Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807017618/ng2249sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807017618/ng2249Isup2.hkl |
CCDC reference: 646602
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.003 Å
- R factor = 0.045
- wR factor = 0.104
- Data-to-parameter ratio = 40.8
checkCIF/PLATON results
No syntax errors found
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 40.00 From the CIF: _reflns_number_total 11416 Count of symmetry unique reflns 6282 Completeness (_total/calc) 181.73% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 5134 Fraction of Friedel pairs measured 0.817 Are heavy atom types Z>Si present yes
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 0 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
checkCIF publication errors
Alert level A PUBL023_ALERT_1_A There is a mismatched ^ on line 93 \k^4^2^O,N,N',O']bis(pyridine-\kN)zinc(II) If you require a ^ then it should be escaped with a \, i.e. \^ Otherwise there must be a matching closing ~, e.g. ^12^C PUBL023_ALERT_1_A There is a mismatched ^ on line 274 \k^4^2^O,N,N',O']bis(pyridine-\kN)zinc(II) If you require a ^ then it should be escaped with a \, i.e. \^ Otherwise there must be a matching closing ~, e.g. ^12^C
2 ALERT level A = Data missing that is essential or data in wrong format 0 ALERT level G = General alerts. Data that may be required is missing
For related literature, see: Allen et al. (1987); Assaf & Chung (1984); Berg & Shi (1996); Bernstein et al. (1995); Tarafder et al. (2002).
The title compound was synthesized as follows. To a solution of o-phenylenediamine (0.216 g, 2 mmol) in ethanol (20 ml) was added 2-hydroxybenzaldehyde (0.4 ml, 4 mmol). The mixture was refluxed with stirring for half an hour. Zinc chloride (0.272 g, 2 mmol) in ethanol (10 ml) was then added, followed by triethylamine (0.5 ml, 3.6 mmol). The mixture was stirred at
room temperature for 2 h, following which the yellow precipitate obtained was washed with ethanol (about 5 ml), dried and then washed in a copious amount of diethyl ether. This precipitate was dissolved in pyridine (15 ml), and after 9 d of slow evaporation of the pyridine at room temperature, yellow crystals of
(I) suitable for X-ray diffraction analysis were formed.
H atoms were positioned geometrically and treated as riding, with C—H = 0.93 Å and the Uiso(H) = 1.2Ueq(C).
Zinc, an element of strong interest in biology, medicine, materials and catalysis, plays important roles in various biological systems, such as neurotransmission, signal transduction and gene expression (Assaf & Chung, 1984; Berg & Shi, 1996). It is well known that zinc complexes with Schiff bases show very good activity against the leukaemic cell (Tarafder et al., 2002). Here, we report the crystal structure of the title ZnII complex, (I), with the 2,2'-{1,2-phenylenebis[nitrilomethylylide]}diphenol Schiff base.
The ZnII atom in (I) is five-coordinated by two O atoms and two N atoms in the basal plane, together with the N atom of the pyridine ring in the apical position, giving a distorted square-pyramidal geometry (Fig. 1 and Table 1). The ZnII ion is displaced from the basal plane (N1/N2/O2/O1) by 0.3975 (2) Å. The N3/C21–C25 pyridine ring is attached axially to Zn1 with the torsion angle O1—Zn1—N3—C25 = -3.93 (15)°. The bond lengths and angles in (I) have normal values (Allen et al., 1987).
An intramolecular C25—H25A···O1 interaction (Table 2 and Fig. 1) generates S(5) ring motifs (Bernstein et al., 1995). In the crystal structure, the molecules are linked by intermolecular C23—H23A···O2 interactions into wave-like chains along the c axis (Fig. 2). In addition, the crystal packing is further stabilized by weak intermolecular C—H···π interactions involving the Zn1/O1/C1/C6/C7/N1 ring (centroid Cg1) (Table 2).
For related literature, see: Allen et al. (1987); Assaf & Chung (1984); Berg & Shi (1996); Bernstein et al. (1995); Tarafder et al. (2002).
Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 1998); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2003).
