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The structure of the title compound, [C(NH2)3]2[Nd2(C6H5O7)2(C2O4)(H2O)2]·7H2O, contains anionic layers in which every Nd atom is linked to three other Nd atoms by citrate anions and to one Nd atom by the centrosymmetric oxalate anion. The Nd atoms are ten-coordinated; their coordination polyhedra form pairs sharing one edge owing to bridging by O atoms of carboxyl­ate groups of citrate anions.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536806023683/ng2034sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536806023683/ng2034Isup2.hkl
Contains datablock I

CCDC reference: 618290

Key indicators

  • Single-crystal X-ray study
  • T = 298 K
  • Mean [sigma](C-C) = 0.007 Å
  • H-atom completeness 66%
  • Disorder in solvent or counterion
  • R factor = 0.033
  • wR factor = 0.074
  • Data-to-parameter ratio = 12.2

checkCIF/PLATON results

No syntax errors found



Alert level A PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O2W
Author Response: H-atoms were not located
 PROBLEM: Isolated Oxygen Atom (H-atoms Missing ?) .......        O3W
 RESPONSE: H-atoms were not located
  H-atoms were not located

PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) .......        O3W
Author Response: H-atoms were not located
 PROBLEM: Isolated Oxygen Atom (H-atoms Missing ?) .......        O3W
 RESPONSE: H-atoms were not located
  H-atoms were not located

PLAT430_ALERT_2_A Short Inter D...A Contact  O4W'   ..  O3W     ..       2.48 Ang.
Author Response: Disordered crystallization water molecules
 PROBLEM: Short Inter D...A Contact  O4W    ..  O5W     ..   2.19 Ang.
 RESPONSE: Disordered crystallization water molecules
  Disordered crystallization water molecules

PLAT430_ALERT_2_A Short Inter D...A Contact  O4W    ..  O5W     ..       2.19 Ang.
Author Response: Disordered crystallization water molecules
 PROBLEM: Short Inter D...A Contact  O4W    ..  O5W     ..   2.19 Ang.
 RESPONSE: Disordered crystallization water molecules
  Disordered crystallization water molecules


Alert level B PLAT430_ALERT_2_B Short Inter D...A Contact O4W' .. O5W .. 2.77 Ang.
Author Response: Disordered crystallization water molecules
 PROBLEM: Short Inter D...A Contact  O4W    ..  O5W     ..   2.19 Ang.
 RESPONSE: Disordered crystallization water molecules
  Disordered crystallization water molecules

PLAT430_ALERT_2_B Short Inter D...A Contact  O2W    ..  O3      ..       2.70 Ang.
Author Response: Disordered crystallization water molecules
 PROBLEM: Short Inter D...A Contact  O4W    ..  O5W     ..   2.19 Ang.
 RESPONSE: Disordered crystallization water molecules
  Disordered crystallization water molecules

PLAT430_ALERT_2_B Short Inter D...A Contact  O2W    ..  O7      ..       2.81 Ang.
Author Response: Disordered crystallization water molecules
 PROBLEM: Short Inter D...A Contact  O4W    ..  O5W     ..   2.19 Ang.
 RESPONSE: Disordered crystallization water molecules
  Disordered crystallization water molecules

PLAT430_ALERT_2_B Short Inter D...A Contact  O5W    ..  O8      ..       2.81 Ang.
Author Response: Disordered crystallization water molecules
 PROBLEM: Short Inter D...A Contact  O4W    ..  O5W     ..   2.19 Ang.
 RESPONSE: Disordered crystallization water molecules
  Disordered crystallization water molecules


Alert level C CHEMW03_ALERT_2_C The ratio of given/expected molecular weight as calculated from the _atom_site* data lies outside the range 0.99 <> 1.01 From the CIF: _cell_formula_units_Z 1 From the CIF: _chemical_formula_weight 1037.02 TEST: Calculate formula weight from _atom_site_* atom mass num sum C 12.01 16.00 192.18 H 1.01 26.00 26.21 N 14.01 6.00 84.04 O 16.00 27.00 431.97 Nd 144.24 2.00 288.48 Calculated formula weight 1022.88 PLAT041_ALERT_1_C Calc. and Rep. SumFormula Strings Differ .... ? PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT043_ALERT_1_C Check Reported Molecular Weight ................ 1037.02 PLAT044_ALERT_1_C Calculated and Reported Dx Differ .............. ? PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 1.02 PLAT068_ALERT_1_C Reported F000 Differs from Calcd (or Missing)... ? PLAT302_ALERT_4_C Anion/Solvent Disorder ......................... 17.00 Perc. PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C7 - C7_a ... 1.54 Ang. PLAT430_ALERT_2_C Short Inter D...A Contact O2W .. O3W .. 2.85 Ang.
Author Response: Disordered crystallization water molecules
 PROBLEM: Short Inter D...A Contact  O4W    ..  O5W     ..   2.19 Ang.
 RESPONSE: Disordered crystallization water molecules
  Disordered crystallization water molecules

PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........          1
PLAT731_ALERT_1_C Bond    Calc     0.85(4), Rep   0.841(19) ......       2.11 su-Rat
              O1W  -H1A     1.555   1.555
PLAT735_ALERT_1_C D-H     Calc     0.85(4), Rep   0.841(19) ......       2.11 su-Rat
              O1W  -H1A     1.555   1.555
PLAT764_ALERT_4_C Overcomplete CIF Bond List Detected (Rep/Expd) .       1.28 Ratio

Alert level G FORMU01_ALERT_2_G There is a discrepancy between the atom counts in the _chemical_formula_sum and the formula from the _atom_site* data. Atom count from _chemical_formula_sum:C16 H40 N6 Nd2 O27 Atom count from the _atom_site data: C16 H26 N6 Nd2 O27 CELLZ01_ALERT_1_G Difference between formula and atom_site contents detected. CELLZ01_ALERT_1_G WARNING: H atoms missing from atom site list. Is this intentional? From the CIF: _cell_formula_units_Z 1 From the CIF: _chemical_formula_sum C16 H40 N6 Nd2 O27 TEST: Compare cell contents of formula and atom_site data atom Z*formula cif sites diff C 16.00 16.00 0.00 H 40.00 26.00 14.00 N 6.00 6.00 0.00 Nd 2.00 2.00 0.00 O 27.00 27.00 0.00
4 ALERT level A = In general: serious problem 4 ALERT level B = Potentially serious problem 14 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 9 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 12 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 4 ALERT type 4 Improvement, methodology, query or suggestion

Computing details top

Data collection: COLLECT (Nonius, 1998); cell refinement: HKL (Otwinowski & Minor, 1997); data reduction: HKL; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a); molecular graphics: SHELXTL (Sheldrick, 1997b); software used to prepare material for publication: SHELXTL.

