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The six-membered cyclic phosphate diester, 5,5-dimethoxy-2-hydroxy-1,3,2-dioxaphosphorinan-2-one, C5H11O6P or (MeO)2cDHAP, which is the dimethyl acetal of cyclic dihydroxyacetone phosphate (cDHAP), has been obtained in the form of two new cyclohexylammonium (cha) salts, cyclohexylammonium 5,5-dimethoxy-2-oxo-1,3,2-dioxaphosphorinan-2-olate monohydrate, (cha)[(MeO)2cDHAP]·H2O or C6H14N+·C5H10O6P-·H2O, and cyclohexylammonium 5,5-dimethoxy-2-oxo-1,3,2-dioxaphosphorinan-2-olate, (cha)[(MeO)2cDHAP] or C6H14N+·C5H10O6P-, as well as in the form of the anhydrous free acid, (MeO)2cDHAP. It is shown that protonation of the cyclic phosphate group influences the chair conformation of the P/O/C/C/C/O 1,3,2-dioxaphosphorinane ring, and that differences in the ring conformation correlate with different deformations observed in the ionized and protonated phosphate groups. The ring is more evenly puckered in the anions, in contrast with the flattening observed in the structure of the free acid.
Supporting information
CCDC references: 829706; 829707; 829708
The cyclohexylammonium salt of (MeO)2cDHAP was obtained by isolation of an
intermediate in the basic hydrolysis of the cyclic triester derivative, using
a method described previously (Ślepokura, 2008). Excess
cyclohexylamine was
removed by washing the crude product with diethyl ether. Concentration of the
resulting mixture under vacuum and then under a nitrogen stream at room
temperature gave two kinds of crystals: small plates of (5j) and
needles of the monohydrated monoclinic form described previously, (5b).
Recrystallization of (5b) from water at room temperature resulted in
large plates of its triclinic form, (5i).
Crystals of (MeO)2cDHAP, (5k), were grown from an acidic solution
prepared as follows. The cyclohexylammonium salt of (MeO)2cDHAP (250 mg
dissolved in a minimal quantity of water) was passed through an ion-exchange
column (Dowex 50-H+). The acidic solution was stirred at 313 K for 3.5 h.
Subsequent evaporation of the solvent under a nitrogen stream yielded large
blocks of (5k).
All H atoms were found in difference Fourier maps. In the final refinement
cycles, water H atoms in (5i) were refined with Uiso(H) =
1.5Ueq(O). All remaining H atoms were treated as riding atoms, with
C—H = 0.98–1.00 Å, N—H = 0.91 Å and O—H = 0.84 Å, and with
Uiso(H) = 1.2Ueq(C) for CH or CH2, or
1.5Ueq(C,N,O) for CH3, NH3 or OH.
For all compounds, data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell refinement: CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Bruker, 1998); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
(5i) cyclohexylammonium 5,5-dimethoxy-2-oxo-1,3,2-dioxaphosphinane-2-olate
monohydrate
top
Crystal data top
C6H14N+·C5H10O6P−·H2O | Z = 2 |
Mr = 315.30 | F(000) = 340 |
Triclinic, P1 | Dx = 1.307 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.064 (2) Å | Cell parameters from 8262 reflections |
b = 8.475 (4) Å | θ = 2.9–36.9° |
c = 13.966 (6) Å | µ = 0.20 mm−1 |
α = 102.48 (3)° | T = 100 K |
β = 92.58 (3)° | Plate, colourless |
γ = 99.96 (3)° | 0.37 × 0.23 × 0.04 mm |
V = 801.1 (6) Å3 | |
Data collection top
Kuma KM4CCD κ-geometry diffractometer with a Sapphire CCD camera | 4519 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 3579 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
ω scans | θmax = 30.0°, θmin = 2.9° |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | h = −9→8 |
Tmin = 0.913, Tmax = 1.000 | k = −11→11 |
13552 measured reflections | l = −19→19 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.094 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0606P)2] where P = (Fo2 + 2Fc2)/3 |
4519 reflections | (Δ/σ)max = 0.001 |
190 parameters | Δρmax = 0.49 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
Crystal data top
C6H14N+·C5H10O6P−·H2O | γ = 99.96 (3)° |
Mr = 315.30 | V = 801.1 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.064 (2) Å | Mo Kα radiation |
b = 8.475 (4) Å | µ = 0.20 mm−1 |
c = 13.966 (6) Å | T = 100 K |
α = 102.48 (3)° | 0.37 × 0.23 × 0.04 mm |
β = 92.58 (3)° | |
Data collection top
Kuma KM4CCD κ-geometry diffractometer with a Sapphire CCD camera | 4519 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | 3579 reflections with I > 2σ(I) |
Tmin = 0.913, Tmax = 1.000 | Rint = 0.025 |
13552 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.094 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.49 e Å−3 |
4519 reflections | Δρmin = −0.18 e Å−3 |
190 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R-factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
P1 | 0.31711 (4) | 0.28342 (3) | 0.66395 (2) | 0.01842 (8) | |
O1 | 0.26362 (10) | 0.33074 (9) | 0.77583 (5) | 0.01893 (16) | |
O21 | 0.71792 (11) | 0.38258 (10) | 0.91694 (6) | 0.02296 (17) | |
O22 | 0.48544 (11) | 0.14207 (9) | 0.86906 (6) | 0.02146 (17) | |
O3 | 0.47730 (11) | 0.17337 (9) | 0.67189 (6) | 0.02163 (17) | |
O4 | 0.40440 (11) | 0.43564 (9) | 0.63354 (6) | 0.02284 (17) | |
O5 | 0.14713 (12) | 0.17229 (10) | 0.60536 (6) | 0.02596 (18) | |
C1 | 0.42506 (14) | 0.40898 (13) | 0.84599 (8) | 0.0189 (2) | |
H1A | 0.3798 | 0.4392 | 0.9124 | 0.023* | |
H1B | 0.4901 | 0.5109 | 0.8286 | 0.023* | |
C2 | 0.56685 (14) | 0.29200 (12) | 0.84642 (8) | 0.0178 (2) | |
C3 | 0.63690 (15) | 0.24372 (14) | 0.74398 (8) | 0.0217 (2) | |
H3A | 0.7118 | 0.3423 | 0.7268 | 0.026* | |
H3B | 0.7230 | 0.1632 | 0.7442 | 0.026* | |