[Zn(C20H14N2O2)(C5H5N)] | F(000) = 944 |
Mr = 458.80 | Dx = 1.505 Mg m−3 |
Monoclinic, Cc | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C -2yc | Cell parameters from 9040 reflections |
a = 17.8611 (3) Å | θ = 2.1–40.0° |
b = 11.9929 (3) Å | µ = 1.24 mm−1 |
c = 9.4946 (2) Å | T = 100 K |
β = 95.540 (1)° | Block, yellow |
V = 2024.30 (7) Å3 | 0.53 × 0.38 × 0.21 mm |
Z = 4 |
Bruker SMART APEXII CCD area-detector diffractometer | 11416 independent reflections |
Radiation source: fine-focus sealed tube | 9121 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.047 |
Detector resolution: 8.33 pixels mm-1 | θmax = 40.0°, θmin = 2.1° |
ω scans | h = −31→31 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −19→21 |
Tmin = 0.588, Tmax = 0.778 | l = −17→16 |
31548 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.045 | H-atom parameters constrained |
wR(F2) = 0.104 | w = 1/[σ2(Fo2) + 1.0902P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
11416 reflections | Δρmax = 0.87 e Å−3 |
280 parameters | Δρmin = −0.92 e Å−3 |
2 restraints | Absolute structure: Flack (1983), with 5258 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.014 (7) |
[Zn(C20H14N2O2)(C5H5N)] | V = 2024.30 (7) Å3 |
Mr = 458.80 | Z = 4 |
Monoclinic, Cc | Mo Kα radiation |
a = 17.8611 (3) Å | µ = 1.24 mm−1 |
b = 11.9929 (3) Å | T = 100 K |
c = 9.4946 (2) Å | 0.53 × 0.38 × 0.21 mm |
β = 95.540 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 11416 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 9121 reflections with I > 2σ(I) |
Tmin = 0.588, Tmax = 0.778 | Rint = 0.047 |
31548 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | H-atom parameters constrained |
wR(F2) = 0.104 | Δρmax = 0.87 e Å−3 |
S = 1.07 | Δρmin = −0.92 e Å−3 |
11416 reflections | Absolute structure: Flack (1983), with 5258 Friedel pairs |
280 parameters | Absolute structure parameter: 0.014 (7) |
2 restraints |
Experimental. The data were collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.137941 (15) | 0.276624 (17) | 0.931457 (18) | 0.01513 (4) | |
O1 | 0.05548 (8) | 0.26576 (14) | 1.05451 (15) | 0.0210 (3) | |
O2 | 0.22018 (8) | 0.28305 (14) | 1.08423 (15) | 0.0213 (3) | |
N1 | 0.06264 (9) | 0.35148 (15) | 0.77673 (16) | 0.0166 (3) | |
N2 | 0.21070 (8) | 0.35007 (15) | 0.79573 (15) | 0.0161 (3) | |
C1 | −0.01125 (10) | 0.30971 (18) | 1.04053 (19) | 0.0178 (3) | |
C2 | −0.05900 (11) | 0.29339 (19) | 1.1504 (2) | 0.0212 (4) | |
