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metal-organic compounds
The Cd atom in the title polymeric structure, [Cd(C7H7O3S)2(C13H14N2)2]n, exists in a slightly distorted trans-N2O4Cd octahedral geometry; the Cd atom lies on a special position of 2 site symmetry. The p-toluenesulfonate ligand coordinates in a monodentate mode to the Cd atom, and the 1,3-di-4-pyridylpropane ligand links adjacent Cd atoms into a layer structure.
Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536806027231/lh2134sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536806027231/lh2134Isup2.hkl |
CCDC reference: 618281
Key indicators
- Single-crystal X-ray study
- T = 291 K
- Mean (C-C) = 0.004 Å
- R factor = 0.034
- wR factor = 0.097
- Data-to-parameter ratio = 18.4
checkCIF/PLATON results
No syntax errors found
Alert level A PLAT220_ALERT_2_A Large Non-Solvent C Ueq(max)/Ueq(min) ... 4.52 Ratio
Alert level B PLAT222_ALERT_3_B Large Non-Solvent H Ueq(max)/Ueq(min) ... 5.00 Ratio PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for S1
Alert level C PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT213_ALERT_2_C Atom O3 has ADP max/min Ratio ............. 3.20 prola PLAT220_ALERT_2_C Large Non-Solvent O Ueq(max)/Ueq(min) ... 2.63 Ratio PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for O1 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for Cd1 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C4
Alert level G FORMU01_ALERT_1_G There is a discrepancy between the atom counts in the _chemical_formula_sum and _chemical_formula_moiety. This is usually due to the moiety formula being in the wrong format. Atom count from _chemical_formula_sum: C40 H42 Cd1 N4 O6 S2 Atom count from _chemical_formula_moiety:C2600 H2800 Cd200 N400 O600
1 ALERT level A = In general: serious problem 2 ALERT level B = Potentially serious problem 6 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 7 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Computing details top
Data collection: SMART (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97.
Crystal data top
[Cd(C7H7O3S)2(C13H14N2)2] | F(000) = 1752 |
Mr = 851.30 | Dx = 1.466 Mg m−3 |
Orthorhombic, Pnna | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2a 2bc | Cell parameters from 7107 reflections |
a = 24.101 (2) Å | θ = 2.4–25.8° |
b = 17.286 (1) Å | µ = 0.73 mm−1 |
c = 9.2556 (6) Å | T = 291 K |
V = 3856.0 (5) Å3 | Block, colourless |
Z = 4 | 0.31 × 0.22 × 0.16 mm |
Data collection top
Bruker APEXII area-detector diffractometer | 4435 independent reflections |
