Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807041591/kp2109sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807041591/kp2109Isup2.hkl |
CCDC reference: 660367
Key indicators
- Single-crystal X-ray study
- T = 292 K
- Mean (C-C) = 0.004 Å
- Disorder in solvent or counterion
- R factor = 0.056
- wR factor = 0.171
- Data-to-parameter ratio = 13.8
checkCIF/PLATON results
No syntax errors found
Alert level C ABSTY03_ALERT_1_C The _exptl_absorpt_correction_type has been given as none. However values have been given for Tmin and Tmax. Remove these if an absorption correction has not been applied. From the CIF: _exptl_absorpt_correction_T_min 0.858 From the CIF: _exptl_absorpt_correction_T_max 0.891 RINTA01_ALERT_3_C The value of Rint is greater than 0.10 Rint given 0.106 PLAT020_ALERT_3_C The value of Rint is greater than 0.10 ......... 0.11 PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT166_ALERT_4_C S.U's Given on Coordinates for calc-flagged .... H26A PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.94 Ratio PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for C26 PLAT302_ALERT_4_C Anion/Solvent Disorder ......................... 43.00 Perc. PLAT779_ALERT_2_C Suspect or Irrelevant (Bond) Angle in CIF ...... 26.90 Deg. CL2 -C26 -CL2' 1.555 1.555 1.555 PLAT779_ALERT_2_C Suspect or Irrelevant (Bond) Angle in CIF ...... 31.20 Deg. CL1' -C26 -CL1 1.555 1.555 1.555 PLAT779_ALERT_2_C Suspect or Irrelevant (Bond) Angle in CIF ...... 25.50 Deg. CL3 -C26 -CL3' 1.555 1.555 1.555 PLAT779_ALERT_2_C Suspect or Irrelevant (Bond) Angle in CIF ...... 12.00 Deg. H26A -C26 -H26B 1.555 1.555 1.555
Alert level G PLAT793_ALERT_1_G Check the Absolute Configuration of C12 = ... S PLAT793_ALERT_1_G Check the Absolute Configuration of C19 = ... S PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 18
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 12 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 4 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 5 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
For related literature, see: Hof et al. (2002); Hu et al. (2007); Lagona et al. (2003); Li et al. (2006); Rebek (2005); Rowan et al. (1999); Wu et al. (2002); Yin et al. (2006); Sheldrick (2003).
The title compound was synthesized in analogy to the literature procedure of Lagona et al. (2003), Crystals appropriate for data collection were obtained by slow evaporation from a methanol-chloroform solution (1:20 V/V) of (I).
The H atoms were constrained to an ideal geometry and constrained to ride on their parent atoms as follows: methylene H with d(C—H)=0.97 Å and Uiso(H) = 1.2Ueq(C); methine H with d(C—H)=0.98 Å and Uiso(H) = 1.2Ueq(C); aromatic H with d(C—H)=0.93 Å and Uiso(H) = 1.2Ueq(C). The solvent molecule chloroform is disorder over two sites; the site-occupancy factors for the two orientations were refined by DFIX, giving 0.891 (4) and 0.109 (4) for the major and minor components, respectively.
The glycoluryl skeleton has served as an important building blocks for preparations of supramolecular systems including molecular clips (Rowan et al., 1999; Yin et al., 2006; Li et al., 2006; Hu et al., 2007), molecular capsules (Hof et al., 2002; Rebek 2005) and the cucurbit[n]uryl family (Lagona et al., 2003). Many methylene-bridged glycoluryl dimers have been synthesized by dimerization reaction of glycoluryl derivatives (Wu et al., 2002). In this paper we report the crystal structure of the title compound (I).
The chirality of the molecule is induced by the inverted nitrogen atoms generating two chiral carbon atoms of the same absolute configuration (C12 and C19). The space group is centrosymmetric and the crystalline compound is a racemate. In the crystal structure of (I) (Fig. 1) the interplanar angle between the two five-membered rings C11/N4/C12/C19/N5 and C10/N3/C12/C19/N5 is 69.5 (1)° whereas the angle between the planes of the two benzene rings C13/C14/C15/C16/C17/C18 and C20/C21/C22/C23/C24/C25 is 66.4 (2) °. The aromatic ring (C1/C2/C3/C4/C5/C6) is coplanar with the five-membered (C1/C6/C7/N1/N2) ring. The molecules are connected by intermolecular C—H···O and N—H···O hydrogen bonds (Table 1and Fig. 2).
For related literature, see: Hof et al. (2002); Hu et al. (2007); Lagona et al. (2003); Li et al. (2006); Rebek (2005); Rowan et al. (1999); Wu et al. (2002); Yin et al. (2006); Sheldrick (2003).
Data collection: SMART (Bruker, 2001); cell refinement: SMART; data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Sheldrick, 2000); software used to prepare material for publication: SHELXTL.