C4 | 0.87607 (16) | 0.29994 (16) | 0.92631 (9) | 0.0291 (3) | |
H4A | 0.8263 | 0.1847 | 0.9266 | 0.044* | |
H4B | 0.9550 | 0.3536 | 0.9880 | 0.044* | |
H4C | 0.9551 | 0.3050 | 0.8708 | 0.044* | |
C5 | 0.38159 (17) | 0.15534 (15) | 0.95452 (9) | 0.0275 (2) | |
H5A | 0.4607 | 0.2337 | 1.0098 | 0.041* | |
H5B | 0.3505 | 0.0474 | 0.9707 | 0.041* | |
H5C | 0.2620 | 0.1941 | 0.9420 | 0.041* | |
N1 | −0.10007 (13) | 0.17323 (11) | 0.44695 (7) | 0.02130 (19) | |
H1N | −0.0066 | 0.1884 | 0.4968 | 0.032* | |
H2N | −0.1497 | 0.0640 | 0.4257 | 0.032* | |
H3N | −0.1956 | 0.2278 | 0.4689 | 0.032* | |
C11 | −0.01544 (15) | 0.23810 (13) | 0.36398 (8) | 0.0201 (2) | |
H11 | 0.0384 | 0.3581 | 0.3883 | 0.024* | |
C12 | 0.14708 (16) | 0.15079 (15) | 0.32848 (9) | 0.0254 (2) | |
H12A | 0.0973 | 0.0310 | 0.3071 | 0.030* | |
H12B | 0.2484 | 0.1693 | 0.3831 | 0.030* | |
C13 | 0.23337 (17) | 0.21488 (16) | 0.24288 (10) | 0.0299 (3) | |
H13A | 0.2968 | 0.3316 | 0.2666 | 0.036* | |
H13B | 0.3330 | 0.1514 | 0.2176 | 0.036* | |
C14 | 0.08025 (18) | 0.20070 (17) | 0.15982 (9) | 0.0311 (3) | |
H14A | 0.0302 | 0.0830 | 0.1296 | 0.037* | |
H14B | 0.1391 | 0.2526 | 0.1085 | 0.037* | |
C15 | −0.08662 (18) | 0.28347 (16) | 0.19673 (9) | 0.0294 (3) | |
H15A | −0.0399 | 0.4036 | 0.2189 | 0.035* | |
H15B | −0.1881 | 0.2642 | 0.1421 | 0.035* | |
C16 | −0.17213 (16) | 0.21707 (14) | 0.28154 (8) | 0.0224 (2) | |
H16A | −0.2749 | 0.2770 | 0.3065 | 0.027* | |
H16B | −0.2303 | 0.0991 | 0.2581 | 0.027* | |
O1W | 0.70098 (13) | 0.41696 (11) | 0.51321 (7) | 0.02652 (19) | |
H1W | 0.608 (2) | 0.419 (2) | 0.5482 (13) | 0.040* | |
H2W | 0.674 (2) | 0.460 (2) | 0.4674 (13) | 0.040* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
P1 | 0.02331 (14) | 0.01617 (14) | 0.01635 (14) | 0.00346 (10) | 0.00116 (10) | 0.00522 (9) |
O1 | 0.0186 (3) | 0.0210 (4) | 0.0179 (4) | 0.0041 (3) | 0.0022 (3) | 0.0057 (3) |
O21 | 0.0208 (4) | 0.0236 (4) | 0.0225 (4) | 0.0017 (3) | −0.0031 (3) | 0.0039 (3) |
O22 | 0.0250 (4) | 0.0182 (4) | 0.0220 (4) | 0.0031 (3) | 0.0028 (3) | 0.0070 (3) |
O3 | 0.0283 (4) | 0.0197 (4) | 0.0170 (4) | 0.0085 (3) | 0.0001 (3) | 0.0018 (3) |
O4 | 0.0294 (4) | 0.0194 (4) | 0.0220 (4) | 0.0046 (3) | 0.0058 (3) | 0.0089 (3) |
O5 | 0.0304 (4) | 0.0223 (4) | 0.0234 (4) | 0.0005 (3) | −0.0064 (3) | 0.0066 (3) |
C1 | 0.0215 (5) | 0.0184 (5) | 0.0166 (5) | 0.0043 (4) | 0.0020 (4) | 0.0027 (4) |
C2 | 0.0187 (4) | 0.0174 (5) | 0.0171 (5) | 0.0027 (4) | 0.0007 (4) | 0.0041 (4) |
C3 | 0.0223 (5) | 0.0246 (5) | 0.0200 (5) | 0.0089 (4) | 0.0036 (4) | 0.0053 (4) |
C4 | 0.0215 (5) | 0.0382 (7) | 0.0294 (6) | 0.0063 (5) | −0.0018 (5) | 0.0117 (5) |
C5 | 0.0295 (6) | 0.0298 (6) | 0.0259 (6) | 0.0036 (5) | 0.0060 (5) | 0.0132 (5) |
N1 | 0.0241 (4) | 0.0205 (4) | 0.0200 (4) | 0.0058 (3) | −0.0006 (4) | 0.0053 (3) |
C11 | 0.0221 (5) | 0.0174 (5) | 0.0205 (5) | 0.0030 (4) | 0.0000 (4) | 0.0048 (4) |
C12 | 0.0230 (5) | 0.0268 (6) | 0.0289 (6) | 0.0081 (4) | 0.0020 (4) | 0.0090 (5) |
C13 | 0.0254 (6) | 0.0312 (6) | 0.0346 (7) | 0.0049 (5) | 0.0076 (5) | 0.0102 (5) |
C14 | 0.0334 (6) | 0.0374 (7) | 0.0255 (6) | 0.0104 (5) | 0.0080 (5) | 0.0095 (5) |
C15 | 0.0352 (6) | 0.0343 (6) | 0.0236 (6) | 0.0131 (5) | 0.0041 (5) | 0.0114 (5) |
C16 | 0.0235 (5) | 0.0238 (5) | 0.0205 (5) | 0.0069 (4) | 0.0005 (4) | 0.0048 (4) |
O1W | 0.0280 (4) | 0.0311 (5) | 0.0267 (4) | 0.0128 (3) | 0.0079 (4) | 0.0134 (4) |
Geometric parameters (Å, º) top
P1—O5 | 1.4784 (11) | N1—H1N | 0.91 |
P1—O4 | 1.4866 (10) | N1—H2N | 0.91 |
P1—O3 | 1.6004 (10) | N1—H3N | 0.91 |
P1—O1 | 1.6061 (10) | C11—C12 | 1.5158 (16) |
O1—C1 | 1.4343 (14) | C11—C16 | 1.5201 (16) |
O21—C2 | 1.4118 (13) | C11—H11 | 1.00 |
O21—C4 | 1.4328 (15) | C12—C13 | 1.5255 (18) |
O22—C2 | 1.4080 (13) | C12—H12A | 0.99 |
O22—C5 | 1.4229 (15) | C12—H12B | 0.99 |
O3—C3 | 1.4304 (14) | C13—C14 | 1.5205 (18) |
C1—C2 | 1.5270 (15) | C13—H13A | 0.99 |
C1—H1A | 0.99 | C13—H13B | 0.99 |
C1—H1B | 0.99 | C14—C15 | 1.5270 (18) |
C2—C3 | 1.5297 (16) | C14—H14A | 0.99 |
C3—H3A | 0.99 | C14—H14B | 0.99 |
C3—H3B | 0.99 | C15—C16 | 1.5230 (17) |
C4—H4A | 0.98 | C15—H15A | 0.99 |
C4—H4B | 0.98 | C15—H15B | 0.99 |
C4—H4C | 0.98 | C16—H16A | 0.99 |
C5—H5A | 0.98 | C16—H16B | 0.99 |
C5—H5B | 0.98 | O1W—H1W | 0.83 (2) |
C5—H5C | 0.98 | O1W—H2W | 0.83 (2) |
N1—C11 | 1.4921 (15) | | |
| | | |
O5—P1—O4 | 119.97 (5) | H1N—N1—H2N | 109.5 |
O5—P1—O3 | 106.58 (6) | C11—N1—H3N | 109.5 |
O4—P1—O3 | 109.74 (5) | H1N—N1—H3N | 109.5 |
O5—P1—O1 | 107.69 (5) | H2N—N1—H3N | 109.5 |
O4—P1—O1 | 109.24 (5) | N1—C11—C12 | 109.86 (9) |
O3—P1—O1 | 102.13 (5) | N1—C11—C16 | 109.67 (9) |
C1—O1—P1 | 114.57 (7) | C12—C11—C16 | 111.46 (10) |
C2—O21—C4 | 114.41 (9) | N1—C11—H11 | 108.6 |
C2—O22—C5 | 115.66 (9) | C12—C11—H11 | 108.6 |
C3—O3—P1 | 116.69 (7) | C16—C11—H11 | 108.6 |
O1—C1—C2 | 109.64 (9) | C11—C12—C13 | 110.32 (10) |
O1—C1—H1A | 109.7 | C11—C12—H12A | 109.6 |
C2—C1—H1A | 109.7 | C13—C12—H12A | 109.6 |
O1—C1—H1B | 109.7 | C11—C12—H12B | 109.6 |
C2—C1—H1B | 109.7 | C13—C12—H12B | 109.6 |
H1A—C1—H1B | 108.2 | H12A—C12—H12B | 108.1 |
O22—C2—O21 | 111.81 (9) | C14—C13—C12 | 111.64 (10) |
O22—C2—C1 | 113.65 (9) | C14—C13—H13A | 109.3 |
O21—C2—C1 | 104.21 (9) | C12—C13—H13A | 109.3 |
O22—C2—C3 | 105.01 (9) | C14—C13—H13B | 109.3 |
O21—C2—C3 | 112.14 (9) | C12—C13—H13B | 109.3 |
C1—C2—C3 | 110.21 (9) | H13A—C13—H13B | 108.0 |
O3—C3—C2 | 110.72 (9) | C13—C14—C15 | 111.53 (11) |
O3—C3—H3A | 109.5 | C13—C14—H14A | 109.3 |
