Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536803001405/na6194sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536803001405/na6194Isup2.hkl |
CCDC reference: 204712
Key indicators
- Single-crystal X-ray study
- T = 120 K
- Mean (C-C) = 0.004 Å
- R factor = 0.047
- wR factor = 0.124
- Data-to-parameter ratio = 13.6
checkCIF results
No syntax errors found ADDSYM reports no extra symmetry
Alert Level C:
RINTA_01 Alert C The value of Rint is greater than 0.10 Rint given 0.105
0 Alert Level A = Potentially serious problem
0 Alert Level B = Potential problem
1 Alert Level C = Please check
The title compound was obtained from Key Organics Ltd and crystals were grown from ethanol solution.
All H atoms were included in the refinement, at calculated positions, as riding models, with C—H set at 0.95 (Ar—H) and 0.99 Å (CH2), while the isotropic displacement parameters were set equal to 1.25Ueq of the preceeding normal atom except for the 2-amino H atoms, which were located on difference syntheses and for which both positional and displacement parameters refined. An Rint value of 0.105 was the result of weak high-angle data.
Data collection: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); cell refinement: DENZO and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLUTON94 (Spek, 1994) and PLATON97 (Spek, 1997); software used to prepare material for publication: SHELXL97.
C21H21ClN4S | Dx = 1.351 Mg m−3 |
Mr = 396.93 | Melting point: 461-463 K K |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 14.645 (3) Å | Cell parameters from 9868 reflections |
b = 6.4302 (13) Å | θ = 2.9–27.5° |
c = 20.954 (4) Å | µ = 0.32 mm−1 |
β = 98.67 (3)° | T = 120 K |
V = 1950.8 (7) Å3 | Plate, colourless |
Z = 4 | 0.40 × 0.12 × 0.02 mm |
F(000) = 832 |
Bruker Nonius KappaCCD area-detector diffractometer | 3422 independent reflections |
Radiation source: Bruker Nonius FR591 rotating anode | 2637 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.105 |
Detector resolution: 9.091 pixels mm-1 | θmax = 25.0°, θmin = 3.2° |
ϕ and ω scans | h = −17→16 |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | k = −7→7 |
Tmin = 0.884, Tmax = 0.994 | l = −24→24 |
14972 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0616P)2 + 0.0316P] where P = (Fo2 + 2Fc2)/3 |
3422 reflections | (Δ/σ)max < 0.001 |
252 parameters | Δρmax = 0.49 e Å−3 |
0 restraints | Δρmin = −0.48 e Å−3 |
C21H21ClN4S | V = 1950.8 (7) Å3 |
Mr = 396.93 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 14.645 (3) Å | µ = 0.32 mm−1 |