C25H20N6O3.CHCl3 | F(000) = 1176 |
Mr = 571.84 | Dx = 1.463 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 9009 reflections |
a = 17.3315 (12) Å | θ = 2.3–26.2° |
b = 8.4507 (6) Å | µ = 0.40 mm−1 |
c = 17.7874 (12) Å | T = 292 K |
β = 94.652 (1)° | Block, colourless |
V = 2596.6 (3) Å3 | 0.40 × 0.30 × 0.30 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 3995 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.106 |
Graphite monochromator | θmax = 26.0°, θmin = 2.3° |
φ and ω scans | h = −21→21 |
26236 measured reflections | k = −10→10 |
5081 independent reflections | l = −21→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.171 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.1P)2 + 0.1644P] where P = (Fo2 + 2Fc2)/3 |
5081 reflections | (Δ/σ)max < 0.001 |
368 parameters | Δρmax = 0.55 e Å−3 |
18 restraints | Δρmin = −0.45 e Å−3 |
C25H20N6O3.CHCl3 | V = 2596.6 (3) Å3 |
Mr = 571.84 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 17.3315 (12) Å | µ = 0.40 mm−1 |
b = 8.4507 (6) Å | T = 292 K |
c = 17.7874 (12) Å | 0.40 × 0.30 × 0.30 mm |
β = 94.652 (1)° |
Bruker SMART CCD area-detector diffractometer | 3995 reflections with I > 2σ(I) |
26236 measured reflections | Rint = 0.106 |
5081 independent reflections |
R[F2 > 2σ(F2)] = 0.056 | 18 restraints |
wR(F2) = 0.171 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.55 e Å−3 |
5081 reflections | Δρmin = −0.45 e Å−3 |
368 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | −0.01228 (12) | 0.6113 (2) | 0.09136 (11) | 0.0406 (5) | |
C2 | −0.08340 (13) | 0.6849 (3) | 0.07437 (13) | 0.0512 (6) | |
H2 | −0.0897 | 0.7649 | 0.0385 | 0.061* | |
C3 | −0.14406 (14) | 0.6327 (3) | 0.11352 (14) | 0.0579 (6) | |
H3 | −0.1925 | 0.6790 | 0.1037 | 0.070* | |
C4 | −0.13512 (15) | 0.5126 (3) | 0.16741 (14) | 0.0614 (7) | |
H4 | −0.1777 | 0.4796 | 0.1919 | 0.074* | |
C5 | −0.06507 (15) | 0.4427 (3) | 0.18466 (13) | 0.0548 (6) | |
H5 | −0.0592 | 0.3637 | 0.2211 | 0.066* | |
C6 | −0.00201 (13) | 0.4933 (2) | 0.14600 (11) | 0.0416 (5) | |
C7 | 0.07793 (12) | 0.4425 (2) | 0.15020 (11) | 0.0401 (5) | |
C8 | 0.19109 (11) | 0.5352 (2) | 0.08132 (11) | 0.0364 (4) | |
H8A | 0.2180 | 0.4513 | 0.1099 | 0.044* | |
H8B | 0.1949 | 0.5134 | 0.0282 | 0.044* | |
C9 | 0.07849 (11) | 0.7535 (2) | 0.00801 (11) | 0.0366 (4) | |
H9A | 0.0997 | 0.7030 | −0.0348 | 0.044* | |
H9B | 0.0327 | 0.8116 | −0.0108 | 0.044* | |
C10 | 0.24996 (12) | 0.7221 (2) | 0.17428 (11) | 0.0383 (4) | |
C11 | 0.11468 (11) | 0.9955 (2) | 0.08124 (10) | 0.0358 (4) | |
C12 | 0.21600 (10) | 0.8227 (2) | 0.05273 (10) | 0.0313 (4) | |
C13 | 0.25256 (11) | 0.8065 (2) | −0.02170 (10) | 0.0365 (4) | |
C14 | 0.31630 (13) | 0.7111 (3) | −0.02762 (13) | 0.0485 (5) | |
H14 | 0.3367 | 0.6539 | 0.0140 | 0.058* | |
C15 | 0.35027 (16) | 0.7001 (3) | −0.09556 (16) | 0.0656 (7) | |
