Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680702908X/lh2421sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680702908X/lh2421Isup2.hkl |
CCDC reference: 655005
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.004 Å
- R factor = 0.060
- wR factor = 0.176
- Data-to-parameter ratio = 17.4
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT230_ALERT_2_B Hirshfeld Test Diff for O2 - C7 .. 18.26 su
Alert level C PLAT230_ALERT_2_C Hirshfeld Test Diff for O1 - C3 .. 5.81 su PLAT230_ALERT_2_C Hirshfeld Test Diff for O1 - C6 .. 6.58 su
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 2 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Pyrimidine derivatives have been studied because of their biological properties (see Koppel et al., 1961; Zhang & Wang, 1988; Nezu & Miyazaki, 1996).
To a solution of 4,6-dichloro-2-(methylthio)-5-phenylpyrimidine (10 mmol) in absolute Methanol (20 ml), a solution of sodium methoxide (20 mmol) in absolute methanol (20 ml) was added dropwise and refluxed for 6 h. After this time the reaction mixture was concentrated to a residual solid. The solid was dissolved in 50 ml of ethyl acetate, washed with water, dried and evaporated under reduced pressure to give a white solid. The solid was recrystallized from CH2Cl2. Colourless block-shaped crystals were obtained by evaporation of the solvent over a period of one week.
After their location in the difference map, all H-atoms were fixed geometrically at ideal positions and allowed to ride on the parent C atoms with Caromatic—H = 0.93 Å and Cmethyl—H = 0.96 Å, Uiso(H)= 1.2Ueq(C of aromatic) or Uiso(H)= 1.5Ueq(C of methine).
Pyrimidine derivates are important intermediates for some pesticides. Many new pyrimidine derivates have been intensively studied due to their biological properties (Koppel et al., 1961; Zhang et al., 1988; Nezu et al., 1996). We report here the synthesis and crystal structure of the title compound (Fig. 1).
There are two independent molecules in the asymmetric unit of the title structure (Fig. 1). The molecules differ from each other in that the dihedral angles between the phenyl ring and pyrimidine ring in each molecule are 58.66 (9)° and 57.88 (8)° but these are in the opposite sense with respect to the S—C bond of methylthio substituent. In the crystal structure, no hydrogen bonds are found, and the crystal packing is stabilized by van der Waals forces and one very weak C—H···π(arene) interaction with H7A···Cg = 2.91 Å, C7···Cg = 3.373 (3) Å and C7—H7A···Cg = 128° (Fig. 2). Cg is the centroid defined by the atoms of the pyrimidine ring.