b = 6.4302 (13) Å | T = 120 K |
c = 20.954 (4) Å | 0.40 × 0.12 × 0.02 mm |
β = 98.67 (3)° |
Bruker Nonius KappaCCD area-detector diffractometer | 3422 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 2637 reflections with I > 2σ(I) |
Tmin = 0.884, Tmax = 0.994 | Rint = 0.105 |
14972 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.49 e Å−3 |
3422 reflections | Δρmin = −0.48 e Å−3 |
252 parameters |
Geometry. Mean plane data ex SHELXL97 for molecule (I) ############################################ Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane) - 11.9374 (0.0104) x − 1.3699 (0.0065) y + 13.7333 (0.0171) z = 1.8469 (0.0113) * 0.0089 (0.0016) C51 * −0.0072 (0.0016) C52 * 0.0001 (0.0017) C53 * 0.0054 (0.0018) C54 * −0.0036 (0.0018) C55 * −0.0035 (0.0017) C56 Rms deviation of fitted atoms = 0.0056 − 7.7124 (0.0118) x + 4.3870 (0.0044) y + 12.1687 (0.0154) z = 5.5470 (0.0059) Angle to previous plane (with approximate e.s.d.) = 56.14 (0.08) * 0.0177 (0.0014) N1 * 0.0091 (0.0015) C2 * −0.0246 (0.0013) N3 * 0.0144 (0.0014) C4 * 0.0115 (0.0014) C5 * −0.0282 (0.0014) C6 Rms deviation of fitted atoms = 0.0189 − 2.0317 (0.0134) x − 1.9801 (0.0061) y + 19.9358 (0.0122) z = 8.2404 (0.0054) Angle to previous plane (with approximate e.s.d.) = 70.10 (0.07) * −0.0041 (0.0015) C41 * −0.0002 (0.0016) C42 * 0.0039 (0.0016) C43 * −0.0032 (0.0017) C44 * −0.0013 (0.0017) C45 * 0.0049 (0.0017) C46 Rms deviation of fitted atoms = 0.0034 |
x | y | z | Uiso*/Ueq | ||
N1 | 0.14042 (13) | 0.7168 (3) | 0.28787 (9) | 0.0198 (4) | |
C2 | 0.07163 (16) | 0.5807 (3) | 0.29266 (11) | 0.0189 (5) | |
N21 | −0.00284 (14) | 0.5865 (3) | 0.24671 (10) | 0.0240 (5) | |
H21 | −0.051 (2) | 0.476 (4) | 0.2458 (13) | 0.046 (8)* | |
H22 | −0.0060 (17) | 0.671 (4) | 0.2138 (13) | 0.025 (7)* | |
N3 | 0.07005 (12) | 0.4394 (3) | 0.33982 (9) | 0.0178 (4) | |
C4 | 0.14173 (15) | 0.4429 (3) | 0.38718 (10) | 0.0162 (5) | |
C5 | 0.21829 (15) | 0.5731 (3) | 0.38854 (10) | 0.0180 (5) | |
C6 | 0.21426 (16) | 0.7077 (3) | 0.33419 (11) | 0.0178 (5) | |
S4 | 0.13523 (4) | 0.27665 (9) | 0.45470 (3) | 0.02177 (19) | |
C41 | 0.02631 (16) | 0.1556 (3) | 0.43127 (10) | 0.0198 (5) | |
C42 | 0.02266 (17) | −0.0500 (3) | 0.41067 (11) | 0.0232 (6) | |
H42 | 0.0784 | −0.1241 | 0.4090 | 0.029* | |
C43 | −0.06106 (17) | −0.1474 (4) | 0.39268 (11) | 0.0260 (6) | |
H43 | −0.0634 | −0.2882 | 0.3788 | 0.033* | |
C44 | −0.14108 (17) | −0.0380 (4) | 0.39503 (11) | 0.0267 (6) | |
