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N,N-Dimethyl­glycine, C4H9NO2, and its hemihydrate, C4H9NO2·0.5H2O, are discussed in order to follow the effect of the methyl­ation of the glycine amino group (and thus its ability to form several hydrogen bonds) on crystal structure, in particular on the possibility of the formation of hydrogen-bonded `head-to-tail' chains, which are typical for the crystal structures of amino acids and essential for considering amino acid crystals as mimics of peptide chains. Both compounds crystallize in centrosymmetric space groups (Pbca and C2/c, respectively) and have two N,N-dimethyl­glycine zwitterions in the asymmetric unit. In the anhydrous compound, there are no head-to-tail chains but the zwitterions form R44(20) ring motifs, which are not bonded to each other by any hydrogen bonds. In contrast, in the crystal structure of N,N-dimethyl­glycinium hemihydrate, the zwitterions are linked to each other by N—H...O hydrogen bonds into infinite C22(10) head-to-tail chains, while the water mol­ecules outside the chains provide additional hydrogen bonds to the carboxyl­ate groups.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270112027643/ku3073sup1.cif
Contains datablocks I, II, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270112027643/ku3073Isup2.hkl
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270112027643/ku3073IIsup3.hkl
Contains datablock II

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S0108270112027643/ku3073Isup4.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S0108270112027643/ku3073IIsup5.cml
Supplementary material

CCDC references: 899065; 899066

Comment top

Glycine is the smallest amino acid and has no chiral C atom. Despite its simplicity glycine attracts great interest, being extensively studied as an individual molecule in the gas phase or in inert matrixes, as well as in solution and in the solid state (Boldyreva, 2008, and references therein). Under ambient conditions, as shown in the pioneering work by Bernal (1931), glycine crystallizes in three different polymorphs, namely the α-, β- and γ-forms, depending on subtle changes in the crystallization conditions. The zwitterions of glycine in these polymorphs form `head-to-tail' chains linked via N—H···O hydrogen bonds between the terminal amino and carboxylate groups (Marsh, 1958; Iitaka, 1960, 1961), which can mimic peptide chains. These head-to-tail chains are very robust, and are preserved on solid-state polymorphic transitions induced by variations in temperature (Boldyreva et al., 2003) or pressure (Boldyreva et al., 2004, 2005; Dawson et al., 2005; Goryainov et al., 2005, 2006).

Such head-to-tail chains are present in the crystal structures of all other α-amino acids (Suresh & Vijayan, 1983; Boldyreva, 2008; Görbitz, 2010) and they are essential for considering amino acid crystals as mimics of peptide chains. The formation of these head-to-tail chains is favoured by dipole–dipole interactions and agrees with optimizing the close packing. For example, in N,N,N-trimethylglycine (Viertorinne et al., 1999), where no hydrogen bonds are possible, head-to-tail chains of zwitterions are formed because of Coulombic forces between the dipoles. In addition to these factors, the very possibility of the formation of these chains, as well as their robustness and dynamics on variation of pressure and temperature, have been supposed to be closely related to the ability of the terminal amino groups to form additional hydrogen bonds to neighbouring molecules outside the chain (Kolesov & Boldyreva, 2010, 2011). Excluding these additional hydrogen bonds, e.g. by partial methylation of the amino group, may therefore have a significant effect on the crystal packing.

Hitherto, only the crystal structure of N-methylglycine (Trzebiatowska-Gusowska & Gagor, 2007; Dittrich & Spackman, 2007) has been published, and the head-to-tail chains are present therein. In N-methylglycine, an amino group forms a second hydrogen bond, in addition to that linking zwitterions within a chain, and this agrees with the hypothesis that such additional hydrogen bonds are essential for head-to-tail chain formation. We have therefore decided to study the crystal structures of N,N-dimethylglycine, (I), and its hemihydrate, (II). In (I), only one type of N—H···O hydrogen bond is possible and one might expect that no head-to-tail chains could be formed. In (II), the presence of water molecules could give a chance of forming additional hydrogen bonds, and thus head-to-tail chains might become possible. Our present study has confirmed our original hypothesis and provides a successful example of crystal engineering.

Compound (I) crystallizes in the orthorhombic system (space group Pbca), as is the case for mono- and trimethylglycine, whereas (II) crystallizes in the monoclinic space group C2/c. In both crystal structures, there are two N,N-dimethylglycine zwitterions in the asymmetric unit with different molecular conformations (see Fig. 1 and selected torsion angles in Table 1). For previously known structures, an increase in methylation of an amino group results in a decrease in the twisting of the molecule, which can be characterized by the value of the N—C—C—O torsion angle, i.e. the main backbone of the molecule becomes more planar. Thus, the largest value of this torsion angle was observed for three polymorphs of glycine: 25.03 (12)° in β-glycine (Drebushchak, Boldyreva & Shutova, 2002), 19.0 (1)° in α-glycine (Drebushchak, Boldyreva, Seretkin & Shutova, 2002) and 15.4 (1)° in γ-glycine (Kvick et al., 1980), whereas its value in N-methylglycine is 5.6 (2)° (Trzebiatowska-Gusowska & Gagor, 2007) and just 0.0 (2)° in N,N,N-trimethylglycine (Viertorinne et al., 1999). A nearly planar backbone conformation was found earlier in two salts of N,N-dimethylglycine where the molecule is in the cationic form, namely in N,N-dimethylglycine hydrochloride [2.2 (2)°; Santarsiero & Marsh, 1983] and N,N-dimethylglycinium trifluoroacetate [3.2 (3)°; Rodrigues et al., 2001]. The molecular conformation in the N,N-dimethylglycine hydrate, (II) [N—C—C—O torsion angles for the two different molecules in the asymmetric unit are 5.21 (17) and 8.71 (18)°], also follows the general trend. However, the molecular conformation of the N,N-dimethylglycine in (I) does not conform to this correlation and is close to that found in the glycine polymorphs.