Pyrimidine derivatives have been studied because of their biological properties (see Koppel et al., 1961; Zhang & Wang, 1988; Nezu & Miyazaki, 1996).
Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Bruker, 2001); program(s) used to refine structure: SHELXTL; molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXTL.
Fig. 1. Molecular structure of (I) showing 30% probability displacement ellipsoids. | |
Fig. 2. Partial packing plot of (I) with dashed lines indicating C—H···π) interactions. |
C13H14N2O2S | Z = 8 |
Mr = 262.32 | F(000) = 1104 |
Monoclinic, P21/c | Dx = 1.319 Mg m−3 |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 8.4346 (5) Å | µ = 0.24 mm−1 |
b = 35.193 (2) Å | T = 296 K |
c = 9.4327 (6) Å | Block, colorless |
β = 109.356 (1)° | 0.30 × 0.20 × 0.20 mm |
V = 2641.7 (3) Å3 |
Bruker SMART CCD diffractometer | 3710 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.062 |
Graphite monochromator | θmax = 27.0°, θmin = 1.2° |
φ and ω scans | h = −10→10 |
18638 measured reflections | k = −37→44 |
5743 independent reflections | l = −10→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.060 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.177 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0932P)2] where P = (Fo2 + 2Fc2)/3 |
5743 reflections | (Δ/σ)max < 0.001 |
331 parameters | Δρmax = 0.38 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
C13H14N2O2S | V = 2641.7 (3) Å3 |
Mr = 262.32 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.4346 (5) Å | µ = 0.24 mm−1 |
b = 35.193 (2) Å | T = 296 K |
c = 9.4327 (6) Å | 0.30 × 0.20 × 0.20 mm |
β = 109.356 (1)° |
Bruker SMART CCD diffractometer | 3710 reflections with I > 2σ(I) |
18638 measured reflections | Rint = 0.062 |
5743 independent reflections |
R[F2 > 2σ(F2)] = 0.060 | 0 restraints |
wR(F2) = 0.177 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.38 e Å−3 |
5743 reflections | Δρmin = −0.24 e Å−3 |
331 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.5206 (4) | 0.01414 (8) | 0.2874 (4) | 0.0781 (10) | |
H1A | 0.4782 | 0.0030 | 0.3605 | 0.117* | |
H1B | 0.5425 | −0.0055 | 0.2257 | 0.117* | |
H1C | 0.4389 | 0.0315 | 0.2255 | 0.117* | |
C2 | 0.6413 (3) | 0.07590 (7) | 0.4721 (3) | 0.0467 (6) | |
C3 | 0.4358 (3) | 0.10674 (7) | 0.5265 (3) | 0.0462 (6) | |
C4 | 0.5431 (3) | 0.13661 (6) | 0.5940 (3) | 0.0432 (6) | |
C5 | 0.7097 (3) | 0.13073 (7) | 0.6023 (3) | 0.0442 (6) | |
C6 | 0.1651 (4) | 0.07707 (8) | 0.4594 (4) | 0.0683 (8) | |
H6A | 0.1612 | 0.0741 | 0.3571 | 0.102* | |
H6B | 0.0537 | 0.0815 | 0.4618 | 0.102* | |
H6C | 0.2097 | 0.0544 | 0.5147 | 0.102* | |
C7 | 0.9994 (4) | 0.15082 (8) | 0.6860 (3) | 0.0660 (8) | |
H7A | 1.0327 | 0.1262 | 0.7293 | 0.099* | |