Cl4 | −0.24680 (5) | −0.16362 (12) | 0.37349 (4) | 0.0460 (2) | |
C45 | −0.13980 (17) | 0.1676 (4) | 0.41568 (12) | 0.0284 (6) | |
H45 | −0.1958 | 0.2409 | 0.4171 | 0.035* | |
C46 | −0.05564 (17) | 0.2630 (4) | 0.43404 (12) | 0.0241 (6) | |
H46 | −0.0535 | 0.4030 | 0.4487 | 0.030* | |
C51 | 0.29093 (15) | 0.5852 (3) | 0.44639 (10) | 0.0189 (5) | |
C52 | 0.34052 (16) | 0.4095 (4) | 0.47079 (11) | 0.0233 (5) | |
H52 | 0.3309 | 0.2809 | 0.4485 | 0.029* | |
C53 | 0.40341 (17) | 0.4205 (4) | 0.52708 (12) | 0.0324 (6) | |
H53 | 0.4360 | 0.2993 | 0.5434 | 0.040* | |
C54 | 0.41896 (17) | 0.6068 (4) | 0.55958 (12) | 0.0346 (7) | |
H54 | 0.4619 | 0.6142 | 0.5983 | 0.043* | |
C55 | 0.37173 (17) | 0.7826 (4) | 0.53540 (13) | 0.0329 (6) | |
H55 | 0.3828 | 0.9113 | 0.5574 | 0.041* | |
C56 | 0.30855 (17) | 0.7729 (4) | 0.47952 (12) | 0.0251 (6) | |
H56 | 0.2767 | 0.8952 | 0.4634 | 0.031* | |
N61 | 0.28692 (13) | 0.8425 (3) | 0.32815 (9) | 0.0218 (5) | |
C62 | 0.37844 (16) | 0.7465 (4) | 0.32875 (12) | 0.0248 (6) | |
H621 | 0.3806 | 0.6774 | 0.2868 | 0.031* | |
H622 | 0.3882 | 0.6390 | 0.3629 | 0.031* | |
C63 | 0.45467 (17) | 0.9058 (4) | 0.34073 (12) | 0.0298 (6) | |
H631 | 0.5148 | 0.8381 | 0.3384 | 0.037* | |
H632 | 0.4568 | 0.9649 | 0.3846 | 0.037* | |
C64 | 0.43878 (18) | 1.0804 (4) | 0.29071 (13) | 0.0341 (6) | |
H641 | 0.4863 | 1.1897 | 0.3013 | 0.043* | |
H642 | 0.4440 | 1.0248 | 0.2473 | 0.043* | |
C65 | 0.34343 (18) | 1.1725 (4) | 0.29070 (13) | 0.0306 (6) | |
H651 | 0.3319 | 1.2802 | 0.2567 | 0.038* | |
H652 | 0.3409 | 1.2404 | 0.3328 | 0.038* | |
C66 | 0.26846 (18) | 1.0067 (4) | 0.27882 (12) | 0.0298 (6) | |
H661 | 0.2074 | 1.0703 | 0.2808 | 0.037* | |
H662 | 0.2674 | 0.9458 | 0.2353 | 0.037* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0196 (11) | 0.0188 (10) | 0.0202 (11) | −0.0017 (8) | 0.0005 (8) | 0.0009 (8) |
C2 | 0.0226 (13) | 0.0166 (11) | 0.0175 (12) | 0.0011 (10) | 0.0033 (10) | −0.0027 (9) |
N21 | 0.0262 (12) | 0.0231 (11) | 0.0205 (12) | −0.0035 (9) | −0.0035 (9) | 0.0037 (9) |
N3 | 0.0198 (11) | 0.0170 (10) | 0.0164 (10) | 0.0000 (8) | 0.0023 (8) | 0.0003 (8) |
C4 | 0.0182 (13) | 0.0155 (11) | 0.0154 (12) | 0.0021 (9) | 0.0043 (10) | −0.0019 (9) |
C5 | 0.0180 (12) | 0.0178 (11) | 0.0183 (12) | 0.0020 (9) | 0.0030 (10) | 0.0002 (9) |
C6 | 0.0168 (13) | 0.0157 (11) | 0.0210 (13) | 0.0008 (9) | 0.0027 (10) | −0.0011 (9) |
S4 | 0.0201 (4) | 0.0257 (3) | 0.0189 (3) | −0.0032 (2) | 0.0012 (3) | 0.0057 (2) |