H2A | −0.0418 | 0.2502 | 1.2282 | 0.025* | |
C3 | −0.12951 (11) | 0.3392 (2) | 1.1455 (2) | 0.0245 (4) | |
H3A | −0.1587 | 0.3273 | 1.2200 | 0.029* | |
C4 | −0.15823 (12) | 0.4040 (2) | 1.0294 (2) | 0.0258 (4) | |
H4A | −0.2060 | 0.4353 | 1.0265 | 0.031* | |
C5 | −0.11409 (12) | 0.4202 (2) | 0.9195 (2) | 0.0224 (4) | |
H5A | −0.1328 | 0.4630 | 0.8423 | 0.027* | |
C6 | −0.04126 (12) | 0.3736 (2) | 0.9211 (2) | 0.0176 (4) | |
C7 | −0.00347 (10) | 0.39031 (18) | 0.79527 (19) | 0.0180 (3) | |
H7A | −0.0282 | 0.4318 | 0.7223 | 0.022* | |
C8 | 0.09499 (10) | 0.36759 (17) | 0.64817 (18) | 0.0167 (3) | |
C9 | 0.05405 (11) | 0.37665 (18) | 0.51553 (19) | 0.0189 (3) | |
H9A | 0.0018 | 0.3751 | 0.5079 | 0.023* | |
C10 | 0.09183 (12) | 0.38795 (18) | 0.3952 (2) | 0.0197 (3) | |
H10A | 0.0646 | 0.3950 | 0.3071 | 0.024* | |
C11 | 0.17024 (12) | 0.38874 (18) | 0.4054 (2) | 0.0200 (3) | |
H11A | 0.1950 | 0.3963 | 0.3240 | 0.024* | |
C12 | 0.21155 (11) | 0.37828 (18) | 0.53604 (19) | 0.0190 (3) | |
H12A | 0.2638 | 0.3784 | 0.5423 | 0.023* | |
C13 | 0.17443 (10) | 0.36752 (16) | 0.65840 (17) | 0.0157 (3) | |
C14 | 0.27789 (10) | 0.38710 (17) | 0.83114 (18) | 0.0174 (3) | |
H14A | 0.3015 | 0.4257 | 0.7629 | 0.021* | |
C15 | 0.31893 (12) | 0.3730 (2) | 0.9683 (2) | 0.0175 (4) | |
C16 | 0.39295 (12) | 0.4161 (2) | 0.9850 (2) | 0.0232 (4) | |
H16A | 0.4121 | 0.4504 | 0.9084 | 0.028* | |
C17 | 0.43724 (12) | 0.4087 (2) | 1.1108 (2) | 0.0246 (4) | |
H17A | 0.4859 | 0.4373 | 1.1193 | 0.030* | |
C18 | 0.40826 (11) | 0.35744 (19) | 1.2266 (2) | 0.0207 (3) | |
H18A | 0.4380 | 0.3516 | 1.3123 | 0.025* | |
C19 | 0.33618 (11) | 0.31565 (19) | 1.21453 (19) | 0.0201 (3) | |
H19A | 0.3183 | 0.2822 | 1.2930 | 0.024* | |
C20 | 0.28810 (10) | 0.32175 (17) | 1.08643 (18) | 0.0172 (3) | |
N3 | 0.13875 (8) | 0.11047 (15) | 0.86487 (16) | 0.0172 (3) | |
C21 | 0.18650 (11) | 0.07344 (18) | 0.7742 (2) | 0.0197 (3) | |
H21A | 0.2177 | 0.1247 | 0.7351 | 0.024* | |
C22 | 0.19123 (11) | −0.03757 (19) | 0.7364 (2) | 0.0218 (3) | |
H22A | 0.2259 | −0.0603 | 0.6752 | 0.026* | |
C23 | 0.14410 (12) | −0.11397 (18) | 0.7905 (2) | 0.0213 (3) | |
H23A | 0.1456 | −0.1888 | 0.7653 | 0.026* | |
C24 | 0.09411 (12) | −0.0766 (2) | 0.8840 (2) | 0.0230 (4) | |
H24A | 0.0619 | −0.1263 | 0.9231 | 0.028* | |
C25 | 0.09292 (11) | 0.03505 (19) | 0.9177 (2) | 0.0201 (3) | |
