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The structures of the mono- and sesquihydrates of 2,6-bis(1H-benzimidazol-2-yl)pyridine (bbip) are reported. Phase (I), C19H13N5·H2O, has one water and one bbip molecule in the asymmetric unit, while phase (II), C19H13N5·1.5H2O, has three water molecules and two bbip molecules in the asymmetric unit. The compounds exhibit very similar molecular geometries but different packing organizations, which result from intricate hydrogen-bonding schemes.
Supporting information
CCDC references: 214172; 214173
Crystals of bbip appeared as a by-product of the synthesis of different metallic bbip–thiosulfate complexes. In these attempts the ligand was dissolved in dimethylformamide, while the thiosulfate and metal salts were incorporated as aqueous solutions. On standing, small but well shaped crystals of the two differently hydrated species appeared, accompanying the main crop of crystals of the corresponding metal bbip–thiosulfate complex.
In spite of their good external appearance, the crystals were of poor diffracting power, as can be assessed by the low Nobs/Nuniq ratio, and hence the data sets were chopped at a 2θ angle of 50°. H atoms attached to C atoms were added at expected positions and treated as riding. H atoms attached to the water molecule and to the protonated N atoms in bbip were found in the final? difference Fourier map and refined with restrained N—H (0.85 Å), O—H (0.90 Å) and H···H (1.66 × O—H) distances.
For both compounds, data collection: SMART-NT (Bruker, 2001); cell refinement: SMART-NT; data reduction: SAINT-NT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: XP in SHELXTL/PC (Sheldrick, 1994); software used to prepare material for publication: SHELXL97.
(I) 2,6-bis(2-benzimidazolyl) pyridine, hydrate
top
Crystal data top
C19H13N5·H2O | F(000) = 688 |
Mr = 329.36 | Dx = 1.305 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 7.522 (2) Å | Cell parameters from 102 reflections |
b = 20.367 (3) Å | θ = 2.1–23.7° |
c = 11.264 (2) Å | µ = 0.09 mm−1 |
β = 103.76 (2)° | T = 293 K |
V = 1676.2 (6) Å3 | Prisms, colorless |
Z = 4 | 0.18 × 0.12 × 0.10 mm |
Data collection top
CCD area detector diffractometer | 1660 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.045 |
Graphite monochromator | θmax = 25.0°, θmin = 2.0° |
ϕ and ω scans | h = −8→8 |
8338 measured reflections | k = −24→21 |
2924 independent reflections | l = −13→13 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: geom+difmap |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.91 | w = 1/[σ2(Fo2) + (0.0454P)2] where P = (Fo2 + 2Fc2)/3 |
2924 reflections | (Δ/σ)max = 0.007 |
243 parameters | Δρmax = 0.16 e Å−3 |
3 restraints | Δρmin = −0.15 e Å−3 |
Crystal data top
C19H13N5·H2O | V = 1676.2 (6) Å3 |
Mr = 329.36 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.522 (2) Å | µ = 0.09 mm−1 |
b = 20.367 (3) Å | T = 293 K |
c = 11.264 (2) Å | 0.18 × 0.12 × 0.10 mm |
β = 103.76 (2)° | |
Data collection top
CCD area detector diffractometer | 1660 reflections with I > 2σ(I) |
8338 measured reflections | Rint = 0.045 |
2924 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.048 | 3 restraints |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.91 | Δρmax = 0.16 e Å−3 |
2924 reflections | Δρmin = −0.15 e Å−3 |