H7B | 1.0733 | 0.1698 | 0.7463 | 0.099* | |
H7C | 1.0053 | 0.1514 | 0.5861 | 0.099* | |
C8 | 0.4815 (3) | 0.17163 (6) | 0.6455 (3) | 0.0440 (6) | |
C9 | 0.3554 (3) | 0.19274 (7) | 0.5434 (3) | 0.0512 (6) | |
H9 | 0.3095 | 0.1844 | 0.4446 | 0.061* | |
C10 | 0.2978 (4) | 0.22587 (7) | 0.5873 (3) | 0.0600 (7) | |
H10 | 0.2150 | 0.2400 | 0.5172 | 0.072* | |
C11 | 0.3608 (4) | 0.23809 (7) | 0.7319 (3) | 0.0602 (8) | |
H11 | 0.3210 | 0.2604 | 0.7606 | 0.072* | |
C12 | 0.4838 (4) | 0.21730 (8) | 0.8360 (3) | 0.0617 (7) | |
H12 | 0.5259 | 0.2254 | 0.9353 | 0.074* | |
C13 | 0.5447 (3) | 0.18427 (7) | 0.7929 (3) | 0.0529 (7) | |
H13 | 0.6286 | 0.1705 | 0.8633 | 0.063* | |
C14 | 0.9765 (4) | 0.00837 (8) | −0.2144 (3) | 0.0736 (9) | |
H14A | 0.9293 | −0.0006 | −0.1408 | 0.110* | |
H14B | 1.0017 | −0.0129 | −0.2669 | 0.110* | |
H14C | 0.8972 | 0.0247 | −0.2846 | 0.110* | |
C15 | 1.0923 (3) | 0.07136 (7) | −0.0362 (3) | 0.0453 (6) | |
C16 | 0.8881 (3) | 0.10212 (6) | 0.0210 (3) | 0.0402 (5) | |
C17 | 0.9962 (3) | 0.13147 (6) | 0.0897 (2) | 0.0384 (5) | |
C18 | 1.1608 (3) | 0.12611 (7) | 0.0919 (3) | 0.0432 (6) | |
C19 | 0.6142 (3) | 0.07471 (8) | −0.0560 (3) | 0.0650 (8) | |
H19A | 0.6173 | 0.0715 | −0.1562 | 0.097* | |
H19B | 0.5021 | 0.0811 | −0.0603 | 0.097* | |
H19C | 0.6478 | 0.0515 | −0.0011 | 0.097* | |
C20 | 1.4415 (3) | 0.14925 (9) | 0.1545 (4) | 0.0789 (10) | |
H20A | 1.4914 | 0.1264 | 0.2057 | 0.118* | |
H20B | 1.5077 | 0.1708 | 0.2024 | 0.118* | |
H20C | 1.4371 | 0.1480 | 0.0516 | 0.118* | |
C21 | 0.9432 (3) | 0.16609 (6) | 0.1519 (2) | 0.0384 (5) | |
C22 | 0.8676 (3) | 0.16418 (7) | 0.2617 (3) | 0.0466 (6) | |
H22 | 0.8507 | 0.1407 | 0.2997 | 0.056* | |
C23 | 0.8170 (3) | 0.19721 (7) | 0.3150 (3) | 0.0535 (7) | |
H23 | 0.7682 | 0.1957 | 0.3900 | 0.064* | |
C24 | 0.8379 (3) | 0.23174 (7) | 0.2590 (3) | 0.0554 (7) | |
H24 | 0.8008 | 0.2536 | 0.2937 | 0.066* | |
C25 | 0.9141 (3) | 0.23431 (7) | 0.1506 (3) | 0.0564 (7) | |
H25 | 0.9305 | 0.2579 | 0.1134 | 0.068* | |
C26 | 0.9659 (3) | 0.20179 (7) | 0.0979 (3) | 0.0506 (6) | |
H26 | 1.0172 | 0.2037 | 0.0248 | 0.061* | |
N1 | 0.4813 (3) | 0.07636 (5) | 0.4644 (2) | 0.0476 (5) | |
N2 | 0.7612 (3) | 0.10095 (6) | 0.5409 (2) | 0.0478 (5) | |
N3 | 0.9330 (2) | 0.07204 (5) | −0.0438 (2) | 0.0434 (5) | |
N4 | 1.2120 (3) | 0.09663 (6) | 0.0305 (2) | 0.0473 (5) | |
O1 | 0.2716 (2) | 0.10897 (5) | 0.5267 (2) | 0.0556 (5) | |
O2 | 0.8297 (2) | 0.15852 (4) | 0.68017 (19) | 0.0481 (4) | |
O3 | 0.7269 (2) | 0.10457 (4) | 0.0178 (2) | 0.0515 (5) | |
O4 | 1.2743 (2) | 0.15312 (5) | 0.1602 (2) | 0.0578 (5) | |
S1 | 0.70988 (10) | 0.03907 (2) | 0.38070 (9) | 0.0662 (3) | |