Radiation source: fine-focus sealed tube | 3453 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
φ and ω scans | θmax = 27.5°, θmin = 2.4° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −31→31 |
Tmin = 0.790, Tmax = 0.892 | k = −21→22 |
28015 measured reflections | l = −12→12 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0459P)2 + 3.6136P] where P = (Fo2 + 2Fc2)/3 |
4435 reflections | (Δ/σ)max = 0.001 |
241 parameters | Δρmax = 0.98 e Å−3 |
0 restraints | Δρmin = −0.75 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.40588 (1) | 0.7500 | 0.7500 | 0.0269 (1) | |
S1 | 0.38945 (4) | 0.62451 (5) | 1.06925 (8) | 0.0545 (2) | |
O1 | 0.4061 (1) | 0.6596 (1) | 0.9354 (3) | 0.058 (1) | |
O2 | 0.3334 (2) | 0.6535 (2) | 1.1083 (4) | 0.099 (1) | |
O3 | 0.4284 (2) | 0.6281 (2) | 1.1782 (5) | 0.152 (2) | |
N1 | 0.3339 (1) | 0.6790 (1) | 0.6425 (2) | 0.035 (1) | |
N2 | −0.0234 (1) | 0.6802 (1) | 0.3631 (2) | 0.032 (1) | |
C1 | 0.3800 (1) | 0.5249 (2) | 1.0308 (3) | 0.039 (1) | |
C2 | 0.4217 (1) | 0.4813 (2) | 0.9677 (3) | 0.050 (1) | |
C3 | 0.4152 (2) | 0.4021 (2) | 0.9516 (4) | 0.063 (1) | |
C4 | 0.3673 (2) | 0.3654 (2) | 0.9958 (4) | 0.072 (1) | |
C5 | 0.3256 (2) | 0.4094 (2) | 1.0543 (5) | 0.070 (1) | |
C6 | 0.3315 (1) | 0.4886 (2) | 1.0724 (4) | 0.054 (1) | |
C7 | 0.3609 (3) | 0.2787 (3) | 0.9809 (7) | 0.140 (3) | |
C8 | 0.2957 (1) | 0.6500 (2) | 0.7328 (3) | 0.039 (1) | |
C9 | 0.2472 (1) | 0.6153 (2) | 0.6861 (3) | 0.038 (1) | |
C10 | 0.2360 (1) | 0.6096 (2) | 0.5397 (3) | 0.031 (1) | |
C11 | 0.2759 (1) | 0.6388 (2) | 0.4465 (3) | 0.038 (1) | |
C12 | 0.3235 (1) | 0.6727 (2) | 0.5004 (3) | 0.038 (1) | |
C13 | 0.1830 (1) | 0.5738 (2) | 0.4834 (3) | 0.035 (1) | |
C14 | 0.1434 (1) | 0.5447 (2) | 0.5972 (3) | 0.036 (1) | |
C15 | 0.0898 (1) | 0.5101 (2) | 0.5362 (3) | 0.039 (1) | |
C16 | 0.0511 (1) | 0.5707 (2) | 0.4757 (3) | 0.031 (1) | |
C17 | 0.0468 (1) | 0.5843 (2) | 0.3280 (3) | 0.039 (1) | |
C18 | 0.0098 (1) | 0.6383 (2) | 0.2775 (3) | 0.038 (1) | |
C19 | −0.0185 (1) | 0.6688 (2) | 0.5059 (3) | 0.035 (1) | |
C20 | 0.0174 (1) | 0.6152 (2) | 0.5646 (3) | 0.0376 (1) | |
H2 | 0.4541 | 0.5052 | 0.9362 | 0.060* | |
H3 | 0.4436 | 0.3732 | 0.9103 | 0.075* | |
H5 | 0.2927 | 0.3856 | 1.0824 | 0.084* | |
H6 | 0.3028 | 0.5173 | 1.1126 | 0.065* | |
H7a | 0.3239 | 0.2668 | 0.9501 | 0.210* | |
H7b | 0.3680 | 0.2544 | 1.0724 | 0.210* | |
H7c | 0.3869 | 0.2597 | 0.9107 | 0.210* | |
H8 | 0.3021 | 0.6534 | 0.8316 | 0.047* | |
H9 | 0.2221 | 0.5958 | 0.7531 | 0.046* | |
H11 | 0.2706 | 0.6355 | 0.3472 | 0.045* | |
H12 | 0.3495 | 0.6919 | 0.4354 | 0.045* | |