C2—C3—H3A | 109.5 | C15—C14—H14A | 109.3 |
O3—C3—H3B | 109.5 | C13—C14—H14B | 109.3 |
C2—C3—H3B | 109.5 | C15—C14—H14B | 109.3 |
H3A—C3—H3B | 108.1 | H14A—C14—H14B | 108.0 |
O21—C4—H4A | 109.5 | C16—C15—C14 | 111.35 (10) |
O21—C4—H4B | 109.5 | C16—C15—H15A | 109.4 |
H4A—C4—H4B | 109.5 | C14—C15—H15A | 109.4 |
O21—C4—H4C | 109.5 | C16—C15—H15B | 109.4 |
H4A—C4—H4C | 109.5 | C14—C15—H15B | 109.4 |
H4B—C4—H4C | 109.5 | H15A—C15—H15B | 108.0 |
O22—C5—H5A | 109.5 | C11—C16—C15 | 109.89 (10) |
O22—C5—H5B | 109.5 | C11—C16—H16A | 109.7 |
H5A—C5—H5B | 109.5 | C15—C16—H16A | 109.7 |
O22—C5—H5C | 109.5 | C11—C16—H16B | 109.7 |
H5A—C5—H5C | 109.5 | C15—C16—H16B | 109.7 |
H5B—C5—H5C | 109.5 | H16A—C16—H16B | 108.2 |
C11—N1—H1N | 109.5 | H1W—O1W—H2W | 106.0 (15) |
C11—N1—H2N | 109.5 | | |
| | | |
O5—P1—O1—C1 | 167.33 (7) | O1—C1—C2—O21 | 179.58 (7) |
O4—P1—O1—C1 | −60.85 (8) | O1—C1—C2—C3 | 59.08 (11) |
O3—P1—O1—C1 | 55.31 (8) | P1—O3—C3—C2 | 56.68 (10) |
O5—P1—O3—C3 | −165.65 (7) | O22—C2—C3—O3 | 66.71 (11) |
O4—P1—O3—C3 | 63.00 (9) | O21—C2—C3—O3 | −171.66 (8) |
O1—P1—O3—C3 | −52.80 (8) | C1—C2—C3—O3 | −56.06 (11) |
P1—O1—C1—C2 | −62.20 (9) | N1—C11—C12—C13 | 179.41 (9) |
C5—O22—C2—O21 | 67.92 (11) | C16—C11—C12—C13 | 57.64 (13) |
C5—O22—C2—C1 | −49.72 (12) | C11—C12—C13—C14 | −55.09 (14) |
C5—O22—C2—C3 | −170.24 (9) | C12—C13—C14—C15 | 53.82 (15) |
C4—O21—C2—O22 | 60.27 (12) | C13—C14—C15—C16 | −54.52 (14) |
C4—O21—C2—C1 | −176.57 (8) | N1—C11—C16—C15 | 179.87 (9) |
C4—O21—C2—C3 | −57.38 (12) | C12—C11—C16—C15 | −58.26 (13) |
O1—C1—C2—O22 | −58.46 (11) | C14—C15—C16—C11 | 56.21 (14) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O5 | 0.91 | 1.87 | 2.758 (2) | 166 |
N1—H2N···O5i | 0.91 | 1.96 | 2.817 (2) | 157 |
N1—H3N···O1Wii | 0.91 | 1.87 | 2.719 (2) | 154 |
O1W—H1W···O4 | 0.83 (2) | 1.92 (2) | 2.749 (2) | 176 (2) |
O1W—H2W···O4iii | 0.83 (2) | 1.93 (2) | 2.758 (2) | 176 (2) |
C4—H4C···O1iv | 0.98 | 2.60 | 3.534 (2) | 159 |
C11—H11···O1Wiii | 1.00 | 2.52 | 3.416 (2) | 149 |
Symmetry codes: (i) −x, −y, −z+1; (ii) x−1, y, z; (iii) −x+1, −y+1, −z+1; (iv) x+1, y, z. |
(5j) cyclohexylammonium 5,5-dimethoxy-2-oxo-1,3,2-dioxaphosphinane-2-olate
top
Crystal data top
C6H14N+·C5H10O6P− | F(000) = 640 |
Mr = 297.28 | Dx = 1.336 Mg m−3 |
Orthorhombic, P212121 | Cu Kα radiation, λ = 1.54180 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 5357 reflections |
a = 6.678 (2) Å | θ = 3.5–76.4° |
b = 8.877 (2) Å | µ = 1.86 mm−1 |
c = 24.930 (6) Å | T = 120 K |
V = 1477.9 (7) Å3 | Plate, colourless |
Z = 4 | 0.13 × 0.08 × 0.01 mm |
Data collection top
Oxford Diffraction Xcalibur PX κ-geometry diffractometer
with an Onyx CCD camera | 2803 independent reflections |
Radiation source: Enhance (Cu) X-ray Source | 1876 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.062 |
ω and ϕ scans | θmax = 76.2°, θmin = 3.6° |
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2009) | h = −7→4 |
Tmin = 0.832, Tmax = 0.978 | k = −10→9 |
11210 measured reflections | l = −27→30 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | H-atom parameters constrained |
wR(F2) = 0.060 | w = 1/[σ2(Fo2) + (0.012P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max < 0.001 |
2803 reflections | Δρmax = 0.21 e Å−3 |
175 parameters | Δρmin = −0.21 e Å−3 |
0 restraints | Absolute structure: Flack (1983), with how many Friedel pairs? |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.03 (3) |
Crystal data top
C6H14N+·C5H10O6P− | V = 1477.9 (7) Å3 |
Mr = 297.28 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 6.678 (2) Å | µ = 1.86 mm−1 |
b = 8.877 (2) Å | T = 120 K |
c = 24.930 (6) Å | 0.13 × 0.08 × 0.01 mm |
Data collection top
Oxford Diffraction Xcalibur PX κ-geometry diffractometer
with an Onyx CCD camera | 2803 independent reflections |
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2009) | 1876 reflections with I > 2σ(I) |
Tmin = 0.832, Tmax = 0.978 | Rint = 0.062 |
11210 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.037 | H-atom parameters constrained |
wR(F2) = 0.060 | Δρmax = 0.21 e Å−3 |
S = 1.02 | Δρmin = −0.21 e Å−3 |
2803 reflections | Absolute structure: Flack (1983), with how many Friedel pairs? |
175 parameters | Absolute structure parameter: −0.03 (3) |
0 restraints | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R-factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
P1 | 0.42727 (10) | 0.14314 (8) | 0.39119 (3) | 0.03661 (17) | |
O1 | 0.5282 (2) | 0.00090 (19) | 0.36315 (7) | 0.0389 (5) | |
O21 | 0.9026 (3) | 0.1971 (2) | 0.28006 (8) | 0.0582 (6) | |
O22 | 0.5991 (3) | 0.0871 (2) | 0.25368 (8) | 0.0491 (5) | |
O3 | 0.4266 (3) | 0.26355 (19) | 0.34337 (7) | 0.0423 (5) | |
O4 | 0.5587 (2) | 0.19807 (18) | 0.43506 (7) | 0.0395 (5) | |
O5 | 0.2177 (2) | 0.1067 (2) | 0.40475 (8) | 0.0434 (5) | |
C1 | 0.7213 (4) | 0.0277 (4) | 0.33878 (12) | 0.0443 (8) | |
H1A | 0.7701 | −0.0666 | 0.3221 | 0.053* | |
H1B | 0.8183 | 0.0577 | 0.3669 | 0.053* | |
C2 | 0.7101 (4) | 0.1497 (4) | 0.29668 (12) | 0.0436 (7) | |
C3 | 0.6159 (4) | 0.2918 (3) | 0.31896 (12) | 0.0453 (8) | |
H3A | 0.7072 | 0.3368 | 0.3458 | 0.054* | |
H3B | 0.5984 | 0.3656 | 0.2895 | 0.054* | |
C4 | 1.0310 (5) | 0.0786 (4) | 0.26128 (16) | 0.0854 (13) | |
H4A | 1.0823 | 0.0215 | 0.2920 | 0.128* | |
H4B | 1.1433 | 0.1222 | 0.2413 | 0.128* | |
H4C | 0.9549 | 0.0112 | 0.2377 | 0.128* | |
C5 | 0.5618 (5) | 0.1872 (4) | 0.20980 (12) | 0.0677 (10) | |
H5A | 0.4483 | 0.2528 | 0.2185 | 0.102* | |
