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In the crystal structure of the title compound, C
10H
16O
2, the hydroxyl groups are involved in both intra- and intermolecular hydrogen bonding. Molecules are arranged in discrete layers propagated by a network of O—H
O hydrogen-bonding interactions. The asymmetric unit comprises one chiral molecule but the presence of a crystallographic centre of inversion leads to racemic crystals.
Supporting information
CCDC reference: 601213
Key indicators
- Single-crystal X-ray study
- T = 83 K
- Mean (C-C) = 0.002 Å
- R factor = 0.061
- wR factor = 0.176
- Data-to-parameter ratio = 26.1
checkCIF/PLATON results
No syntax errors found
Alert level B
ABSTM02_ALERT_3_B The ratio of expected to reported Tmax/Tmin(RR') is < 0.75
Tmin and Tmax reported: 0.684 1.000
Tmin(prime) and Tmax expected: 0.967 0.991
RR(prime) = 0.701
Please check that your absorption correction is appropriate.
DIFMX01_ALERT_2_B The maximum difference density is > 0.1*ZMAX*1.00
_refine_diff_density_max given = 0.840
Test value = 0.800
PLAT061_ALERT_3_B Tmax/Tmin Range Test RR' too Large ............. 0.70
PLAT097_ALERT_2_B Maximum (Positive) Residual Density ............ 0.84 e/A 3
| Author Response: The top peaks in the final differnce Fourier progressively
decrease (0.84, 0.75, 0.63, 0.53, 0.44, 0.43....) and unfortunately while
the first peak is quite high we were unable to describe it as anything that
would be chemically sensible.
|
Alert level C
DIFMX02_ALERT_1_C The maximum difference density is > 0.1*ZMAX*0.75
The relevant atom site should be identified.
PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.28
0 ALERT level A = In general: serious problem
4 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
3 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: APEXII (Bruker 2004); cell refinement: APEXII and SAINT (Bruker 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997) and POV-RAY (Persistence of Vision,
2004); software used to prepare material for publication: enCIFer (Allen et al., 2004).
Crystal data top
C10H16O2 | F(000) = 736 |
Mr = 168.23 | Dx = 1.339 Mg m−3 |
Orthorhombic, Pccn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ab 2ac | Cell parameters from 2252 reflections |
a = 9.6159 (3) Å | θ = 3.4–32.6° |
b = 20.6781 (7) Å | µ = 0.09 mm−1 |
c = 8.3921 (2) Å | T = 83 K |
V = 1668.67 (9) Å3 | Block, colourless |
Z = 8 | 0.36 × 0.24 × 0.10 mm |
Data collection top
Bruker Kappa-APEX-II area-detector diffractometer | 2845 independent reflections |
Radiation source: fine-focus sealed tube | 2252 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.059 |
φ and ω scans | θmax = 32.7°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −13→13 |
Tmin = 0.684, Tmax = 1.000 | k = −30→31 |
41081 measured reflections | l = −11→12 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.061 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.176 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0791P)2 + 1.9937P] where P = (Fo2 + 2Fc2)/3 |