H25A | 0.0591 | 0.0595 | 0.9796 | 0.024* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.01612 (7) | 0.01586 (9) | 0.01368 (7) | 0.00019 (10) | 0.00283 (5) | 0.00089 (9) |
O1 | 0.0196 (6) | 0.0259 (8) | 0.0182 (6) | 0.0050 (5) | 0.0054 (5) | 0.0034 (5) |
O2 | 0.0199 (6) | 0.0276 (8) | 0.0164 (5) | −0.0057 (5) | 0.0021 (4) | 0.0040 (5) |
N1 | 0.0186 (6) | 0.0166 (8) | 0.0149 (6) | −0.0004 (5) | 0.0034 (5) | 0.0002 (5) |
N2 | 0.0184 (6) | 0.0164 (7) | 0.0134 (6) | −0.0002 (5) | 0.0017 (4) | 0.0011 (5) |
C1 | 0.0175 (7) | 0.0189 (9) | 0.0174 (7) | −0.0007 (6) | 0.0035 (5) | −0.0024 (6) |
C2 | 0.0207 (8) | 0.0237 (10) | 0.0197 (7) | −0.0006 (7) | 0.0040 (6) | −0.0008 (7) |
C3 | 0.0212 (8) | 0.0305 (12) | 0.0228 (8) | −0.0017 (7) | 0.0073 (6) | −0.0043 (8) |
C4 | 0.0187 (8) | 0.0315 (12) | 0.0278 (9) | 0.0040 (7) | 0.0049 (7) | −0.0042 (8) |
C5 | 0.0192 (8) | 0.0251 (11) | 0.0229 (9) | 0.0024 (7) | 0.0016 (7) | −0.0014 (8) |
C6 | 0.0171 (8) | 0.0171 (9) | 0.0189 (8) | −0.0002 (6) | 0.0025 (6) | −0.0029 (7) |
C7 | 0.0192 (7) | 0.0178 (9) | 0.0169 (7) | 0.0003 (6) | 0.0012 (6) | 0.0003 (6) |
C8 | 0.0204 (7) | 0.0148 (8) | 0.0147 (7) | 0.0003 (6) | 0.0013 (5) | 0.0002 (6) |
C9 | 0.0218 (8) | 0.0180 (9) | 0.0164 (7) | 0.0023 (6) | −0.0004 (6) | 0.0000 (6) |
C10 | 0.0289 (9) | 0.0161 (9) | 0.0140 (7) | 0.0012 (7) | 0.0012 (6) | 0.0013 (6) |
C11 | 0.0299 (9) | 0.0172 (9) | 0.0131 (7) | 0.0001 (7) | 0.0030 (6) | 0.0010 (6) |
C12 | 0.0233 (8) | 0.0182 (9) | 0.0164 (7) | −0.0006 (6) | 0.0057 (6) | 0.0026 (6) |
C13 | 0.0190 (7) | 0.0145 (8) | 0.0138 (6) | −0.0011 (6) | 0.0026 (5) | 0.0008 (5) |
C14 | 0.0196 (7) | 0.0179 (9) | 0.0153 (7) | −0.0011 (6) | 0.0043 (5) | 0.0019 (6) |
C15 | 0.0192 (8) | 0.0180 (10) | 0.0154 (7) | −0.0004 (7) | 0.0016 (6) | 0.0025 (6) |
C16 | 0.0202 (8) | 0.0297 (12) | 0.0196 (8) | −0.0042 (7) | 0.0010 (7) | 0.0049 (8) |
C17 | 0.0198 (8) | 0.0306 (12) | 0.0228 (8) | −0.0050 (7) | −0.0005 (6) | 0.0050 (8) |
C18 | 0.0215 (8) | 0.0213 (10) | 0.0186 (7) | 0.0003 (7) | −0.0018 (6) | 0.0016 (7) |
C19 | 0.0218 (8) | 0.0216 (10) | 0.0166 (7) | −0.0018 (7) | 0.0012 (6) | 0.0025 (7) |
C20 | 0.0203 (7) | 0.0162 (9) | 0.0150 (7) | −0.0005 (6) | 0.0020 (5) | 0.0004 (6) |
N3 | 0.0151 (6) | 0.0192 (8) | 0.0174 (6) | −0.0001 (5) | 0.0023 (5) | 0.0010 (5) |
C21 | 0.0201 (7) | 0.0184 (9) | 0.0213 (8) | −0.0015 (6) | 0.0059 (6) | −0.0017 (7) |
C22 | 0.0239 (8) | 0.0214 (10) | 0.0208 (8) | 0.0011 (7) | 0.0059 (6) | −0.0013 (7) |
