Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270111055260/mx3062sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270111055260/mx3062Isup2.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270111055260/mx3062IIsup3.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S0108270111055260/mx3062Isup4.cml | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S0108270111055260/mx3062IIsup5.cml |
CCDC references: 867027; 867028
For related literature, see: Aakeröy et al. (2009); Allen (2002); Blatov (2006); Braude & Nachod (1955); Bucar et al. (2007); Castillo et al. (2001); Desiraju (2003); Güven (2005); Gao et al. (2006); Lemmerer (2011); MacGillivray (2008); Tyl et al. (2008); Ugono et al. (2011); Yao et al. (2008).
To 4-hydryoxypyridine (12 mg) and terephthalic acid (15 mg) were added methanol (5 ml) and water (5 ml) in a 20 ml vial. This solution was allowed to evaporate and colourless blade-like crystals of (I) were harvested. In the same manner, 3-hydroxypyridine (27 mg) and therephthalic acid (33 mg) were dissolved in methanol (5 ml) and water (5 ml) in a 20 ml vial and the solvents allowed to evaporate. Colourless columnar crystals of (II) were harvested.
All C-bound H atoms were included in geometrically calculated positions, with C—H = 0.95 Å. The pyridone, carboxylic acid, water and hydroxy H atoms were initially located from a difference Fourier map in positions that form good hydrogen bonds to nearby acceptors. Water O—H distances were restrained to 0.84 (1) Å, carboxylic acid and hydroxy O—H distances were constrained to 0.84 Å and amine N—H distances were constrained to 0.88 Å. All O-bound H atoms were refined with Uiso(H) = 1.5Ueq(O). All other H atoms were refined with Uiso(H) = 1.2Ueq(parent atom).
For both compounds, data collection: APEX2 (Bruker, 2008); cell refinement: SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Sheldrick, 2008), POV-RAY (Cason, 2003) and DIAMOND (Brandenburg, 2009). Software used to prepare material for publication: XCIF (Sheldrick, 2008), enCIFer (Allen et al., 2004) and publCIF (Westrip, 2010) for (I); XCIF (Sheldrick, 2008), enCIFer (Allen et al., 2004), publCIF (Westrip, 2010) and TOPOS (Blatov, 2006) for (II).
2C5H5NO·C8H6O4·2H2O | F(000) = 412 |
Mr = 392.36 | Dx = 1.468 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1679 reflections |
a = 10.412 (2) Å | θ = 3.3–22.3° |
b = 11.994 (3) Å | µ = 0.12 mm−1 |
c = 7.1077 (17) Å | T = 120 K |
β = 90.743 (4)° | Blade, colourless |
V = 887.6 (4) Å3 | 0.23 × 0.05 × 0.02 mm |
Z = 2 |
Bruker APEXII Kappa X8 area-detector diffractometer | 2214 independent reflections |
Radiation source: fine-focus sealed tube | 1589 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.070 |