The difference in the conformations of the N,N-dimethylglycine zwitterions in (I) and (II) is mainly related to the different orientations of the carboxylate group, whereas the difference in the orientations of the methyl groups in the two structures is almost negligible (Table 1). Interestingly, in contrast with (I) and (II), the difference in the N—C—C—O torsion angle in the crystal structures of N,N,N-trimethylglycine and its hydrate is not large [0.0 (2) and 2.3 (3)°, respectively; Mak, 1990].

Several conformations of an isolated neutral molecule of N,N-dimethylglycine (Headley & Starnes, 1996, 1998; Gómez-Zavaglia et al., 2003; Lesarri et al., 2005) and of its isolated zwitterion (Headley & Starnes, 1998) have been predicted by ab initio calculations. For a neutral molecule, the predicted average value of the N—C—C—O torsion angle in the lowest energy conformer is 20 (4)°. The existence of this conformer, together with two other conformers (with a syn arrangment for N—C—C—O), has been proven experimentally by means of low-temperature matrix isolation FT–IR spectroscopy (Gómez-Zavaglia et al., 2003) and combined laser ablation with molecular-beam Fourier transform microwave spectroscopy (Lesarri et al., 2005). For isolated zwitterions, the optimized molecular geometry for the two most stable conformers had a planar N—C—C—O torsion angle (Headley & Starnes, 1998). Interestingly, in (I), the average value of the N—C—C—O torsion angle in the N,N-dimethylglycine zwitterion is similar to the value predicted for the ground state of a neutral molecule, whereas in (II) the zwitterions are planar and their geometry is in a good agreement with theoretical calculations. Although the non-planar conformation of a ground-state conformer of a neutral molecule should facilitate the formation of an intramolecular O—H···N hydrogen bond, in turn resulting in additional stabilization of the molecular conformation, this intramolecular hydrogen bond is not formed in the crystal structures of either (I) or (II), and was not observed in ab initio calculations for isolated zwitterions.

The orientation of the methyl groups in the crystal structures of (I) and (II) is quite similar (Table 1). It is interesting that such an orientation of the methyl groups is inherent in the most stable conformer of neutral N,N-dimethylglycine [CH3—N—C—C torsion angles of about 152 and -82° (Headley & Starnes, 1996, 1998; Gómez-Zavaglia et al., 2003)], in contrast with that predicted for N,N-dimethylglycine zwitterions [±63.4° for the lowest energy zwitterion and ±114.2° for the next highest (Headley & Starnes, 1998)].

Geometric data for the hydrogen bonds in the crystal structures of (I) and (II) are summarized in Tables 2 and 3. Since the amino group is twice methylated and has only one H atom, there is only one N—H···O hydrogen bond per molecule in the asymmetric units of the two structures. Substitution of the H atoms of ammonia for alkyl groups is known to increase the basicity of ammines. Hence, the hydrogen bonds formed in the crystal structure of N,N-dimethylglycine can be expected to be stronger than those in glycine. Indeed, even the hydrogen bonds in the most stable γ-polymorph of glycine (Drebushchak et al., 2003), with N···O distances of 2.809 (2), 2.809 (2) and 2.987 (2) Å (Kvick et al., 1980), are considerably longer than those in (I) and (II). The hydrogen bonds in N-methylglycine, with N···O distances of 2.7886 (16) and 2.7599 (17) Å (Trzebiatowska-Gusowska & Gagor, 2007), are also longer than those in (I) and (II). Not only are the N—H···O hydrogen bonds in (I) shorter than those in (II), but also the nature of these hydrogen bonds in the two structures is different. In (II), the N—H···O hydrogen bonds include atoms O1 as acceptors, while in (I) a zwitterion A forms a hydrogen bond with atom O1 (cis with respect to the N atom) of a zwitterion B, which is in turn bonded to atom O2 (trans to the N atom) of a zwitterion A (Fig. 2). A water molecule in (II) forms two O—H···O hydrogen bonds with two carboxylate groups of N,N-dimethylglycine, using atoms O2 as acceptors.