243 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.5126 (3) | 0.58651 (9) | 0.58909 (17) | 0.0520 (5) | |
H1N | 0.405 (2) | 0.6036 (10) | 0.5951 (18) | 0.058 (7)* | |
N2 | 0.7812 (2) | 0.57789 (9) | 0.53676 (16) | 0.0541 (5) | |
N3 | 0.4350 (2) | 0.70397 (9) | 0.47026 (16) | 0.0510 (5) | |
N4 | 0.1553 (3) | 0.84866 (9) | 0.38475 (17) | 0.0609 (6) | |
N5 | 0.1393 (3) | 0.76701 (10) | 0.51517 (18) | 0.0541 (5) | |
H5N | 0.154 (3) | 0.7254 (10) | 0.546 (2) | 0.096 (10)* | |
C1 | 0.5934 (3) | 0.53014 (11) | 0.6436 (2) | 0.0515 (6) | |
C2 | 0.5386 (4) | 0.48450 (12) | 0.7204 (2) | 0.0671 (7) | |
H2 | 0.4284 | 0.4883 | 0.7435 | 0.081* | |
C3 | 0.6584 (4) | 0.43353 (13) | 0.7595 (2) | 0.0762 (8) | |
H3 | 0.6275 | 0.4018 | 0.8105 | 0.091* | |
C4 | 0.8224 (4) | 0.42770 (13) | 0.7260 (2) | 0.0774 (8) | |
H4 | 0.8979 | 0.3922 | 0.7548 | 0.093* | |
C5 | 0.8778 (3) | 0.47273 (12) | 0.6512 (2) | 0.0678 (7) | |
H5 | 0.9885 | 0.4684 | 0.6288 | 0.081* | |
C6 | 0.7596 (3) | 0.52525 (11) | 0.6106 (2) | 0.0534 (6) | |
C7 | 0.6293 (3) | 0.61262 (11) | 0.5257 (2) | 0.0497 (6) | |
C8 | 0.5835 (3) | 0.67270 (11) | 0.45459 (19) | 0.0499 (6) | |
C9 | 0.6854 (3) | 0.69453 (12) | 0.3744 (2) | 0.0614 (7) | |
H9 | 0.7870 | 0.6712 | 0.3640 | 0.074* | |
C10 | 0.6314 (4) | 0.75160 (13) | 0.3108 (2) | 0.0694 (8) | |
H10 | 0.6982 | 0.7678 | 0.2575 | 0.083* | |
C11 | 0.4798 (3) | 0.78453 (12) | 0.3257 (2) | 0.0646 (7) | |
H11 | 0.4414 | 0.8229 | 0.2824 | 0.078* | |
C12 | 0.3846 (3) | 0.75932 (11) | 0.4068 (2) | 0.0521 (6) | |
C13 | 0.2260 (3) | 0.79217 (11) | 0.4321 (2) | 0.0511 (6) | |
C14 | 0.0129 (3) | 0.86129 (11) | 0.4408 (2) | 0.0553 (6) | |
C15 | −0.1068 (3) | 0.91373 (12) | 0.4284 (2) | 0.0717 (8) | |
H15 | −0.1000 | 0.9484 | 0.3758 | 0.086* | |
C16 | −0.2359 (4) | 0.91293 (14) | 0.4962 (3) | 0.0788 (8) | |
H16 | −0.3180 | 0.9477 | 0.4891 | 0.095* | |
C17 | −0.2475 (4) | 0.86171 (14) | 0.5752 (2) | 0.0747 (8) | |
H17 | −0.3377 | 0.8627 | 0.6191 | 0.090* | |
C18 | −0.1290 (3) | 0.80970 (12) | 0.5902 (2) | 0.0645 (7) | |
H18 | −0.1360 | 0.7755 | 0.6437 | 0.077* | |
C19 | 0.0013 (3) | 0.81028 (11) | 0.5220 (2) | 0.0517 (6) | |
O1W | 0.1483 (2) | 0.63257 (9) | 0.62654 (17) | 0.0635 (5) | |
H1WA | 0.036 (3) | 0.6151 (13) | 0.586 (2) | 0.123 (12)* | |
H1WB | 0.149 (4) | 0.6347 (12) | 0.7081 (18) | 0.104 (10)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0460 (12) | 0.0539 (13) | 0.0579 (13) | 0.0017 (10) | 0.0160 (10) | −0.0051 (10) |
N2 | 0.0499 (12) | 0.0580 (13) | 0.0560 (12) | 0.0006 (10) | 0.0157 (10) | −0.0039 (10) |
N3 | 0.0498 (12) | 0.0539 (12) | 0.0519 (12) | 0.0018 (9) | 0.0174 (9) | −0.0026 (9) |
N4 | 0.0634 (14) | 0.0667 (13) | 0.0589 (13) | 0.0128 (11) | 0.0272 (11) | 0.0116 (10) |
N5 | 0.0536 (13) | 0.0559 (14) | 0.0586 (13) | 0.0038 (11) | 0.0249 (10) | 0.0060 (10) |
C1 | 0.0468 (14) | 0.0489 (14) | 0.0561 (15) | −0.0047 (12) | 0.0071 (12) | −0.0081 (12) |
C2 | 0.0613 (17) | 0.0726 (18) | 0.0674 (17) | −0.0146 (14) | 0.0150 (14) | −0.0023 (14) |
C3 | 0.079 (2) | 0.0661 (18) | 0.078 (2) | −0.0109 (16) | 0.0079 (16) | 0.0112 (15) |
C4 | 0.070 (2) | 0.0676 (19) | 0.089 (2) | 0.0037 (15) | 0.0076 (16) | 0.0090 (16) |
C5 | 0.0567 (16) | 0.0699 (18) | 0.0734 (18) | 0.0061 (14) | 0.0089 (14) | −0.0038 (15) |
C6 | 0.0495 (15) | 0.0534 (15) | 0.0542 (15) | −0.0011 (12) | 0.0063 (12) | −0.0072 (12) |