S2 | 1.16403 (10) | 0.03415 (2) | −0.12325 (9) | 0.0657 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.082 (2) | 0.066 (2) | 0.089 (2) | −0.0102 (17) | 0.0320 (19) | −0.0344 (17) |
C2 | 0.0509 (15) | 0.0433 (14) | 0.0479 (14) | 0.0042 (12) | 0.0190 (12) | −0.0002 (11) |
C3 | 0.0505 (15) | 0.0394 (14) | 0.0518 (14) | 0.0011 (12) | 0.0211 (12) | 0.0007 (11) |
C4 | 0.0492 (15) | 0.0383 (13) | 0.0452 (13) | 0.0035 (11) | 0.0197 (12) | 0.0004 (10) |
C5 | 0.0517 (15) | 0.0397 (14) | 0.0446 (13) | 0.0019 (12) | 0.0205 (12) | 0.0020 (10) |
C6 | 0.0492 (17) | 0.0609 (19) | 0.095 (2) | −0.0102 (14) | 0.0240 (17) | −0.0060 (16) |
C7 | 0.066 (2) | 0.0651 (19) | 0.0609 (18) | −0.0120 (15) | 0.0129 (15) | −0.0033 (14) |
C8 | 0.0504 (15) | 0.0369 (13) | 0.0489 (14) | −0.0032 (11) | 0.0222 (12) | 0.0008 (10) |
C9 | 0.0633 (17) | 0.0485 (15) | 0.0421 (14) | 0.0081 (13) | 0.0179 (13) | −0.0008 (11) |
C10 | 0.0705 (19) | 0.0507 (17) | 0.0607 (17) | 0.0192 (14) | 0.0242 (15) | 0.0048 (13) |
C11 | 0.071 (2) | 0.0450 (16) | 0.073 (2) | 0.0071 (14) | 0.0353 (17) | −0.0080 (14) |
C12 | 0.0702 (19) | 0.0600 (18) | 0.0557 (17) | −0.0004 (16) | 0.0221 (15) | −0.0166 (14) |
C13 | 0.0517 (15) | 0.0550 (16) | 0.0488 (15) | 0.0045 (13) | 0.0125 (13) | 0.0004 (12) |
C14 | 0.084 (2) | 0.063 (2) | 0.074 (2) | 0.0017 (17) | 0.0248 (18) | −0.0201 (15) |
C15 | 0.0503 (15) | 0.0411 (14) | 0.0475 (14) | 0.0045 (12) | 0.0203 (12) | 0.0009 (11) |
C16 | 0.0379 (13) | 0.0365 (13) | 0.0462 (13) | 0.0027 (10) | 0.0141 (11) | 0.0041 (10) |
C17 | 0.0391 (13) | 0.0379 (13) | 0.0399 (12) | 0.0017 (10) | 0.0152 (11) | −0.0004 (10) |
C18 | 0.0404 (14) | 0.0470 (14) | 0.0436 (13) | −0.0018 (11) | 0.0156 (11) | −0.0013 (11) |
C19 | 0.0462 (16) | 0.0584 (18) | 0.087 (2) | −0.0138 (14) | 0.0181 (15) | −0.0114 (15) |
C20 | 0.0435 (17) | 0.085 (2) | 0.112 (3) | −0.0153 (16) | 0.0311 (18) | −0.0227 (19) |
C21 | 0.0311 (12) | 0.0418 (13) | 0.0382 (12) | −0.0020 (10) | 0.0061 (10) | −0.0048 (10) |
C22 | 0.0455 (15) | 0.0495 (15) | 0.0462 (14) | −0.0041 (12) | 0.0169 (12) | 0.0004 (11) |
C23 | 0.0527 (16) | 0.0595 (17) | 0.0529 (15) | −0.0054 (13) | 0.0237 (13) | −0.0145 (13) |
C24 | 0.0505 (16) | 0.0483 (16) | 0.0625 (17) | 0.0052 (13) | 0.0120 (14) | −0.0179 (13) |
C25 | 0.0703 (19) | 0.0385 (15) | 0.0580 (16) | 0.0031 (13) | 0.0178 (15) | −0.0024 (12) |
C26 | 0.0593 (16) | 0.0464 (15) | 0.0494 (15) | −0.0027 (13) | 0.0225 (13) | 0.0008 (11) |
N1 | 0.0507 (13) | 0.0362 (11) | 0.0597 (13) | 0.0018 (10) | 0.0235 (11) | −0.0034 (9) |
N2 | 0.0481 (12) | 0.0454 (12) | 0.0516 (12) | 0.0038 (10) | 0.0186 (10) | −0.0031 (10) |
N3 | 0.0457 (12) | 0.0346 (11) | 0.0512 (12) | 0.0005 (9) | 0.0178 (10) | −0.0027 (9) |