In the anhydrous compound, (I), four zwitterions of N,N-dimethylglycine, two molecules each of A and B, are linked to each other via N1A—H1A···O1B and N1B—H1B···O2A(-x, -y + 1, -z + 1) hydrogen bonds to form a ring motif of R44(20) type (Etter et al., 1990) centred at the centre of inversion 1. The formation of such insular motifs, which are not hydrogen-bonded between each other, is very unusual for crystalline amino acids. In contrast, in the crystal structure of the hemihydrate, (II), the A and B zwitterions are linked to each other via N1A—H1A···O1B and N1B—H1B···O1A(x, -y + 1, z + 1/2) hydrogen bonds into infinite C22(10) head-to-tail chains extending along the crystallographic c axis, whereas the water molecules outside the chains provide additional O—H···O hydrogen bonds to the carboxylate groups (Fig. 2). Such infinite head-to-tail chains [if the chain were formed by zwitterions of the same crystallographic symmetry, it would be termed a C(5) chain] are common structure-forming motifs, not only in the glycine family but for all α-amino acids known at the present time (Suresh & Vijayan, 1983; Allen, 2002; Boldyreva, 2008; Görbitz, 2010). In this way, two-dimensional layers parallel to the crystallographic (100) plane are formed (Figs. 2 and 3). These layers are not linked to each other by hydrogen bonds, but are packed so that the distances between layers are not the same. Therefore, two alternating domains are formed: dense double layers, with an interlayer distance of 3.713 (2) Å, and loose layers, with a distance of 6.019 (2) Å.

In contrast, the crystal structure of (I) does not have such alternating domains, and the packing density is distributed homogeneously throughout the structure. Although the ring motifs in (I) are not linked to each other by hydrogen bonds, one can find `pseudolayers' parallel to the (100) crystallographic plane and formed by assembling these motifs (Fig. 3). The layers in (II) and the pseudolayers in (I) are antiparallel to each other, and are stacked along the [100] crystallographic direction.

Related literature top

For related literature, see: Allen (2002); Bernal (1931); Boldyreva (2008); Boldyreva et al. (2003, 2004, 2005); Dawson et al. (2005); Dittrich & Spackman (2007); Drebushchak et al. (2003); Drebushchak, Boldyreva & Shutova (2002); Drebushchak, Boldyreva, Seretkin & Shutova (2002); Etter et al. (1990); Görbitz (2010); Gómez-Zavaglia, Reva & Fausto (2003); Goryainov et al. (2005, 2006); Headley & Starnes (1996, 1998); Iitaka (1960, 1961); Kolesov & Boldyreva (2010, 2011); Kvick et al. (1980); Lesarri et al. (2005); Mak (1990); Marsh (1958); Rodrigues et al. (2001); Santarsiero & Marsh (1983); Suresh & Vijayan (1983); Trzebiatowska-Gusowska & Gagor (2007); Viertorinne et al. (1999).

Experimental top

Prismatic crystals of (I) were obtained by sublimation. A purchased sample of N,N-dimethylglycine (Aldrich) was found to be a hydrate. It was ground and then placed in a vacuum chamber. The chamber was kept at 353 K and 1 mbar (1 bar = 100000 Pa) for 27 h, after which colourless well shaped crystals of (I) were found condensed on the cold part of the vacuum chamber. Prismatic colourless crystals of (II) were crystallized from solution in an ethanol–water mixture (1:1 v/v) by slow evaporation under ambient conditions. All mounted crystals were covered with a thin layer of CryoOil, to protect them from the ambient atmosphere. Compound (I) is very sensitive to ambient humidity, and if the value exceeds 15% the crystals instantly absorb water within a few minutes.

Refinement top

All H atoms were found in a difference Fourier map and their positions were refined freely, with Uiso(H) = 1.5Ueq(C) for terminal methyl H atoms and or 1.2Ueq(parent) otherwise.

Computing details top

For both compounds, data collection: CrysAlis CCD (Oxford Diffraction, 2008); cell refinement: CrysAlis CCD (Oxford Diffraction, 2008); data reduction: CrysAlis RED (Oxford Diffraction, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008) and ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: publCIF (Westrip, 2010).