Detector resolution: 8.33 pixels mm-1 | θmax = 28.4°, θmin = 2.0° |
combination of ω and ϕ scans | h = −13→13 |
Absorption correction: numerical (SADABS; Sheldrick, 2008) | k = −16→15 |
Tmin = 0.907, Tmax = 1.000 | l = −9→9 |
15289 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.104 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0387P)2 + 0.353P] where P = (Fo2 + 2Fc2)/3 |
2214 reflections | (Δ/σ)max = 0.001 |
134 parameters | Δρmax = 0.26 e Å−3 |
2 restraints | Δρmin = −0.27 e Å−3 |
2C5H5NO·C8H6O4·2H2O | V = 887.6 (4) Å3 |
Mr = 392.36 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.412 (2) Å | µ = 0.12 mm−1 |
b = 11.994 (3) Å | T = 120 K |
c = 7.1077 (17) Å | 0.23 × 0.05 × 0.02 mm |
β = 90.743 (4)° |
Bruker APEXII Kappa X8 area-detector diffractometer | 2214 independent reflections |
Absorption correction: numerical (SADABS; Sheldrick, 2008) | 1589 reflections with I > 2σ(I) |
Tmin = 0.907, Tmax = 1.000 | Rint = 0.070 |
15289 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 2 restraints |
wR(F2) = 0.104 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.26 e Å−3 |
2214 reflections | Δρmin = −0.27 e Å−3 |
134 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. Hydrogen atoms bonded to carbon were placed in geometric positions with C—H bonded distances constrained to 0.95 Å. Water, hydroxyl, and carboxylic acid H atoms were included initially in their observed positions. Water H atoms were restrained to have O—H distances of 0.84 (1) Å while the carboxylic acid and amine N atoms were refined with distances constrained to 0.84 and 0.88 Å, respectively. Thermal perameters of water and carboxylic acid H atoms were constrained to be 1.5 × the Ueq of the oxygen to which they are bonded. The thermal perameters of all remaining H atoms were constrained to be 1.2 × the Ueq of the atom to which they are bonded. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.12796 (12) | 0.03948 (10) | 0.35315 (18) | 0.0213 (3) | |
O2 | 0.63524 (11) | 0.22373 (10) | 0.42134 (18) | 0.0198 (3) | |
H2 | 0.6367 | 0.1537 | 0.4250 | 0.030* | |
O3 | 0.44719 (11) | 0.19946 (10) | 0.56596 (18) | 0.0200 (3) | |
O4 | 0.67459 (12) | 0.01180 (10) | 0.41366 (19) | 0.0211 (3) | |
H4Y | 0.6180 (16) | −0.0389 (14) | 0.411 (3) | 0.032* | |
H4Z | 0.7349 (15) | −0.0067 (17) | 0.488 (2) | 0.032* | |
N1 | −0.01048 (14) | 0.35054 (12) | 0.24445 (19) | 0.0172 (3) | |
H1N | −0.0397 | 0.4179 | 0.2194 | 0.021* | |
C2 | 0.11007 (16) | 0.33728 (14) | 0.3134 (2) | 0.0174 (4) | |
H2A | 0.1621 | 0.4012 | 0.3343 | 0.021* | |
C3 | 0.15869 (16) | 0.23485 (14) | 0.3534 (2) | 0.0163 (4) | |
H3A | 0.2434 | 0.2281 | 0.4036 | 0.020* | |
C4 | 0.08341 (16) | 0.13732 (14) | 0.3207 (2) | 0.0157 (4) | |