H5B | 0.5305 | 0.1284 | 0.1776 | 0.102* | |
H5C | 0.6810 | 0.2489 | 0.2032 | 0.102* | |
N1 | −0.0464 (3) | 0.2891 (2) | 0.45634 (8) | 0.0373 (6) | |
H1N | 0.0476 | 0.2265 | 0.4421 | 0.056* | |
H2N | −0.1707 | 0.2523 | 0.4491 | 0.056* | |
H3N | −0.0290 | 0.2952 | 0.4925 | 0.056* | |
C11 | −0.0251 (3) | 0.4432 (3) | 0.43204 (11) | 0.0375 (7) | |
H11 | −0.0191 | 0.4319 | 0.3922 | 0.045* | |
C12 | 0.1692 (4) | 0.5161 (3) | 0.45073 (12) | 0.0446 (8) | |
H12A | 0.1689 | 0.5252 | 0.4903 | 0.054* | |
H12B | 0.2844 | 0.4525 | 0.4402 | 0.054* | |
C13 | 0.1893 (4) | 0.6714 (3) | 0.42545 (13) | 0.0556 (9) | |
H13A | 0.3134 | 0.7200 | 0.4386 | 0.067* | |
H13B | 0.2002 | 0.6608 | 0.3860 | 0.067* | |
C14 | 0.0112 (4) | 0.7704 (3) | 0.43882 (14) | 0.0564 (9) | |
H14A | 0.0253 | 0.8688 | 0.4205 | 0.068* | |
H14B | 0.0070 | 0.7890 | 0.4780 | 0.068* | |
C15 | −0.1834 (4) | 0.6941 (3) | 0.42093 (12) | 0.0520 (9) | |
H15A | −0.2989 | 0.7573 | 0.4316 | 0.062* | |
H15B | −0.1844 | 0.6850 | 0.3814 | 0.062* | |
C16 | −0.2043 (4) | 0.5397 (3) | 0.44568 (12) | 0.0415 (8) | |
H16A | −0.3277 | 0.4909 | 0.4321 | 0.050* | |
H16B | −0.2160 | 0.5493 | 0.4851 | 0.050* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
P1 | 0.0279 (4) | 0.0353 (4) | 0.0466 (4) | −0.0009 (3) | 0.0027 (4) | −0.0012 (4) |
O1 | 0.0306 (10) | 0.0353 (10) | 0.0510 (12) | −0.0012 (9) | 0.0049 (9) | −0.0003 (9) |
O21 | 0.0333 (11) | 0.0741 (16) | 0.0670 (15) | −0.0049 (11) | 0.0104 (11) | 0.0037 (12) |
O22 | 0.0445 (11) | 0.0573 (14) | 0.0455 (13) | −0.0017 (11) | −0.0038 (10) | −0.0023 (10) |
O3 | 0.0337 (11) | 0.0397 (12) | 0.0536 (13) | 0.0036 (10) | 0.0055 (10) | 0.0057 (9) |
O4 | 0.0282 (10) | 0.0442 (11) | 0.0461 (11) | −0.0005 (10) | 0.0043 (10) | −0.0025 (9) |
O5 | 0.0232 (11) | 0.0499 (13) | 0.0571 (14) | −0.0063 (8) | 0.0060 (9) | −0.0037 (10) |
C1 | 0.0330 (18) | 0.051 (2) | 0.049 (2) | 0.0075 (14) | 0.0047 (14) | −0.0031 (15) |
C2 | 0.0328 (17) | 0.053 (2) | 0.0445 (19) | −0.0048 (16) | 0.0050 (14) | −0.0006 (17) |
C3 | 0.047 (2) | 0.0434 (18) | 0.0458 (18) | −0.0053 (15) | −0.0004 (15) | 0.0054 (15) |
C4 | 0.047 (2) | 0.110 (3) | 0.100 (3) | 0.014 (2) | 0.033 (2) | −0.002 (2) |
C5 | 0.068 (2) | 0.088 (3) | 0.0474 (19) | −0.008 (2) | −0.010 (2) | 0.0130 (18) |
N1 | 0.0227 (12) | 0.0419 (13) | 0.0474 (14) | 0.0011 (11) | 0.0004 (11) | −0.0027 (11) |
C11 | 0.0236 (16) | 0.0429 (18) | 0.0459 (18) | −0.0046 (13) | 0.0014 (13) | 0.0022 (14) |
C12 | 0.0269 (15) | 0.048 (2) | 0.059 (2) | −0.0053 (15) | 0.0025 (15) | 0.0003 (16) |
C13 | 0.0323 (18) | 0.064 (2) | 0.070 (2) | −0.0168 (17) | 0.0000 (16) | 0.0104 (19) |
C14 | 0.0440 (19) | 0.0425 (19) | 0.083 (2) | −0.0116 (15) | −0.0130 (17) | 0.0146 (17) |
C15 | 0.0382 (18) | 0.0432 (19) | 0.074 (3) | −0.0035 (16) | −0.0101 (17) | 0.0094 (17) |
C16 | 0.0259 (16) | 0.0391 (18) | 0.060 (2) | −0.0027 (14) | −0.0004 (15) | −0.0011 (16) |
Geometric parameters (Å, º) top
P1—O5 | 1.4753 (18) | N1—C11 | 1.503 (3) |
P1—O4 | 1.4846 (18) | N1—H1N | 0.9100 |
P1—O1 | 1.5929 (18) | N1—H2N | 0.9100 |
P1—O3 | 1.6013 (18) | N1—H3N | 0.9100 |
O1—C1 | 1.445 (3) | C11—C16 | 1.510 (3) |
O21—C2 | 1.415 (3) | C11—C12 | 1.523 (3) |
O21—C4 | 1.436 (4) | C11—H11 | 1.0000 |
O22—C2 | 1.417 (3) | C12—C13 | 1.522 (4) |
O22—C5 | 1.431 (3) | C12—H12A | 0.9900 |
O3—C3 | 1.425 (3) | C12—H12B | 0.9900 |
C1—C2 | 1.510 (4) | C13—C14 | 1.516 (4) |
C1—H1A | 0.9900 | C13—H13A | 0.9900 |
C1—H1B | 0.9900 | C13—H13B | 0.9900 |
C2—C3 | 1.515 (4) | C14—C15 | 1.532 (4) |
C3—H3A | 0.9900 | C14—H14A | 0.9900 |
C3—H3B | 0.9900 | C14—H14B | 0.9900 |
C4—H4A | 0.9800 | C15—C16 | 1.510 (3) |
C4—H4B | 0.9800 | C15—H15A | 0.9900 |
C4—H4C | 0.9800 | C15—H15B | 0.9900 |
C5—H5A | 0.9800 | C16—H16A | 0.9900 |
C5—H5B | 0.9800 | C16—H16B | 0.9900 |
C5—H5C | 0.9800 | | |
| | | |
O5—P1—O4 | 117.64 (11) | C11—N1—H2N | 109.5 |
O5—P1—O1 | 109.15 (10) | H1N—N1—H2N | 109.5 |
O4—P1—O1 | 109.49 (9) | C11—N1—H3N | 109.5 |
O5—P1—O3 | 108.30 (11) | H1N—N1—H3N | 109.5 |
O4—P1—O3 | 109.33 (10) | H2N—N1—H3N | 109.5 |
O1—P1—O3 | 101.74 (10) | N1—C11—C16 | 110.5 (2) |
C1—O1—P1 | 115.56 (17) | N1—C11—C12 | 110.1 (2) |
C2—O21—C4 | 114.8 (3) | C16—C11—C12 | 111.4 (2) |
C2—O22—C5 | 115.2 (2) | N1—C11—H11 | 108.2 |
C3—O3—P1 | 115.64 (17) | C16—C11—H11 | 108.2 |
O1—C1—C2 | 111.5 (2) | C12—C11—H11 | 108.2 |
O1—C1—H1A | 109.3 | C13—C12—C11 | 109.5 (2) |
C2—C1—H1A | 109.3 | C13—C12—H12A | 109.8 |
O1—C1—H1B | 109.3 | C11—C12—H12A | 109.8 |
C2—C1—H1B | 109.3 | C13—C12—H12B | 109.8 |
H1A—C1—H1B | 108.0 | C11—C12—H12B | 109.8 |
O21—C2—O22 | 111.8 (2) | H12A—C12—H12B | 108.2 |
O21—C2—C1 | 111.8 (2) | C14—C13—C12 | 111.4 (2) |
O22—C2—C1 | 105.7 (3) | C14—C13—H13A | 109.3 |
O21—C2—C3 | 103.7 (2) | C12—C13—H13A | 109.3 |
O22—C2—C3 | 112.7 (2) | C14—C13—H13B | 109.3 |
C1—C2—C3 | 111.3 (2) | C12—C13—H13B | 109.3 |
O3—C3—C2 | 112.2 (2) | H13A—C13—H13B | 108.0 |
O3—C3—H3A | 109.2 | C13—C14—C15 | 110.2 (2) |
C2—C3—H3A | 109.2 | C13—C14—H14A | 109.6 |
O3—C3—H3B | 109.2 | C15—C14—H14A | 109.6 |
C2—C3—H3B | 109.2 | C13—C14—H14B | 109.6 |
H3A—C3—H3B | 107.9 | C15—C14—H14B | 109.6 |
O21—C4—H4A | 109.5 | H14A—C14—H14B | 108.1 |
O21—C4—H4B | 109.5 | C16—C15—C14 | 111.2 (2) |
H4A—C4—H4B | 109.5 | C16—C15—H15A | 109.4 |
O21—C4—H4C | 109.5 | C14—C15—H15A | 109.4 |
H4A—C4—H4C | 109.5 | C16—C15—H15B | 109.4 |
H4B—C4—H4C | 109.5 | C14—C15—H15B | 109.4 |
O22—C5—H5A | 109.5 | H15A—C15—H15B | 108.0 |
O22—C5—H5B | 109.5 | C15—C16—C11 | 110.5 (2) |
H5A—C5—H5B | 109.5 | C15—C16—H16A | 109.6 |