N4 | 0.0427 (12) | 0.0467 (12) | 0.0561 (13) | 0.0002 (10) | 0.0211 (10) | −0.0064 (10) |
O1 | 0.0406 (10) | 0.0425 (10) | 0.0877 (14) | −0.0076 (8) | 0.0268 (10) | −0.0151 (9) |
O2 | 0.0437 (10) | 0.0442 (10) | 0.0645 (11) | 0.0033 (8) | 0.0289 (9) | 0.0021 (8) |
O3 | 0.0379 (9) | 0.0402 (10) | 0.0764 (12) | −0.0042 (8) | 0.0190 (9) | −0.0122 (8) |
O4 | 0.0366 (10) | 0.0630 (12) | 0.0756 (13) | −0.0105 (9) | 0.0211 (9) | −0.0242 (9) |
S1 | 0.0610 (5) | 0.0613 (5) | 0.0785 (5) | 0.0068 (4) | 0.0261 (4) | −0.0220 (4) |
S2 | 0.0670 (5) | 0.0558 (5) | 0.0830 (5) | 0.0042 (4) | 0.0364 (4) | −0.0186 (4) |
C1—S1 | 1.778 (3) | C14—S2 | 1.779 (3) |
C1—H1A | 0.9600 | C14—H14A | 0.9600 |
C1—H1B | 0.9600 | C14—H14B | 0.9600 |
C1—H1C | 0.9600 | C14—H14C | 0.9600 |
C2—N1 | 1.328 (3) | C15—N3 | 1.322 (3) |
C2—N2 | 1.336 (3) | C15—N4 | 1.336 (3) |
C2—S1 | 1.757 (2) | C15—S2 | 1.756 (2) |
C3—N1 | 1.335 (3) | C16—N3 | 1.338 (3) |
C3—O1 | 1.387 (3) | C16—O3 | 1.353 (3) |
C3—C4 | 1.395 (3) | C16—C17 | 1.388 (3) |
C4—C5 | 1.397 (3) | C17—C18 | 1.394 (3) |
C4—C8 | 1.481 (3) | C17—C21 | 1.484 (3) |
C5—N2 | 1.338 (3) | C18—N4 | 1.328 (3) |
C5—O2 | 1.425 (3) | C18—O4 | 1.352 (3) |
C6—O1 | 1.447 (3) | C19—O3 | 1.433 (3) |
C6—H6A | 0.9600 | C19—H19A | 0.9600 |
C6—H6B | 0.9600 | C19—H19B | 0.9600 |
C6—H6C | 0.9600 | C19—H19C | 0.9600 |
C7—O2 | 1.439 (3) | C20—O4 | 1.435 (3) |
C7—H7A | 0.9600 | C20—H20A | 0.9600 |
C7—H7B | 0.9600 | C20—H20B | 0.9600 |
C7—H7C | 0.9600 | C20—H20C | 0.9600 |
C8—C13 | 1.387 (3) | C21—C22 | 1.386 (3) |
C8—C9 | 1.390 (3) | C21—C26 | 1.392 (3) |
C9—C10 | 1.378 (3) | C22—C23 | 1.389 (3) |
C9—H9 | 0.9300 | C22—H22 | 0.9300 |
C10—C11 | 1.360 (4) | C23—C24 | 1.360 (3) |
C10—H10 | 0.9300 | C23—H23 | 0.9300 |
C11—C12 | 1.379 (4) | C24—C25 | 1.379 (4) |
C11—H11 | 0.9300 | C24—H24 | 0.9300 |
C12—C13 | 1.385 (3) | C25—C26 | 1.376 (3) |
C12—H12 | 0.9300 | C25—H25 | 0.9300 |
C13—H13 | 0.9300 | C26—H26 | 0.9300 |
S1—C1—H1A | 109.5 | H14B—C14—H14C | 109.5 |
S1—C1—H1B | 109.5 | N3—C15—N4 | 127.6 (2) |
H1A—C1—H1B | 109.5 | N3—C15—S2 | 119.31 (19) |
S1—C1—H1C | 109.5 | N4—C15—S2 | 113.13 (17) |
H1A—C1—H1C | 109.5 | N3—C16—O3 | 118.3 (2) |
H1B—C1—H1C | 109.5 | N3—C16—C17 | 124.1 (2) |
N1—C2—N2 | 127.6 (2) | O3—C16—C17 | 117.5 (2) |
N1—C2—S1 | 118.43 (19) | C16—C17—C18 | 113.7 (2) |
N2—C2—S1 | 113.94 (18) | C16—C17—C21 | 124.0 (2) |
N1—C3—O1 | 118.6 (2) | C18—C17—C21 | 122.2 (2) |
N1—C3—C4 | 124.5 (2) | N4—C18—O4 | 118.4 (2) |
O1—C3—C4 | 117.0 (2) | N4—C18—C17 | 124.4 (2) |
C3—C4—C5 | 113.7 (2) | O4—C18—C17 | 117.2 (2) |
C3—C4—C8 | 122.1 (2) | O3—C19—H19A | 109.5 |
C5—C4—C8 | 124.1 (2) | O3—C19—H19B | 109.5 |