C5 | −0.04364 (16) | 0.15581 (14) | 0.2505 (2) | 0.0176 (4) | |
H5A | −0.0991 | 0.0941 | 0.2292 | 0.021* | |
C6 | −0.08636 (16) | 0.26089 (14) | 0.2138 (2) | 0.0178 (4) | |
H6A | −0.1711 | 0.2714 | 0.1658 | 0.021* | |
C7 | 0.52848 (16) | 0.26034 (14) | 0.4995 (2) | 0.0154 (3) | |
C8 | 0.51602 (16) | 0.38450 (14) | 0.4988 (2) | 0.0151 (3) | |
C9 | 0.60678 (16) | 0.45297 (14) | 0.4148 (2) | 0.0169 (4) | |
H9A | 0.6798 | 0.4210 | 0.3569 | 0.020* | |
C10 | 0.40925 (17) | 0.43222 (14) | 0.5845 (2) | 0.0179 (4) | |
H10A | 0.3473 | 0.3858 | 0.6425 | 0.022* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0190 (6) | 0.0135 (6) | 0.0313 (7) | 0.0022 (5) | −0.0043 (5) | −0.0011 (5) |
O2 | 0.0199 (6) | 0.0115 (6) | 0.0280 (7) | 0.0018 (5) | 0.0023 (5) | 0.0001 (5) |
O3 | 0.0184 (6) | 0.0145 (6) | 0.0272 (7) | −0.0025 (5) | 0.0007 (5) | 0.0028 (5) |
O4 | 0.0196 (7) | 0.0136 (6) | 0.0298 (7) | −0.0002 (5) | −0.0071 (6) | 0.0008 (5) |
N1 | 0.0195 (7) | 0.0131 (7) | 0.0189 (7) | 0.0039 (6) | −0.0001 (6) | 0.0013 (6) |
C2 | 0.0177 (8) | 0.0163 (9) | 0.0181 (8) | −0.0030 (7) | −0.0008 (7) | −0.0011 (7) |
C3 | 0.0145 (8) | 0.0173 (9) | 0.0173 (8) | −0.0005 (7) | 0.0002 (7) | 0.0001 (7) |
C4 | 0.0163 (8) | 0.0154 (8) | 0.0155 (8) | 0.0011 (6) | 0.0024 (7) | −0.0001 (6) |
C5 | 0.0166 (8) | 0.0166 (9) | 0.0196 (9) | −0.0036 (7) | −0.0004 (7) | −0.0007 (7) |
C6 | 0.0153 (8) | 0.0201 (9) | 0.0181 (8) | 0.0004 (7) | −0.0003 (7) | 0.0009 (7) |
C7 | 0.0142 (8) | 0.0160 (8) | 0.0159 (8) | 0.0019 (7) | −0.0050 (7) | −0.0013 (7) |
C8 | 0.0159 (8) | 0.0134 (8) | 0.0159 (8) | −0.0002 (6) | −0.0026 (6) | −0.0006 (7) |
C9 | 0.0144 (8) | 0.0159 (8) | 0.0206 (9) | −0.0001 (7) | 0.0013 (7) | −0.0002 (7) |
C10 | 0.0167 (8) | 0.0170 (9) | 0.0202 (9) | −0.0033 (7) | 0.0016 (7) | 0.0012 (7) |
O1—C4 | 1.282 (2) | C9—C10i | 1.387 (2) |
O2—C7 | 1.324 (2) | C10—C9i | 1.387 (2) |
O3—C7 | 1.218 (2) | O2—H2 | 0.8400 |
N1—C6 | 1.350 (2) | O4—H4Y | 0.846 (9) |
N1—C2 | 1.351 (2) | O4—H4Z | 0.847 (9) |
C2—C3 | 1.358 (2) | N1—H1N | 0.8800 |
C3—C4 | 1.426 (2) | C2—H2A | 0.9500 |
C4—C5 | 1.425 (2) | C3—H3A | 0.9500 |
C5—C6 | 1.361 (2) | C5—H5A | 0.9500 |
C7—C8 | 1.495 (2) | C6—H6A | 0.9500 |
C8—C9 | 1.392 (2) | C9—H9A | 0.9500 |
C8—C10 | 1.397 (2) | C10—H10A | 0.9500 |
C6—N1—C2 | 120.25 (15) | C7—O2—H2 | 109.5 |
N1—C2—C3 | 121.66 (16) | H4Y—O4—H4Z | 110 (2) |
C2—C3—C4 | 120.37 (16) | C6—N1—H1N | 119.9 |
O1—C4—C5 | 122.52 (16) | C2—N1—H1N | 119.9 |
O1—C4—C3 | 121.67 (16) | N1—C2—H2A | 119.2 |
C5—C4—C3 | 115.81 (15) | C3—C2—H2A | 119.2 |
C6—C5—C4 | 120.73 (16) | C2—C3—H3A | 119.8 |
N1—C6—C5 | 121.17 (16) | C4—C3—H3A | 119.8 |
O3—C7—O2 | 123.74 (15) | C6—C5—H5A | 119.6 |
O3—C7—C8 | 122.55 (15) | C4—C5—H5A | 119.6 |
O2—C7—C8 | 113.71 (14) | N1—C6—H6A | 119.4 |