O22—C5—H5C | 109.5 | C11—C16—H16A | 109.6 |
H5A—C5—H5C | 109.5 | C15—C16—H16B | 109.6 |
H5B—C5—H5C | 109.5 | C11—C16—H16B | 109.6 |
C11—N1—H1N | 109.5 | H16A—C16—H16B | 108.1 |
| | | |
O5—P1—O1—C1 | 169.19 (17) | O1—C1—C2—O22 | −69.6 (3) |
O4—P1—O1—C1 | −60.73 (19) | O1—C1—C2—C3 | 53.1 (3) |
O3—P1—O1—C1 | 54.88 (18) | P1—O3—C3—C2 | 57.6 (3) |
O5—P1—O3—C3 | −169.55 (18) | O21—C2—C3—O3 | −173.6 (2) |
O4—P1—O3—C3 | 61.1 (2) | O22—C2—C3—O3 | 65.3 (3) |
O1—P1—O3—C3 | −54.61 (19) | C1—C2—C3—O3 | −53.2 (3) |
P1—O1—C1—C2 | −58.2 (3) | N1—C11—C12—C13 | 179.6 (2) |
C4—O21—C2—O22 | −63.4 (3) | C16—C11—C12—C13 | −57.4 (3) |
C4—O21—C2—C1 | 54.9 (4) | C11—C12—C13—C14 | 57.1 (3) |
C4—O21—C2—C3 | 174.9 (3) | C12—C13—C14—C15 | −56.6 (3) |
C5—O22—C2—O21 | −60.9 (3) | C13—C14—C15—C16 | 56.1 (3) |
C5—O22—C2—C1 | 177.2 (2) | C14—C15—C16—C11 | −56.5 (3) |
C5—O22—C2—C3 | 55.4 (3) | N1—C11—C16—C15 | −179.6 (2) |
O1—C1—C2—O21 | 168.6 (2) | C12—C11—C16—C15 | 57.6 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O5 | 0.91 | 1.81 | 2.718 (3) | 172 |
N1—H3N···O4i | 0.91 | 1.90 | 2.799 (3) | 169 |
N1—H2N···O4ii | 0.91 | 1.90 | 2.809 (3) | 174 |
C3—H3B···O22iii | 0.99 | 2.60 | 3.495 (3) | 150 |
C14—H14A···O5iv | 0.99 | 2.50 | 3.396 (3) | 150 |
Symmetry codes: (i) x−1/2, −y+1/2, −z+1; (ii) x−1, y, z; (iii) −x+1, y+1/2, −z+1/2; (iv) x, y+1, z. |
(5k) 5,5-dimethoxy-2-oxo-1,3,2-dioxaphosphorinane-2-ol
top
Crystal data top
C5H11O6P | Z = 2 |
Mr = 198.11 | F(000) = 208 |
Triclinic, P1 | Dx = 1.574 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.859 (2) Å | Cell parameters from 4920 reflections |
b = 7.114 (3) Å | θ = 2.9–36.8° |
c = 8.939 (3) Å | µ = 0.32 mm−1 |
α = 89.13 (3)° | T = 100 K |
β = 76.00 (3)° | Block, colourless |
γ = 81.18 (3)° | 0.41 × 0.22 × 0.06 mm |
V = 418.1 (3) Å3 | |
Data collection top
Kuma MK4CCD κ-geometry diffractometer with a Sapphire CCD camera | 2274 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 1985 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.016 |
ω scans | θmax = 30.0°, θmin = 2.9° |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | h = −7→9 |
Tmin = 0.970, Tmax = 1.000 | k = −9→9 |
5919 measured reflections | l = −12→12 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.086 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0517P)2 + 0.0903P] where P = (Fo2 + 2Fc2)/3 |
2274 reflections | (Δ/σ)max = 0.001 |
112 parameters | Δρmax = 0.55 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
Crystal data top
C5H11O6P | γ = 81.18 (3)° |
Mr = 198.11 | V = 418.1 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.859 (2) Å | Mo Kα radiation |
b = 7.114 (3) Å | µ = 0.32 mm−1 |
c = 8.939 (3) Å | T = 100 K |
α = 89.13 (3)° | 0.41 × 0.22 × 0.06 mm |
β = 76.00 (3)° | |
Data collection top
Kuma MK4CCD κ-geometry diffractometer with a Sapphire CCD camera | 2274 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | 1985 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 1.000 | Rint = 0.016 |
5919 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.086 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.55 e Å−3 |
2274 reflections | Δρmin = −0.25 e Å−3 |
112 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R-factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
P1 | 0.68955 (4) | 0.65217 (4) | 0.35648 (3) | 0.01657 (10) | |
O1 | 0.91860 (12) | 0.57824 (11) | 0.35335 (9) | 0.01739 (17) | |
O21 | 1.15704 (13) | 0.99762 (12) | 0.28521 (9) | 0.01941 (18) | |
O22 | 1.10726 (12) | 0.79471 (11) | 0.09794 (9) | 0.01591 (17) | |
O3 | 0.69174 (13) | 0.82447 (12) | 0.24609 (10) | 0.01971 (18) | |
O4 | 0.58453 (14) | 0.73620 (12) | 0.51957 (10) | 0.02240 (19) | |
H4 | 0.5262 | 0.6537 | 0.5733 | 0.034* | |
O5 | 0.59591 (14) | 0.49970 (13) | 0.30533 (10) | 0.02284 (19) | |
C1 | 1.04158 (17) | 0.72019 (16) | 0.37282 (13) | 0.0166 (2) | |
H1A | 1.1834 | 0.6586 | 0.3651 | 0.020* | |
H1B | 0.9881 | 0.7820 | 0.4762 | 0.020* | |
C2 | 1.03745 (16) | 0.86932 (15) | 0.24875 (12) | 0.0144 (2) | |
C3 | 0.81960 (17) | 0.96562 (15) | 0.25925 (14) | 0.0185 (2) | |
H3A | 0.7654 | 1.0358 | 0.3591 | 0.022* | |
H3B | 0.8182 | 1.0582 | 0.1756 | 0.022* | |
C4 | 1.1996 (2) | 1.14556 (19) | 0.17759 (15) | 0.0277 (3) | |
H4A | 1.2676 | 1.0891 | 0.0754 | 0.042* | |
H4B | 1.2883 | 1.2230 | 0.2112 | 0.042* | |
H4C | 1.0720 | 1.2260 | 0.1724 | 0.042* | |
C5 | 1.30135 (18) | 0.67544 (17) | 0.06463 (14) | 0.0221 (2) | |
H5A | 1.3985 | 0.7379 | 0.1024 | 0.033* | |
H5B | 1.3500 | 0.6532 | −0.0470 | 0.033* | |
H5C | 1.2884 | 0.5535 | 0.1157 | 0.033* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
P1 | 0.01801 (16) | 0.01863 (16) | 0.01301 (15) | −0.00527 (11) | −0.00219 (10) | 0.00104 (10) |
O1 | 0.0194 (4) | 0.0150 (4) | 0.0177 (4) | −0.0031 (3) | −0.0040 (3) | 0.0027 (3) |
O21 | 0.0243 (4) | 0.0206 (4) | 0.0151 (4) | −0.0103 (3) | −0.0040 (3) | 0.0009 (3) |
O22 | 0.0170 (4) | 0.0180 (4) | 0.0112 (3) | 0.0001 (3) | −0.0023 (3) | −0.0008 (3) |
O3 | 0.0170 (4) | 0.0218 (4) | 0.0212 (4) | −0.0046 (3) | −0.0055 (3) | 0.0064 (3) |
O4 | 0.0255 (4) | 0.0221 (4) | 0.0176 (4) | −0.0091 (3) | 0.0021 (3) | −0.0025 (3) |
O5 | 0.0284 (5) | 0.0280 (4) | 0.0143 (4) | −0.0135 (4) | −0.0036 (3) | 0.0001 (3) |
C1 | 0.0174 (5) | 0.0184 (5) | 0.0150 (5) | −0.0041 (4) | −0.0048 (4) | 0.0025 (4) |
C2 | 0.0160 (5) | 0.0147 (5) | 0.0118 (4) | −0.0029 (4) | −0.0018 (4) | −0.0003 (4) |
C3 | 0.0180 (5) | 0.0150 (5) | 0.0204 (5) | −0.0007 (4) | −0.0019 (4) | 0.0027 (4) |