H13a | 0.1639 | 0.6120 | 0.4249 | 0.042* | |
H13b | 0.1927 | 0.5310 | 0.4207 | 0.042* | |
H14a | 0.1339 | 0.5872 | 0.6609 | 0.043* | |
H14b | 0.1621 | 0.5057 | 0.6546 | 0.043* | |
H15a | 0.0991 | 0.4735 | 0.4605 | 0.046* | |
H15b | 0.0709 | 0.4819 | 0.6123 | 0.046* | |
H17 | 0.0689 | 0.5569 | 0.2636 | 0.047* | |
H18 | 0.0077 | 0.6462 | 0.1783 | 0.046* | |
H19 | −0.0403 | 0.6983 | 0.5679 | 0.042* | |
H20 | 0.0190 | 0.6088 | 0.6643 | 0.045* |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.0198 (1) | 0.0276 (1) | 0.0334 (2) | 0.000 | 0.000 | −0.00170 (1) |
S1 | 0.0863 (6) | 0.0411 (4) | 0.0360 (4) | −0.0094 (4) | −0.0087 (4) | 0.0077 (3) |
O1 | 0.062 (1) | 0.051 (1) | 0.060 (1) | −0.006 (1) | 0.007 (1) | 0.024 (1) |
O2 | 0.128 (3) | 0.058 (2) | 0.110 (2) | 0.011 (2) | 0.071 (2) | −0.001 (2) |
O3 | 0.256 (5) | 0.071 (2) | 0.129 (3) | −0.045 (3) | −0.142 (4) | 0.020 (2) |
N1 | 0.027 (1) | 0.036 (1) | 0.040 (1) | −0.005 (1) | 0.000 (1) | −0.004 (1) |
N2 | 0.026 (1) | 0.037 (1) | 0.034 (1) | 0.004 (1) | 0.001 (1) | 0.002 (1) |
C1 | 0.047 (2) | 0.041 (2) | 0.030 (1) | −0.001 (1) | −0.004 (1) | 0.008 (1) |
C2 | 0.052 (2) | 0.063 (2) | 0.034 (2) | 0.001 (2) | 0.000 (1) | 0.005 (1) |
C3 | 0.092 (3) | 0.059 (2) | 0.037 (2) | 0.025 (2) | −0.008 (2) | −0.004 (2) |
C4 | 0.115 (4) | 0.045 (2) | 0.056 (2) | −0.005 (2) | −0.018 (2) | 0.002 (2) |
C5 | 0.072 (2) | 0.062 (2) | 0.077 (3) | −0.025 (2) | −0.010 (2) | 0.014 (2) |
C6 | 0.048 (2) | 0.057 (2) | 0.057 (2) | −0.002 (2) | 0.003 (2) | 0.008 (2) |
C7 | 0.242 (8) | 0.046 (3) | 0.131 (5) | −0.013 (4) | −0.034 (5) | −0.007 (3) |
C8 | 0.032 (1) | 0.050 (2) | 0.035 (1) | −0.008 (1) | −0.003 (1) | 0.000 (1) |
C9 | 0.031 (1) | 0.050 (2) | 0.035 (1) | −0.009 (1) | 0.000 (1) | 0.002 (1) |
C10 | 0.025 (1) | 0.030 (1) | 0.039 (1) | 0.000 (1) | −0.002 (1) | −0.002 (1) |
C11 | 0.037 (1) | 0.044 (2) | 0.032 (1) | −0.004 (1) | 0.000 (1) | −0.003 (1) |
C12 | 0.032 (1) | 0.042 (2) | 0.039 (1) | −0.006 (1) | 0.006 (1) | −0.005 (1) |
C13 | 0.028 (1) | 0.037 (2) | 0.040 (1) | −0.004 (1) | −0.006 (1) | −0.002 (1) |
C14 | 0.025 (1) | 0.038 (2) | 0.045 (2) | −0.002 (1) | −0.009 (1) | 0.008 (1) |
C15 | 0.027 (1) | 0.035 (1) | 0.054 (2) | −0.004 (1) | −0.009 (1) | 0.008 (1) |
C16 | 0.020 (1) | 0.033 (1) | 0.040 (1) | −0.003 (1) | −0.005 (1) | 0.004 (1) |
C17 | 0.032 (1) | 0.050 (2) | 0.037 (1) | 0.012 (1) | 0.001 (1) | −0.006 (1) |
C18 | 0.035 (1) | 0.051 (2) | 0.028 (1) | 0.010 (1) | 0.002 (1) | 0.002 (1) |
C19 | 0.030 (1) | 0.045 (2) | 0.031 (1) | 0.005 (1) | 0.002 (1) | −0.005 (1) |
C20 | 0.034 (1) | 0.051 (2) | 0.028 (1) | 0.000 (1) | −0.004 (1) | 0.002 (1) |