C9—C8—C10 | 119.57 (16) | C5—C6—H6A | 119.4 |
C9—C8—C7 | 121.99 (15) | C10i—C9—H9A | 119.9 |
C10—C8—C7 | 118.43 (15) | C8—C9—H9A | 119.9 |
C10i—C9—C8 | 120.11 (16) | C9i—C10—H10A | 119.8 |
C9i—C10—C8 | 120.32 (16) | C8—C10—H10A | 119.8 |
C6—N1—C2—C3 | 0.1 (2) | O3—C7—C8—C9 | −177.02 (16) |
N1—C2—C3—C4 | 1.0 (3) | O2—C7—C8—C9 | 2.8 (2) |
C2—C3—C4—O1 | 178.36 (16) | O3—C7—C8—C10 | 2.6 (2) |
C2—C3—C4—C5 | −1.8 (2) | O2—C7—C8—C10 | −177.56 (15) |
O1—C4—C5—C6 | −178.49 (16) | C10—C8—C9—C10i | −0.3 (3) |
C3—C4—C5—C6 | 1.7 (2) | C7—C8—C9—C10i | 179.28 (16) |
C2—N1—C6—C5 | −0.2 (2) | C9—C8—C10—C9i | 0.3 (3) |
C4—C5—C6—N1 | −0.7 (3) | C7—C8—C10—C9i | −179.30 (16) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O4 | 0.84 | 1.75 | 2.5753 (17) | 167 |
O4—H4Y···O3ii | 0.85 (1) | 2.05 (1) | 2.8379 (18) | 155 (2) |
O4—H4Z···O1ii | 0.85 (1) | 1.85 (1) | 2.6951 (18) | 176 (2) |
N1—H1N···O1iii | 0.88 | 1.80 | 2.6628 (19) | 168 |
Symmetry codes: (ii) −x+1, −y, −z+1; (iii) −x, y+1/2, −z+1/2. |
2C5H6NO+·C8H4O42− | F(000) = 372 |
Mr = 356.33 | Dx = 1.497 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 6172 reflections |
a = 4.9245 (4) Å | θ = 2.4–28.2° |
b = 15.7128 (14) Å | µ = 0.11 mm−1 |
c = 10.3256 (9) Å | T = 120 K |
β = 98.386 (5)° | Columnar, colourless |
V = 790.43 (12) Å3 | 0.25 × 0.23 × 0.15 mm |
Z = 2 |
Bruker APEXII Kappa X8 area-detector diffractometer | 1979 independent reflections |
Radiation source: fine-focus sealed tube | 1735 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
Detector resolution: 8.33 pixels mm-1 | θmax = 28.4°, θmin = 2.4° |
combination of ω and ϕ scans | h = −6→6 |
Absorption correction: numerical (SADABS; Sheldrick, 2008) | k = −21→20 |
Tmin = 0.927, Tmax = 1.000 | l = −13→13 |
16777 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.094 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0484P)2 + 0.3112P] where P = (Fo2 + 2Fc2)/3 |
1979 reflections | (Δ/σ)max < 0.001 |
119 parameters | Δρmax = 0.37 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
2C5H6NO+·C8H4O42− | V = 790.43 (12) Å3 |
Mr = 356.33 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 4.9245 (4) Å | µ = 0.11 mm−1 |
b = 15.7128 (14) Å | T = 120 K |
c = 10.3256 (9) Å | 0.25 × 0.23 × 0.15 mm |
β = 98.386 (5)° |
Bruker APEXII Kappa X8 area-detector diffractometer | 1979 independent reflections |
Absorption correction: numerical (SADABS; Sheldrick, 2008) | 1735 reflections with I > 2σ(I) |
Tmin = 0.927, Tmax = 1.000 | Rint = 0.024 |
16777 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.094 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.37 e Å−3 |
1979 reflections | Δρmin = −0.22 e Å−3 |