C23 | 0.0292 (9) | 0.0160 (9) | 0.0187 (7) | −0.0009 (7) | 0.0020 (6) | −0.0022 (6) |
C24 | 0.0262 (9) | 0.0214 (10) | 0.0222 (8) | −0.0056 (7) | 0.0062 (7) | −0.0007 (7) |
C25 | 0.0204 (8) | 0.0217 (10) | 0.0188 (7) | −0.0025 (6) | 0.0052 (6) | 0.0003 (7) |
Zn1—O2 | 1.9637 (14) | C10—H10A | 0.9300 |
Zn1—O1 | 1.9707 (14) | C11—C12 | 1.387 (3) |
Zn1—N3 | 2.0910 (18) | C11—H11A | 0.9300 |
Zn1—N1 | 2.0956 (16) | C12—C13 | 1.398 (2) |
Zn1—N2 | 2.1092 (15) | C12—H12A | 0.9300 |
O1—C1 | 1.298 (2) | C14—C15 | 1.441 (3) |
O2—C20 | 1.297 (2) | C14—H14A | 0.9300 |
N1—C7 | 1.297 (2) | C15—C16 | 1.414 (3) |
N1—C8 | 1.413 (2) | C15—C20 | 1.435 (3) |
N2—C14 | 1.293 (2) | C16—C17 | 1.371 (3) |
N2—C13 | 1.414 (2) | C16—H16A | 0.9300 |
C1—C2 | 1.423 (3) | C17—C18 | 1.402 (3) |
C1—C6 | 1.429 (3) | C17—H17A | 0.9300 |
C2—C3 | 1.371 (3) | C18—C19 | 1.376 (3) |
C2—H2A | 0.9300 | C18—H18A | 0.9300 |
C3—C4 | 1.405 (3) | C19—C20 | 1.421 (3) |
C3—H3A | 0.9300 | C19—H19A | 0.9300 |
C4—C5 | 1.380 (3) | N3—C21 | 1.345 (2) |
C4—H4A | 0.9300 | N3—C25 | 1.349 (3) |
C5—C6 | 1.414 (3) | C21—C22 | 1.383 (3) |
C5—H5A | 0.9300 | C21—H21A | 0.9300 |
C6—C7 | 1.442 (3) | C22—C23 | 1.377 (3) |
C7—H7A | 0.9300 | C22—H22A | 0.9300 |
C8—C9 | 1.398 (3) | C23—C24 | 1.392 (3) |
C8—C13 | 1.413 (2) | C23—H23A | 0.9300 |
C9—C10 | 1.388 (3) | C24—C25 | 1.377 (3) |
C9—H9A | 0.9300 | C24—H24A | 0.9300 |
C10—C11 | 1.395 (3) | C25—H25A | 0.9300 |
O2—Zn1—O1 | 96.51 (6) | C12—C11—C10 | 120.33 (18) |
O2—Zn1—N3 | 103.55 (7) | C12—C11—H11A | 119.8 |
O1—Zn1—N3 | 98.26 (6) | C10—C11—H11A | 119.8 |
O2—Zn1—N1 | 152.21 (7) | C11—C12—C13 | 119.86 (18) |
O1—Zn1—N1 | 88.75 (6) | C11—C12—H12A | 120.1 |
N3—Zn1—N1 | 102.65 (6) | C13—C12—H12A | 120.1 |
O2—Zn1—N2 | 88.50 (6) | C12—C13—C8 | 119.77 (16) |
O1—Zn1—N2 | 158.38 (7) | C12—C13—N2 | 124.61 (16) |
N3—Zn1—N2 | 100.99 (6) | C8—C13—N2 | 115.54 (14) |
N1—Zn1—N2 | 77.55 (6) | N2—C14—C15 | 124.96 (17) |
C1—O1—Zn1 | 130.08 (13) | N2—C14—H14A | 117.5 |
C20—O2—Zn1 | 131.12 (12) | C15—C14—H14A | 117.5 |
C7—N1—C8 | 121.44 (16) | C16—C15—C20 | 119.59 (18) |
C7—N1—Zn1 | 126.14 (12) | C16—C15—C14 | 116.58 (18) |
C8—N1—Zn1 | 112.07 (12) | C20—C15—C14 | 123.80 (19) |
C14—N2—C13 | 121.32 (15) | C17—C16—C15 | 121.96 (19) |
C14—N2—Zn1 | 126.56 (12) | C17—C16—H16A | 119.0 |
C13—N2—Zn1 | 111.75 (11) | C15—C16—H16A | 119.0 |
O1—C1—C2 | 118.57 (18) | C16—C17—C18 | 119.09 (19) |
O1—C1—C6 | 124.69 (17) | C16—C17—H17A | 120.5 |
C2—C1—C6 | 116.73 (18) | C18—C17—H17A | 120.5 |