2845 reflections | (Δ/σ)max = 0.001 |
109 parameters | Δρmax = 0.84 e Å−3 |
0 restraints | Δρmin = −0.37 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | −0.13529 (11) | 0.53630 (5) | 0.09461 (12) | 0.0133 (2) | |
H1A | −0.2032 | 0.5204 | 0.1438 | 0.020* | |
O2 | 0.13649 (12) | 0.51341 (5) | 0.22384 (13) | 0.0182 (3) | |
H2A | 0.1086 | 0.5052 | 0.1312 | 0.027* | |
C1 | −0.06880 (14) | 0.58392 (6) | 0.19276 (15) | 0.0095 (2) | |
C2 | 0.03234 (15) | 0.55025 (7) | 0.30695 (16) | 0.0134 (3) | |
H2B | −0.0214 | 0.5206 | 0.3782 | 0.016* | |
C3 | 0.10813 (15) | 0.60078 (7) | 0.41011 (16) | 0.0146 (3) | |
H3A | 0.1749 | 0.5786 | 0.4833 | 0.017* | |
C4 | 0.18742 (16) | 0.64722 (8) | 0.30032 (18) | 0.0173 (3) | |
H4A | 0.2563 | 0.6227 | 0.2367 | 0.021* | |
H4B | 0.2382 | 0.6795 | 0.3653 | 0.021* | |
C5 | 0.08549 (16) | 0.68195 (7) | 0.18849 (17) | 0.0163 (3) | |
H5A | 0.1376 | 0.7126 | 0.1184 | 0.020* | |
C6 | −0.02213 (17) | 0.71906 (7) | 0.28638 (18) | 0.0179 (3) | |
H6A | −0.0885 | 0.7409 | 0.2140 | 0.021* | |
H6B | 0.0250 | 0.7526 | 0.3509 | 0.021* | |
C7 | −0.10082 (15) | 0.67278 (7) | 0.39624 (17) | 0.0144 (3) | |
H7A | −0.1707 | 0.6974 | 0.4604 | 0.017* | |
C8 | 0.00006 (16) | 0.63765 (7) | 0.50756 (17) | 0.0155 (3) | |
H8A | 0.0472 | 0.6694 | 0.5773 | 0.019* | |
H8B | −0.0520 | 0.6071 | 0.5760 | 0.019* | |
C9 | 0.01004 (15) | 0.63076 (7) | 0.08472 (16) | 0.0148 (3) | |
H9A | −0.0558 | 0.6524 | 0.0114 | 0.018* | |
H9B | 0.0788 | 0.6067 | 0.0199 | 0.018* | |
C10 | −0.17528 (15) | 0.62165 (7) | 0.29281 (17) | 0.0140 (3) | |
H10A | −0.2271 | 0.5914 | 0.3622 | 0.017* | |
H10B | −0.2428 | 0.6432 | 0.2214 | 0.017* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0127 (5) | 0.0181 (5) | 0.0091 (4) | −0.0048 (4) | −0.0003 (3) | −0.0032 (3) |
O2 | 0.0179 (5) | 0.0219 (5) | 0.0148 (5) | 0.0098 (4) | −0.0063 (4) | −0.0083 (4) |
C1 | 0.0095 (6) | 0.0118 (6) | 0.0072 (5) | −0.0010 (4) | −0.0006 (4) | −0.0009 (4) |
C2 | 0.0155 (6) | 0.0149 (6) | 0.0098 (5) | 0.0023 (5) | −0.0007 (5) | −0.0005 (4) |
C3 | 0.0137 (6) | 0.0194 (6) | 0.0107 (6) | 0.0041 (5) | −0.0013 (5) | −0.0002 (4) |
C4 | 0.0126 (6) | 0.0229 (7) | 0.0163 (6) | −0.0009 (5) | 0.0008 (5) | −0.0009 (5) |
C5 | 0.0157 (6) | 0.0197 (7) | 0.0136 (6) | −0.0029 (5) | 0.0011 (5) | 0.0032 (5) |
C6 | 0.0199 (7) | 0.0148 (6) | 0.0190 (7) | 0.0000 (5) | 0.0001 (5) | 0.0019 (5) |
C7 | 0.0134 (6) | 0.0161 (6) | 0.0136 (6) | 0.0034 (5) | 0.0010 (5) | −0.0005 (5) |
C8 | 0.0161 (6) | 0.0187 (6) | 0.0117 (6) | 0.0029 (5) | 0.0009 (5) | −0.0006 (5) |
C9 | 0.0152 (6) | 0.0186 (6) | 0.0104 (6) | −0.0024 (5) | 0.0000 (5) | 0.0020 (5) |
C10 | 0.0115 (6) | 0.0172 (6) | 0.0133 (6) | 0.0004 (5) | 0.0003 (5) | −0.0016 (5) |
Geometric parameters (Å, º) top
O1—C1 | 1.4343 (15) | C5—C6 | 1.528 (2) |
O1—H1A | 0.8400 | C5—C9 | 1.551 (2) |
O2—C2 | 1.4387 (17) | C5—H5A | 1.0000 |
O2—H2A | 0.8400 | C6—C7 | 1.529 (2) |
C1—C9 | 1.5279 (18) | C6—H6A | 0.9900 |