H15 | 0.3932 | 0.6354 | −0.0990 | 0.079* | |
C16 | 0.32150 (18) | 0.7826 (4) | −0.15692 (15) | 0.0730 (8) | |
H16 | 0.3443 | 0.7735 | −0.2023 | 0.088* | |
C17 | 0.25842 (18) | 0.8798 (4) | −0.15183 (15) | 0.0716 (8) | |
H17 | 0.2390 | 0.9378 | −0.1936 | 0.086* | |
C18 | 0.22375 (14) | 0.8913 (3) | −0.08427 (12) | 0.0513 (6) | |
H18 | 0.1809 | 0.9565 | −0.0811 | 0.062* | |
C19 | 0.24895 (11) | 0.9617 (2) | 0.10817 (10) | 0.0337 (4) | |
C20 | 0.31752 (12) | 1.0523 (2) | 0.08231 (12) | 0.0405 (5) | |
C21 | 0.39225 (14) | 1.0119 (3) | 0.10742 (17) | 0.0604 (6) | |
H21 | 0.4010 | 0.9328 | 0.1435 | 0.073* | |
C22 | 0.45422 (17) | 1.0884 (4) | 0.0792 (2) | 0.0852 (10) | |
H22 | 0.5045 | 1.0594 | 0.0958 | 0.102* | |
C23 | 0.4419 (2) | 1.2067 (5) | 0.0271 (2) | 0.0919 (11) | |
H23 | 0.4838 | 1.2583 | 0.0085 | 0.110* | |
C24 | 0.3686 (2) | 1.2488 (4) | 0.00243 (19) | 0.0841 (10) | |
H24 | 0.3605 | 1.3292 | −0.0330 | 0.101* | |
C25 | 0.30584 (16) | 1.1725 (3) | 0.02971 (15) | 0.0579 (6) | |
H25 | 0.2558 | 1.2022 | 0.0127 | 0.069* | |
C26 | 0.46631 (16) | 0.5204 (3) | 0.23715 (15) | 0.0657 (7) | |
H26A | 0.443 (2) | 0.596 (4) | 0.270 (2) | 0.079* | 0.89 |
H26B | 0.4541 (8) | 0.5929 (15) | 0.2749 (7) | 0.079* | 0.11 |
Cl1 | 0.41377 (9) | 0.34312 (14) | 0.23910 (8) | 0.1022 (6) | 0.891 (4) |
Cl2 | 0.56162 (7) | 0.4907 (3) | 0.27090 (7) | 0.1030 (6) | 0.891 (4) |
Cl3 | 0.46003 (13) | 0.59902 (19) | 0.14665 (6) | 0.1049 (6) | 0.891 (4) |
Cl1' | 0.3909 (5) | 0.4067 (16) | 0.2006 (8) | 0.128 (5)* | 0.109 (4) |
Cl2' | 0.5452 (5) | 0.4011 (15) | 0.2668 (6) | 0.099 (4)* | 0.109 (4) |
Cl3' | 0.5003 (8) | 0.6358 (12) | 0.1606 (6) | 0.106 (4)* | 0.109 (4) |
N1 | 0.11038 (9) | 0.53202 (19) | 0.09645 (9) | 0.0394 (4) | |
N2 | 0.05607 (9) | 0.6324 (2) | 0.05924 (11) | 0.0449 (4) | |
N3 | 0.22939 (9) | 0.68300 (17) | 0.09983 (8) | 0.0336 (4) | |
N4 | 0.13463 (9) | 0.86380 (18) | 0.04135 (9) | 0.0346 (4) | |
N5 | 0.26771 (11) | 0.8756 (2) | 0.17713 (9) | 0.0426 (4) | |
N6 | 0.18148 (10) | 1.0629 (2) | 0.11157 (10) | 0.0401 (4) | |
O1 | 0.11387 (9) | 0.34349 (17) | 0.19079 (9) | 0.0515 (4) | |
O2 | 0.25289 (11) | 0.62845 (19) | 0.22639 (8) | 0.0567 (5) | |
O3 | 0.04941 (8) | 1.04336 (18) | 0.08530 (8) | 0.0476 (4) | |
H6 | 0.1812 (15) | 1.133 (2) | 0.1474 (11) | 0.057* | |
H5A | 0.2804 (14) | 0.920 (3) | 0.2196 (9) | 0.057* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0391 (11) | 0.0430 (11) | 0.0388 (11) | −0.0064 (8) | −0.0024 (8) | −0.0056 (8) |
C2 | 0.0422 (12) | 0.0570 (14) | 0.0530 (13) | −0.0005 (10) | −0.0038 (10) | 0.0019 (10) |
C3 | 0.0409 (12) | 0.0740 (16) | 0.0588 (15) | 0.0014 (11) | 0.0031 (11) | −0.0066 (12) |
C4 | 0.0514 (14) | 0.0790 (18) | 0.0560 (15) | −0.0111 (13) | 0.0173 (11) | −0.0100 (13) |
C5 | 0.0602 (15) | 0.0600 (14) | 0.0449 (13) | −0.0103 (11) | 0.0082 (10) | 0.0001 (10) |