Geometric parameters (Å, º) top
Cd1—O1 | 2.321 (2) | C14—C15 | 1.531 (3) |
Cd1—O1i | 2.321 (2) | C15—C16 | 1.511 (4) |
Cd1—N1 | 2.347 (2) | C16—C20 | 1.388 (4) |
Cd1—N1i | 2.347 (2) | C16—C17 | 1.391 (4) |
Cd1—N2ii | 2.337 (2) | C17—C18 | 1.372 (4) |
Cd1—N2iii | 2.337 (2) | C19—C20 | 1.380 (4) |
S1—O3 | 1.380 (3) | C2—H2 | 0.93 |
S1—O1 | 1.436 (2) | C3—H3 | 0.93 |
S1—O2 | 1.485 (3) | C5—H5 | 0.93 |
S1—C1 | 1.773 (3) | C6—H6 | 0.93 |
N1—C8 | 1.341 (3) | C7—H7a | 0.96 |
N1—C12 | 1.343 (3) | C7—H7b | 0.96 |
N2—C19 | 1.341 (3) | C7—H7C | 0.96 |
N2—C18 | 1.338 (3) | C8—H8 | 0.93 |
C1—C6 | 1.380 (4) | C9—H9 | 0.93 |
C1—C2 | 1.387 (4) | C11—H11 | 0.93 |
C2—C3 | 1.386 (5) | C12—H12 | 0.93 |
C3—C4 | 1.378 (6) | C13—H13a | 0.97 |
C4—C5 | 1.372 (6) | C13—H13b | 0.97 |
C4—C7 | 1.514 (6) | C14—H14a | 0.97 |
C5—C6 | 1.387 (5) | C14—H14b | 0.97 |
C8—C9 | 1.382 (4) | C15—H15a | 0.97 |
C9—C10 | 1.386 (4) | C15—H15b | 0.97 |
C10—C11 | 1.387 (4) | C17—H17 | 0.93 |
C10—C13 | 1.511 (3) | C18—H18 | 0.93 |
C11—C12 | 1.382 (4) | C19—H19 | 0.93 |
C13—C14 | 1.508 (4) | C20—H20 | 0.93 |
O1—Cd1—O1i | 179.7 (1) | C17—C16—C15 | 121.8 (2) |
O1—Cd1—N1 | 87.9 (1) | C18—C17—C16 | 119.9 (2) |
O1—Cd1—N1i | 92.3 (1) | N2—C18—C17 | 123.7 (2) |
O1—Cd1—N2ii | 89.0 (1) | N2—C19—C20 | 122.7 (2) |
O1—Cd1—N2iii | 90.9 (1) | C19—C20—C16 | 120.4 (2) |
O1i—Cd1—N1 | 92.3 (1) | C1—C2—H2 | 120.0 |
O1i—Cd1—N1i | 87.9 (1) | C3—C2—H2 | 120.0 |
O1i—Cd1—N2ii | 90.9 (1) | C4—C3—H3 | 119.4 |
O1i—Cd1—N2iii | 89.0 (1) | C2—C3—H3 | 119.4 |
N1—Cd1—N1i | 84.7 (1) | C4—C5—H5 | 119.4 |
N1—Cd1—N2ii | 94.6 (1) | C6—C5—H5 | 119.4 |
N1—Cd1—N2iii | 178.5 (1) | C1—C6—H6 | 119.9 |
N1i—Cd1—N2ii | 178.5 (1) | C5—C6—H6 | 119.9 |
N1i—Cd1—N2iii | 94.6 (1) | C4—C7—H7a | 109.5 |
N2ii—Cd1—N2iii | 86.3 (1) | C4—C7—H7b | 109.5 |
O3—S1—O1 | 114.9 (3) | H7a—C7—H7b | 109.5 |
O3—S1—O2 | 115.2 (3) | C4—C7—H7C | 109.5 |
O1—S1—O2 | 108.8 (2) | H7a—C7—H7C | 109.5 |
O3—S1—C1 | 106.2 (2) | H7b—C7—H7C | 109.5 |
O1—S1—C1 | 105.8 (1) | N1—C8—H8 | 118.4 |
O2—S1—C1 | 105.0 (2) | C9—C8—H8 | 118.4 |
S1—O1—Cd1 | 157.1 (2) | C8—C9—H9 | 119.9 |
C8—N1—C12 | 116.9 (2) | C10—C9—H9 | 119.9 |
C8—N1—Cd1 | 116.0 (2) | C12—C11—H11 | 119.8 |
C12—N1—Cd1 | 126.5 (2) | C10—C11—H11 | 119.8 |
C19—N2—C18 | 116.9 (2) | N1—C12—H12 | 118.6 |
C19—N2—Cd1iv | 125.5 (2) | C11—C12—H12 | 118.6 |
C18—N2—Cd1iv | 116.8 (2) | C14—C13—H13a | 108.4 |
C6—C1—C2 | 118.9 (3) | C10—C13—H13a | 108.4 |
C6—C1—S1 | 119.7 (2) | C14—C13—H13b | 108.4 |
C2—C1—S1 | 121.3 (2) | C10—C13—H13b | 108.4 |
C1—C2—C3 | 120.0 (3) | H13a—C13—H13b | 107.5 |
