ii | 0.92 | 1.91 | 2.822 (6) | 177 |
O10—H10A···O2iii | 0.82 | 2.26 | 3.056 (6) | 165 |
O10—H10B···O9iv | 0.87 | 1.99 | 2.853 (8) | 175 |
O11—H11A···O10 | 0.81 | 2.07 | 2.881 (7) | 176 |
O11—H11B···O12 | 0.80 | 2.02 | 2.822 (6) | 175 |
O12—H12A···O2v | 0.81 | 2.08 | 2.850 (5) | 159 |
O12—H12B···O4iv | 0.80 | 2.08 | 2.848 (5) | 159 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x, y+1, z; (iii) −x, −y+1, −z+1; (iv) −x+1, −y+1, −z+1; (v) x+1, y, z. |
Square-planar PtII complexes, such as cisplatin, cis-diamminedichloroplatinum(II), or carboplatin, cis-diammine(1,1-cyclobutanedicarboxylato)platinum(II), have been used as therapeutic anticancer drugs, where carboplatin, with the bidentate 1,1-cyclobutanedicarboxylate (cbdca) ligand, has fewer side effects than cisplatin (Jakupec et al., 2003). The PdII analogues of such PtII complexes have been used as good models for studies of the chemistry of square-planar complexes (Rau et al., 1996). For example, cis-diammine(1,1-cyclobutanedicarboxylato)palladium(II) (Barnham et al., 1994) is isostructural with carboplatin (Beagley et al., 1985; Neidle et al., 1980). Recently, a palladium complex with an aromatic heterocyclic ligand, [Pd(bpy)(cbdca)] (where bpy is 2,2'-bipyridine), has been shown to have better cytotoxic activity than cisplatin against P388 lymphocytic leukemia cells (Mansuri-Torshizi et al., 2001). The aromatic heterocycles can stack with nucleobases and enhance complex formation with DNA, which is the principal target in the chemotherapy of tumours (Shehata, 2001). In this study, we have prepared the PdII analogues of carboplatin complexes with the aromatic heterocyclic ligands bpy and 1,10-phenanthroline (phen), and determined the structures of [Pd(bpy)(cbdca)], (I), [Pd(phen)(cbdca)]·H2O, (IIa), and [Pd(phen)(cbdca)]·2H2O, (IIb). The results are presented here. \sch
The central Pd atom of each complex has the same distorted cis-square-planer coordination geometry, involving two N atoms of the heterocycle and two O atoms of the cbdca ligand (Figs. 1–3). The bpy plane is mostly perpendicular to the cyclobutane plane. The Pd atom and cbdca ligand form a six-membered chelate ring in a boat conformation, while the aromatic heterocycle ligand makes a planar five-membered chelate ring. In (IIb), there are two independent molecules in the asymmetric unit. The molecular structures of (IIa) and (IIb) are similar to each other.
The bond lengths and angles in (I), (IIa) and (IIb) are very similar to each other (Tables 2, 4 and 6). These values may be compared with those reported for [Pd(NH3)2(cbdca)] [(III); Barnham et al., 1994) and [Pd(en)(cbdca)] [(IV); en is ethylenediamine; Tercero et al., 2003). The Pd—N and Pd—O bond lengths in (I), (IIa) and (IIb) are in the ranges 1.991 (5)–2.010 (4) Å and 1.982 (3)–2.005 (4) Å, respectively, which are slightly shorter than those in (III) and (IV) [2.020 (7)–2.030 (2) Å for Pd—N and 2.005 (2)–2.017 (6) Å for Pd—O]. Therefore, the coordination bonds in the title compounds may be somewhat stronger than those in (III) and (IV). The O—Pd—O chelate angles in (I), (IIa) and (IIb) are similar to those observed in (III) and (IV) [90.9° and 92.69 (7)°, respectively]. The bpy N—Pd—N chelate angle in (I), and the phen N—Pd—N chelate angles in (IIa) and (IIb), are slightly smaller than the value of 84.15 (8)° for en in (IV), and much smaller than the NH3—Pd—NH3 bond angle of 95.0° in (III).
The crystal structure of (I) is stabilized by stacking interactions between bpy ligands, which are related by a centre of symmetry, with a distance between the planes of 3.685 (2) Å. In (IIa), no stacking interactions between phen ligands are present, and the complexes are connected to each other by hydrogen-bonding networks through disordered water molecules (Table 4). In (IIb), there are stacking interactions between phen ligands related by a centre of symmetry, the distances between the planes being 3.379 (6) and 3.360 (7) Å, for Pd1—Pd1 and Pd2—Pd2 pairs, respectively. Furthermore, complex molecules are connected to each other by hydrogen-bonding networks through the water molecules (Table 5).