C4 | 0.0390 (7) | 0.0237 (6) | 0.0231 (6) | −0.0167 (5) | −0.0055 (5) | 0.0044 (5) |
C5 | 0.0203 (5) | 0.0235 (5) | 0.0181 (5) | 0.0036 (4) | −0.0005 (4) | −0.0016 (4) |
Geometric parameters (Å, º) top
P1—O5 | 1.4727 (10) | C1—H1A | 0.99 |
P1—O4 | 1.5453 (11) | C1—H1B | 0.99 |
P1—O3 | 1.5614 (11) | C2—C3 | 1.5267 (16) |
P1—O1 | 1.5721 (10) | C3—H3A | 0.99 |
O1—C1 | 1.4488 (14) | C3—H3B | 0.99 |
O21—C2 | 1.4071 (14) | C4—H4A | 0.98 |
O21—C4 | 1.4304 (16) | C4—H4B | 0.98 |
O22—C2 | 1.3999 (13) | C4—H4C | 0.98 |
O22—C5 | 1.4319 (14) | C5—H5A | 0.98 |
O3—C3 | 1.4543 (15) | C5—H5B | 0.98 |
O4—H4 | 0.84 | C5—H5C | 0.98 |
C1—C2 | 1.5253 (16) | | |
| | | |
O5—P1—O4 | 115.13 (6) | O21—C2—C3 | 111.50 (9) |
O5—P1—O3 | 111.75 (6) | C1—C2—C3 | 110.33 (10) |
O4—P1—O3 | 105.76 (6) | O3—C3—C2 | 110.28 (9) |
O5—P1—O1 | 110.23 (6) | O3—C3—H3A | 109.6 |
O4—P1—O1 | 107.67 (6) | C2—C3—H3A | 109.6 |
O3—P1—O1 | 105.77 (5) | O3—C3—H3B | 109.6 |
C1—O1—P1 | 116.69 (7) | C2—C3—H3B | 109.6 |
C2—O21—C4 | 116.04 (9) | H3A—C3—H3B | 108.1 |
C2—O22—C5 | 115.71 (9) | O21—C4—H4A | 109.5 |
C3—O3—P1 | 118.21 (7) | O21—C4—H4B | 109.5 |
P1—O4—H4 | 109.5 | H4A—C4—H4B | 109.5 |
O1—C1—C2 | 109.72 (9) | O21—C4—H4C | 109.5 |
O1—C1—H1A | 109.7 | H4A—C4—H4C | 109.5 |
C2—C1—H1A | 109.7 | H4B—C4—H4C | 109.5 |
O1—C1—H1B | 109.7 | O22—C5—H5A | 109.5 |
C2—C1—H1B | 109.7 | O22—C5—H5B | 109.5 |
H1A—C1—H1B | 108.2 | H5A—C5—H5B | 109.5 |
O22—C2—O21 | 113.39 (9) | O22—C5—H5C | 109.5 |
O22—C2—C1 | 113.94 (9) | H5A—C5—H5C | 109.5 |
O21—C2—C1 | 102.94 (9) | H5B—C5—H5C | 109.5 |
O22—C2—C3 | 104.92 (9) | | |
| | | |
O5—P1—O1—C1 | 168.89 (7) | C4—O21—C2—O22 | 50.07 (12) |
O4—P1—O1—C1 | −64.78 (9) | C4—O21—C2—C1 | 173.64 (9) |
O3—P1—O1—C1 | 47.93 (9) | C4—O21—C2—C3 | −68.09 (13) |
O5—P1—O3—C3 | −165.89 (7) | O1—C1—C2—O22 | −58.34 (12) |
O4—P1—O3—C3 | 68.13 (9) | O1—C1—C2—O21 | 178.45 (8) |
O1—P1—O3—C3 | −45.92 (9) | O1—C1—C2—C3 | 59.37 (11) |
P1—O1—C1—C2 | −57.28 (11) | P1—O3—C3—C2 | 53.06 (11) |
C5—O22—C2—O21 | 65.74 (12) | O22—C2—C3—O3 | 66.19 (11) |
C5—O22—C2—C1 | −51.58 (13) | O21—C2—C3—O3 | −170.68 (8) |
C5—O22—C2—C3 | −172.36 (9) | C1—C2—C3—O3 | −56.94 (12) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4···O5i | 0.84 | 1.70 | 2.533 (2) | 175 |
C1—H1B···O21ii | 0.99 | 2.57 | 3.544 (2) | 169 |
C3—H3B···O22iii | 0.99 | 2.61 | 3.560 (2) | 161 |
C5—H5B···O5iv | 0.98 | 2.49 | 3.423 (2) | 159 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+2, −y+2, −z+1; (iii) −x+2, −y+2, −z; (iv) −x+2, −y+1, −z. |
Experimental details
| (5i) | (5j) | (5k) |
Crystal data |
Chemical formula | C6H14N+·C5H10O6P−·H2O | C6H14N+·C5H10O6P− | C5H11O6P |
Mr | 315.30 | 297.28 | 198.11 |
Crystal system, space group | Triclinic, P1 | Orthorhombic, P212121 | Triclinic, P1 |
Temperature (K) | 100 | 120 | 100 |
a, b, c (Å) | 7.064 (2), 8.475 (4), 13.966 (6) | 6.678 (2), 8.877 (2), 24.930 (6) | 6.859 (2), 7.114 (3), 8.939 (3) |
α, β, γ (°) | 102.48 (3), 92.58 (3), 99.96 (3) | 90, 90, 90 | 89.13 (3), 76.00 (3), 81.18 (3) |
V (Å3) | 801.1 (6) | 1477.9 (7) | 418.1 (3) |
Z | 2 | 4 | 2 |
Radiation type | Mo Kα | Cu Kα | Mo Kα |
µ (mm−1) | 0.20 | 1.86 | 0.32 |
Crystal size (mm) | 0.37 × 0.23 × 0.04 | 0.13 × 0.08 × 0.01 | 0.41 × 0.22 × 0.06 |
|
Data collection |
Diffractometer | Kuma KM4CCD κ-geometry diffractometer with a Sapphire CCD camera | Oxford Diffraction Xcalibur PX κ-geometry diffractometer
with an Onyx CCD camera | Kuma MK4CCD κ-geometry diffractometer with a Sapphire CCD camera |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2009) | Analytical (CrysAlis RED; Oxford Diffraction, 2009) | Multi-scan (CrysAlis RED; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.913, 1.000 | 0.832, 0.978 | 0.970, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13552, 4519, 3579 | 11210, 2803, 1876 | 5919, 2274, 1985 |
Rint | 0.025 | 0.062 | 0.016 |
(sin θ/λ)max (Å−1) | 0.703 | 0.630 | 0.703 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.094, 1.03 | 0.037, 0.060, 1.02 | 0.030, 0.086, 1.08 |
No. of reflections | 4519 | 2803 | 2274 |
No. of parameters | 190 | 175 | 112 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.49, −0.18 | 0.21, −0.21 | 0.55, −0.25 |
Absolute structure | ? | Flack (1983), with how many Friedel pairs? | ? |
Absolute structure parameter | ? | −0.03 (3) | ? |
Values of ϕ1, ϕ2 and the Cremer–Pople puckering parameters Q,
θ and ϕ for the P/O1/C1/C2/C3/O3 rings in the (MeO)2cDHAP anions in (5i)
and (5j) and in the molecule of (5k), along with the relevant values for the
previously reported compounds (4), (5a) and (5b) topCompound | ϕ1 (°) | ϕ2 (°) | |ϕ2 - ϕ1| (°) | Q (Å) | θ (°) | ϕ (°) |
(5i) | 46.9 (1) | 52.4 (1) | 5.5 | 0.580 (1) | 176.4 (1) | 280 (2) |
(5j) | 47.4 (2) | 48.0 (3) | 0.6 | 0.558 (2) | 176.0 (2) | 189 (4) |
(5k) | 40.4 (1) | 53.0 (1) | 12.6 | 0.541 (1) | 171.1 (1) | 342 (1) |
(5a)a | 47.3 (1) | 50.8 (1) | 3.6 | 0.573 (1) | 178.4 (1) | 234 (4) |
(5b)a | 48.2 (1) | 50.3 (1) | 2.1 | 0.577 (1) | 177.5 (1) | 199 (2) |
(4)b | 35.9 (1) | 51.8 (2) | 15.9 | 0.514 (2) | 167.5 (2) | 349 (1) |
References: (a) Ślepokura (2008) {(5a) is (cha)[(MeO)2cDHAP].3H2O
and
(5b) is monoclinic (cha)[(MeO)2cDHAP].H2O};
(b) Ślepokura & Lis (2004b) [(4) is (MeO)2cDHAP(Ph)]. |
Selected geometric parameters (Å, °) for (5i)–(5k). topBond/angle | (5i) | (5j) | (5k) |
P1—O1 | 1.6061 (10) | 1.59329 (18) | 1.5721 (10) |
P1—O3 | 1.6004 (10) | 1.6013 (18) | 1.5614 (11) |
P1—O4 | 1.4866 (10) | 1.4846 (18) | 1.5453 (11) |