Poly[bis(guanidinium) [diaquadi-µ3-hydrogencitrato-µ2-oxalato-dineodymium(III)] heptahydrate] top
Crystal data top
(CH6N3)2[Nd2(C6H5O7)2(C2O4)(H2O)2]·7H2OZ = 1
Mr = 1037.02F(000) = 514
Triclinic, P1Dx = 1.980 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.2017 (4) ÅCell parameters from 8223 reflections
b = 10.0447 (3) Åθ = 3.2–25.0°
c = 11.0222 (5) ŵ = 3.06 mm1
α = 87.892 (3)°T = 298 K
β = 89.505 (2)°Plate, light pink
γ = 73.464 (3)°0.16 × 0.06 × 0.02 mm
V = 869.90 (6) Å3
Data collection top
Nonius KappaCCD area-detector
diffractometer
3033 independent reflections
Radiation source: fine-focus sealed tube2588 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.055
φ and ω scansθmax = 25.0°, θmin = 3.2°
Absorption correction: multi-scan
(MULABS in PLATON; Spek, 2003)
h = 99
Tmin = 0.790, Tmax = 0.922k = 1111
8213 measured reflectionsl = 1213
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: mixed
wR(F2) = 0.074H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.0305P)2]
where P = (Fo2 + 2Fc2)/3
3033 reflections(Δ/σ)max = 0.001
248 parametersΔρmax = 1.15 e Å3
34 restraintsΔρmin = 1.01 e Å3
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
Nd0.39086 (3)0.33312 (3)0.54647 (3)0.02134 (11)
O10.6334 (5)0.1586 (3)0.4271 (3)0.0265 (9)
H10.609 (6)0.086 (3)0.445 (4)0.018 (14)*
H1A0.730 (5)0.318 (4)0.637 (5)0.022*
H1B0.721 (5)0.190 (2)0.675 (5)0.022*
O20.3158 (5)0.2488 (4)0.3549 (4)0.0325 (9)
O30.3757 (6)0.2243 (5)0.1602 (4)0.0589 (13)
O40.5334 (4)0.4418 (3)0.3896 (3)0.0245 (8)
O50.7276 (5)0.5007 (3)0.2791 (4)0.0350 (10)
O60.5883 (5)0.0848 (3)0.4046 (4)0.0394 (11)
O70.6572 (5)0.2009 (3)0.2389 (3)0.0306 (9)
O80.0905 (4)0.3351 (3)0.5691 (3)0.0286 (9)
O90.1821 (4)0.4568 (3)0.5463 (4)0.0316 (9)
O1W0.6641 (5)0.2722 (4)0.6632 (4)0.0333 (9)
O2W0.5457 (8)0.2426 (7)0.0481 (5)0.0881 (19)
O3W0.1243 (11)0.0616 (8)0.0915 (8)0.131 (3)
O4W0.127 (4)0.042 (4)0.345 (2)0.128 (6)0.50
O4W'0.152 (4)0.024 (4)0.296 (2)0.128 (6)0.50
O5W0.010 (2)0.0992 (17)0.5153 (18)0.149 (6)0.50
N10.0516 (7)0.4560 (6)0.1574 (5)0.0514 (15)
H1C0.05150.46770.18130.062*
H1D0.11890.37340.15140.062*
N20.2635 (7)0.5457 (6)0.0876 (5)0.0556 (16)
H2A0.32910.46310.07820.067*
H2B0.29950.61650.06960.067*
N30.0046 (8)0.6918 (6)0.1386 (6)0.0658 (18)
H3C0.09870.70480.16240.079*
H3D0.04190.76190.12040.079*
C10.6111 (7)0.1685 (5)0.2990 (5)0.0219 (11)
C20.4193 (7)0.2173 (5)0.2686 (5)0.0274 (12)
C30.6988 (7)0.2752 (5)0.2500 (5)0.0302 (13)
H3A0.82070.23520.25900.036*
H3B0.67480.29070.16380.036*
C40.6496 (7)0.4141 (5)0.3087 (5)0.0250 (12)
C50.6940 (7)0.0280 (5)0.2420 (5)0.0285 (13)
H5A0.66640.03650.15620.034*
H5B0.81650.00790.24920.034*
C60.6420 (7)0.0929 (5)0.2966 (5)0.0254 (12)
C70.0251 (7)0.4399 (5)0.5335 (5)0.0252 (12)