C6 | 0.0469 (12) | 0.0424 (11) | 0.0348 (10) | −0.0067 (9) | −0.0001 (8) | −0.0049 (8) |
C7 | 0.0466 (11) | 0.0359 (10) | 0.0364 (10) | −0.0057 (8) | −0.0051 (8) | −0.0004 (8) |
C8 | 0.0376 (10) | 0.0318 (10) | 0.0388 (10) | 0.0017 (8) | −0.0033 (8) | −0.0017 (8) |
C9 | 0.0349 (10) | 0.0434 (11) | 0.0305 (9) | 0.0003 (8) | −0.0046 (7) | 0.0028 (8) |
C10 | 0.0414 (11) | 0.0392 (10) | 0.0331 (10) | −0.0020 (8) | −0.0045 (8) | 0.0019 (8) |
C11 | 0.0399 (11) | 0.0390 (10) | 0.0285 (9) | 0.0033 (8) | 0.0025 (7) | 0.0036 (7) |
C12 | 0.0323 (9) | 0.0320 (9) | 0.0290 (9) | 0.0006 (7) | −0.0016 (7) | −0.0005 (7) |
C13 | 0.0375 (10) | 0.0398 (10) | 0.0323 (10) | −0.0046 (8) | 0.0024 (8) | −0.0029 (8) |
C14 | 0.0437 (12) | 0.0572 (13) | 0.0449 (12) | 0.0042 (10) | 0.0066 (9) | −0.0007 (10) |
C15 | 0.0526 (15) | 0.0804 (18) | 0.0671 (17) | 0.0074 (13) | 0.0247 (12) | −0.0071 (14) |
C16 | 0.0769 (19) | 0.098 (2) | 0.0480 (15) | 0.0016 (17) | 0.0300 (13) | 0.0021 (14) |
C17 | 0.0815 (19) | 0.095 (2) | 0.0406 (13) | 0.0067 (16) | 0.0161 (13) | 0.0168 (13) |
C18 | 0.0557 (13) | 0.0604 (14) | 0.0383 (12) | 0.0059 (11) | 0.0074 (10) | 0.0079 (10) |
C19 | 0.0362 (10) | 0.0333 (9) | 0.0307 (9) | 0.0010 (7) | −0.0020 (7) | −0.0008 (7) |
C20 | 0.0407 (11) | 0.0360 (10) | 0.0449 (11) | −0.0052 (8) | 0.0047 (9) | −0.0064 (8) |
C21 | 0.0445 (13) | 0.0547 (14) | 0.0811 (18) | −0.0027 (10) | −0.0009 (12) | −0.0069 (12) |
C22 | 0.0457 (15) | 0.092 (2) | 0.120 (3) | −0.0150 (15) | 0.0184 (16) | −0.028 (2) |
C23 | 0.077 (2) | 0.098 (2) | 0.106 (3) | −0.040 (2) | 0.039 (2) | −0.019 (2) |
C24 | 0.108 (3) | 0.0687 (19) | 0.079 (2) | −0.0324 (18) | 0.0289 (18) | 0.0080 (15) |
C25 | 0.0628 (15) | 0.0493 (13) | 0.0619 (15) | −0.0099 (11) | 0.0066 (12) | 0.0081 (11) |
C26 | 0.0740 (17) | 0.0701 (17) | 0.0544 (15) | 0.0191 (14) | 0.0131 (12) | −0.0052 (13) |
Cl1 | 0.1324 (10) | 0.0798 (7) | 0.0974 (9) | −0.0179 (6) | 0.0280 (7) | −0.0191 (6) |
Cl2 | 0.0727 (7) | 0.1422 (15) | 0.0931 (8) | 0.0284 (7) | 0.0004 (5) | −0.0072 (7) |
Cl3 | 0.1443 (14) | 0.1069 (9) | 0.0636 (6) | 0.0391 (9) | 0.0090 (7) | 0.0229 (5) |
N1 | 0.0385 (9) | 0.0366 (9) | 0.0418 (9) | −0.0007 (7) | −0.0050 (7) | 0.0047 (7) |
N2 | 0.0320 (9) | 0.0491 (10) | 0.0530 (11) | −0.0022 (7) | −0.0008 (7) | 0.0133 (8) |
N3 | 0.0391 (9) | 0.0307 (8) | 0.0300 (8) | 0.0003 (6) | −0.0040 (6) | 0.0006 (6) |
N4 | 0.0322 (8) | 0.0381 (8) | 0.0328 (8) | 0.0025 (6) | −0.0025 (6) | −0.0021 (6) |
N5 | 0.0582 (11) | 0.0375 (9) | 0.0298 (9) | −0.0048 (8) | −0.0097 (8) | −0.0003 (7) |
N6 | 0.0420 (9) | 0.0373 (9) | 0.0410 (9) | 0.0036 (7) | 0.0022 (7) | −0.0093 (7) |
O1 | 0.0560 (10) | 0.0462 (8) | 0.0508 (9) | −0.0017 (7) | −0.0054 (7) | 0.0123 (7) |
O2 | 0.0823 (12) | 0.0475 (9) | 0.0372 (8) | −0.0149 (8) | −0.0140 (8) | 0.0126 (7) |