Figures top
[Figure 1] Fig. 1. The asymmetric units of (a) (I) and (b) (II), showing the atom-labelling schemes. Displacement ellipsoids are drawn at the 50% probability level.
[Figure 2] Fig. 2. Fragments of the crystal structures of (I) and (II), representing the hydrogen-bonding and structural motifs. Hydrogen bonds are shown as dashed lines, and H atoms of the CH2 and CH3 groups have been omitted. (a) An R44(20) ring motif in (I) [symmetry code: (i) -x, -y + 1, -z + 1]. (b) A C22(10) infinite chain in (II), extending along the crystallographic c axis, and the O—H···O hydrogen bonds formed by water molecules, which function as bridges between these chains [symmetry codes: (j) x, -y + 1, z - 1/2; (jj) x, y, z -1; (jjj) x, -y + 2, z - 1/2].
[Figure 3] Fig. 3. Fragments of the crystal structures of (a) (I) and (b) (II). Hydrogen bonds are shown as dashed lines, and non-hydrogen-bonded H atoms of the CH2 and CH3 groups have been omitted.
(I) 2-(Dimethylamino)acetic acid top
Crystal data top
C4H9NO2Dx = 1.302 Mg m3
Mr = 103.12Melting point: 451 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 19159 reflections
a = 11.2228 (3) Åθ = 4.2–45.4°
b = 10.0097 (3) ŵ = 0.10 mm1
c = 18.7285 (4) ÅT = 295 K
V = 2103.90 (10) Å3Prism, colourless
Z = 160.4 × 0.35 × 0.2 mm
F(000) = 896
Data collection top
Oxford Gemini Ultra R
diffractometer
2712 independent reflections
Radiation source: fine-focus sealed tube2475 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
Detector resolution: 10.3457 pixels mm-1θmax = 28.7°, θmin = 4.2°
ω scansh = 1515
Absorption correction: multi-scan
(CrysAlis RED; Oxford Diffraction, 2008)
k = 1313
Tmin = 0.960, Tmax = 0.980l = 2525
56342 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: difference Fourier map
wR(F2) = 0.115Only H-atom coordinates refined
S = 1.06 w = 1/[σ2(Fo2) + (0.0606P)2 + 0.3986P]
where P = (Fo2 + 2Fc2)/3
2712 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = 0.19 e Å3
0 constraints
Crystal data top
C4H9NO2V = 2103.90 (10) Å3
Mr = 103.12Z = 16
Orthorhombic, PbcaMo Kα radiation
a = 11.2228 (3) ŵ = 0.10 mm1
b = 10.0097 (3) ÅT = 295 K
c = 18.7285 (4) Å0.4 × 0.35 × 0.2 mm
Data collection top
Oxford Gemini Ultra R
diffractometer
2712 independent reflections
Absorption correction: multi-scan
(CrysAlis RED; Oxford Diffraction, 2008)
2475 reflections with I > 2σ(I)
Tmin = 0.960, Tmax = 0.980Rint = 0.031
56342 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0410 restraints
wR(F2) = 0.115Only H-atom coordinates refined
S = 1.06Δρmax = 0.28 e Å3
2712 reflectionsΔρmin = 0.19 e Å3
181 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A0.06371 (7)0.73440 (9)0.50066 (4)0.0316 (2)
H1A0.1135 (12)0.6847 (13)0.4750 (7)0.038*
N1B0.13313 (8)0.45069 (9)0.27281 (4)0.0335 (2)
H1B0.0744 (13)0.4604 (13)0.3032 (7)0.040*
O2A0.07817 (8)0.53742 (12)0.66264 (5)0.0585 (3)
O2B0.36999 (9)0.58032 (11)0.38201 (6)0.0597 (3)
C1B0.26546 (10)0.55743 (11)0.36546 (5)0.0360 (2)
C2B0.24866 (9)0.44448 (11)0.31153 (5)0.0343 (2)
H22B0.2514 (12)0.3612 (14)0.3374 (8)0.041*
H21B0.3083 (14)0.4467 (13)0.2776 (7)0.041*
O1B0.17369 (10)0.61252 (11)0.38790 (5)0.0603 (3)
C2A0.01419 (9)0.65464 (11)0.56079 (5)0.0339 (2)
H21A0.0328 (13)0.7181 (14)0.5914 (7)0.041*
H22A0.0413 (13)0.5899 (14)0.5419 (7)0.041*
O1A0.21041 (9)0.57217 (11)0.57718 (6)0.0626 (3)
C1A0.11077 (9)0.58250 (11)0.60357 (6)0.0363 (2)
C4A0.13201 (12)0.85164 (12)0.52758 (7)0.0434 (3)
H41A0.0761 (16)0.9082 (17)0.5563 (9)0.065*
H43A0.1953 (16)0.8174 (17)0.5594 (9)0.065*