119 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. Hydrogen atoms bonded to carbon were placed in geometric positions with C—H bonded distances constrained to 0.95 Å. Amide and hydroxyl H atoms were included in their observed positions and were subsequently refined with O—H and N—H distances constrained to 0.84 and 0.88 Å, respectively. The hydroxyl hydrogen thermal parameters were tied to be 1.5 × the Ueq of the oxygen to which they are bonded, all remaining hydrogen thermal parameters were set to 1.2 × Ueq of the atom to which they are bonded. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.10205 (17) | 0.40959 (6) | 0.35614 (8) | 0.0250 (2) | |
H1O | 0.1087 | 0.3861 | 0.2836 | 0.037* | |
N1 | 0.67723 (18) | 0.28650 (6) | 0.50705 (9) | 0.0181 (2) | |
H1N | 0.7822 | 0.2446 | 0.4869 | 0.022* | |
O2 | −0.01389 (17) | 0.33229 (5) | −0.07064 (8) | 0.02153 (19) | |
C2 | 0.4745 (2) | 0.31338 (7) | 0.41693 (10) | 0.0181 (2) | |
H2A | 0.4448 | 0.2871 | 0.3332 | 0.022* | |
O3 | 0.13620 (16) | 0.32831 (5) | 0.14238 (8) | 0.02073 (19) | |
C3 | 0.3062 (2) | 0.37982 (7) | 0.44493 (10) | 0.0185 (2) | |
C4 | 0.3529 (2) | 0.41592 (7) | 0.56924 (11) | 0.0217 (2) | |
H4A | 0.2397 | 0.4610 | 0.5915 | 0.026* | |
C5 | 0.5648 (2) | 0.38580 (7) | 0.66004 (11) | 0.0221 (2) | |
H5A | 0.5981 | 0.4101 | 0.7451 | 0.027* | |
C6 | 0.7282 (2) | 0.32029 (7) | 0.62669 (11) | 0.0204 (2) | |
H6A | 0.8754 | 0.2995 | 0.6883 | 0.024* | |
C7 | 0.1356 (2) | 0.35924 (7) | 0.03023 (10) | 0.0164 (2) | |
C8 | 0.3251 (2) | 0.43209 (6) | 0.01420 (10) | 0.0155 (2) | |
C9 | 0.2775 (2) | 0.48412 (7) | −0.09551 (10) | 0.0165 (2) | |
H9A | 0.1250 | 0.4733 | −0.1610 | 0.020* | |
C10 | 0.5487 (2) | 0.44838 (7) | 0.10982 (10) | 0.0170 (2) | |
H10A | 0.5822 | 0.4131 | 0.1852 | 0.020* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0237 (4) | 0.0306 (4) | 0.0190 (4) | 0.0095 (3) | −0.0028 (3) | −0.0004 (3) |
N1 | 0.0187 (4) | 0.0176 (4) | 0.0182 (4) | 0.0028 (3) | 0.0029 (3) | 0.0001 (3) |
O2 | 0.0235 (4) | 0.0235 (4) | 0.0165 (4) | −0.0080 (3) | −0.0005 (3) | −0.0008 (3) |
C2 | 0.0193 (5) | 0.0192 (5) | 0.0157 (5) | 0.0003 (4) | 0.0021 (4) | −0.0004 (4) |
O3 | 0.0232 (4) | 0.0214 (4) | 0.0166 (4) | −0.0049 (3) | −0.0003 (3) | 0.0028 (3) |
C3 | 0.0169 (5) | 0.0206 (5) | 0.0174 (5) | 0.0013 (4) | 0.0010 (4) | 0.0021 (4) |
C4 | 0.0231 (5) | 0.0213 (5) | 0.0208 (5) | 0.0045 (4) | 0.0037 (4) | −0.0017 (4) |
C5 | 0.0242 (5) | 0.0249 (5) | 0.0167 (5) | 0.0028 (4) | 0.0012 (4) | −0.0042 (4) |
C6 | 0.0193 (5) | 0.0236 (5) | 0.0175 (5) | 0.0021 (4) | −0.0002 (4) | −0.0004 (4) |
C7 | 0.0155 (5) | 0.0164 (5) | 0.0171 (5) | 0.0006 (4) | 0.0020 (4) | −0.0007 (4) |
C8 | 0.0148 (5) | 0.0161 (5) | 0.0159 (5) | 0.0003 (3) | 0.0031 (4) | −0.0019 (4) |
C9 | 0.0143 (4) | 0.0203 (5) | 0.0142 (5) | 0.0002 (4) | 0.0000 (3) | −0.0016 (4) |
