A second orthorhombic polymorph (β) of 1
H-benzimidazole, C
7H
6N
2, metastable at room temperature, has been obtained. It has a melting point of 431 K and a crystal density of 1.27 Mg m
−3. At room temperature, the crystals transform into the well known orthorhombic α form, with a melting point of 445 K. In both polymorphs, benzimidazole molecules are connected into polymeric chains
via N—H
N hydrogen bonds. However, the mode of aromatic ring interactions differs significantly in the two crystalline forms. In the α form, the molecules show edge-to-face interactions, whereas in the new β form, a sandwich–herringbone arrangement of the aromatic molecules is observed.
Supporting information
CCDC reference: 294086
Key indicators
- Single-crystal X-ray study
- T = 295 K
- Mean (C-C) = 0.002 Å
- R factor = 0.053
- wR factor = 0.116
- Data-to-parameter ratio = 12.4
checkCIF/PLATON results
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Alert level C
PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ?
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0 ALERT level B = Potentially serious problem
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Data collection: CrysAlis CCD (Oxford Diffraction, 2004); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: Stereochemical Workstation Operation Manual (Siemens, 1989) and
Mercury (Version 1.3; Bruno et al., 2002); software used to prepare material for publication: SHELXL97.
Crystal data top
C7H6N2 | Dx = 1.271 Mg m−3 |
Mr = 118.14 | Melting point = 431–432 K |
Orthorhombic, Pccn | Mo Kα radiation, λ = 0.71073 Å |
a = 9.7257 (11) Å | Cell parameters from 2816 reflections |
b = 16.6879 (17) Å | θ = 4–25° |
c = 7.6056 (11) Å | µ = 0.08 mm−1 |
V = 1234.4 (3) Å3 | T = 295 K |
Z = 8 | Needle, colourless |
F(000) = 496 | 0.6 × 0.2 × 0.02 mm |
Data collection top
Kuma KM4 CCD κ geometry diffractometer | 887 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.028 |
Graphite monochromator | θmax = 25.0°, θmin = 4.2° |
ω scans | h = −11→9 |
4312 measured reflections | k = −19→14 |
1091 independent reflections | l = −9→9 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.116 | H-atom parameters constrained |
S = 1.17 | w = 1/[σ2(Fo2) + (0.0569P)2] where P = (Fo2 + 2Fc2)/3 |
1091 reflections | (Δ/σ)max < 0.001 |
88 parameters | Δρmax = 0.11 e Å−3 |
0 restraints | Δρmin = −0.17 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.85139 (16) | 0.47227 (8) | 0.19758 (18) | 0.0516 (5) | |
H1 | 0.7676 | 0.4887 | 0.1995 | 0.068 (6)* | |
C2 | 0.95811 (19) | 0.50402 (13) | 0.2859 (2) | 0.0553 (5) | |
H2 | 0.9494 | 0.5484 | 0.3590 | 0.063 (6)* | |
N3 | 1.07556 (15) | 0.46717 (9) | 0.26031 (18) | 0.0559 (5) | |
C4 | 1.1264 (2) | 0.34826 (11) | 0.0648 (2) | 0.0597 (6) | |
H4 | 1.2198 | 0.3455 | 0.0904 | 0.074 (6)* | |
C5 | 1.0668 (2) | 0.29575 (12) | −0.0519 (3) | 0.0666 (6) | |
H5 | 1.1210 | 0.2571 | −0.1061 | 0.077 (6)* | |
C6 | 0.9266 (2) | 0.29926 (12) | −0.0908 (3) | 0.0652 (6) | |
H6 | 0.8898 | 0.2633 | −0.1714 | 0.077 (6)* | |
C7 | 0.8420 (2) | 0.35477 (11) | −0.0127 (2) | 0.0594 (6) | |
H7 | 0.7482 | 0.3564 | −0.0366 | 0.063 (6)* | |
C8 | 0.90272 (17) | 0.40831 (10) | 0.1034 (2) | 0.0441 (5) | |
C9 | 1.04281 (17) | 0.40549 (10) | 0.1431 (2) | 0.0457 (5) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0376 (10) | 0.0607 (10) | 0.0566 (9) | 0.0025 (8) | 0.0029 (7) | 0.0033 (8) |
C2 | 0.0533 (13) | 0.0633 (13) | 0.0493 (10) | 0.0002 (10) | 0.0039 (9) | −0.0035 (10) |
N3 | 0.0441 (10) | 0.0676 (11) | 0.0559 (9) | −0.0002 (8) | −0.0025 (7) | −0.0068 (8) |
C4 | 0.0465 (13) | 0.0631 (13) | 0.0695 (12) | 0.0054 (9) | 0.0008 (10) | −0.0016 (11) |
C5 | 0.0692 (15) | 0.0547 (13) | 0.0759 (13) | 0.0053 (11) | 0.0066 (11) | −0.0059 (11) |
C6 | 0.0742 (15) | 0.0525 (13) | 0.0688 (12) | −0.0090 (11) | −0.0079 (11) | −0.0062 (10) |
C7 | 0.0497 (13) | 0.0564 (12) | 0.0721 (12) | −0.0076 (10) | −0.0090 (10) | 0.0053 (10) |
C8 | 0.0407 (11) | 0.0456 (11) | 0.0460 (9) | −0.0020 (8) | 0.0029 (8) | 0.0083 (8) |
C9 | 0.0416 (12) | 0.0493 (11) | 0.0461 (9) | −0.0036 (8) | 0.0026 (8) | 0.0047 (9) |
Geometric parameters (Å, º) top
N1—C2 | 1.345 (2) | C4—H4 | 0.9300 |
N1—C8 | 1.3791 (19) | C5—C6 | 1.396 (3) |
N1—H1 | 0.8600 | C5—H5 | 0.9300 |
C2—N3 | 1.312 (2) | C6—C7 | 1.374 (3) |
C2—H2 | 0.9300 | C6—H6 | 0.9300 |
N3—C9 | 1.398 (2) | C7—C8 | 1.388 (2) |
C4—C5 | 1.376 (2) | C7—H7 | 0.9300 |
C4—C9 | 1.389 (2) | C8—C9 | 1.396 (2) |
| | | |
C2—N1—C8 | 106.55 (15) | C7—C6—C5 | 121.44 (19) |
C2—N1—H1 | 126.7 | C7—C6—H6 | 119.3 |
C8—N1—H1 | 126.7 | C5—C6—H6 | 119.3 |
N3—C2—N1 | 114.41 (17) | C6—C7—C8 | 116.97 (18) |
N3—C2—H2 | 122.8 | C6—C7—H7 | 121.5 |
N1—C2—H2 | 122.8 | C8—C7—H7 | 121.5 |
C2—N3—C9 | 103.96 (15) | N1—C8—C7 | 132.41 (17) |
C5—C4—C9 | 117.90 (18) | N1—C8—C9 | 105.48 (14) |
C5—C4—H4 | 121.0 | C7—C8—C9 | 122.09 (16) |
C9—C4—H4 | 121.0 | C4—C9—C8 | 120.11 (16) |
C4—C5—C6 | 121.47 (19) | C4—C9—N3 | 130.27 (16) |
C4—C5—H5 | 119.3 | C8—C9—N3 | 109.60 (14) |
C6—C5—H5 | 119.3 | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···N3i | 0.86 | 2.03 | 2.884 (2) | 172 |
Symmetry code: (i) x−1/2, −y+1, −z+1/2. |