C3—C2—C1 | 122.2 (2) | C19—C18—C17 | 120.51 (18) |
C3—C2—H2A | 118.9 | C19—C18—H18A | 119.7 |
C1—C2—H2A | 118.9 | C17—C18—H18A | 119.7 |
C2—C3—C4 | 120.89 (18) | C18—C19—C20 | 122.40 (17) |
C2—C3—H3A | 119.6 | C18—C19—H19A | 118.8 |
C4—C3—H3A | 119.6 | C20—C19—H19A | 118.8 |
C5—C4—C3 | 118.62 (19) | O2—C20—C19 | 118.83 (16) |
C5—C4—H4A | 120.7 | O2—C20—C15 | 124.72 (17) |
C3—C4—H4A | 120.7 | C19—C20—C15 | 116.44 (17) |
C4—C5—C6 | 121.9 (2) | C21—N3—C25 | 117.51 (18) |
C4—C5—H5A | 119.1 | C21—N3—Zn1 | 122.12 (14) |
C6—C5—H5A | 119.1 | C25—N3—Zn1 | 120.30 (13) |
C5—C6—C1 | 119.63 (18) | N3—C21—C22 | 122.83 (19) |
C5—C6—C7 | 116.1 (2) | N3—C21—H21A | 118.6 |
C1—C6—C7 | 124.18 (18) | C22—C21—H21A | 118.6 |
N1—C7—C6 | 124.60 (18) | C23—C22—C21 | 119.27 (18) |
N1—C7—H7A | 117.7 | C23—C22—H22A | 120.4 |
C6—C7—H7A | 117.7 | C21—C22—H22A | 120.4 |
C9—C8—C13 | 119.77 (16) | C22—C23—C24 | 118.4 (2) |
C9—C8—N1 | 124.52 (16) | C22—C23—H23A | 120.8 |
C13—C8—N1 | 115.61 (15) | C24—C23—H23A | 120.8 |
C10—C9—C8 | 119.68 (18) | C25—C24—C23 | 119.12 (19) |
C10—C9—H9A | 120.2 | C25—C24—H24A | 120.4 |
C8—C9—H9A | 120.2 | C23—C24—H24A | 120.4 |
C9—C10—C11 | 120.59 (19) | N3—C25—C24 | 122.81 (17) |
C9—C10—H10A | 119.7 | N3—C25—H25A | 118.6 |
C11—C10—H10A | 119.7 | C24—C25—H25A | 118.6 |
O2—Zn1—O1—C1 | 142.18 (19) | C8—C9—C10—C11 | 0.9 (3) |
N3—Zn1—O1—C1 | −113.06 (19) | C9—C10—C11—C12 | 0.0 (3) |
N1—Zn1—O1—C1 | −10.46 (19) | C10—C11—C12—C13 | −0.4 (3) |
N2—Zn1—O1—C1 | 39.7 (3) | C11—C12—C13—C8 | −0.1 (3) |
O1—Zn1—O2—C20 | −157.39 (19) | C11—C12—C13—N2 | 176.26 (19) |
N3—Zn1—O2—C20 | 102.47 (19) | C9—C8—C13—C12 | 1.0 (3) |
N1—Zn1—O2—C20 | −57.7 (3) | N1—C8—C13—C12 | 177.39 (18) |
N2—Zn1—O2—C20 | 1.53 (19) | C9—C8—C13—N2 | −175.69 (18) |
O2—Zn1—N1—C7 | −88.4 (2) | N1—C8—C13—N2 | 0.7 (3) |
O1—Zn1—N1—C7 | 13.18 (18) | C14—N2—C13—C12 | 29.3 (3) |
N3—Zn1—N1—C7 | 111.36 (18) | Zn1—N2—C13—C12 | −157.32 (16) |
N2—Zn1—N1—C7 | −149.98 (19) | C14—N2—C13—C8 | −154.23 (19) |
O2—Zn1—N1—C8 | 84.83 (18) | Zn1—N2—C13—C8 | 19.2 (2) |
O1—Zn1—N1—C8 | −173.55 (13) | C13—N2—C14—C15 | −180.0 (2) |
N3—Zn1—N1—C8 | −75.36 (14) | Zn1—N2—C14—C15 | 7.7 (3) |
N2—Zn1—N1—C8 | 23.29 (13) | N2—C14—C15—C16 | 177.8 (2) |
O2—Zn1—N2—C14 | −5.67 (18) | N2—C14—C15—C20 | −4.2 (4) |
O1—Zn1—N2—C14 | 98.3 (2) | C20—C15—C16—C17 | 1.2 (4) |
N3—Zn1—N2—C14 | −109.17 (18) | C14—C15—C16—C17 | 179.4 (2) |
N1—Zn1—N2—C14 | 150.13 (19) | C15—C16—C17—C18 | −0.3 (4) |