C7 | 0.0457 (14) | 0.0513 (14) | 0.0530 (15) | −0.0014 (12) | 0.0133 (12) | −0.0095 (11) |
C8 | 0.0498 (14) | 0.0541 (15) | 0.0467 (14) | 0.0005 (11) | 0.0131 (11) | −0.0078 (11) |
C9 | 0.0605 (16) | 0.0726 (17) | 0.0569 (16) | 0.0085 (13) | 0.0255 (13) | −0.0030 (13) |
C10 | 0.0722 (18) | 0.086 (2) | 0.0612 (17) | 0.0115 (15) | 0.0376 (15) | 0.0108 (15) |
C11 | 0.0662 (17) | 0.0777 (17) | 0.0564 (16) | 0.0138 (14) | 0.0273 (14) | 0.0171 (13) |
C12 | 0.0516 (14) | 0.0573 (15) | 0.0500 (14) | 0.0017 (12) | 0.0172 (12) | 0.0017 (12) |
C13 | 0.0500 (14) | 0.0595 (15) | 0.0473 (14) | 0.0034 (12) | 0.0183 (11) | 0.0044 (12) |
C14 | 0.0550 (15) | 0.0620 (16) | 0.0524 (15) | 0.0074 (12) | 0.0199 (12) | 0.0057 (12) |
C15 | 0.0783 (19) | 0.0753 (19) | 0.0658 (18) | 0.0216 (15) | 0.0257 (15) | 0.0111 (14) |
C16 | 0.0735 (19) | 0.088 (2) | 0.080 (2) | 0.0273 (15) | 0.0287 (16) | 0.0045 (17) |
C17 | 0.0623 (18) | 0.100 (2) | 0.0674 (19) | 0.0117 (16) | 0.0270 (14) | 0.0015 (16) |
C18 | 0.0610 (16) | 0.0759 (17) | 0.0629 (17) | 0.0039 (14) | 0.0270 (14) | 0.0050 (14) |
C19 | 0.0486 (14) | 0.0599 (15) | 0.0499 (14) | −0.0008 (12) | 0.0184 (11) | −0.0002 (12) |
O1W | 0.0593 (12) | 0.0814 (13) | 0.0528 (11) | −0.0129 (9) | 0.0195 (9) | −0.0052 (10) |
Geometric parameters (Å, º) top
N1—C7 | 1.364 (3) | C7—C8 | 1.458 (3) |
N1—C1 | 1.374 (3) | C8—C9 | 1.389 (3) |
N1—H1N | 0.896 (16) | C9—C10 | 1.375 (3) |
N2—C7 | 1.325 (3) | C9—H9 | 0.9300 |
N2—C6 | 1.390 (3) | C10—C11 | 1.367 (3) |
N3—C8 | 1.333 (2) | C10—H10 | 0.9300 |
N3—C12 | 1.340 (3) | C11—C12 | 1.387 (3) |
N4—C13 | 1.325 (3) | C11—H11 | 0.9300 |
N4—C14 | 1.391 (3) | C12—C13 | 1.454 (3) |
N5—C13 | 1.361 (3) | C14—C15 | 1.382 (3) |
N5—C19 | 1.378 (3) | C14—C19 | 1.400 (3) |
N5—H5N | 0.912 (19) | C15—C16 | 1.371 (3) |
C1—C6 | 1.390 (3) | C15—H15 | 0.9300 |
C1—C2 | 1.397 (3) | C16—C17 | 1.387 (3) |
C2—C3 | 1.376 (3) | C16—H16 | 0.9300 |
C2—H2 | 0.9300 | C17—C18 | 1.369 (3) |
C3—C4 | 1.378 (3) | C17—H17 | 0.9300 |
C3—H3 | 0.9300 | C18—C19 | 1.382 (3) |
C4—C5 | 1.375 (3) | C18—H18 | 0.9300 |
C4—H4 | 0.9300 | O1W—H1WA | 0.93 (2) |
C5—C6 | 1.397 (3) | O1W—H1WB | 0.919 (19) |
C5—H5 | 0.9300 | | |
| | | |
C7—N1—C1 | 106.77 (19) | C10—C9—H9 | 121.0 |
C7—N1—H1N | 126.3 (13) | C8—C9—H9 | 121.0 |
C1—N1—H1N | 126.9 (13) | C11—C10—C9 | 120.1 (2) |
C7—N2—C6 | 104.30 (18) | C11—C10—H10 | 119.9 |
C8—N3—C12 | 118.08 (18) | C9—C10—H10 | 119.9 |
C13—N4—C14 | 104.86 (18) | C10—C11—C12 | 118.4 (2) |
C13—N5—C19 | 106.73 (19) | C10—C11—H11 | 120.8 |
C13—N5—H5N | 125.1 (16) | C12—C11—H11 | 120.8 |
C19—N5—H5N | 126.8 (16) | N3—C12—C11 | 122.5 (2) |
N1—C1—C6 | 105.7 (2) | N3—C12—C13 | 115.06 (19) |
N1—C1—C2 | 132.0 (2) | C11—C12—C13 | 122.4 (2) |
C6—C1—C2 | 122.3 (2) | N4—C13—N5 | 113.04 (19) |
C3—C2—C1 | 115.7 (2) | N4—C13—C12 | 126.2 (2) |
C3—C2—H2 | 122.2 | N5—C13—C12 | 120.7 (2) |
C1—C2—H2 | 122.2 | C15—C14—N4 | 130.6 (2) |
C2—C3—C4 | 122.5 (3) | C15—C14—C19 | 120.0 (2) |
C2—C3—H3 | 118.7 | N4—C14—C19 | 109.47 (19) |
C4—C3—H3 | 118.7 | C16—C15—C14 | 117.7 (2) |
C5—C4—C3 | 122.1 (3) | C16—C15—H15 | 121.2 |
C5—C4—H4 | 118.9 | C14—C15—H15 | 121.2 |
C3—C4—H4 | 118.9 | C15—C16—C17 | 121.8 (2) |
C4—C5—C6 | 116.7 (2) | C15—C16—H16 | 119.1 |
C4—C5—H5 | 121.7 | C17—C16—H16 | 119.1 |
C6—C5—H5 | 121.7 | C18—C17—C16 | 121.5 (2) |
N2—C6—C1 | 110.2 (2) | C18—C17—H17 | 119.2 |
N2—C6—C5 | 129.1 (2) | C16—C17—H17 | 119.2 |