C10 | 0.0172 (5) | 0.0183 (5) | 0.0153 (5) | 0.0010 (4) | 0.0016 (4) | 0.0011 (4) |
O1—C3 | 1.3420 (13) | C8—C10 | 1.3913 (14) |
N1—C2 | 1.3304 (14) | C9—C10i | 1.3840 (14) |
N1—C6 | 1.3344 (14) | C10—C9i | 1.3841 (14) |
O2—C7 | 1.2579 (13) | O1—H1O | 0.8400 |
C2—C3 | 1.3894 (15) | N1—H1N | 0.8800 |
O3—C7 | 1.2555 (13) | C2—H2A | 0.9500 |
C3—C4 | 1.3915 (15) | C4—H4A | 0.9500 |
C4—C5 | 1.3809 (15) | C5—H5A | 0.9500 |
C5—C6 | 1.3806 (15) | C6—H6A | 0.9500 |
C7—C8 | 1.5013 (14) | C9—H9A | 0.9500 |
C8—C9 | 1.3889 (14) | C10—H10A | 0.9500 |
C2—N1—C6 | 122.82 (9) | C9i—C10—C8 | 120.19 (10) |
C3—O1—H1O | 109.5 | C2—N1—H1N | 118.6 |
N1—C2—C3 | 120.17 (10) | C6—N1—H1N | 118.6 |
O1—C3—C2 | 122.00 (10) | N1—C2—H2A | 119.9 |
O1—C3—C4 | 119.65 (10) | C3—C2—H2A | 119.9 |
C2—C3—C4 | 118.35 (10) | C5—C4—H4A | 120.2 |
C5—C4—C3 | 119.57 (10) | C3—C4—H4A | 120.2 |
C6—C5—C4 | 119.76 (10) | C6—C5—H5A | 120.1 |
N1—C6—C5 | 119.32 (10) | C4—C5—H5A | 120.1 |
O3—C7—O2 | 123.77 (10) | N1—C6—H6A | 120.3 |
O3—C7—C8 | 118.61 (9) | C5—C6—H6A | 120.3 |
O2—C7—C8 | 117.61 (9) | C10i—C9—H9A | 119.8 |
C9—C8—C10 | 119.50 (9) | C8—C9—H9A | 119.8 |
C9—C8—C7 | 120.34 (9) | C9i—C10—H10A | 119.9 |
C10—C8—C7 | 120.16 (9) | C8—C10—H10A | 119.9 |
C10i—C9—C8 | 120.31 (9) | ||
C6—N1—C2—C3 | 0.56 (16) | O3—C7—C8—C9 | −160.84 (10) |
N1—C2—C3—O1 | 179.02 (10) | O2—C7—C8—C9 | 19.69 (14) |
N1—C2—C3—C4 | −1.03 (16) | O3—C7—C8—C10 | 18.64 (14) |
O1—C3—C4—C5 | −179.32 (10) | O2—C7—C8—C10 | −160.83 (10) |
C2—C3—C4—C5 | 0.73 (17) | C10—C8—C9—C10i | 0.09 (16) |
C3—C4—C5—C6 | 0.03 (17) | C7—C8—C9—C10i | 179.58 (9) |
C2—N1—C6—C5 | 0.23 (17) | C9—C8—C10—C9i | −0.09 (16) |
C4—C5—C6—N1 | −0.52 (17) | C7—C8—C10—C9i | −179.58 (9) |
Symmetry code: (i) −x+1, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···O3 | 0.84 | 1.74 | 2.5767 (12) | 174 |
N1—H1N···O2ii | 0.88 | 1.73 | 2.6072 (12) | 173 |
N1—H1N···O3ii | 0.88 | 2.47 | 3.0651 (12) | 125 |
Symmetry code: (ii) x+1, −y+1/2, z+1/2. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | 2C5H5NO·C8H6O4·2H2O | 2C5H6NO+·C8H4O42− |
Mr | 392.36 | 356.33 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, P21/c |
Temperature (K) | 120 | 120 |
a, b, c (Å) | 10.412 (2), 11.994 (3), 7.1077 (17) | 4.9245 (4), 15.7128 (14), 10.3256 (9) |
β (°) | 90.743 (4) | 98.386 (5) |
V (Å3) | 887.6 (4) | 790.43 (12) |
Z | 2 | 2 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.12 | 0.11 |
Crystal size (mm) | 0.23 × 0.05 × 0.02 | 0.25 × 0.23 × 0.15 |
Data collection | ||
Diffractometer | Bruker APEXII Kappa X8 area-detector diffractometer | Bruker APEXII Kappa X8 area-detector diffractometer |
Absorption correction | Numerical (SADABS; Sheldrick, 2008) | Numerical (SADABS; Sheldrick, 2008) |