C1—C2 | 1.5327 (19) | C6—H6B | 0.9900 |
C1—C10 | 1.5369 (19) | C7—C8 | 1.530 (2) |
C2—C3 | 1.540 (2) | C7—C10 | 1.544 (2) |
C2—H2B | 1.0000 | C7—H7A | 1.0000 |
C3—C8 | 1.526 (2) | C8—H8A | 0.9900 |
C3—C4 | 1.534 (2) | C8—H8B | 0.9900 |
C3—H3A | 1.0000 | C9—H9A | 0.9900 |
C4—C5 | 1.535 (2) | C9—H9B | 0.9900 |
C4—H4A | 0.9900 | C10—H10A | 0.9900 |
C4—H4B | 0.9900 | C10—H10B | 0.9900 |
| | | |
C1—O1—H1A | 109.5 | C9—C5—H5A | 109.7 |
C2—O2—H2A | 109.5 | C5—C6—C7 | 110.18 (12) |
O1—C1—C9 | 108.40 (10) | C5—C6—H6A | 109.6 |
O1—C1—C2 | 109.27 (10) | C7—C6—H6A | 109.6 |
C9—C1—C2 | 110.13 (11) | C5—C6—H6B | 109.6 |
O1—C1—C10 | 111.43 (11) | C7—C6—H6B | 109.6 |
C9—C1—C10 | 109.45 (11) | H6A—C6—H6B | 108.1 |
C2—C1—C10 | 108.17 (10) | C6—C7—C8 | 110.58 (12) |
O2—C2—C1 | 112.28 (10) | C6—C7—C10 | 108.60 (12) |
O2—C2—C3 | 107.60 (11) | C8—C7—C10 | 108.19 (11) |
C1—C2—C3 | 110.09 (11) | C6—C7—H7A | 109.8 |
O2—C2—H2B | 108.9 | C8—C7—H7A | 109.8 |
C1—C2—H2B | 108.9 | C10—C7—H7A | 109.8 |
C3—C2—H2B | 108.9 | C3—C8—C7 | 109.98 (11) |
C8—C3—C4 | 110.34 (12) | C3—C8—H8A | 109.7 |
C8—C3—C2 | 108.53 (12) | C7—C8—H8A | 109.7 |
C4—C3—C2 | 108.80 (11) | C3—C8—H8B | 109.7 |
C8—C3—H3A | 109.7 | C7—C8—H8B | 109.7 |
C4—C3—H3A | 109.7 | H8A—C8—H8B | 108.2 |
C2—C3—H3A | 109.7 | C1—C9—C5 | 109.36 (11) |
C3—C4—C5 | 110.04 (12) | C1—C9—H9A | 109.8 |
C3—C4—H4A | 109.7 | C5—C9—H9A | 109.8 |
C5—C4—H4A | 109.7 | C1—C9—H9B | 109.8 |
C3—C4—H4B | 109.7 | C5—C9—H9B | 109.8 |
C5—C4—H4B | 109.7 | H9A—C9—H9B | 108.2 |
H4A—C4—H4B | 108.2 | C1—C10—C7 | 110.23 (11) |
C6—C5—C4 | 109.80 (12) | C1—C10—H10A | 109.6 |
C6—C5—C9 | 109.14 (12) | C7—C10—H10A | 109.6 |
C4—C5—C9 | 108.82 (12) | C1—C10—H10B | 109.6 |
C6—C5—H5A | 109.7 | C7—C10—H10B | 109.6 |
C4—C5—H5A | 109.7 | H10A—C10—H10B | 108.1 |
| | | |
O1—C1—C2—O2 | 58.47 (14) | C5—C6—C7—C8 | 58.37 (15) |
C9—C1—C2—O2 | −60.49 (14) | C5—C6—C7—C10 | −60.20 (15) |
C10—C1—C2—O2 | 179.94 (11) | C4—C3—C8—C7 | 57.96 (15) |
O1—C1—C2—C3 | 178.32 (11) | C2—C3—C8—C7 | −61.17 (15) |
C9—C1—C2—C3 | 59.36 (14) | C6—C7—C8—C3 | −57.91 (15) |
C10—C1—C2—C3 | −60.21 (14) | C10—C7—C8—C3 | 60.90 (15) |
O2—C2—C3—C8 | −176.45 (11) | O1—C1—C9—C5 | −178.82 (11) |
C1—C2—C3—C8 | 60.90 (14) | C2—C1—C9—C5 | −59.32 (14) |
O2—C2—C3—C4 | 63.46 (14) | C10—C1—C9—C5 | 59.47 (14) |
C1—C2—C3—C4 | −59.19 (14) | C6—C5—C9—C1 | −60.02 (14) |
C8—C3—C4—C5 | −58.53 (15) | C4—C5—C9—C1 | 59.79 (15) |
C2—C3—C4—C5 | 60.44 (15) | O1—C1—C10—C7 | −179.64 (10) |
C3—C4—C5—C6 | 58.54 (16) | C9—C1—C10—C7 | −59.76 (14) |
C3—C4—C5—C9 | −60.85 (15) | C2—C1—C10—C7 | 60.24 (14) |
C4—C5—C6—C7 | −58.44 (16) | C6—C7—C10—C1 | 59.48 (14) |
C9—C5—C6—C7 | 60.76 (15) | C8—C7—C10—C1 | −60.59 (14) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O1 | 0.84 | 2.45 | 2.8688 (15) | 112 |
O1—H1A···O2i | 0.84 | 2.02 | 2.8625 (15) | 176 |
O2—H2A···O1ii | 0.84 | 2.10 | 2.8633 (14) | 152 |
Symmetry codes: (i) x−1/2, −y+1, −z+1/2; (ii) −x, −y+1, −z. |
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