N2—C5—C4 | 123.9 (2) | H19A—C19—H19B | 109.5 |
N2—C5—O2 | 118.9 (2) | O3—C19—H19C | 109.5 |
C4—C5—O2 | 117.2 (2) | H19A—C19—H19C | 109.5 |
O1—C6—H6A | 109.5 | H19B—C19—H19C | 109.5 |
O1—C6—H6B | 109.5 | O4—C20—H20A | 109.5 |
H6A—C6—H6B | 109.5 | O4—C20—H20B | 109.5 |
O1—C6—H6C | 109.5 | H20A—C20—H20B | 109.5 |
H6A—C6—H6C | 109.5 | O4—C20—H20C | 109.5 |
H6B—C6—H6C | 109.5 | H20A—C20—H20C | 109.5 |
O2—C7—H7A | 109.5 | H20B—C20—H20C | 109.5 |
O2—C7—H7B | 109.5 | C22—C21—C26 | 118.0 (2) |
H7A—C7—H7B | 109.5 | C22—C21—C17 | 121.9 (2) |
O2—C7—H7C | 109.5 | C26—C21—C17 | 120.0 (2) |
H7A—C7—H7C | 109.5 | C21—C22—C23 | 120.2 (2) |
H7B—C7—H7C | 109.5 | C21—C22—H22 | 119.9 |
C13—C8—C9 | 118.4 (2) | C23—C22—H22 | 119.9 |
C13—C8—C4 | 122.4 (2) | C24—C23—C22 | 120.8 (2) |
C9—C8—C4 | 119.2 (2) | C24—C23—H23 | 119.6 |
C10—C9—C8 | 120.6 (2) | C22—C23—H23 | 119.6 |
C10—C9—H9 | 119.7 | C23—C24—C25 | 119.9 (2) |
C8—C9—H9 | 119.7 | C23—C24—H24 | 120.0 |
C11—C10—C9 | 120.6 (3) | C25—C24—H24 | 120.0 |
C11—C10—H10 | 119.7 | C26—C25—C24 | 119.7 (2) |
C9—C10—H10 | 119.7 | C26—C25—H25 | 120.2 |
C10—C11—C12 | 119.9 (2) | C24—C25—H25 | 120.2 |
C10—C11—H11 | 120.1 | C25—C26—C21 | 121.3 (2) |
C12—C11—H11 | 120.1 | C25—C26—H26 | 119.3 |
C11—C12—C13 | 120.1 (3) | C21—C26—H26 | 119.3 |
C11—C12—H12 | 120.0 | C2—N1—C3 | 114.9 (2) |
C13—C12—H12 | 120.0 | C2—N2—C5 | 115.1 (2) |
C12—C13—C8 | 120.4 (2) | C15—N3—C16 | 115.2 (2) |
C12—C13—H13 | 119.8 | C18—N4—C15 | 114.9 (2) |
C8—C13—H13 | 119.8 | C3—O1—C6 | 115.49 (19) |
S2—C14—H14A | 109.5 | C5—O2—C7 | 114.72 (18) |
S2—C14—H14B | 109.5 | C16—O3—C19 | 117.65 (19) |
H14A—C14—H14B | 109.5 | C18—O4—C20 | 117.71 (19) |
S2—C14—H14C | 109.5 | C2—S1—C1 | 102.66 (13) |
H14A—C14—H14C | 109.5 | C15—S2—C14 | 102.54 (13) |
N1—C3—C4—C5 | −4.9 (4) | C21—C22—C23—C24 | 1.1 (4) |
O1—C3—C4—C5 | 174.3 (2) | C22—C23—C24—C25 | −1.7 (4) |
N1—C3—C4—C8 | 172.8 (2) | C23—C24—C25—C26 | 1.2 (4) |
O1—C3—C4—C8 | −8.0 (3) | C24—C25—C26—C21 | −0.1 (4) |
C3—C4—C5—N2 | 5.2 (3) | C22—C21—C26—C25 | −0.5 (4) |
C8—C4—C5—N2 | −172.4 (2) | C17—C21—C26—C25 | 178.3 (2) |
C3—C4—C5—O2 | −175.19 (19) | N2—C2—N1—C3 | 3.9 (4) |
C8—C4—C5—O2 | 7.2 (3) | S1—C2—N1—C3 | −175.03 (18) |
C3—C4—C8—C13 | 123.0 (3) | O1—C3—N1—C2 | −178.4 (2) |
C5—C4—C8—C13 | −59.5 (3) | C4—C3—N1—C2 | 0.7 (4) |
C3—C4—C8—C9 | −56.8 (3) | N1—C2—N2—C5 | −3.5 (4) |
C5—C4—C8—C9 | 120.7 (3) | S1—C2—N2—C5 | 175.44 (17) |
C13—C8—C9—C10 | 1.5 (4) | C4—C5—N2—C2 | −1.5 (3) |
C4—C8—C9—C10 | −178.7 (2) | O2—C5—N2—C2 | 178.9 (2) |
C8—C9—C10—C11 | −1.3 (4) | N4—C15—N3—C16 | 1.4 (4) |
C9—C10—C11—C12 | 0.2 (4) | S2—C15—N3—C16 | −177.72 (17) |
C10—C11—C12—C13 | 0.9 (4) | O3—C16—N3—C15 | −179.8 (2) |