C1—C6—C5 | 120.7 (2) | C17—C18—C19 | 116.9 (2) |
N2—C7—N1 | 113.0 (2) | C17—C18—H18 | 121.6 |
N2—C7—C8 | 125.8 (2) | C19—C18—H18 | 121.6 |
N1—C7—C8 | 121.2 (2) | N5—C19—C18 | 132.0 (2) |
N3—C8—C9 | 122.8 (2) | N5—C19—C14 | 105.90 (19) |
N3—C8—C7 | 115.06 (19) | C18—C19—C14 | 122.1 (2) |
C9—C8—C7 | 122.1 (2) | H1WA—O1W—H1WB | 106.9 (18) |
C10—C9—C8 | 118.0 (2) | | |
| | | |
C7—N1—C1—C6 | 0.6 (2) | C9—C10—C11—C12 | 0.7 (4) |
C7—N1—C1—C2 | 178.7 (2) | C8—N3—C12—C11 | 0.5 (3) |
N1—C1—C2—C3 | −179.1 (2) | C8—N3—C12—C13 | −177.63 (19) |
C6—C1—C2—C3 | −1.2 (3) | C10—C11—C12—N3 | −0.4 (4) |
C1—C2—C3—C4 | 0.3 (4) | C10—C11—C12—C13 | 177.6 (2) |
C2—C3—C4—C5 | 0.2 (4) | C14—N4—C13—N5 | 0.1 (3) |
C3—C4—C5—C6 | 0.2 (4) | C14—N4—C13—C12 | −177.0 (2) |
C7—N2—C6—C1 | −0.6 (2) | C19—N5—C13—N4 | 0.2 (3) |
C7—N2—C6—C5 | 179.4 (2) | C19—N5—C13—C12 | 177.5 (2) |
N1—C1—C6—N2 | 0.0 (2) | N3—C12—C13—N4 | 177.1 (2) |
C2—C1—C6—N2 | −178.3 (2) | C11—C12—C13—N4 | −1.0 (4) |
N1—C1—C6—C5 | −180.0 (2) | N3—C12—C13—N5 | 0.2 (3) |
C2—C1—C6—C5 | 1.7 (3) | C11—C12—C13—N5 | −178.0 (2) |
C4—C5—C6—N2 | 178.9 (2) | C13—N4—C14—C15 | 178.9 (3) |
C4—C5—C6—C1 | −1.1 (3) | C13—N4—C14—C19 | −0.4 (3) |
C6—N2—C7—N1 | 1.0 (2) | N4—C14—C15—C16 | 179.9 (3) |
C6—N2—C7—C8 | −178.9 (2) | C19—C14—C15—C16 | −1.0 (4) |
C1—N1—C7—N2 | −1.0 (2) | C14—C15—C16—C17 | 0.2 (4) |
C1—N1—C7—C8 | 178.87 (19) | C15—C16—C17—C18 | 0.6 (4) |
C12—N3—C8—C9 | −1.0 (3) | C16—C17—C18—C19 | −0.6 (4) |
C12—N3—C8—C7 | −179.51 (18) | C13—N5—C19—C18 | 179.8 (2) |
N2—C7—C8—N3 | −171.2 (2) | C13—N5—C19—C14 | −0.5 (2) |
N1—C7—C8—N3 | 8.9 (3) | C17—C18—C19—N5 | 179.6 (2) |
N2—C7—C8—C9 | 10.3 (3) | C17—C18—C19—C14 | −0.2 (4) |
N1—C7—C8—C9 | −169.6 (2) | C15—C14—C19—N5 | −178.8 (2) |
N3—C8—C9—C10 | 1.3 (4) | N4—C14—C19—N5 | 0.5 (3) |
C7—C8—C9—C10 | 179.7 (2) | C15—C14—C19—C18 | 1.0 (4) |
C8—C9—C10—C11 | −1.1 (4) | N4—C14—C19—C18 | −179.7 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1W | 0.90 (2) | 2.13 (2) | 3.019 (3) | 172 (2) |
N5—H5N···O1W | 0.91 (2) | 2.10 (2) | 3.006 (3) | 170 (2) |
O1W—H1WB···N4i | 0.92 (2) | 2.01 (2) | 2.922 (3) | 173 (2) |
O1W—H1WA···N2ii | 0.93 (2) | 2.01 (2) | 2.926 (3) | 167 (2) |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x−1, y, z. |
(II) 2,6-bis(2-benzimidazolyl) pyridine, 1.5 hydrate
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Crystal data top
C19H13N5·1.5H2O | F(000) = 1416 |
Mr = 338.37 | Dx = 1.300 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 18.813 (2) Å | Cell parameters from 154 reflections |
b = 18.417 (2) Å | θ = 3.1–24.5° |
c = 10.322 (2) Å | µ = 0.09 mm−1 |
β = 104.81 (2)° | T = 293 K |
V = 3457.5 (8) Å3 | Prisms, colorless |
Z = 8 | 0.16 × 0.10 × 0.08 mm |
Data collection top
CCD area detector diffractometer | 2514 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.064 |
Graphite monochromator | θmax = 25.0°, θmin = 1.6° |
ϕ and ω scans | h = −21→22 |
17546 measured reflections | k = −21→18 |
6086 independent reflections | l = −12→12 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: geom+difmap |
wR(F2) = 0.087 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.88 | w = 1/[σ2(Fo2) + (0.0202P)2] where P = (Fo2 + 2Fc2)/3 |
6086 reflections | (Δ/σ)max = 0.010 |
501 parameters | Δρmax = 0.16 e Å−3 |
9 restraints | Δρmin = −0.16 e Å−3 |
Crystal data top
C19H13N5·1.5H2O | V = 3457.5 (8) Å3 |