H42A0.1646 (16)0.8963 (18)0.4872 (10)0.065*
C4B0.12858 (12)0.56642 (14)0.22350 (7)0.0472 (3)
H41B0.1925 (18)0.5572 (18)0.1859 (10)0.071*
H43B0.0524 (19)0.5645 (18)0.1984 (10)0.071*
H42B0.1367 (16)0.6474 (18)0.2513 (10)0.071*
C3B0.11100 (13)0.32456 (15)0.23337 (7)0.0519 (3)
H31B0.1709 (19)0.3162 (19)0.1963 (10)0.078*
H33B0.1150 (18)0.2498 (19)0.2676 (10)0.078*
H32B0.0327 (19)0.3294 (19)0.2115 (10)0.078*
C3A0.03296 (12)0.77908 (14)0.45193 (7)0.0477 (3)
H31A0.0913 (18)0.8256 (19)0.4808 (10)0.072*
H32A0.0656 (17)0.7007 (19)0.4288 (9)0.072*
H33A0.0003 (17)0.8388 (18)0.4152 (10)0.072*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0311 (4)0.0360 (4)0.0277 (4)0.0046 (3)0.0010 (3)0.0021 (3)
N1B0.0268 (4)0.0472 (5)0.0267 (4)0.0002 (3)0.0003 (3)0.0016 (3)
O2A0.0337 (4)0.1009 (8)0.0410 (5)0.0053 (4)0.0030 (3)0.0255 (5)
O2B0.0469 (5)0.0760 (7)0.0563 (6)0.0187 (5)0.0095 (4)0.0127 (5)
C1B0.0400 (5)0.0412 (5)0.0268 (4)0.0038 (4)0.0010 (4)0.0005 (4)
C2B0.0284 (4)0.0420 (5)0.0326 (5)0.0032 (4)0.0033 (4)0.0040 (4)
O1B0.0580 (6)0.0770 (7)0.0460 (5)0.0133 (5)0.0023 (4)0.0253 (5)
C2A0.0283 (4)0.0396 (5)0.0340 (5)0.0023 (4)0.0035 (4)0.0010 (4)
O1A0.0423 (5)0.0827 (7)0.0629 (6)0.0283 (5)0.0198 (4)0.0279 (5)
C1A0.0305 (5)0.0433 (5)0.0352 (5)0.0033 (4)0.0027 (4)0.0032 (4)
C4A0.0461 (6)0.0407 (6)0.0435 (6)0.0069 (5)0.0013 (5)0.0002 (5)
C4B0.0433 (6)0.0605 (8)0.0378 (6)0.0093 (5)0.0004 (5)0.0110 (5)
C3B0.0491 (7)0.0603 (8)0.0463 (6)0.0105 (6)0.0086 (5)0.0127 (6)
C3A0.0477 (6)0.0547 (7)0.0406 (6)0.0071 (5)0.0127 (5)0.0036 (5)
Geometric parameters (Å, º) top
N1A—C3A1.4866 (14)C2A—H21A1.005 (14)
N1A—C2A1.4881 (13)C2A—H22A0.966 (15)
N1A—C4A1.4897 (14)O1A—C1A1.2269 (14)
N1A—H1A0.890 (14)C4A—H41A1.002 (18)
N1B—C4B1.4823 (15)C4A—H43A0.989 (18)
N1B—C3B1.4837 (16)C4A—H42A0.952 (19)
N1B—C2B1.4868 (13)C4B—H41B1.01 (2)
N1B—H1B0.876 (15)C4B—H43B0.98 (2)
O2A—C1A1.2496 (13)C4B—H42B0.968 (18)
O2B—C1B1.2349 (14)C3B—H31B0.97 (2)
C1B—O1B1.2415 (15)C3B—H33B0.987 (19)
C1B—C2B1.5278 (14)C3B—H32B0.97 (2)
C2B—H22B0.965 (14)C3A—H31A0.97 (2)
C2B—H21B0.923 (15)C3A—H32A0.97 (2)
C2A—C1A1.5292 (14)C3A—H33A0.982 (19)
C3A—N1A—C2A110.70 (9)O1A—C1A—O2A126.38 (11)
C3A—N1A—C4A110.26 (9)O1A—C1A—C2A118.35 (10)
C2A—N1A—C4A111.02 (8)O2A—C1A—C2A115.26 (9)
C3A—N1A—H1A107.2 (8)N1A—C4A—H41A107.7 (10)
C2A—N1A—H1A110.1 (8)N1A—C4A—H43A107.5 (10)
C4A—N1A—H1A107.5 (8)H41A—C4A—H43A108.8 (14)
C4B—N1B—C3B110.44 (10)N1A—C4A—H42A107.4 (11)
C4B—N1B—C2B111.51 (9)H41A—C4A—H42A113.7 (14)
C3B—N1B—C2B110.68 (9)H43A—C4A—H42A111.5 (15)
C4B—N1B—H1B107.0 (9)N1B—C4B—H41B109.8 (10)
C3B—N1B—H1B107.0 (9)N1B—C4B—H43B108.4 (11)
C2B—N1B—H1B110.0 (9)H41B—C4B—H43B106.5 (14)
O2B—C1B—O1B128.37 (11)N1B—C4B—H42B108.4 (11)
O2B—C1B—C2B114.87 (10)H41B—C4B—H42B112.7 (15)
O1B—C1B—C2B116.75 (10)H43B—C4B—H42B111.0 (15)
N1B—C2B—C1B113.52 (9)N1B—C3B—H31B108.3 (12)
N1B—C2B—H22B108.0 (8)N1B—C3B—H33B108.3 (11)
C1B—C2B—H22B107.6 (8)H31B—C3B—H33B111.7 (16)
N1B—C2B—H21B107.2 (9)N1B—C3B—H32B108.6 (12)
C1B—C2B—H21B110.4 (9)H31B—C3B—H32B109.2 (15)
H22B—C2B—H21B110.1 (12)H33B—C3B—H32B110.7 (17)
N1A—C2A—C1A112.65 (8)N1A—C3A—H31A107.2 (11)
N1A—C2A—H21A106.8 (8)N1A—C3A—H32A107.9 (11)
C1A—C2A—H21A111.8 (8)H31A—C3A—H32A112.5 (16)
N1A—C2A—H22A108.9 (8)N1A—C3A—H33A109.9 (11)
C1A—C2A—H22A109.4 (8)H31A—C3A—H33A110.5 (15)
H21A—C2A—H22A107.1 (12)H32A—C3A—H33A108.7 (14)
C4A—N1A—C2A—C1A69.04 (11)C4B—N1B—C2B—C1B68.80 (12)
C3A—N1A—C2A—C1A168.16 (9)C3B—N1B—C2B—C1B167.84 (10)
O2A—C1A—C2A—N1A165.70 (10)O2B—C1B—C2B—N1B158.74 (10)