Tmin, Tmax | 0.907, 1.000 | 0.927, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15289, 2214, 1589 | 16777, 1979, 1735 |
Rint | 0.070 | 0.024 |
(sin θ/λ)max (Å−1) | 0.669 | 0.668 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.104, 1.04 | 0.034, 0.094, 1.02 |
No. of reflections | 2214 | 1979 |
No. of parameters | 134 | 119 |
No. of restraints | 2 | 0 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.26, −0.27 | 0.37, −0.22 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP (Sheldrick, 2008), POV-RAY (Cason, 2003) and DIAMOND (Brandenburg, 2009), XCIF (Sheldrick, 2008), enCIFer (Allen et al., 2004) and publCIF (Westrip, 2010), XCIF (Sheldrick, 2008), enCIFer (Allen et al., 2004), publCIF (Westrip, 2010) and TOPOS (Blatov, 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O4 | 0.84 | 1.75 | 2.5753 (17) | 167.2 |
O4—H4Y···O3i | 0.846 (9) | 2.050 (13) | 2.8379 (18) | 155 (2) |
O4—H4Z···O1i | 0.847 (9) | 1.850 (10) | 2.6951 (18) | 176 (2) |
N1—H1N···O1ii | 0.88 | 1.80 | 2.6628 (19) | 167.7 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x, y+1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···O3 | 0.84 | 1.74 | 2.5767 (12) | 174.1 |
N1—H1N···O2i | 0.88 | 1.73 | 2.6072 (12) | 173.3 |
N1—H1N···O3i | 0.88 | 2.47 | 3.0651 (12) | 125.2 |
Symmetry code: (i) x+1, −y+1/2, z+1/2. |
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Crystal engineering is a rapidly evolving field of chemistry that relies on intermolecular interactions such as hydrogen-bonds to form new materials (Desiraju, 2003). The cocrystallization of two dissimilar compounds has led to a wide body of work (see, for example, Bucar et al., 2007; MacGillivray, 2008; Ugono et al., 2011). Subtle differences in electronegativity and pKa can influence the packing arrangement of these cocrystallant molecules (Aakeröy et al., 2009). Terephthalic acid has been used successfully as a co-crystallant in crystal engineering studies (Lemmerer, 2011). Both 3- and 4-hydroxypyridine and derivatives thereof have been incorporated as linker and spacer molecules in metal–organic frameworks (Castillo et al., 2001; Gao et al., 2006). Here, we present the structural study of the combination of terephthalic acid with 3-hydroxypyridine and 4-hydroxypyridine.
Terephthalic acid and 4-hydroxypyridine were found to cocrystallize with a water molecule in the lattice, viz. 4-pyridone–terephthalic acid–water (2/1/2), (I) (Fig. 1). 4-Hydroxypyridine was found to rearrange to 4-pyridone, a rearrangement which has been previously reported (Tyl et al., 2008). The 4-pyridone molecule presented here displays identical derived parameters to that of Tyl's work. The terephthalic acid crystallizes on a centre of symmetry at (1/2, 1/2, 1/2).