Mr = 338.37 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 18.813 (2) Å | µ = 0.09 mm−1 |
b = 18.417 (2) Å | T = 293 K |
c = 10.322 (2) Å | 0.16 × 0.10 × 0.08 mm |
β = 104.81 (2)° | |
Data collection top
CCD area detector diffractometer | 2514 reflections with I > 2σ(I) |
17546 measured reflections | Rint = 0.064 |
6086 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.046 | 9 restraints |
wR(F2) = 0.087 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.88 | Δρmax = 0.16 e Å−3 |
6086 reflections | Δρmin = −0.16 e Å−3 |
501 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1A | 0.30995 (14) | 0.72072 (15) | 0.2107 (3) | 0.0474 (7) | |
H1NA | 0.3083 (15) | 0.6699 (10) | 0.202 (3) | 0.069 (11)* | |
N2A | 0.34517 (14) | 0.82498 (13) | 0.3208 (3) | 0.0492 (7) | |
N3A | 0.38671 (13) | 0.63784 (13) | 0.4176 (2) | 0.0458 (7) | |
N4A | 0.42533 (13) | 0.46588 (14) | 0.5866 (3) | 0.0510 (7) | |
N5A | 0.36874 (15) | 0.49305 (16) | 0.3743 (3) | 0.0523 (8) | |
H5NA | 0.3517 (16) | 0.5179 (15) | 0.300 (2) | 0.083 (14)* | |
C1A | 0.27481 (18) | 0.77491 (18) | 0.1273 (3) | 0.0480 (8) | |
C2A | 0.22814 (17) | 0.77360 (18) | 0.0006 (3) | 0.0577 (9) | |
H2A | 0.2138 | 0.7301 | −0.0442 | 0.069* | |
C3A | 0.20347 (18) | 0.8394 (2) | −0.0570 (3) | 0.0660 (10) | |
H3A | 0.1720 | 0.8406 | −0.1427 | 0.079* | |
C4A | 0.22502 (19) | 0.90444 (19) | 0.0116 (4) | 0.0673 (11) | |
H4A | 0.2076 | 0.9482 | −0.0293 | 0.081* | |
C5A | 0.27151 (18) | 0.90497 (17) | 0.1383 (4) | 0.0617 (10) | |
H5A | 0.2855 | 0.9484 | 0.1836 | 0.074* | |
C6A | 0.29696 (17) | 0.83915 (18) | 0.1967 (4) | 0.0494 (9) | |
C7A | 0.35102 (17) | 0.75324 (17) | 0.3239 (3) | 0.0439 (8) | |
C8A | 0.39467 (16) | 0.70999 (17) | 0.4347 (3) | 0.0439 (8) | |
C9A | 0.43865 (17) | 0.74057 (17) | 0.5495 (3) | 0.0529 (9) | |
H9A | 0.4443 | 0.7907 | 0.5573 | 0.064* | |
C10A | 0.47390 (16) | 0.69581 (17) | 0.6520 (3) | 0.0576 (10) | |
H10A | 0.5040 | 0.7153 | 0.7300 | 0.069* | |
C11A | 0.46443 (16) | 0.62138 (17) | 0.6384 (3) | 0.0508 (9) | |
H11A | 0.4868 | 0.5899 | 0.7072 | 0.061* | |
C12A | 0.42064 (16) | 0.59552 (16) | 0.5191 (3) | 0.0427 (8) | |
C13A | 0.40619 (16) | 0.51745 (17) | 0.4960 (3) | 0.0433 (8) | |
C14A | 0.39762 (18) | 0.40288 (17) | 0.5167 (4) | 0.0522 (9) | |
C15A | 0.40093 (19) | 0.33182 (19) | 0.5640 (4) | 0.0745 (12) | |
H15A | 0.4232 | 0.3206 | 0.6529 | 0.089* | |
C16A | 0.3699 (2) | 0.2793 (2) | 0.4736 (5) | 0.0906 (14) | |
H16A | 0.3712 | 0.2312 | 0.5019 | 0.109* | |
C17A | 0.3367 (2) | 0.2957 (2) | 0.3416 (5) | 0.0910 (15) | |
H17A | 0.3167 | 0.2583 | 0.2832 | 0.109* | |
C18A | 0.33213 (18) | 0.3659 (2) | 0.2934 (4) | 0.0746 (12) | |
H18A | 0.3098 | 0.3768 | 0.2043 | 0.090* | |
C19A | 0.36268 (17) | 0.41893 (18) | 0.3852 (4) | 0.0538 (9) | |
N1B | −0.10238 (14) | 0.76643 (14) | −0.1618 (3) | 0.0447 (7) | |
H1NB | −0.0923 (14) | 0.7419 (13) | −0.084 (2) | 0.057 (10)* | |
N2B | −0.08517 (13) | 0.80534 (12) | −0.3568 (2) | 0.0489 (7) | |
N3B | 0.01568 (12) | 0.67573 (12) | −0.1174 (2) | 0.0410 (6) | |
N4B | 0.13112 (13) | 0.53523 (13) | 0.0697 (2) | 0.0503 (7) | |
N5B | 0.02814 (15) | 0.58651 (14) | 0.0956 (3) | 0.0459 (7) | |
H5NB | −0.0071 (13) | 0.6203 (11) | 0.084 (3) | 0.057 (10)* | |
C1B | −0.15837 (16) | 0.81467 (15) | −0.2106 (3) | 0.0415 (8) | |
C2B | −0.21672 (16) | 0.83849 (16) | −0.1628 (3) | 0.0523 (9) | |