O1A—C1A—C2A—N1A15.45 (15)O1B—C1B—C2B—N1B22.50 (14)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O1B0.890 (14)1.907 (14)2.7334 (12)153.7 (12)
N1B—H1B···O2Ai0.876 (15)1.828 (15)2.6645 (12)158.9 (13)
Symmetry code: (i) x, y+1, z+1.
(II) 2-(Dimethylamino)acetic acid hemihydrate top
Crystal data top
C4H9NO2·0.5H2OF(000) = 976
Mr = 112.13Dx = 1.283 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 5711 reflections
a = 20.0403 (8) Åθ = 3.0–37.5°
b = 10.7329 (4) ŵ = 0.11 mm1
c = 11.1120 (5) ÅT = 295 K
β = 103.780 (4)°Prism, colourless
V = 2321.29 (17) Å30.4 × 0.25 × 0.2 mm
Z = 16
Data collection top
Oxford Gemini Ultra R
diffractometer
2891 independent reflections
Radiation source: fine-focus sealed tube2311 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.041
Detector resolution: 10.3457 pixels mm-1θmax = 28.3°, θmin = 3.0°
ω scansh = 2626
Absorption correction: multi-scan
(CrysAlis RED; Oxford Diffraction, 2008)
k = 1414
Tmin = 0.959, Tmax = 0.979l = 1414
23107 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: difference Fourier map
wR(F2) = 0.119Only H-atom coordinates refined
S = 1.03 w = 1/[σ2(Fo2) + (0.0581P)2 + 0.6228P]
where P = (Fo2 + 2Fc2)/3
2891 reflections(Δ/σ)max < 0.001
196 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = 0.15 e Å3
0 constraints
Crystal data top
C4H9NO2·0.5H2OV = 2321.29 (17) Å3
Mr = 112.13Z = 16
Monoclinic, C2/cMo Kα radiation
a = 20.0403 (8) ŵ = 0.11 mm1
b = 10.7329 (4) ÅT = 295 K
c = 11.1120 (5) Å0.4 × 0.25 × 0.2 mm
β = 103.780 (4)°
Data collection top
Oxford Gemini Ultra R
diffractometer
2891 independent reflections
Absorption correction: multi-scan
(CrysAlis RED; Oxford Diffraction, 2008)
2311 reflections with I > 2σ(I)
Tmin = 0.959, Tmax = 0.979Rint = 0.041
23107 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0420 restraints
wR(F2) = 0.119Only H-atom coordinates refined
S = 1.03Δρmax = 0.21 e Å3
2891 reflectionsΔρmin = 0.15 e Å3
196 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A0.28381 (5)0.47991 (9)0.13230 (9)0.0320 (2)
H1A0.3219 (8)0.4557 (13)0.1879 (13)0.038*
N1B0.48450 (5)0.27436 (10)0.50065 (10)0.0357 (2)
H1B0.4565 (8)0.3192 (13)0.5367 (14)0.043*
C2B0.44060 (6)0.19935 (12)0.39996 (12)0.0354 (3)
H21B0.4695 (8)0.1604 (14)0.3550 (14)0.043*
H22B0.4162 (8)0.1402 (14)0.4387 (14)0.043*
O1A0.40011 (4)0.61262 (9)0.13228 (9)0.0445 (3)
O1B0.37882 (5)0.38664 (9)0.33421 (9)0.0490 (3)
C1A0.34878 (6)0.67936 (12)0.12587 (11)0.0361 (3)
C1B0.38577 (6)0.27469 (12)0.31117 (11)0.0362 (3)
C2A0.28173 (7)0.61760 (12)0.13521 (14)0.0406 (3)
H21A0.2449 (8)0.6435 (15)0.0688 (15)0.049*
H22A0.2705 (8)0.6446 (14)0.2125 (15)0.049*
O2B0.35118 (5)0.21550 (10)0.22104 (9)0.0534 (3)
O2A0.34510 (6)0.79447 (9)0.11332 (12)0.0588 (3)
O30.40461 (7)1.02552 (12)0.11151 (13)0.0681 (4)
H320.3860 (11)1.079 (2)0.154 (2)0.082*
H310.3891 (11)0.955 (2)0.1293 (19)0.082*
C3B0.52585 (8)0.19174 (18)0.59824 (15)0.0534 (4)
H32B0.4946 (11)0.1348 (19)0.6293 (19)0.080*
H33B0.5517 (11)0.2454 (19)0.666 (2)0.080*
H31B0.5575 (11)0.143 (2)0.5602 (19)0.080*
C4A0.28773 (8)0.43160 (16)0.00943 (13)0.0463 (3)
H43A0.3233 (10)0.4784 (18)0.0174 (16)0.070*
H41A0.2451 (11)0.4461 (17)0.0407 (18)0.070*
H42A0.2958 (9)0.3460 (19)0.0182 (17)0.070*
C3A0.22366 (8)0.42524 (16)0.16962 (16)0.0486 (4)
H32A0.2220 (10)0.4516 (17)0.2448 (19)0.073*
H33A0.2291 (10)0.338 (2)0.1690 (18)0.073*
H31A0.1838 (11)0.4486 (19)0.1070 (18)0.073*
C4B0.53029 (9)0.36074 (17)0.45253 (19)0.0576 (4)
H42B0.5558 (11)0.408 (2)0.524 (2)0.086*