C4—C3—C2 | 121.2 (4) | C13—C14—H14a | 108.7 |
C5—C4—C3 | 118.4 (4) | C15—C14—H14a | 108.7 |
C5—C4—C7 | 120.7 (5) | C13—C14—H14b | 108.7 |
C3—C4—C7 | 120.9 (5) | C15—C14—H14b | 108.7 |
C4—C5—C6 | 121.3 (4) | H14a—C14—H14b | 107.6 |
C1—C6—C5 | 120.2 (3) | C16—C15—H15a | 109.1 |
N1—C8—C9 | 123.2 (2) | C14—C15—H15a | 109.1 |
C8—C9—C10 | 120.1 (2) | C16—C15—H15b | 109.1 |
C9—C10—C11 | 116.5 (2) | C14—C15—H15b | 109.1 |
C9—C10—C13 | 122.1 (2) | H15a—C15—H15b | 107.8 |
C11—C10—C13 | 121.4 (2) | C18—C17—H17 | 120.1 |
C12—C11—C10 | 120.4 (2) | C16—C17—H17 | 120.1 |
N1—C12—C11 | 122.8 (2) | N2—C18—H18 | 118.2 |
C14—C13—C10 | 115.5 (2) | C17—C18—H18 | 118.2 |
C13—C14—C15 | 114.0 (2) | N2—C19—H19 | 118.6 |
C16—C15—C14 | 112.7 (2) | C20—C19—H19 | 118.6 |
C20—C16—C17 | 116.5 (2) | C19—C20—H20 | 119.8 |
C20—C16—C15 | 121.7 (2) | C16—C20—H20 | 119.8 |
O3—S1—O1—Cd1 | −110.5 (4) | S1—C1—C6—C5 | −174.3 (3) |
O2—S1—O1—Cd1 | 20.3 (5) | C4—C5—C6—C1 | 0.3 (6) |
C1—S1—O1—Cd1 | 132.6 (4) | C12—N1—C8—C9 | −0.4 (4) |
N2iii—Cd1—O1—S1 | 93.3 (4) | Cd1—N1—C8—C9 | 171.7 (2) |
N2ii—Cd1—O1—S1 | 179.5 (4) | N1—C8—C9—C10 | −0.5 (5) |
N1—Cd1—O1—S1 | −85.9 (4) | C8—C9—C10—C11 | 1.2 (4) |
N1i—Cd1—O1—S1 | −1.3 (4) | C8—C9—C10—C13 | −178.6 (3) |
O1—Cd1—N1—C8 | 39.3 (2) | C9—C10—C11—C12 | −1.1 (4) |
O1i—Cd1—N1—C8 | −140.9 (2) | C13—C10—C11—C12 | 178.7 (3) |
N2ii—Cd1—N1—C8 | 128.1 (2) | C8—N1—C12—C11 | 0.6 (4) |
N1i—Cd1—N1—C8 | −53.2 (2) | Cd1—N1—C12—C11 | −170.6 (2) |
O1—Cd1—N1—C12 | −149.4 (2) | C10—C11—C12—N1 | 0.2 (4) |
O1i—Cd1—N1—C12 | 30.4 (2) | C9—C10—C13—C14 | −0.1 (4) |
N2ii—Cd1—N1—C12 | −60.7 (2) | C11—C10—C13—C14 | −179.9 (3) |
N1i—Cd1—N1—C12 | 118.0 (3) | C10—C13—C14—C15 | 179.0 (2) |
O3—S1—C1—C6 | 107.8 (4) | C13—C14—C15—C16 | −72.3 (3) |
O1—S1—C1—C6 | −129.7 (2) | C14—C15—C16—C20 | −79.4 (3) |
O2—S1—C1—C6 | −14.7 (3) | C14—C15—C16—C17 | 101.4 (3) |
O3—S1—C1—C2 | −68.1 (4) | C20—C16—C17—C18 | −1.3 (4) |
O1—S1—C1—C2 | 54.5 (3) | C15—C16—C17—C18 | 177.9 (3) |
O2—S1—C1—C2 | 169.5 (3) | C19—N2—C18—C17 | 1.5 (4) |
C6—C1—C2—C3 | −2.1 (4) | Cd1iv—N2—C18—C17 | −168.4 (2) |
S1—C1—C2—C3 | 173.8 (2) | C16—C17—C18—N2 | 0.1 (5) |
C1—C2—C3—C4 | 0.8 (5) | C18—N2—C19—C20 | −2.0 (4) |
C2—C3—C4—C5 | 1.1 (5) | Cd1iv—N2—C19—C20 | 167.0 (2) |
C2—C3—C4—C7 | −178.7 (4) | N2—C19—C20—C16 | 0.9 (4) |
C3—C4—C5—C6 | −1.6 (6) | C17—C16—C20—C19 | 0.8 (4) |
C7—C4—C5—C6 | 178.2 (4) | C15—C16—C20—C19 | −178.4 (2) |
C2—C1—C6—C5 | 1.6 (5) |
Symmetry codes: (i) x, −y+3/2, −z+3/2; (ii) x+1/2, y, −z+1; (iii) x+1/2, −y+3/2, z+1/2; (iv) x−1/2, y, −z+1. |
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