H2B | −0.2243 | 0.8215 | −0.0826 | 0.063* | |
C3B | −0.26274 (18) | 0.88858 (16) | −0.2405 (4) | 0.0615 (10) | |
H3B | −0.3023 | 0.9062 | −0.2114 | 0.074* | |
C4B | −0.25232 (19) | 0.91385 (17) | −0.3608 (4) | 0.0708 (11) | |
H4B | −0.2848 | 0.9478 | −0.4101 | 0.085* | |
C5B | −0.19484 (18) | 0.88942 (16) | −0.4080 (3) | 0.0637 (10) | |
H5B | −0.1878 | 0.9064 | −0.4886 | 0.076* | |
C6B | −0.14752 (17) | 0.83865 (15) | −0.3323 (3) | 0.0464 (8) | |
C7B | −0.06129 (16) | 0.76286 (15) | −0.2522 (3) | 0.0415 (8) | |
C8B | 0.00376 (16) | 0.71590 (15) | −0.2282 (3) | 0.0411 (8) | |
C9B | 0.04738 (16) | 0.71263 (15) | −0.3180 (3) | 0.0529 (9) | |
H9B | 0.0378 | 0.7420 | −0.3938 | 0.063* | |
C10B | 0.10536 (17) | 0.66453 (17) | −0.2914 (3) | 0.0570 (9) | |
H10B | 0.1361 | 0.6614 | −0.3489 | 0.068* | |
C11B | 0.11774 (16) | 0.62090 (16) | −0.1788 (3) | 0.0526 (9) | |
H11B | 0.1558 | 0.5872 | −0.1605 | 0.063* | |
C12B | 0.07186 (16) | 0.62881 (15) | −0.0942 (3) | 0.0416 (8) | |
C13B | 0.07954 (17) | 0.58350 (15) | 0.0238 (3) | 0.0428 (8) | |
C14B | 0.11148 (17) | 0.50421 (16) | 0.1785 (3) | 0.0454 (8) | |
C15B | 0.14423 (18) | 0.44798 (16) | 0.2628 (4) | 0.0653 (10) | |
H15B | 0.1866 | 0.4255 | 0.2522 | 0.078* | |
C16B | 0.1121 (2) | 0.42672 (18) | 0.3620 (4) | 0.0736 (11) | |
H16B | 0.1333 | 0.3895 | 0.4200 | 0.088* | |
C17B | 0.0481 (2) | 0.46005 (18) | 0.3774 (3) | 0.0710 (11) | |
H17B | 0.0275 | 0.4443 | 0.4453 | 0.085* | |
C18B | 0.01501 (19) | 0.51516 (16) | 0.2955 (3) | 0.0614 (10) | |
H18B | −0.0274 | 0.5375 | 0.3064 | 0.074* | |
C19B | 0.04727 (17) | 0.53597 (16) | 0.1961 (3) | 0.0452 (8) | |
O1W | 0.28800 (16) | 0.56690 (13) | 0.1324 (2) | 0.0625 (7) | |
H1WA | 0.3135 (16) | 0.5598 (17) | 0.071 (3) | 0.112 (16)* | |
H1WB | 0.2410 (12) | 0.554 (2) | 0.097 (4) | 0.17 (2)* | |
O2W | 0.38881 (16) | 0.94776 (13) | 0.4815 (3) | 0.0664 (7) | |
H2WA | 0.3774 (17) | 0.9079 (13) | 0.433 (3) | 0.105 (16)* | |
H2WB | 0.4337 (15) | 0.949 (2) | 0.533 (4) | 0.22 (3)* | |
O3W | 0.46666 (18) | 0.44497 (16) | 0.8636 (3) | 0.0970 (9) | |
H3WA | 0.461 (2) | 0.4543 (19) | 0.778 (2) | 0.124 (19)* | |
H3WB | 0.442 (3) | 0.474 (2) | 0.905 (4) | 0.25 (3)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1A | 0.0539 (19) | 0.0426 (18) | 0.0510 (19) | 0.0000 (16) | 0.0230 (15) | 0.0001 (17) |
N2A | 0.0549 (19) | 0.0400 (17) | 0.057 (2) | −0.0045 (15) | 0.0222 (16) | −0.0046 (15) |
N3A | 0.0456 (18) | 0.0427 (17) | 0.0530 (19) | −0.0004 (14) | 0.0196 (15) | −0.0008 (14) |
N4A | 0.0544 (18) | 0.0488 (17) | 0.0524 (19) | 0.0080 (15) | 0.0183 (15) | 0.0059 (15) |
N5A | 0.0512 (19) | 0.051 (2) | 0.051 (2) | 0.0061 (16) | 0.0070 (17) | −0.0022 (18) |
C1A | 0.049 (2) | 0.053 (2) | 0.048 (2) | 0.0049 (19) | 0.0231 (19) | 0.005 (2) |
C2A | 0.058 (2) | 0.063 (2) | 0.057 (3) | 0.004 (2) | 0.024 (2) | 0.003 (2) |
C3A | 0.057 (2) | 0.085 (3) | 0.058 (3) | 0.017 (2) | 0.020 (2) | 0.016 (2) |
C4A | 0.060 (3) | 0.068 (3) | 0.080 (3) | 0.016 (2) | 0.030 (2) | 0.023 (2) |
C5A | 0.059 (3) | 0.053 (2) | 0.079 (3) | 0.000 (2) | 0.030 (2) | 0.007 (2) |
C6A | 0.046 (2) | 0.046 (2) | 0.063 (3) | −0.0005 (19) | 0.0265 (19) | 0.004 (2) |
C7A | 0.042 (2) | 0.049 (2) | 0.044 (2) | −0.0041 (18) | 0.0188 (17) | −0.0026 (18) |
C8A | 0.043 (2) | 0.052 (2) | 0.040 (2) | −0.0026 (18) | 0.0161 (17) | −0.0024 (18) |