H43B0.5009 (11)0.415 (2)0.388 (2)0.086*
H41B0.5623 (11)0.309 (2)0.417 (2)0.086*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0285 (5)0.0326 (5)0.0341 (5)0.0011 (4)0.0057 (4)0.0034 (4)
N1B0.0270 (5)0.0394 (6)0.0411 (6)0.0015 (4)0.0089 (4)0.0049 (4)
C2B0.0364 (6)0.0326 (6)0.0362 (6)0.0017 (5)0.0064 (5)0.0003 (5)
O1A0.0311 (4)0.0484 (6)0.0543 (6)0.0025 (4)0.0104 (4)0.0064 (4)
O1B0.0583 (6)0.0371 (5)0.0457 (5)0.0114 (4)0.0003 (5)0.0018 (4)
C1A0.0361 (6)0.0363 (6)0.0354 (6)0.0061 (5)0.0078 (5)0.0017 (5)
C1B0.0374 (6)0.0377 (6)0.0339 (6)0.0026 (5)0.0090 (5)0.0028 (5)
C2A0.0346 (6)0.0335 (6)0.0571 (8)0.0014 (5)0.0176 (6)0.0016 (6)
O2B0.0541 (6)0.0501 (6)0.0473 (6)0.0074 (5)0.0051 (5)0.0086 (4)
O2A0.0588 (7)0.0335 (5)0.0858 (8)0.0088 (5)0.0208 (6)0.0021 (5)
O30.0762 (9)0.0491 (7)0.0910 (9)0.0116 (6)0.0437 (7)0.0114 (6)
C3B0.0377 (7)0.0710 (11)0.0458 (8)0.0114 (7)0.0015 (6)0.0007 (7)
C4A0.0457 (8)0.0538 (8)0.0400 (7)0.0072 (7)0.0110 (6)0.0069 (6)
C3A0.0444 (8)0.0519 (8)0.0531 (9)0.0122 (7)0.0188 (7)0.0054 (7)
C4B0.0455 (8)0.0551 (9)0.0784 (12)0.0147 (7)0.0270 (8)0.0091 (8)
Geometric parameters (Å, º) top
N1A—C2A1.4790 (16)C2A—H21A0.952 (17)
N1A—C4A1.4799 (17)C2A—H22A0.982 (16)
N1A—C3A1.4857 (16)O3—H320.88 (2)
N1A—H1A0.898 (15)O3—H310.86 (2)
N1B—C2B1.4849 (16)C3B—H32B0.99 (2)
N1B—C3B1.4902 (19)C3B—H33B0.99 (2)
N1B—C4B1.4905 (18)C3B—H31B0.99 (2)
N1B—H1B0.902 (15)C4A—H43A0.98 (2)
C2B—C1B1.5226 (17)C4A—H41A0.92 (2)
C2B—H21B0.947 (15)C4A—H42A0.93 (2)
C2B—H22B0.963 (15)C3A—H32A0.89 (2)
O1A—C1A1.2416 (16)C3A—H33A0.94 (2)
O1B—C1B1.2432 (15)C3A—H31A0.96 (2)
C1A—O2A1.2436 (16)C4B—H42B0.98 (2)
C1A—C2A1.5238 (17)C4B—H43B1.00 (2)
C1B—O2B1.2476 (16)C4B—H41B1.00 (2)
C2A—N1A—C4A112.22 (11)C1A—C2A—H22A108.7 (9)
C2A—N1A—C3A111.07 (11)H21A—C2A—H22A107.2 (13)
C4A—N1A—C3A110.12 (11)H32—O3—H31103.4 (19)
C2A—N1A—H1A107.3 (9)N1B—C3B—H32B109.3 (12)
C4A—N1A—H1A108.1 (9)N1B—C3B—H33B107.9 (12)
C3A—N1A—H1A107.9 (9)H32B—C3B—H33B110.6 (17)
C2B—N1B—C3B110.65 (11)N1B—C3B—H31B107.9 (12)
C2B—N1B—C4B111.83 (11)H32B—C3B—H31B109.9 (17)
C3B—N1B—C4B110.36 (12)H33B—C3B—H31B111.2 (16)
C2B—N1B—H1B107.8 (10)N1A—C4A—H43A107.8 (11)
C3B—N1B—H1B106.9 (9)N1A—C4A—H41A104.7 (12)
C4B—N1B—H1B109.2 (9)H43A—C4A—H41A111.8 (16)
N1B—C2B—C1B114.01 (10)N1A—C4A—H42A107.1 (12)
N1B—C2B—H21B108.1 (9)H43A—C4A—H42A114.7 (16)
C1B—C2B—H21B109.2 (9)H41A—C4A—H42A110.1 (16)
N1B—C2B—H22B107.0 (9)N1A—C3A—H32A110.6 (13)
C1B—C2B—H22B106.0 (9)N1A—C3A—H33A106.6 (12)
H21B—C2B—H22B112.5 (13)H32A—C3A—H33A110.6 (17)
O1A—C1A—O2A127.29 (12)N1A—C3A—H31A106.6 (11)
O1A—C1A—C2A118.50 (11)H32A—C3A—H31A112.7 (17)
O2A—C1A—C2A114.21 (12)H33A—C3A—H31A109.4 (17)
O1B—C1B—O2B126.11 (12)N1B—C4B—H42B106.1 (12)
O1B—C1B—C2B118.61 (11)N1B—C4B—H43B108.0 (12)
O2B—C1B—C2B115.27 (11)H42B—C4B—H43B112.8 (18)
N1A—C2A—C1A113.78 (10)N1B—C4B—H41B107.6 (12)
N1A—C2A—H21A107.2 (10)H42B—C4B—H41B110.6 (17)
C1A—C2A—H21A110.6 (10)H43B—C4B—H41B111.5 (17)
N1A—C2A—H22A109.1 (9)
C4A—N1A—C2A—C1A68.95 (15)C4B—N1B—C2B—C1B69.06 (14)
C3A—N1A—C2A—C1A167.30 (12)C3B—N1B—C2B—C1B167.47 (11)
O2A—C1A—C2A—N1A171.84 (12)O2B—C1B—C2B—N1B175.43 (11)
O1A—C1A—C2A—N1A8.71 (18)O1B—C1B—C2B—N1B5.21 (17)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O1B0.898 (15)1.901 (15)2.7614 (14)160.0 (13)
N1A—H1A···O2B0.898 (15)2.651 (14)3.1959 (14)120.0 (11)
O3—H31···O2A0.86 (2)1.92 (2)2.7538 (16)162 (2)
N1B—H1B···O1Ai0.902 (15)1.874 (15)2.7657 (14)169.3 (13)
O3—H32···O2Bii0.88 (2)1.86 (2)2.7215 (17)169 (2)
Symmetry codes: (i) x, y+1, z+1/2; (ii) x, y+1, z.