O2—Zn1—N2—C13 | −178.67 (14) | C16—C17—C18—C19 | −0.4 (4) |
O1—Zn1—N2—C13 | −74.7 (2) | C17—C18—C19—C20 | 0.2 (3) |
N3—Zn1—N2—C13 | 77.82 (13) | Zn1—O2—C20—C19 | 179.71 (15) |
N1—Zn1—N2—C13 | −22.88 (13) | Zn1—O2—C20—C15 | 0.8 (3) |
Zn1—O1—C1—C2 | −176.48 (15) | C18—C19—C20—O2 | −178.2 (2) |
Zn1—O1—C1—C6 | 4.0 (3) | C18—C19—C20—C15 | 0.7 (3) |
O1—C1—C2—C3 | 178.4 (2) | C16—C15—C20—O2 | 177.5 (2) |
C6—C1—C2—C3 | −2.0 (3) | C14—C15—C20—O2 | −0.5 (4) |
C1—C2—C3—C4 | 0.8 (4) | C16—C15—C20—C19 | −1.4 (3) |
C2—C3—C4—C5 | 0.3 (4) | C14—C15—C20—C19 | −179.4 (2) |
C3—C4—C5—C6 | 0.0 (4) | O2—Zn1—N3—C21 | −82.04 (15) |
C4—C5—C6—C1 | −1.3 (4) | O1—Zn1—N3—C21 | 179.17 (15) |
C4—C5—C6—C7 | 175.6 (2) | N1—Zn1—N3—C21 | 88.61 (15) |
O1—C1—C6—C5 | −178.2 (2) | N2—Zn1—N3—C21 | 9.07 (16) |
C2—C1—C6—C5 | 2.3 (3) | O2—Zn1—N3—C25 | 94.86 (15) |
O1—C1—C6—C7 | 5.1 (4) | O1—Zn1—N3—C25 | −3.93 (15) |
C2—C1—C6—C7 | −174.4 (2) | N1—Zn1—N3—C25 | −94.50 (15) |
C8—N1—C7—C6 | 177.53 (19) | N2—Zn1—N3—C25 | −174.04 (14) |
Zn1—N1—C7—C6 | −9.8 (3) | C25—N3—C21—C22 | −1.4 (3) |
C5—C6—C7—N1 | −178.3 (2) | Zn1—N3—C21—C22 | 175.55 (16) |
C1—C6—C7—N1 | −1.5 (4) | N3—C21—C22—C23 | 1.6 (3) |
C7—N1—C8—C9 | −30.6 (3) | C21—C22—C23—C24 | −1.2 (3) |
Zn1—N1—C8—C9 | 155.77 (17) | C22—C23—C24—C25 | 0.7 (3) |
C7—N1—C8—C13 | 153.21 (19) | C21—N3—C25—C24 | 0.9 (3) |
Zn1—N1—C8—C13 | −20.4 (2) | Zn1—N3—C25—C24 | −176.16 (16) |
C13—C8—C9—C10 | −1.4 (3) | C23—C24—C25—N3 | −0.5 (3) |
N1—C8—C9—C10 | −177.44 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
C25—H25A···O1 | 0.93 | 2.58 | 3.156 (3) | 121 |
C23—H23A···O2i | 0.93 | 2.54 | 3.211 (3) | 129 |
C18—H18A···Cg1ii | 0.93 | 2.87 | 3.537 (2) | 130 |
Symmetry codes: (i) x, −y, z−1/2; (ii) x+1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C20H14N2O2)(C5H5N)] |
Mr | 458.80 |
Crystal system, space group | Monoclinic, Cc |
Temperature (K) | 100 |
a, b, c (Å) | 17.8611 (3), 11.9929 (3), 9.4946 (2) |
β (°) | 95.540 (1) |
V (Å3) | 2024.30 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.24 |
Crystal size (mm) | 0.53 × 0.38 × 0.21 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.588, 0.778 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 31548, 11416, 9121 |
Rint | 0.047 |
(sin θ/λ)max (Å−1) | 0.904 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.104, 1.07 |
No. of reflections | 11416 |
No. of parameters | 280 |