C41 | 0.0218 (13) | 0.0256 (13) | 0.0121 (12) | −0.0041 (10) | 0.0035 (10) | 0.0038 (9) |
C42 | 0.0269 (14) | 0.0218 (13) | 0.0224 (13) | 0.0002 (10) | 0.0087 (11) | 0.0021 (10) |
C43 | 0.0344 (16) | 0.0253 (13) | 0.0194 (13) | −0.0049 (11) | 0.0076 (11) | −0.0029 (10) |
C44 | 0.0248 (14) | 0.0374 (15) | 0.0183 (13) | −0.0119 (11) | 0.0048 (10) | −0.0015 (11) |
Cl4 | 0.0312 (4) | 0.0638 (5) | 0.0427 (5) | −0.0213 (3) | 0.0050 (3) | −0.0146 (4) |
C45 | 0.0210 (15) | 0.0371 (15) | 0.0279 (14) | 0.0020 (11) | 0.0062 (11) | 0.0015 (11) |
C46 | 0.0261 (15) | 0.0228 (13) | 0.0248 (14) | 0.0001 (10) | 0.0081 (11) | 0.0010 (10) |
C51 | 0.0136 (12) | 0.0252 (12) | 0.0185 (12) | −0.0021 (10) | 0.0038 (9) | 0.0017 (10) |
C52 | 0.0205 (13) | 0.0260 (12) | 0.0236 (13) | −0.0028 (10) | 0.0038 (10) | 0.0042 (10) |
C53 | 0.0205 (14) | 0.0441 (16) | 0.0316 (15) | 0.0029 (12) | 0.0010 (12) | 0.0140 (13) |
C54 | 0.0225 (15) | 0.0568 (18) | 0.0219 (14) | −0.0034 (13) | −0.0046 (11) | −0.0011 (13) |
C55 | 0.0223 (15) | 0.0425 (15) | 0.0332 (15) | −0.0071 (12) | 0.0015 (12) | −0.0139 (13) |
C56 | 0.0225 (14) | 0.0273 (13) | 0.0263 (14) | −0.0020 (10) | 0.0060 (11) | −0.0017 (11) |
N61 | 0.0200 (11) | 0.0202 (10) | 0.0244 (11) | −0.0014 (8) | 0.0010 (9) | 0.0058 (8) |
C62 | 0.0236 (15) | 0.0265 (13) | 0.0252 (14) | 0.0001 (10) | 0.0064 (11) | 0.0031 (10) |
C63 | 0.0238 (14) | 0.0351 (14) | 0.0308 (14) | −0.0040 (11) | 0.0056 (11) | 0.0007 (12) |
C64 | 0.0373 (17) | 0.0370 (14) | 0.0288 (14) | −0.0169 (13) | 0.0073 (12) | −0.0022 (12) |
C65 | 0.0387 (17) | 0.0252 (13) | 0.0271 (14) | −0.0052 (11) | 0.0029 (12) | 0.0077 (11) |
C66 | 0.0316 (15) | 0.0249 (13) | 0.0311 (15) | −0.0035 (11) | −0.0010 (12) | 0.0112 (11) |
N1—C6 | 1.341 (3) | C52—C53 | 1.385 (3) |
N1—C2 | 1.350 (3) | C52—H52 | 0.95 |
C2—N21 | 1.342 (3) | C53—C54 | 1.380 (4) |
C2—N3 | 1.345 (3) | C53—H53 | 0.95 |
N21—H21 | 1.00 (3) | C54—C55 | 1.381 (4) |
N21—H22 | 0.88 (3) | C54—H54 | 0.95 |
N3—C4 | 1.332 (3) | C55—C56 | 1.380 (4) |
C4—C5 | 1.396 (3) | C55—H55 | 0.95 |
C4—S4 | 1.787 (2) | C56—H56 | 0.95 |
C5—C6 | 1.425 (3) | N61—C66 | 1.474 (3) |
C5—C51 | 1.490 (3) | N61—C62 | 1.474 (3) |
C6—N61 | 1.393 (3) | C62—C63 | 1.508 (3) |
S4—C41 | 1.776 (2) | C62—H621 | 0.99 |
C41—C42 | 1.389 (3) | C62—H622 | 0.99 |
C41—C46 | 1.394 (3) | C63—C64 | 1.530 (3) |
C42—C43 | 1.378 (3) | C63—H631 | 0.99 |
C42—H42 | 0.95 | C63—H632 | 0.99 |
C43—C44 | 1.374 (4) | C64—C65 | 1.517 (4) |
C43—H43 | 0.95 | C64—H641 | 0.99 |
C44—C45 | 1.390 (3) | C64—H642 | 0.99 |