P1—O5 | 1.4784 (11) | 1.4753 (18) | 1.4727 (10) |
O1—C1 | 1.4343 (14) | 1.445 (3) | 1.4488 (14) |
O21—C2 | 1.4118 (13) | 1.415 (3) | 1.4071 (14) |
O21—C4 | 1.4328 (15) | 1.436 (4) | 1.4304 (16) |
O22—C2 | 1.4080 (13) | 1.417 (3) | 1.3999 (13) |
O22—C5 | 1.4229 (15) | 1.431 (3) | 1.4319 (14) |
O3—C3 | 1.4304 (14) | 1.425 (3) | 1.4543 (15) |
C1—C2 | 1.5270 (15) | 1.510 (4) | 1.5253 (16) |
C2—C3 | 1.5297 (16) | 1.515 (4) | 1.5267 (16) |
O1—P1—O3 | 102.13 (5) | 101.74 (10) | 105.77 (5) |
O1—P1—O4 | 109.24 (5) | 109.49 (9) | 107.67 (6) |
O1—P1—O5 | 107.69 (5) | 109.15 (10) | 110.23 (6) |
O3—P1—O4 | 109.74 (5) | 109.33 (10) | 105.76 (6) |
O3—P1—O5 | 106.58 (6) | 108.30 (11) | 111.75 (6) |
O4—P1—O5 | 119.97 (5) | 117.64 (11) | 115.13 (6) |
P1—O1—C1 | 114.57 (7) | 115.64 (17) | 116.69 (7) |
C2—O21—C4 | 114.41 (9) | 114.8 (3) | 116.04 (9) |
C2—O22—C5 | 115.66 (9) | 115.2 (2) | 115.71 (9) |
P1—O3—C3 | 116.69 (7) | 115.64 (17) | 118.21 (7) |
O1—C1—C2 | 109.64 (9) | 111.5 (2) | 109.72 (9) |
O21—C2—O22 | 111.81 (9) | 111.8 (2) | 113.39 (9) |
O21—C2—C1 | 104.21 (9) | 111.8 (2) | 102.94 (9) |
O22—C2—C1 | 113.65 (9) | 105.7 (3) | 113.94 (9) |
O21—C2—C3 | 112.14 (9) | 103.7 (2) | 111.50 (9) |
O22—C2—C3 | 105.01 (9) | 112.7 (2) | 104.92 (9) |
C1—C2—C3 | 110.21 (9) | 111.3 (2) | 110.33 (10) |
O3—C3—C2 | 110.72 (9) | 112.2 (2) | 110.28 (9) |
O3—P1—O1—C1 | 55.31 (8) | 54.88 (18) | 47.93 (9) |
O4—P1—O1—C1 | -60.85 (8) | -60.73 (19) | -64.78 (9) |
O5—P1—O1—C1 | 167.33 (7) | 169.19 (17) | 168.89 (7) |
O1—P1—O3—C3 | -52.80 (8) | -54.61 (19) | -45.92 (9) |
O4—P1—O3—C3 | 63.00 (9) | 61.1 (2) | 68.13 (9) |
O5—P1—O3—C3 | -165.65 (7) | -169.55 (18) | -165.89 (7) |
P1—O1—C1—C2 | -62.20 (9) | -58.2 (3) | -57.28 (11) |
P1—O3—C3—C2 | 56.68 (10) | 57.6 (3) | 53.06 (11) |
C4—O21—C2—O22 | 60.27 (12) | -63.4 (3) | 50.07 (12) |
C4—O21—C2—C1 | -176.57 (8) | 54.9 (4) | 173.64 (9) |
C4—O21—C2—C3 | -57.38 (12) | 174.9 (3) | -68.09 (13) |
C5—O22—C2—O21 | 67.92 (11) | -60.9 (3) | 65.74 (12) |
C5—O22—C2—C1 | -49.72 (12) | 177.2 (2) | -51.58 (13) |
C5—O22—C2—C3 | -170.24 (9) | 55.4 (3) | -172.36 (9) |
O1—C1—C2—O21 | 179.58 (7) | 168.6 (2) | 178.45 (8) |
O1—C1—C2—O22 | -58.46 (11) | -69.6 (3) | -58.34 (12) |
O1—C1—C2—C3 | 59.08 (11) | 53.1 (3) | 59.37 (11) |
O21—C2—C3—O3 | -171.66 (8) | -173.6 (2) | -170.68 (8) |
O22—C2—C3—O3 | 66.71 (11) | 65.3 (3) | 66.19 (11) |
C1—C2—C3—O3 | -56.06 (11) | -53.2 (3) | -56.94 (12) |
Hydrogen-bond geometry (Å, °) for (5i)–(5k) topCompound | D—H···A | D—H | H···A | D···A | D—H···A |
(5i) | N1—H1N···O5 | 0.91 | 1.87 | 2.758 (2) | 166 |
| N1—H2N···O5i | 0.91 | 1.96 | 2.817 (2) | 157 |
| N1—H3N···O1Wii | 0.91 | 1.87 | 2.719 (2) | 154 |
| O1W—H1W···O4 | 0.83 (2) | 1.92 (2) | 2.749 (2) | 176 (2) |
| O1W—H2W···O4iii | 0.83 (2) | 1.93 (2) | 2.758 (2) | 176 (2) |
| C4—H4A···O1iv | 0.98 | 2.60 | 3.534 (2) | 159 |
| C11—H11···O1Wiii | 1.00 | 2.52 | 3.416 (2) | 149 |
(5j) | N1—H1N···O5 | 0.91 | 1.81 | 2.718 (3) | 172 |
| N1—H2N···O4ii | 0.91 | 1.90 | 2.809 (3) | 174 |
| N1—H3N···O4v | 0.91 | 1.90 | 2.799 (3) | 169 |
| C3—H3B···O22vi | 0.99 | 2.60 | 3.495 (3) | 150 |
| C14—H14A···O5vii | 0.99 | 2.50 | 3.396 (3) | 150 |
(5k) | O4—H4···O5iii | 0.84 | 1.70 | 2.533 (2) | 175 |
| C1—H1A···O21viii | 0.99 | 2.57 | 3.544 (2) | 169 |
| C3—H3b···O22ix | 0.99 | 2.61 | 3.560 (2) | 161 |
| C5—H5B···O5x | 0.98 | 2.49 | 3.423 (2) | 159 |
Symmetry codes: (i) -x, -y, -z + 1; (ii) x - 1, y, z;
(iii) -x + 1, -y + 1, -z + 1; (iv) x + 1, y, z; (v) x - 1/2, -y + 1/2, -z + 1;
(vi) -x + 1, y + 1/2, -z + 1/2; (vii) x, y + 1, z. (viii) -x + 2, -y + 2,
-z + 1; (ix) -x + 2, -y + 2, -z; (x) -x + 2, -y + 1, -z. |
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Six-membered cyclic phosphate esters are constituents of a number of biologically important molecules such as 3':5'-cyclic nucleotides, e.g. cAMP. Dihydroxyacetone phosphate (DHAP), the linear form of cDHAP, is one of the most important biochemical intermediates and of high importance for all living cells [for a review, see Ślepokura & Lis (2010)]. The cyclic form, cDHAP, became interesting recently as a new molecule of biological importance (Goswami & Adak, 2002). Occurring in living organisms, small cyclic phosphates of cDHAP-like structure began to attract attention when their biological activity as signalling molecules had been suggested (Shinitzky et al., 2000). Cyclic glycerophosphates can be formed by enzymatic degradation of phospholipids, e.g. 1,3-cyclic glycerophosphate is naturally formed by the action of phospholipase C on phosphatidyl glycerol.
Only five of over 160 hits for cyclic phosphates with six-membered rings deposited with the Cambridge Structural Database (CSD, Version 5.32; Allen, 2002) bear the H atom at the exocyclic O atom. We will discuss just three of the reported protonated cyclic phosphates [CSD refcodes ETPHOS (Gerlt et al., 1980), KADPUA (Johnson et al., 1989) and SEZRUL (Samas et al., 2007)], because the remaining two have high R factors and low bond precision, and the positions of the H atoms were not determined. The present paper concerns the synthesis and crystal structure of 5,5-dimethoxy-2-oxo-1,3,2-dioxaphosphorinane-2-ol, the dimethyl acetal of cyclic dihydroxyacetone phosphate, (MeO)2cDHAP, in the form of two crystalline cyclohexylammonium (cha) salts, (cha)[(MeO)2cDHAP].H2O, (5i) [polymorphous form of (5b)], and anhydrous (cha)[(MeO)2cDHAP], (5j), as well as in the form of the acid, (MeO)2cDHAP, (5k).