O3 | 0.0375 (8) | 0.0588 (9) | 0.0463 (8) | 0.0139 (7) | 0.0022 (6) | −0.0015 (7) |
C1—N2 | 1.368 (3) | C14—C15 | 1.390 (3) |
C1—C2 | 1.392 (3) | C14—H14 | 0.9300 |
C1—C6 | 1.394 (3) | C15—C16 | 1.355 (4) |
C2—C3 | 1.380 (3) | C15—H15 | 0.9300 |
C2—H2 | 0.9300 | C16—C17 | 1.376 (4) |
C3—C4 | 1.396 (4) | C16—H16 | 0.9300 |
C3—H3 | 0.9300 | C17—C18 | 1.390 (3) |
C4—C5 | 1.362 (4) | C17—H17 | 0.9300 |
C4—H4 | 0.9300 | C18—H18 | 0.9300 |
C5—C6 | 1.404 (3) | C19—N5 | 1.440 (2) |
C5—H5 | 0.9300 | C19—N6 | 1.454 (2) |
C6—C7 | 1.446 (3) | C19—C20 | 1.516 (3) |
C7—O1 | 1.240 (2) | C20—C21 | 1.378 (3) |
C7—N1 | 1.375 (3) | C20—C25 | 1.385 (3) |
C8—N3 | 1.440 (2) | C21—C22 | 1.382 (4) |
C8—N1 | 1.446 (3) | C21—H21 | 0.9300 |
C8—H8A | 0.9700 | C22—C23 | 1.369 (5) |
C8—H8B | 0.9700 | C22—H22 | 0.9300 |
C9—N4 | 1.440 (2) | C23—C24 | 1.357 (5) |
C9—N2 | 1.444 (2) | C23—H23 | 0.9300 |
C9—H9A | 0.9700 | C24—C25 | 1.386 (4) |
C9—H9B | 0.9700 | C24—H24 | 0.9300 |
C10—O2 | 1.217 (2) | C25—H25 | 0.9300 |
C10—N5 | 1.333 (3) | C26—Cl1' | 1.707 (7) |
C10—N3 | 1.383 (2) | C26—Cl2 | 1.730 (3) |
C11—O3 | 1.209 (2) | C26—Cl3 | 1.737 (3) |
C11—N6 | 1.362 (3) | C26—Cl2' | 1.746 (6) |
C11—N4 | 1.379 (2) | C26—Cl1 | 1.755 (3) |
C12—N4 | 1.450 (2) | C26—Cl3' | 1.811 (7) |
C12—N3 | 1.456 (2) | C26—H26A | 0.98 (4) |
C12—C13 | 1.520 (3) | C26—H26B | 0.945 (8) |
C12—C19 | 1.608 (2) | N1—N2 | 1.394 (2) |
C13—C14 | 1.378 (3) | N5—H5A | 0.857 (10) |
C13—C18 | 1.382 (3) | N6—H6 | 0.868 (10) |
N2—C1—C2 | 129.3 (2) | N6—C19—C12 | 102.02 (14) |
N2—C1—C6 | 108.56 (18) | C20—C19—C12 | 115.52 (15) |
C2—C1—C6 | 122.1 (2) | C21—C20—C25 | 118.9 (2) |
C3—C2—C1 | 116.5 (2) | C21—C20—C19 | 121.0 (2) |
C3—C2—H2 | 121.8 | C25—C20—C19 | 120.0 (2) |
C1—C2—H2 | 121.8 | C20—C21—C22 | 120.2 (3) |
C2—C3—C4 | 122.2 (2) | C20—C21—H21 | 119.9 |
C2—C3—H3 | 118.9 | C22—C21—H21 | 119.9 |
C4—C3—H3 | 118.9 | C23—C22—C21 | 120.3 (3) |
C5—C4—C3 | 121.1 (2) | C23—C22—H22 | 119.8 |
C5—C4—H4 | 119.4 | C21—C22—H22 | 119.8 |
C3—C4—H4 | 119.4 | C24—C23—C22 | 120.0 (3) |
C4—C5—C6 | 118.2 (2) | C24—C23—H23 | 120.0 |
C4—C5—H5 | 120.9 | C22—C23—H23 | 120.0 |
C6—C5—H5 | 120.9 | C23—C24—C25 | 120.4 (3) |
C1—C6—C5 | 119.9 (2) | C23—C24—H24 | 119.8 |
C1—C6—C7 | 108.41 (18) | C25—C24—H24 | 119.8 |
C5—C6—C7 | 131.7 (2) | C20—C25—C24 | 120.1 (3) |
O1—C7—N1 | 124.20 (19) | C20—C25—H25 | 120.0 |
O1—C7—C6 | 131.6 (2) | C24—C25—H25 | 120.0 |
N1—C7—C6 | 104.19 (16) | Cl1'—C26—Cl2 | 136.9 (5) |
N3—C8—N1 | 114.13 (16) | Cl1'—C26—Cl3 | 82.8 (5) |
N3—C8—H8A | 108.7 | Cl2—C26—Cl3 | 111.31 (17) |
N1—C8—H8A | 108.7 | Cl1'—C26—Cl2' | 110.3 (5) |
N3—C8—H8B | 108.7 | Cl2—C26—Cl2' | 26.9 (4) |
N1—C8—H8B | 108.7 | Cl3—C26—Cl2' | 119.3 (4) |
H8A—C8—H8B | 107.6 | Cl1'—C26—Cl1 | 31.2 (5) |
N4—C9—N2 | 113.96 (15) | Cl2—C26—Cl1 | 110.59 (16) |