C44—Cl4 | 1.744 (2) | C65—C66 | 1.524 (3) |
C45—C46 | 1.379 (3) | C65—H651 | 0.99 |
C45—H45 | 0.95 | C65—H652 | 0.99 |
C46—H46 | 0.95 | C66—H661 | 0.99 |
C51—C56 | 1.397 (3) | C66—H662 | 0.99 |
C51—C52 | 1.398 (3) | ||
C6—N1—C2 | 116.57 (19) | C52—C53—H53 | 119.9 |
N21—C2—N3 | 116.4 (2) | C53—C54—C55 | 119.6 (2) |
N21—C2—N1 | 117.6 (2) | C53—C54—H54 | 120.2 |
N3—C2—N1 | 126.0 (2) | C55—C54—H54 | 120.2 |
C2—N21—H21 | 119.3 (16) | C56—C55—C54 | 120.6 (2) |
C2—N21—H22 | 121.6 (17) | C56—C55—H55 | 119.7 |
H21—N21—H22 | 118 (2) | C54—C55—H55 | 119.7 |
C4—N3—C2 | 115.93 (18) | C55—C56—C51 | 120.7 (2) |
N3—C4—C5 | 124.46 (19) | C55—C56—H56 | 119.7 |
N3—C4—S4 | 116.73 (16) | C51—C56—H56 | 119.7 |
C5—C4—S4 | 118.74 (17) | C6—N61—C66 | 116.59 (19) |
C4—C5—C6 | 114.3 (2) | C6—N61—C62 | 116.41 (18) |
C4—C5—C51 | 121.41 (19) | C66—N61—C62 | 112.12 (19) |
C6—C5—C51 | 123.85 (19) | N61—C62—C63 | 111.48 (19) |
N1—C6—N61 | 116.8 (2) | N61—C62—H621 | 109.3 |
N1—C6—C5 | 122.5 (2) | C63—C62—H621 | 109.3 |
N61—C6—C5 | 120.7 (2) | N61—C62—H622 | 109.3 |
C41—S4—C4 | 101.31 (11) | C63—C62—H622 | 109.3 |
C42—C41—C46 | 119.4 (2) | H621—C62—H622 | 108.0 |
C42—C41—S4 | 119.59 (18) | C62—C63—C64 | 110.6 (2) |
C46—C41—S4 | 120.96 (18) | C62—C63—H631 | 109.5 |
C43—C42—C41 | 120.6 (2) | C64—C63—H631 | 109.5 |
C43—C42—H42 | 119.7 | C62—C63—H632 | 109.5 |
C41—C42—H42 | 119.7 | C64—C63—H632 | 109.5 |
C44—C43—C42 | 119.1 (2) | H631—C63—H632 | 108.1 |
C44—C43—H43 | 120.4 | C65—C64—C63 | 109.4 (2) |
C42—C43—H43 | 120.4 | C65—C64—H641 | 109.8 |
C43—C44—C45 | 121.8 (2) | C63—C64—H641 | 109.8 |
C43—C44—Cl4 | 118.85 (19) | C65—C64—H642 | 109.8 |
C45—C44—Cl4 | 119.4 (2) | C63—C64—H642 | 109.8 |
C46—C45—C44 | 118.7 (2) | H641—C64—H642 | 108.2 |
C46—C45—H45 | 120.7 | C64—C65—C66 | 111.6 (2) |
C44—C45—H45 | 120.7 | C64—C65—H651 | 109.3 |
C45—C46—C41 | 120.5 (2) | C66—C65—H651 | 109.3 |
C45—C46—H46 | 119.8 | C64—C65—H652 | 109.3 |
C41—C46—H46 | 119.8 | C66—C65—H652 | 109.3 |
C56—C51—C52 | 118.0 (2) | H651—C65—H652 | 108.0 |
C56—C51—C5 | 120.4 (2) | N61—C66—C65 | 109.6 (2) |
C52—C51—C5 | 121.6 (2) | N61—C66—H661 | 109.8 |
C53—C52—C51 | 120.8 (2) | C65—C66—H661 | 109.8 |
C53—C52—H52 | 119.6 | N61—C66—H662 | 109.8 |
C51—C52—H52 | 119.6 | C65—C66—H662 | 109.8 |
C54—C53—C52 | 120.2 (2) | H661—C66—H662 | 108.2 |
C54—C53—H53 | 119.9 | ||
C6—N1—C2—N21 | −179.8 (2) | C44—C45—C46—C41 | 0.6 (4) |
C6—N1—C2—N3 | 0.9 (3) | C42—C41—C46—C45 | −0.9 (3) |
N21—C2—N3—C4 | −176.21 (18) | S4—C41—C46—C45 | 179.94 (18) |