No. of restraints | 2 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.87, −0.92 |
Absolute structure | Flack (1983), with 5258 Friedel pairs |
Absolute structure parameter | 0.014 (7) |
Computer programs: APEX2 (Bruker, 2005), APEX2, SAINT (Bruker, 2005), SHELXTL (Sheldrick, 1998), SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2003).
Zn1—O2 | 1.9637 (14) | Zn1—N1 | 2.0956 (16) |
Zn1—O1 | 1.9707 (14) | Zn1—N2 | 2.1092 (15) |
Zn1—N3 | 2.0910 (18) | ||
O2—Zn1—O1 | 96.51 (6) | N3—Zn1—N1 | 102.65 (6) |
O2—Zn1—N3 | 103.55 (7) | O2—Zn1—N2 | 88.50 (6) |
O1—Zn1—N3 | 98.26 (6) | O1—Zn1—N2 | 158.38 (7) |
O2—Zn1—N1 | 152.21 (7) | N3—Zn1—N2 | 100.99 (6) |
O1—Zn1—N1 | 88.75 (6) | N1—Zn1—N2 | 77.55 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
C25—H25A···O1 | 0.93 | 2.58 | 3.156 (3) | 121 |
C23—H23A···O2i | 0.93 | 2.54 | 3.211 (3) | 129 |
C18—H18A···Cg1ii | 0.93 | 2.87 | 3.537 (2) | 130 |
Symmetry codes: (i) x, −y, z−1/2; (ii) x+1/2, −y+1/2, z+1/2. |
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Zinc, an element of strong interest in biology, medicine, materials and catalysis, plays important roles in various biological systems, such as neurotransmission, signal transduction and gene expression (Assaf & Chung, 1984; Berg & Shi, 1996). It is well known that zinc complexes with Schiff bases show very good activity against the leukaemic cell (Tarafder et al., 2002). Here, we report the crystal structure of the title ZnII complex, (I), with the 2,2'-{1,2-phenylenebis[nitrilomethylylide]}diphenol Schiff base.
The ZnII atom in (I) is five-coordinated by two O atoms and two N atoms in the basal plane, together with the N atom of the pyridine ring in the apical position, giving a distorted square-pyramidal geometry (Fig. 1 and Table 1). The ZnII ion is displaced from the basal plane (N1/N2/O2/O1) by 0.3975 (2) Å. The N3/C21–C25 pyridine ring is attached axially to Zn1 with the torsion angle O1—Zn1—N3—C25 = -3.93 (15)°. The bond lengths and angles in (I) have normal values (Allen et al., 1987).
An intramolecular C25—H25A···O1 interaction (Table 2 and Fig. 1) generates S(5) ring motifs (Bernstein et al., 1995). In the crystal structure, the molecules are linked by intermolecular C23—H23A···O2 interactions into wave-like chains along the c axis (Fig. 2). In addition, the crystal packing is further stabilized by weak intermolecular C—H···π interactions involving the Zn1/O1/C1/C6/C7/N1 ring (centroid Cg1) (Table 2).