C9A | 0.051 (2) | 0.049 (2) | 0.060 (2) | −0.0032 (18) | 0.0169 (19) | −0.0026 (19) |
C10A | 0.049 (2) | 0.063 (2) | 0.059 (3) | −0.007 (2) | 0.0101 (19) | −0.014 (2) |
C11A | 0.045 (2) | 0.060 (2) | 0.047 (2) | 0.0034 (18) | 0.0112 (18) | −0.0015 (19) |
C12A | 0.040 (2) | 0.049 (2) | 0.042 (2) | 0.0074 (17) | 0.0162 (17) | −0.0016 (18) |
C13A | 0.040 (2) | 0.047 (2) | 0.043 (2) | 0.0032 (17) | 0.0115 (17) | −0.0040 (18) |
C14A | 0.049 (2) | 0.041 (2) | 0.072 (3) | 0.0036 (18) | 0.027 (2) | −0.005 (2) |
C15A | 0.082 (3) | 0.052 (2) | 0.099 (3) | 0.005 (2) | 0.041 (3) | 0.004 (2) |
C16A | 0.086 (4) | 0.052 (3) | 0.143 (5) | 0.004 (3) | 0.047 (3) | −0.001 (3) |
C17A | 0.060 (3) | 0.061 (3) | 0.147 (5) | −0.010 (2) | 0.018 (3) | −0.030 (3) |
C18A | 0.051 (3) | 0.068 (3) | 0.094 (3) | 0.007 (2) | 0.000 (2) | −0.025 (3) |
C19A | 0.043 (2) | 0.049 (2) | 0.070 (3) | 0.0025 (19) | 0.015 (2) | −0.009 (2) |
N1B | 0.0435 (17) | 0.0537 (18) | 0.0399 (18) | 0.0033 (14) | 0.0165 (15) | 0.0058 (15) |
N2B | 0.0468 (17) | 0.0524 (17) | 0.0514 (18) | 0.0016 (14) | 0.0199 (15) | 0.0113 (14) |
N3B | 0.0382 (16) | 0.0471 (16) | 0.0399 (17) | −0.0016 (13) | 0.0142 (13) | 0.0011 (13) |
N4B | 0.0454 (18) | 0.0560 (17) | 0.0497 (19) | 0.0121 (15) | 0.0126 (15) | 0.0028 (14) |
N5B | 0.0452 (18) | 0.0474 (18) | 0.0485 (19) | 0.0116 (15) | 0.0183 (15) | 0.0065 (14) |
C1B | 0.038 (2) | 0.0379 (19) | 0.050 (2) | −0.0001 (16) | 0.0146 (17) | −0.0033 (16) |
C2B | 0.044 (2) | 0.056 (2) | 0.060 (2) | −0.0034 (18) | 0.0201 (19) | −0.0078 (18) |
C3B | 0.049 (2) | 0.050 (2) | 0.088 (3) | 0.0077 (19) | 0.023 (2) | −0.005 (2) |
C4B | 0.058 (3) | 0.059 (2) | 0.100 (3) | 0.0172 (19) | 0.028 (2) | 0.025 (2) |
C5B | 0.059 (3) | 0.063 (2) | 0.073 (3) | 0.010 (2) | 0.023 (2) | 0.023 (2) |
C6B | 0.043 (2) | 0.044 (2) | 0.053 (2) | 0.0026 (17) | 0.0145 (18) | 0.0105 (17) |
C7B | 0.039 (2) | 0.046 (2) | 0.043 (2) | −0.0030 (16) | 0.0172 (17) | 0.0026 (16) |
C8B | 0.036 (2) | 0.047 (2) | 0.043 (2) | −0.0009 (16) | 0.0157 (16) | 0.0013 (16) |
C9B | 0.049 (2) | 0.064 (2) | 0.050 (2) | −0.0006 (19) | 0.0198 (19) | 0.0090 (18) |
C10B | 0.046 (2) | 0.076 (2) | 0.057 (2) | 0.002 (2) | 0.0271 (19) | 0.001 (2) |
C11B | 0.047 (2) | 0.062 (2) | 0.053 (2) | 0.0128 (18) | 0.0211 (19) | 0.0038 (18) |
C12B | 0.040 (2) | 0.045 (2) | 0.041 (2) | −0.0008 (16) | 0.0138 (17) | −0.0020 (16) |
C13B | 0.044 (2) | 0.047 (2) | 0.040 (2) | −0.0011 (17) | 0.0164 (17) | −0.0062 (17) |
C14B | 0.046 (2) | 0.042 (2) | 0.043 (2) | 0.0055 (17) | 0.0030 (17) | −0.0016 (17) |
C15B | 0.063 (3) | 0.057 (2) | 0.070 (3) | 0.013 (2) | 0.005 (2) | 0.005 (2) |
C16B | 0.095 (3) | 0.061 (3) | 0.054 (3) | −0.003 (2) | −0.003 (2) | 0.013 (2) |
C17B | 0.090 (3) | 0.071 (3) | 0.053 (3) | −0.010 (2) | 0.021 (2) | 0.007 (2) |
C18B | 0.074 (3) | 0.056 (2) | 0.056 (3) | 0.004 (2) | 0.021 (2) | 0.0075 (19) |
C19B | 0.050 (2) | 0.048 (2) | 0.038 (2) | 0.0002 (17) | 0.0110 (17) | 0.0040 (17) |
O1W | 0.0543 (17) | 0.0759 (17) | 0.0548 (17) | −0.0043 (15) | 0.0097 (15) | −0.0097 (13) |
O2W | 0.066 (2) | 0.0614 (18) | 0.071 (2) | −0.0071 (14) | 0.0160 (15) | −0.0119 (15) |
O3W | 0.111 (3) | 0.114 (2) | 0.059 (2) | 0.0121 (19) | 0.0085 (19) | −0.004 (2) |
Geometric parameters (Å, º) top
N1A—C7A | 1.363 (3) | N2B—C7B | 1.316 (3) |
N1A—C1A | 1.372 (4) | N2B—C6B | 1.403 (3) |