Previously, we have reported the synthesis and structural investigations of nine different salts of (MeO)2cDHAP with both organic and inorganic cations [(5a)–(5e) and (5e')–(5h); Ślepokura, 2008], along with its phenyl derivative, (MeO)2cDHAP(Ph) [(4); Ślepokura & Lis, 2004b]. Among these, the structures of two cha salts and the acid in the form of an oxonium salt were presented: (cha)[(MeO)2cDHAP].3H2O, (5a), (cha)[(MeO)2cDHAP].H2O, (5b), and (H5O2)[(MeO)2cDHAP], (5c). Here, the conformation of the P/O/C/C/C/O 1,3,2-dioxaphosphorinane ring in (5i)–(5k) will be compared with that in the previously reported (MeO)2cDHAP salts (5a)–(5h), as well as with that of the phenyl derivative, (4). In addition, the arrangements in the crystal structures will be presented, with an emphasis on the comparison of the crystal packing diagrams of two polymorphous forms of (cha)[(MeO)2cDHAP].H2O, monoclinic (5b) (Ślepokura, 2008) and triclinic (5i) (this work).
The overall structures of the (MeO)2cDHAP anions in compounds (5i) and (5j) bear great similarities with each other and with the previously reported anions in (5a)–(5h) (Ślepokura, 2008). The six-membered 1,3,2-dioxaphosphorinane ring adopts a chair (C) conformation only slightly distorted towards an envelope (E), which is reflected in the values of the dihedral angles between the least-squares plane through the four central atoms of the ring (O1/O3/C1/C3) and the O1/P/O3 and C1/C2/C3 planes (ϕ1 and ϕ2), as well as in the Cremer–Pople puckering parameters (Cremer & Pople, 1975; see Table 1). The values of |ϕ2 - ϕ1| for (5a)–(5j) clearly show that the flattening of the dioxaphosphorinane ring at the P atom is negligible in the (MeO)2cDHAP anions and that the conformation of the rings is close to an ideal chair.
Selected geometric parameters for (5i)–(5k) are given in Table 2. The deformation of the phosphate group from the ideal tetrahedral shape, which was been observed previously in (5a)–(5h), is also observed in (5i) and (5j). The deformation of the ionized cyclic phosphate is especially seen in the endocyclic O1—P1—O3 and exocyclic O4—P1—O5 bond angles, which are, respectively, the smallest (about 102° on average [Vague. Please give either arithmetic mean, with s.u., or actual smallest value]) and the largest [119.97 (5)°]. The values of the endo- and exocyclic O—P—O angles correlate with the respective P—O bond lengths. In all the known (MeO)2cDHAP anions, the P—Oendo bonds are about 1.6 Å, more than 0.1 Å longer than the P—Oexo bonds.
A completely different deformation reveals the protonated phosphate group of the (MeO)2cDHAP molecule in (5k). The hydroxyl group in (5k) adopts an axial position similar to the previously reported structures ETPHOS, KADPUA and SEZRUL. As can be seen by the P—Oendo, P—O(H) and P═O distances, the protonation of the phosphate group affects to a larger extent the length of the P—Oendo bonds (becoming on average 0.03 Å shorter than in the anion) than that of the exocyclic equatorially oriented P1═O5 bond [becoming formally double, but only slightly shortened compared with the P—Oexo bonds in the (MeO)2cDHAP anions]. Within the O—P—O angles in (5k), the exocyclic O4—P1—O5 angle is the largest [115.13 (6)°], although none of them is distinctly smaller than the others. Instead, in the protonated phosphate group, three lower values for the angles involving endocyclic O atoms and three higher values for the angles involving P═O bonds are observed. It may be noted that the geometry of the phosphate group in (5k) is similar to that observed in the phenyl derivative, (4). These differences in the deformations observed in the ionized and protonated phosphate groups are accompanied by different distortions of the P/O/C/C/C/O rings. In contrast with the almost ideal chair conformation in the (MeO)2cDHAP anions of (5a)–(5j), the ring in acidic (5k) is significantly flattened at the P atom (see Table 1), which is comparable with the conformations observed in phenyl derivative (4) and the two acidic cyclic phosphates, ETPHOS and SEZRUL.
It has been shown that the acetal group in the analogous linear compounds, (MeO)2DHAP and (MeO)2DHAP(Ph) [(6a)–(6e) [Two structures given but five compounds implied - please clarify]; Ślepokura & Lis, 2006], and in the unphosphorylated species (MeO)2DHA [(3); Ślepokura & Lis, 2004a], seems to be very rigid, and its conformation is independent of phosphorylation, the ionization state of the inserted phosphate group, or additional substitution. It is likely that such a conformation is determined and stabilized by the generalized anomeric effect. The acetal group in the cyclic compounds (5i)–(5k), as in (4) and (5a)–(5h), reveals some common features with linear (3) and (6a)–(6e): the relevant C4—O21—C2—O22 and C5—O22—C2—O21 torsion angles show a synclinal orientation of the methyl groups (C4 and C5) in relation to the acetal atoms O22 and O21. Similarly, as was observed in the structures of (3), (4), (5a)–(5h) and (6a)–(6e), two of the angles with their vertex on acetal atom C2 are much smaller than the others (Table 2).
The cations and anions in (5i) and (5j) are arranged in a way that leads to the aggregation of their hydrophilic and hydrophobic groups into distinct regions in the crystals. The packing schemes of (5i) and (5j) are dominated by N+—H···O- hydrogen bonds, but in the hydrated salt (5i), as in (5a) and (5b) (Ślepokura, 2008), an additional important role is played by contacts of N+—H···Ow and Ow—H···O- type (Ow is the water O atom). Geometric parameters of hydrogen bonds and close contacts are given in Table 3.
The crystal structure of the monohydrated salt (5i) has a layered architecture (Fig. 2), similar to that observed in the other hydrated cha salts, (5a) and (5b). Each cha cation is directly linked by two charge–assisted N—H···O hydrogen bonds to two adjacent (MeO)2cDHAP anions, resulting in centrosymmetric R42(8) motifs (Fig. 3) [see Bernstein et al. (1995) for graph-set notation]. The same cation is linked to two additional anions via water-mediated hydrogen bonds. Thus, another type of ring is formed, R66(16), this time also involving water molecules in addition to cha cations and (MeO)2cDHAP anions. Another R42(8) ring results from the centrosymmetric Ow—H···O- bonds between two water molecules and two anions. The sequence of these three rings generates double layers parallel to the (001) plane, as shown in Figs. 2 and 3. The same types of interaction, namely cation···anion, cation···H2O···anion and anion···H2O···anion, were also observed in the polymorphous salt (5b). However, as shown in Fig. 3, the construction of the layers observed in (5b) is different: three unique rings generate the layer, R44(12) involving two cations and two anions, R54(12) involving one cation, two anions and two water molecules, and R64(12) involving two cations, two anions and two water molecules.
The arrangement of organic ions in the crystal structuree of the anhydrous salt (5j) is different. Each cha cation is linked directly by three N+—H···O- hydrogen bonds to three adjacent (MeO)2cDHAP anions. These interactions generate R43(10) rings forming ribbons with ladder-type hydrogen bonding along the a axis, as shown in Fig. 4.
The crystal packing of (5k) is determined by the strong centrosymmetric almost linear O—H···O hydrogen bonds formed by the phosphate groups of two adjacent (MeO)2cDHAP molecules. In this way, centrosymmetric molecular dimers are formed (Fig. 5), giving rise to R22(8) rings. Adjacent dimers interact with each other via weak C—H···O contacts, as shown in Fig. 5, resulting in ribbons along [101].
In conclusion, we have shown that protonation of the cyclic phosphate group influences the conformation of the 1,3,2-dioxaphosphorinane ring, causing its flattening, i.e. deformation from the ideal chair towards an envelope. In other words, the ring is more evenly puckered in compounds with an ionized phosphate group than in the acid molecule. We have also demonstrated that differences in the ring conformation correlate with different deformations observed in the ionized and protonated phosphate groups. Some common features for analogous protonated and esterified compounds have been revealed. In addition, we have shown that the arrangement of the ions in the crystal structures of four different (cha)[(MeO)2cDHAP] salts results in different crystal architectures, depending on water content, and gives rise to layers in hydrated (5a), (5b) and (5i) and to ribbons in anhydrous (5j). Furthermore, a comparison of the layer constructions observed in monoclinic and triclinic (cha)[(MeO)2cDHAP].H2O has been reported.
[As so many compounds are cited for comparison, it would be helpful for the reader if a second scheme were provided illustrating these. Please consider providing such an additional scheme]