N4—C9—H9A | 108.8 | Cl3—C26—Cl1 | 110.56 (17) |
N2—C9—H9A | 108.8 | Cl2'—C26—Cl1 | 84.0 (4) |
N4—C9—H9B | 108.8 | Cl1'—C26—Cl3' | 107.6 (5) |
N2—C9—H9B | 108.8 | Cl2—C26—Cl3' | 88.8 (4) |
H9A—C9—H9B | 107.7 | Cl3—C26—Cl3' | 25.5 (4) |
O2—C10—N5 | 127.50 (18) | Cl2'—C26—Cl3' | 104.1 (4) |
O2—C10—N3 | 124.42 (19) | Cl1—C26—Cl3' | 132.5 (5) |
N5—C10—N3 | 108.05 (16) | Cl1'—C26—H26A | 105 (2) |
O3—C11—N6 | 127.32 (18) | Cl2—C26—H26A | 108 (2) |
O3—C11—N4 | 125.12 (18) | Cl3—C26—H26A | 108 (2) |
N6—C11—N4 | 107.51 (17) | Cl2'—C26—H26A | 123 (2) |
N4—C12—N3 | 112.47 (15) | Cl1—C26—H26A | 108 (2) |
N4—C12—C13 | 111.68 (14) | Cl3'—C26—H26A | 106 (2) |
N3—C12—C13 | 111.72 (15) | Cl1'—C26—H26B | 115.3 (8) |
N4—C12—C19 | 101.76 (13) | Cl2—C26—H26B | 96.3 (9) |
N3—C12—C19 | 101.96 (13) | Cl3—C26—H26B | 114.2 (9) |
C13—C12—C19 | 116.60 (15) | Cl2'—C26—H26B | 112.0 (8) |
C14—C13—C18 | 118.75 (19) | Cl1—C26—H26B | 113.1 (9) |
C14—C13—C12 | 120.85 (18) | Cl3'—C26—H26B | 106.9 (8) |
C18—C13—C12 | 120.38 (18) | H26A—C26—H26B | 12 (2) |
C13—C14—C15 | 120.3 (2) | C7—N1—N2 | 111.51 (16) |
C13—C14—H14 | 119.9 | C7—N1—C8 | 126.60 (16) |
C15—C14—H14 | 119.9 | N2—N1—C8 | 121.76 (16) |
C16—C15—C14 | 120.8 (2) | C1—N2—N1 | 107.27 (16) |
C16—C15—H15 | 119.6 | C1—N2—C9 | 129.95 (17) |
C14—C15—H15 | 119.6 | N1—N2—C9 | 121.67 (15) |
C15—C16—C17 | 119.8 (2) | C10—N3—C8 | 120.30 (16) |
C15—C16—H16 | 120.1 | C10—N3—C12 | 111.95 (15) |
C17—C16—H16 | 120.1 | C8—N3—C12 | 121.53 (14) |
C16—C17—C18 | 120.0 (2) | C11—N4—C9 | 123.04 (16) |
C16—C17—H17 | 120.0 | C11—N4—C12 | 113.75 (15) |
C18—C17—H17 | 120.0 | C9—N4—C12 | 121.30 (15) |
C13—C18—C17 | 120.4 (2) | C10—N5—C19 | 115.06 (16) |
C13—C18—H18 | 119.8 | C10—N5—H5A | 120.2 (18) |
C17—C18—H18 | 119.8 | C19—N5—H5A | 123.6 (18) |
N5—C19—N6 | 112.86 (16) | C11—N6—C19 | 113.47 (16) |
N5—C19—C20 | 112.66 (16) | C11—N6—H6 | 121.3 (17) |
N6—C19—C20 | 111.60 (16) | C19—N6—H6 | 118.8 (18) |
N5—C19—C12 | 101.41 (14) | ||
N2—C1—C2—C3 | 176.2 (2) | C23—C24—C25—C20 | −0.2 (5) |
C6—C1—C2—C3 | −1.2 (3) | O1—C7—N1—N2 | 179.60 (18) |
C1—C2—C3—C4 | 0.0 (4) | C6—C7—N1—N2 | −0.6 (2) |
C2—C3—C4—C5 | 1.1 (4) | O1—C7—N1—C8 | −4.5 (3) |
C3—C4—C5—C6 | −0.9 (4) | C6—C7—N1—C8 | 175.28 (17) |
N2—C1—C6—C5 | −176.52 (19) | N3—C8—N1—C7 | −112.6 (2) |
C2—C1—C6—C5 | 1.4 (3) | N3—C8—N1—N2 | 62.9 (2) |
N2—C1—C6—C7 | 2.4 (2) | C2—C1—N2—N1 | 179.6 (2) |
C2—C1—C6—C7 | −179.69 (19) | C6—C1—N2—N1 | −2.7 (2) |
C4—C5—C6—C1 | −0.3 (3) | C2—C1—N2—C9 | 11.7 (4) |
C4—C5—C6—C7 | −178.9 (2) | C6—C1—N2—C9 | −170.53 (19) |
C1—C6—C7—O1 | 178.7 (2) | C7—N1—N2—C1 | 2.1 (2) |
C5—C6—C7—O1 | −2.6 (4) | C8—N1—N2—C1 | −174.03 (17) |
C1—C6—C7—N1 | −1.1 (2) | C7—N1—N2—C9 | 171.13 (17) |
C5—C6—C7—N1 | 177.6 (2) | C8—N1—N2—C9 | −5.0 (3) |
N4—C12—C13—C14 | −153.83 (18) | N4—C9—N2—C1 | 109.2 (2) |