C80.1062 (9)0.5641 (8)0.1300 (6)0.0495 (17)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Nd0.01783 (16)0.01596 (15)0.02981 (18)0.00419 (11)0.00271 (11)0.00103 (10)
O10.032 (2)0.0182 (18)0.030 (2)0.0082 (16)0.0035 (17)0.0016 (15)
O20.026 (2)0.038 (2)0.037 (2)0.0118 (17)0.0010 (19)0.0050 (17)
O30.049 (3)0.082 (3)0.033 (3)0.003 (3)0.008 (2)0.009 (2)
O40.024 (2)0.0199 (17)0.029 (2)0.0064 (15)0.0076 (17)0.0032 (15)
O50.040 (2)0.0208 (19)0.050 (3)0.0169 (18)0.016 (2)0.0037 (17)
O60.057 (3)0.0217 (19)0.041 (3)0.0135 (19)0.021 (2)0.0036 (16)
O70.038 (2)0.0168 (18)0.038 (2)0.0089 (16)0.0008 (18)0.0060 (16)
O80.0176 (19)0.0215 (18)0.044 (2)0.0017 (16)0.0004 (17)0.0065 (16)
O90.020 (2)0.0267 (19)0.047 (3)0.0071 (16)0.0010 (18)0.0069 (17)
O1W0.029 (2)0.031 (2)0.042 (2)0.0118 (17)0.0060 (18)0.0056 (18)
O2W0.099 (4)0.128 (5)0.057 (3)0.064 (4)0.011 (3)0.004 (3)
O3W0.114 (6)0.131 (5)0.144 (6)0.032 (5)0.023 (5)0.021 (5)
O4W0.109 (8)0.146 (8)0.157 (12)0.080 (6)0.015 (9)0.007 (9)
O4W'0.109 (8)0.146 (8)0.157 (12)0.080 (6)0.015 (9)0.007 (9)
O5W0.145 (10)0.128 (9)0.186 (11)0.057 (8)0.022 (8)0.013 (8)
N10.034 (3)0.063 (4)0.055 (4)0.012 (3)0.004 (3)0.006 (3)
N20.036 (3)0.055 (3)0.074 (4)0.008 (3)0.017 (3)0.004 (3)
N30.052 (4)0.056 (4)0.082 (5)0.002 (3)0.022 (4)0.013 (3)
C10.027 (3)0.016 (2)0.022 (3)0.006 (2)0.005 (2)0.003 (2)
C20.033 (3)0.023 (3)0.027 (3)0.010 (2)0.002 (3)0.001 (2)
C30.038 (3)0.024 (3)0.033 (3)0.014 (2)0.015 (3)0.007 (2)
C40.027 (3)0.022 (3)0.028 (3)0.009 (2)0.001 (2)0.004 (2)
C50.035 (3)0.016 (2)0.034 (3)0.007 (2)0.011 (3)0.005 (2)
C60.019 (3)0.025 (3)0.030 (3)0.003 (2)0.002 (2)0.000 (2)
C70.019 (3)0.023 (3)0.034 (3)0.006 (2)0.002 (2)0.003 (2)
C80.039 (4)0.074 (5)0.034 (4)0.012 (4)0.002 (3)0.002 (3)
Geometric parameters (Å, º) top
Nd—O12.626 (3)O9—Ndiii2.499 (3)
Nd—O22.451 (4)O1W—H1A0.841 (19)
Nd—O42.470 (3)O1W—H1B0.832 (19)
Nd—O82.469 (3)O4W—O4W'0.59 (5)
Nd—O6i2.490 (3)N1—C81.312 (8)
Nd—O4ii2.630 (3)N1—H1C0.8600
Nd—O5ii2.590 (4)N1—H1D0.8600
Nd—O6i2.490 (3)N2—C81.334 (8)
Nd—O7i2.751 (4)N2—H2A0.8600
Nd—O9iii2.499 (3)N2—H2B0.8600
Nd—O1w2.503 (4)N3—C81.322 (9)
O1—C11.421 (6)N3—H3C0.8600
O1—H10.82 (2)N3—H3D0.8600
O2—C21.257 (6)C1—C31.532 (6)
O3—C21.244 (7)C1—C51.536 (7)
O4—C41.278 (6)C1—C21.545 (8)
O4—Ndii2.630 (3)C3—C41.506 (7)
O5—C41.251 (6)C3—H3A0.9700
O5—Ndii2.590 (4)C3—H3B0.9700
O6—C61.264 (6)C4—Ndii2.986 (5)
O6—Ndi2.490 (3)C5—C61.502 (7)
O7—C61.252 (6)C5—H5A0.9700
O7—Ndi2.751 (4)C5—H5B0.9700
O8—C71.253 (6)C6—Ndi2.990 (5)
O9—C71.257 (6)C7—C7iii1.544 (9)
O2—Nd—O874.68 (13)C4ii—Nd—C6i111.20 (14)
O2—Nd—O475.74 (12)C1—O1—Nd114.2 (3)
O8—Nd—O4131.01 (12)C1—O1—H1102 (4)
O2—Nd—O6i76.40 (13)Nd—O1—H199 (4)
O8—Nd—O6i77.01 (12)C2—O2—Nd122.3 (3)
O4—Nd—O6i131.17 (12)C4—O4—Nd142.8 (3)