N1—C2—N3—C4 | 3.2 (3) | C4—C5—C51—C56 | −118.6 (2) |
C2—N3—C4—C5 | −3.7 (3) | C6—C5—C51—C56 | 53.4 (3) |
C2—N3—C4—S4 | 173.31 (15) | C4—C5—C51—C52 | 58.6 (3) |
N3—C4—C5—C6 | 0.4 (3) | C6—C5—C51—C52 | −129.4 (2) |
S4—C4—C5—C6 | −176.55 (15) | C56—C51—C52—C53 | 1.7 (3) |
N3—C4—C5—C51 | 173.1 (2) | C5—C51—C52—C53 | −175.6 (2) |
S4—C4—C5—C51 | −3.8 (3) | C51—C52—C53—C54 | −0.9 (4) |
C2—N1—C6—N61 | 177.6 (2) | C52—C53—C54—C55 | −0.3 (4) |
C2—N1—C6—C5 | −4.5 (3) | C53—C54—C55—C56 | 0.7 (4) |
C4—C5—C6—N1 | 3.9 (3) | C54—C55—C56—C51 | 0.2 (4) |
C51—C5—C6—N1 | −168.6 (2) | C52—C51—C56—C55 | −1.3 (3) |
C4—C5—C6—N61 | −178.32 (19) | C5—C51—C56—C55 | 176.0 (2) |
C51—C5—C6—N61 | 9.2 (3) | N1—C6—N61—C66 | 11.1 (3) |
N3—C4—S4—C41 | 0.55 (18) | C5—C6—N61—C66 | −166.8 (2) |
C5—C4—S4—C41 | 177.75 (17) | N1—C6—N61—C62 | −124.9 (2) |
C4—S4—C41—C42 | 105.69 (19) | C5—C6—N61—C62 | 57.3 (3) |
C4—S4—C41—C46 | −75.2 (2) | C6—N61—C62—C63 | −164.0 (2) |
C46—C41—C42—C43 | 0.4 (3) | C66—N61—C62—C63 | 58.1 (3) |
S4—C41—C42—C43 | 179.58 (17) | N61—C62—C63—C64 | −56.0 (3) |
C41—C42—C43—C44 | 0.3 (3) | C62—C63—C64—C65 | 54.7 (3) |
C42—C43—C44—C45 | −0.6 (4) | C63—C64—C65—C66 | −55.9 (3) |
C42—C43—C44—Cl4 | −178.92 (17) | C6—N61—C66—C65 | 164.5 (2) |
C43—C44—C45—C46 | 0.1 (4) | C62—N61—C66—C65 | −57.7 (3) |
Cl4—C44—C45—C46 | 178.42 (18) | C64—C65—C66—N61 | 57.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···N1i | 1.00 (3) | 2.17 (3) | 3.130 (3) | 160 (2) |
N21—H21···N21i | 1.00 (3) | 2.63 (3) | 3.219 (3) | 118 (2) |
N21—H22···N3ii | 0.88 (3) | 2.19 (3) | 2.978 (3) | 150 (2) |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C21H21ClN4S |
Mr | 396.93 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 120 |
a, b, c (Å) | 14.645 (3), 6.4302 (13), 20.954 (4) |
β (°) | 98.67 (3) |
V (Å3) | 1950.8 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.32 |
Crystal size (mm) | 0.40 × 0.12 × 0.02 |
Data collection | |
Diffractometer | Bruker Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SORTAV; Blessing, 1995) |
Tmin, Tmax | 0.884, 0.994 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14972, 3422, 2637 |
Rint | 0.105 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.124, 1.09 |
No. of reflections | 3422 |
No. of parameters | 252 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.49, −0.48 |
Computer programs: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998), DENZO and COLLECT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLUTON94 (Spek, 1994) and PLATON97 (Spek, 1997), SHELXL97.