Experimental details

(I)(II)
Crystal data
Chemical formulaC4H9NO2C4H9NO2·0.5H2O
Mr103.12112.13
Crystal system, space groupOrthorhombic, PbcaMonoclinic, C2/c
Temperature (K)295295
a, b, c (Å)11.2228 (3), 10.0097 (3), 18.7285 (4)20.0403 (8), 10.7329 (4), 11.1120 (5)
α, β, γ (°)90, 90, 9090, 103.780 (4), 90
V3)2103.90 (10)2321.29 (17)
Z1616
Radiation typeMo KαMo Kα
µ (mm1)0.100.11
Crystal size (mm)0.4 × 0.35 × 0.20.4 × 0.25 × 0.2
Data collection
DiffractometerOxford Gemini Ultra R
diffractometer
Oxford Gemini Ultra R
diffractometer
Absorption correctionMulti-scan
(CrysAlis RED; Oxford Diffraction, 2008)
Multi-scan
(CrysAlis RED; Oxford Diffraction, 2008)
Tmin, Tmax0.960, 0.9800.959, 0.979
No. of measured, independent and
observed [I > 2σ(I)] reflections
56342, 2712, 2475 23107, 2891, 2311
Rint0.0310.041
(sin θ/λ)max1)0.6760.667
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.041, 0.115, 1.06 0.042, 0.119, 1.03
No. of reflections27122891
No. of parameters181196
H-atom treatmentOnly H-atom coordinates refinedOnly H-atom coordinates refined
Δρmax, Δρmin (e Å3)0.28, 0.190.21, 0.15

Computer programs: CrysAlis CCD (Oxford Diffraction, 2008), CrysAlis RED (Oxford Diffraction, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Macrae et al., 2008) and ORTEP-3 (Farrugia, 1997), publCIF (Westrip, 2010).

Hydrogen-bond geometry (Å, º) for (I) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O1B0.890 (14)1.907 (14)2.7334 (12)153.7 (12)
N1B—H1B···O2Ai0.876 (15)1.828 (15)2.6645 (12)158.9 (13)
Symmetry code: (i) x, y+1, z+1.
Hydrogen-bond geometry (Å, º) for (II) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O1B0.898 (15)1.901 (15)2.7614 (14)160.0 (13)
N1A—H1A···O2B0.898 (15)2.651 (14)3.1959 (14)120.0 (11)
O3—H31···O2A0.86 (2)1.92 (2)2.7538 (16)162 (2)
N1B—H1B···O1Ai0.902 (15)1.874 (15)2.7657 (14)169.3 (13)
O3—H32···O2Bii0.88 (2)1.86 (2)2.7215 (17)169 (2)
Symmetry codes: (i) x, y+1, z+1/2; (ii) x, y+1, z.
Selected torsion angles (°) in (I) and (II) top
Torsion angle(I)(II)
C1A—C2A—N1A—C3A168.16 (9)167.30 (12)
C1B—C2B—N1B—C3B-167.84 (10)-167.47 (11)
C1A—C2A—N1A—C4A-69.04 (11)-68.95 (15)
C1B—C2B—N1B—C4B68.80 (12)69.06 (14)
N1A—C2A—C1A—O1A-15.45 (15)-8.71 (18)
N1B—C2B—C1B—O1B22.50 (14)5.21 (17)
N1A—C2A—C1A—O2A165.70 (10)171.84 (12)
N1B—C2B—C1B—O2B-158.74 (10)-175.43 (11)
 

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