N3—C12—C13—C14 | −26.9 (2) | N4—C9—N2—N1 | −57.1 (2) |
C19—C12—C13—C14 | 89.8 (2) | O2—C10—N3—C8 | 15.8 (3) |
N4—C12—C13—C18 | 28.2 (3) | N5—C10—N3—C8 | −166.13 (17) |
N3—C12—C13—C18 | 155.12 (19) | O2—C10—N3—C12 | 168.5 (2) |
C19—C12—C13—C18 | −88.2 (2) | N5—C10—N3—C12 | −13.4 (2) |
C18—C13—C14—C15 | −0.5 (3) | N1—C8—N3—C10 | 75.2 (2) |
C12—C13—C14—C15 | −178.5 (2) | N1—C8—N3—C12 | −74.9 (2) |
C13—C14—C15—C16 | 0.0 (4) | N4—C12—N3—C10 | −97.09 (18) |
C14—C15—C16—C17 | 0.7 (5) | C13—C12—N3—C10 | 136.40 (17) |
C15—C16—C17—C18 | −1.0 (5) | C19—C12—N3—C10 | 11.15 (19) |
C14—C13—C18—C17 | 0.2 (4) | N4—C12—N3—C8 | 55.2 (2) |
C12—C13—C18—C17 | 178.3 (2) | C13—C12—N3—C8 | −71.3 (2) |
C16—C17—C18—C13 | 0.5 (4) | C19—C12—N3—C8 | 163.46 (16) |
N4—C12—C19—N5 | 111.33 (15) | O3—C11—N4—C9 | −9.1 (3) |
N3—C12—C19—N5 | −4.98 (18) | N6—C11—N4—C9 | 173.40 (16) |
C13—C12—C19—N5 | −126.92 (17) | O3—C11—N4—C12 | −173.50 (18) |
N4—C12—C19—N6 | −5.30 (17) | N6—C11—N4—C12 | 9.0 (2) |
N3—C12—C19—N6 | −121.60 (15) | N2—C9—N4—C11 | −85.1 (2) |
C13—C12—C19—N6 | 116.45 (17) | N2—C9—N4—C12 | 78.2 (2) |
N4—C12—C19—C20 | −126.54 (16) | N3—C12—N4—C11 | 106.46 (17) |
N3—C12—C19—C20 | 117.15 (17) | C13—C12—N4—C11 | −127.01 (16) |
C13—C12—C19—C20 | −4.8 (2) | C19—C12—N4—C11 | −1.91 (19) |
N5—C19—C20—C21 | 20.5 (3) | N3—C12—N4—C9 | −58.2 (2) |
N6—C19—C20—C21 | 148.6 (2) | C13—C12—N4—C9 | 68.3 (2) |
C12—C19—C20—C21 | −95.4 (2) | C19—C12—N4—C9 | −166.61 (15) |
N5—C19—C20—C25 | −162.89 (19) | O2—C10—N5—C19 | −172.2 (2) |
N6—C19—C20—C25 | −34.7 (3) | N3—C10—N5—C19 | 9.9 (2) |
C12—C19—C20—C25 | 81.2 (2) | N6—C19—N5—C10 | 105.7 (2) |
C25—C20—C21—C22 | −1.2 (4) | C20—C19—N5—C10 | −126.81 (19) |
C19—C20—C21—C22 | 175.4 (2) | C12—C19—N5—C10 | −2.7 (2) |
C20—C21—C22—C23 | 1.0 (5) | O3—C11—N6—C19 | 169.48 (19) |
C21—C22—C23—C24 | −0.4 (5) | N4—C11—N6—C19 | −13.1 (2) |
C22—C23—C24—C25 | 0.0 (5) | N5—C19—N6—C11 | −96.61 (19) |
C21—C20—C25—C24 | 0.8 (4) | C20—C19—N6—C11 | 135.33 (17) |
C19—C20—C25—C24 | −175.9 (2) | C12—C19—N6—C11 | 11.4 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5A···O1i | 0.86 (1) | 2.42 (2) | 3.004 (2) | 126 (2) |
N5—H5A···O2i | 0.86 (1) | 2.11 (2) | 2.782 (2) | 135 (2) |
N6—H6···O2i | 0.87 (1) | 2.44 (2) | 3.062 (2) | 130 (2) |
N6—H6···O1ii | 0.87 (1) | 2.30 (2) | 3.041 (2) | 144 (2) |
C8—H8A···O1 | 0.97 | 2.57 | 2.938 (3) | 103 |
C14—H14···N3 | 0.93 | 2.51 | 2.832 (3) | 101 |
C18—H18···N4 | 0.93 | 2.51 | 2.827 (3) | 100 |
C21—H21···N5 | 0.93 | 2.48 | 2.821 (3) | 102 |
C26—H26A···O1i | 0.98 (4) | 2.43 (4) | 3.364 (3) | 158 (3) |
C9—H9B···O3iii | 0.97 | 2.23 | 3.165 (2) | 161 |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) x, y+1, z; (iii) −x, −y+2, −z. |
Experimental details
Crystal data | |
Chemical formula | C25H20N6O3.CHCl3 |
Mr | 571.84 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 292 |