C11—C12—C13—C8 | −0.7 (4) | C17—C16—N3—C15 | 1.3 (3) |
C9—C8—C13—C12 | −0.4 (4) | O4—C18—N4—C15 | −179.4 (2) |
C4—C8—C13—C12 | 179.7 (2) | C17—C18—N4—C15 | 0.0 (4) |
N3—C16—C17—C18 | −2.9 (3) | N3—C15—N4—C18 | −2.0 (4) |
O3—C16—C17—C18 | 178.2 (2) | S2—C15—N4—C18 | 177.13 (17) |
N3—C16—C17—C21 | 175.5 (2) | N1—C3—O1—C6 | 0.8 (3) |
O3—C16—C17—C21 | −3.5 (3) | C4—C3—O1—C6 | −178.4 (2) |
C16—C17—C18—N4 | 2.2 (3) | N2—C5—O2—C7 | −0.8 (3) |
C21—C17—C18—N4 | −176.2 (2) | C4—C5—O2—C7 | 179.6 (2) |
C16—C17—C18—O4 | −178.4 (2) | N3—C16—O3—C19 | −0.3 (3) |
C21—C17—C18—O4 | 3.2 (3) | C17—C16—O3—C19 | 178.7 (2) |
C16—C17—C21—C22 | 57.7 (3) | N4—C18—O4—C20 | 3.5 (3) |
C18—C17—C21—C22 | −124.1 (3) | C17—C18—O4—C20 | −175.9 (2) |
C16—C17—C21—C26 | −121.0 (3) | N1—C2—S1—C1 | 4.6 (2) |
C18—C17—C21—C26 | 57.2 (3) | N2—C2—S1—C1 | −174.5 (2) |
C26—C21—C22—C23 | −0.1 (3) | N3—C15—S2—C14 | 4.3 (2) |
C17—C21—C22—C23 | −178.8 (2) | N4—C15—S2—C14 | −174.90 (19) |
Experimental details
Crystal data | |
Chemical formula | C13H14N2O2S |
Mr | 262.32 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 8.4346 (5), 35.193 (2), 9.4327 (6) |
β (°) | 109.356 (1) |
V (Å3) | 2641.7 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.24 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART CCD |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18638, 5743, 3710 |
Rint | 0.062 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.060, 0.177, 1.01 |
No. of reflections | 5743 |
No. of parameters | 331 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.38, −0.24 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SAINT, SHELXTL (Bruker, 2001), SHELXTL, PLATON (Spek, 2003).
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Pyrimidine derivates are important intermediates for some pesticides. Many new pyrimidine derivates have been intensively studied due to their biological properties (Koppel et al., 1961; Zhang et al., 1988; Nezu et al., 1996). We report here the synthesis and crystal structure of the title compound (Fig. 1).
There are two independent molecules in the asymmetric unit of the title structure (Fig. 1). The molecules differ from each other in that the dihedral angles between the phenyl ring and pyrimidine ring in each molecule are 58.66 (9)° and 57.88 (8)° but these are in the opposite sense with respect to the S—C bond of methylthio substituent. In the crystal structure, no hydrogen bonds are found, and the crystal packing is stabilized by van der Waals forces and one very weak C—H···π(arene) interaction with H7A···Cg = 2.91 Å, C7···Cg = 3.373 (3) Å and C7—H7A···Cg = 128° (Fig. 2). Cg is the centroid defined by the atoms of the pyrimidine ring.