The terephthalic acid forms hydrogen-bonded chains incorporating the water molecule that extend parallel to the b axis. The 4-pyridone also forms hydrogen-bonded chains, with hydrogen bonds from the N atom to the pyridone O atom of an adjacent pyridone molecule (Table 1 and Fig. 2a). The water H atom not involved in the carboxylic acid chain forms a hydrogen bond to the pyridone O atom, linking the two chains together. This results in two-dimensional sheets of hydrogen-bonded molecules extending through the lattice parallel to the [101] plane (Fig. 2b).
Similarly, terephthalic acid and 3-hydroxypyridine were also found to cocrystallize, as bis(3-hydroxypyridinium) terephthalate, (II) (Fig. 3). This mixture has been previously reported as a room-temperature analysis [Yao et al., 2008; Cambridge Structural Database (CSD, Version 5.32?; Allen, 2002) refcode DIWXOX]. The derived metrics reported here are similar to those found within Yao's work. As expected, upon cooling there is distortion of the unit cell, with a and c contracting [4.9245 (4) and 10.3256 (9) Å, respectively, compared with 4.978 (1) and 10.623 (1) Å in Yao's work]. However, the b axis remains the same and β distorts significantly [b = 15.7128 (14) Å and β = 98.386 (5)° in this work, compared with b = 15.705 (3) Å and β = 100.20 (1)° in Yao's work]. These distortions of the unit cell are not readily recognized by data-mining software and the values reported here expand the current body of information regarding (II). The cocrystallization of (II) was also found to occur under milder conditions than those previously reported (see Experimental for details, cf. hydrothermal techniques for Yao's synthesis). Presumably, the 3-hydroxypyridine is a strong enough Lewis base to abstract the H atom from the carboxylic acid under ambient conditions [pKa(3-hydroxypyridine) = 4.80 (Güven, 2005); pKa(terephthalic acid) = 3.51 and 4.82 (Braude & Nachod, 1955)].
Unlike (I), water is not incorporated into the lattice of (II) and it is a purely binary cocrystal. Similar to (I), the terephthalate in (II) is found to crystallize about an inversion centre at (0, 1/2, 0). Presumably due to electronic constraints, the 3-hydroxypyridine does not rearrange to form a pyridone. Instead, 3-hydroxypyridine abstracts the carboxyl H atom from terephthalic acid, forming a cation–anion pair. Unlike 4-hydoxypyridine, which can rearrange and localize its formal electronic structure to the pyridone, 3-hydroxypyridine cannot readily localize the aromatic bonds to incorporate a carbonyl group at the 3-position. Hence, it retains the 3-hydroxy substituent and forms a cation. A similar hydrogen abstraction was observed by Lemmerer (2011), wherein a series of primary amines were cocrystallized with terephthalic acid yielding similar cation–anion pairs.
One carboxylate O atom of (II) (O2) accepts a hydrogen bond from the pyridinium N atom related by the c-glide plane. Atom O3 accepts a hydrogen bond from the hydroxy O atom (O1) of the 3-hydroxypyridinium cation. This generates a two-dimensional sheet of hydrogen-bonded molecules (Fig. 4a). Formally, the framework is a 2,4-connected square net, with the pyridinium forming the edges of the square and the terephthalate the corners (analysis using TOPOS; Blatov, 2006). The sheets lie in a plane parallel to the [201] crystallographic plane. The topology viewed along the [201] plane is depicted in Fig. 4(b).
In the previous characterization (Yao et al., 2008), the dihedral angle formed by the pyridinium and benzene rings was reported to be 2.2°. Yao et al. appear to have overlooked the extended packing of (II) in their report. The compounds form a two-dimensional network (described above), yielding additional information about the intermolecular geometry. For example, the interplanar angle formed by the terephthalate and the pyridinium moiety is dependent upon the choice of location of the pyridinium and terephthalate within the lattice. We found that the plane of one pyridinium cation within the network forms one angle perpendicular to the plane of the benzene ring of the terephthalate [angle formed by the planes of the pyrinidium and benzene rings = 78.79 (7)°] and one that is closer to coplanar with the benzene ring [interplanar angle = 9.61 (16)°]. This choice depends on which hydrogen-bonding group (amide or hydroxy) is selected as the orienting group.