a, b, c (Å) | 17.3315 (12), 8.4507 (6), 17.7874 (12) |
β (°) | 94.652 (1) |
V (Å3) | 2596.6 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.40 |
Crystal size (mm) | 0.40 × 0.30 × 0.30 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26236, 5081, 3995 |
Rint | 0.106 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.171, 1.12 |
No. of reflections | 5081 |
No. of parameters | 368 |
No. of restraints | 18 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.55, −0.45 |
Computer programs: SMART (Bruker, 2001), SMART, SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Sheldrick, 2000), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5A···O1i | 0.857 (10) | 2.42 (2) | 3.004 (2) | 126 (2) |
N5—H5A···O2i | 0.857 (10) | 2.11 (2) | 2.782 (2) | 135 (2) |
N6—H6···O2i | 0.868 (10) | 2.44 (2) | 3.062 (2) | 130 (2) |
N6—H6···O1ii | 0.868 (10) | 2.298 (17) | 3.041 (2) | 144 (2) |
C8—H8A···O1 | 0.97 | 2.57 | 2.938 (3) | 102.8 |
C14—H14···N3 | 0.93 | 2.51 | 2.832 (3) | 100.5 |
C18—H18···N4 | 0.93 | 2.51 | 2.827 (3) | 100.4 |
C21—H21···N5 | 0.93 | 2.48 | 2.821 (3) | 101.7 |
C26—H26A···O1i | 0.98 (4) | 2.43 (4) | 3.364 (3) | 158 (3) |
C9—H9B···O3iii | 0.97 | 2.23 | 3.165 (2) | 161.4 |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) x, y+1, z; (iii) −x, −y+2, −z. |
Subscribe to Acta Crystallographica Section E: Crystallographic Communications
The full text of this article is available to subscribers to the journal.
- Information on subscribing
- Sample issue
- If you have already subscribed, you may need to register
The glycoluryl skeleton has served as an important building blocks for preparations of supramolecular systems including molecular clips (Rowan et al., 1999; Yin et al., 2006; Li et al., 2006; Hu et al., 2007), molecular capsules (Hof et al., 2002; Rebek 2005) and the cucurbit[n]uryl family (Lagona et al., 2003). Many methylene-bridged glycoluryl dimers have been synthesized by dimerization reaction of glycoluryl derivatives (Wu et al., 2002). In this paper we report the crystal structure of the title compound (I).
The chirality of the molecule is induced by the inverted nitrogen atoms generating two chiral carbon atoms of the same absolute configuration (C12 and C19). The space group is centrosymmetric and the crystalline compound is a racemate. In the crystal structure of (I) (Fig. 1) the interplanar angle between the two five-membered rings C11/N4/C12/C19/N5 and C10/N3/C12/C19/N5 is 69.5 (1)° whereas the angle between the planes of the two benzene rings C13/C14/C15/C16/C17/C18 and C20/C21/C22/C23/C24/C25 is 66.4 (2) °. The aromatic ring (C1/C2/C3/C4/C5/C6) is coplanar with the five-membered (C1/C6/C7/N1/N2) ring. The molecules are connected by intermolecular C—H···O and N—H···O hydrogen bonds (Table 1and Fig. 2).