O2—Nd—O9iii77.03 (13)C4—O4—Ndii93.1 (3)
O8—Nd—O9iii65.56 (10)Nd—O4—Ndii115.56 (13)
O4—Nd—O9iii70.31 (11)C4—O5—Ndii95.7 (3)
O6i—Nd—O9iii138.52 (13)C6—O6—Ndi100.5 (3)
O2—Nd—O1W131.35 (13)C6—O7—Ndi88.4 (3)
O8—Nd—O1W140.95 (12)C7—O8—Nd119.7 (3)
O4—Nd—O1W87.31 (12)C7—O9—Ndiii120.1 (3)
O6i—Nd—O1W82.04 (13)Nd—O1W—H1A112 (3)
O9iii—Nd—O1W138.94 (12)Nd—O1W—H1B121 (3)
O2—Nd—O5ii143.69 (13)H1A—O1W—H1B108 (3)
O8—Nd—O5ii74.54 (12)C8—N1—H1C120.0
O4—Nd—O5ii111.83 (10)C8—N1—H1D120.0
O6i—Nd—O5ii114.43 (12)H1C—N1—H1D120.0
O9iii—Nd—O5ii73.02 (13)C8—N2—H2A120.0
O1W—Nd—O5ii84.95 (13)C8—N2—H2B120.0
O2—Nd—O162.10 (12)H2A—N2—H2B120.0
O8—Nd—O1128.18 (11)C8—N3—H3C120.0
O4—Nd—O165.04 (10)C8—N3—H3D120.0
O6i—Nd—O166.60 (11)H3C—N3—H3D120.0
O9iii—Nd—O1124.78 (12)O1—C1—C3107.0 (4)
O1W—Nd—O169.36 (12)O1—C1—C5110.9 (4)
O5ii—Nd—O1154.08 (12)C3—C1—C5109.1 (4)
O2—Nd—O4ii134.82 (11)O1—C1—C2109.5 (4)
O8—Nd—O4ii116.37 (11)C3—C1—C2110.3 (4)
O4—Nd—O4ii64.44 (13)C5—C1—C2110.0 (4)
O6i—Nd—O4ii147.12 (13)O3—C2—O2123.6 (5)
O9iii—Nd—O4ii70.33 (11)O3—C2—C1118.3 (5)
O1W—Nd—O4ii68.98 (12)O2—C2—C1118.1 (5)
O5ii—Nd—O4ii49.72 (10)C4—C3—C1116.3 (4)
O1—Nd—O4ii114.22 (10)C4—C3—H3A108.2
O2—Nd—O7i119.07 (11)C1—C3—H3A108.2
O8—Nd—O7i69.27 (11)C4—C3—H3B108.2
O4—Nd—O7i159.32 (12)C1—C3—H3B108.2
O6i—Nd—O7i48.99 (11)H3A—C3—H3B107.4
O9iii—Nd—O7i124.91 (11)O5—C4—O4120.5 (4)
O1W—Nd—O7i72.08 (12)O5—C4—C3118.8 (5)
O5ii—Nd—O7i65.82 (10)O4—C4—C3120.7 (4)
O1—Nd—O7i107.45 (10)O5—C4—Ndii59.6 (3)
O4ii—Nd—O7i105.20 (10)O4—C4—Ndii61.6 (2)
O2—Nd—C4ii144.15 (13)C3—C4—Ndii169.4 (4)
O8—Nd—C4ii94.10 (13)C6—C5—C1115.3 (4)
O4—Nd—C4ii87.76 (13)C6—C5—H5A108.4
O6i—Nd—C4ii135.08 (14)C1—C5—H5A108.4
O9iii—Nd—C4ii67.42 (14)C6—C5—H5B108.4
O1W—Nd—C4ii78.06 (14)C1—C5—H5B108.4
O5ii—Nd—C4ii24.63 (12)H5A—C5—H5B107.5
O1—Nd—C4ii137.71 (13)O7—C6—O6120.7 (4)
O4ii—Nd—C4ii25.30 (12)O7—C6—C5121.3 (5)
O7i—Nd—C4ii86.47 (12)O6—C6—C5117.9 (5)
O2—Nd—C6i96.48 (13)O7—C6—Ndi66.9 (3)
O8—Nd—C6i68.71 (12)O6—C6—Ndi55.0 (2)
O4—Nd—C6i153.03 (13)C5—C6—Ndi164.8 (4)
O6i—Nd—C6i24.55 (13)O8—C7—O9125.6 (4)
O9iii—Nd—C6i133.91 (13)O8—C7—C7iii118.6 (6)
O1W—Nd—C6i78.57 (13)O9—C7—C7iii115.8 (5)
O5ii—Nd—C6i89.88 (13)N1—C8—N3120.9 (6)
O1—Nd—C6i88.38 (12)N1—C8—N2119.9 (7)
O4ii—Nd—C6i128.66 (13)N3—C8—N2119.2 (7)
O7i—Nd—C6i24.74 (12)
Symmetry codes: (i) x+1, y, z+1; (ii) x+1, y+1, z+1; (iii) x, y+1, z+1.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1—H1···O60.82 (2)1.85 (3)2.596 (5)151 (5)
O1W—H1A···O9iv0.84 (2)1.99 (2)2.796 (5)162 (4)
N1—H1C···O5v0.862.052.893 (7)166
N1—H1D···O30.862.212.993 (7)151
N2—H2B···O2Wvi0.862.162.995 (8)164
N3—H3C···O7vii0.862.142.964 (7)161
Symmetry codes: (iv) x+1, y, z; (v) x1, y, z; (vi) x+1, y+1, z; (vii) x1, y+1, z.
 

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