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···N1i | 1.00 (3) | 2.17 (3) | 3.130 (3) | 160 (2) |
N21—H21···N21i | 1.00 (3) | 2.63 (3) | 3.219 (3) | 118 (2) |
N21—H22···N3ii | 0.88 (3) | 2.19 (3) | 2.978 (3) | 150 (2) |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, y+1/2, −z+1/2. |
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We recently discussed the occurrence of N—H···S hydrogen-bonding associations in a series of nine 2-amino-4-sulfur-substituted pyrimidines (Lynch et al., 2002). In the packing motifs of the ten structures studied (one compound had two polymorphs), all displayed R22(8) hydrogen-bonded 2-aminopyrimidine dimers, to varying degrees of polymerization, whereas six packing modes additionally included N—H···S interactions, the majority being three-centre with an N—H···N interaction. The title compound, (I), prepared by the sequential addition of piperidine and 4-chlorothiophenol to 2-amino-5-phenylpyrimidine, has the appropriate S-substituent to be compared with these previously studied pyrimidine structures. In (I), the presence of the 5-phenyl ring prevents the thiophenyl group from taking on a similar conformation as in 2-amino-4-(4-chlorophenylthio)-6-morpholinopyrimidine, in which the direction of the thiophenyl group opposes that of the pyrimidine N atoms. Instead, the thiophenyl group adopts a conformation that turns it towards the heterocyclic N atoms (Fig. 1). The dihedral angle between the 5-phenyl and pyrimidine rings is 56.14 (8)°, while the dihedral angle for the thiophenyl and pyrimidine rings is 70.10 (7)°. Previously reported 2-amino-5-phenylpyrimidine-type structures, and their dihedral angle between the 5-phenyl and pyrimidine rings, are 2,4-diamino-5-(3',4'-dichlorophenyl)-6-methylpyrimidinium ethanesulfonate [71.7 (1)°; Cody, 1983], 2,4-diamino-5-(3',4'-dichlorophenyl)-6-methylpyrimidine [78.2 (5) and 88.4 (5)°; De et al., 1989] and methylbenzoprim [75.4 (2) and 73.5 (2)°; Denny et al., 1992]. The latter two compounds have two unique molecules in the asymmetric unit.
Hindrance from the 5-phenyl ring to neighbouring molecules and the conformation of the thiophenyl ring not only prevent any hydrogen-bonding associations to the S atom, but the latter also causes the resultant 2-aminopyrimidine hydrogen-bonded polymer chain to be convoluted (Fig. 2), similar to the packing of both 2-amino-4-chloro-6-(4-fluorophenylthio)pyrimidine and 2-amino-4-[4-(2,3-dimethylphenyl)piperazino]-6-phenylthiopyrimidine (Lynch et al., 2002). However, the hydrogen-bonding pattern for (I) (Table 1) does differ from these two aforementioned structures in that there is a three-centre association from one 2-amino H atom to both the adjacent pyrimidine N atom and the adjacent 2-amino N atom. This is due to the high angle (ca 90°) in which the 2-aminopyrimidines approach each other to form the hydrogen-bonded chain thus allowing one 2-amino H atom closer to both N atoms and not just the pyrimidine N. Such a high angle of incidence is due to hindrance from both the thiophenyl and piperidyl substituents because in lesser-substituted 2-aminopyrimidines any resultant hydrogen-bonded chains have a high occurrence of being essentially planar. In this respect, it is surprising that the packing network of (I) displays any R22(8) dimers, let alone a full chain, especially when the Cl atom is available for hydrogen-bonding associations in an unhindered position [compare this with the structure of 2-amino-4-(4-(2-ethoxyphenyl)piperazino)-6-(4-chlorophenylthio)pyrimidine in Lynch et al. (2002)].