N1A—H1NA | 0.939 (18) | N3B—C8B | 1.332 (3) |
N2A—C7A | 1.325 (3) | N3B—C12B | 1.339 (3) |
N2A—C6A | 1.392 (4) | N4B—C13B | 1.312 (3) |
N3A—C12A | 1.331 (3) | N4B—C14B | 1.392 (3) |
N3A—C8A | 1.344 (3) | N5B—C13B | 1.361 (3) |
N4A—C13A | 1.317 (3) | N5B—C19B | 1.371 (3) |
N4A—C14A | 1.395 (3) | N5B—H5NB | 0.895 (17) |
N5A—C13A | 1.351 (4) | C1B—C2B | 1.385 (3) |
N5A—C19A | 1.377 (4) | C1B—C6B | 1.395 (3) |
N5A—H5NA | 0.876 (19) | C2B—C3B | 1.374 (4) |
C1A—C2A | 1.376 (4) | C2B—H2B | 0.9300 |
C1A—C6A | 1.391 (4) | C3B—C4B | 1.385 (4) |
C2A—C3A | 1.377 (4) | C3B—H3B | 0.9300 |
C2A—H2A | 0.9300 | C4B—C5B | 1.371 (4) |
C3A—C4A | 1.397 (4) | C4B—H4B | 0.9300 |
C3A—H3A | 0.9300 | C5B—C6B | 1.386 (4) |
C4A—C5A | 1.375 (4) | C5B—H5B | 0.9300 |
C4A—H4A | 0.9300 | C7B—C8B | 1.467 (3) |
C5A—C6A | 1.384 (4) | C8B—C9B | 1.387 (3) |
C5A—H5A | 0.9300 | C9B—C10B | 1.377 (3) |
C7A—C8A | 1.462 (4) | C9B—H9B | 0.9300 |
C8A—C9A | 1.380 (4) | C10B—C11B | 1.382 (3) |
C9A—C10A | 1.371 (4) | C10B—H10B | 0.9300 |
C9A—H9A | 0.9300 | C11B—C12B | 1.384 (3) |
C10A—C11A | 1.385 (3) | C11B—H11B | 0.9300 |
C10A—H10A | 0.9300 | C12B—C13B | 1.453 (4) |
C11A—C12A | 1.379 (4) | C14B—C15B | 1.391 (4) |
C11A—H11A | 0.9300 | C14B—C19B | 1.395 (3) |
C12A—C13A | 1.471 (4) | C15B—C16B | 1.373 (4) |
C14A—C19A | 1.380 (4) | C15B—H15B | 0.9300 |
C14A—C15A | 1.393 (4) | C16B—C17B | 1.396 (4) |
C15A—C16A | 1.367 (5) | C16B—H16B | 0.9300 |
C15A—H15A | 0.9300 | C17B—C18B | 1.365 (4) |
C16A—C17A | 1.380 (5) | C17B—H17B | 0.9300 |
C16A—H16A | 0.9300 | C18B—C19B | 1.373 (4) |
C17A—C18A | 1.379 (4) | C18B—H18B | 0.9300 |
C17A—H17A | 0.9300 | O1W—H1WA | 0.90 (2) |
C18A—C19A | 1.380 (4) | O1W—H1WB | 0.90 (2) |
C18A—H18A | 0.9300 | O2W—H2WA | 0.88 (2) |
N1B—C7B | 1.357 (3) | O2W—H2WB | 0.87 (2) |
N1B—C1B | 1.372 (3) | O3W—H3WA | 0.88 (2) |
N1B—H1NB | 0.901 (17) | O3W—H3WB | 0.89 (5) |
| | | |
C7A—N1A—C1A | 107.1 (3) | C1B—N1B—H1NB | 128.3 (17) |
C7A—N1A—H1NA | 121.1 (18) | C7B—N2B—C6B | 103.8 (2) |
C1A—N1A—H1NA | 131.7 (18) | C8B—N3B—C12B | 117.6 (2) |
C7A—N2A—C6A | 103.8 (3) | C13B—N4B—C14B | 104.2 (2) |
C12A—N3A—C8A | 117.4 (3) | C13B—N5B—C19B | 107.4 (3) |
C13A—N4A—C14A | 103.6 (3) | C13B—N5B—H5NB | 124.1 (17) |
C13A—N5A—C19A | 106.7 (3) | C19B—N5B—H5NB | 128.0 (17) |
C13A—N5A—H5NA | 129 (2) | N1B—C1B—C2B | 132.8 (3) |
C19A—N5A—H5NA | 125 (2) | N1B—C1B—C6B | 105.1 (3) |
N1A—C1A—C2A | 132.2 (3) | C2B—C1B—C6B | 122.1 (3) |
N1A—C1A—C6A | 105.2 (3) | C3B—C2B—C1B | 116.3 (3) |
C2A—C1A—C6A | 122.6 (3) | C3B—C2B—H2B | 121.8 |
C1A—C2A—C3A | 117.2 (3) | C1B—C2B—H2B | 121.8 |
C1A—C2A—H2A | 121.4 | C2B—C3B—C4B | 122.4 (3) |
C3A—C2A—H2A | 121.4 | C2B—C3B—H3B | 118.8 |
C2A—C3A—C4A | 120.9 (3) | C4B—C3B—H3B | 118.8 |
C2A—C3A—H3A | 119.6 | C5B—C4B—C3B | 120.9 (3) |
C4A—C3A—H3A | 119.6 | C5B—C4B—H4B | 119.6 |
C5A—C4A—C3A | 121.3 (3) | C3B—C4B—H4B | 119.6 |
C5A—C4A—H4A | 119.4 | C4B—C5B—C6B | 118.2 (3) |
C3A—C4A—H4A | 119.4 | C4B—C5B—H5B | 120.9 |
C4A—C5A—C6A | 118.2 (3) | C6B—C5B—H5B | 120.9 |
C4A—C5A—H5A | 120.9 | C5B—C6B—C1B | 120.0 (3) |
C6A—C5A—H5A | 120.9 | C5B—C6B—N2B | 129.8 (3) |
C5A—C6A—C1A | 119.7 (3) | C1B—C6B—N2B | 110.2 (3) |
C5A—C6A—N2A | 129.5 (3) | N2B—C7B—N1B | 113.6 (3) |
C1A—C6A—N2A | 110.7 (3) | N2B—C7B—C8B | 125.8 (3) |
N2A—C7A—N1A | 113.1 (3) | N1B—C7B—C8B | 120.6 (3) |
N2A—C7A—C8A | 126.0 (3) | N3B—C8B—C9B | 123.4 (3) |
N1A—C7A—C8A | 120.9 (3) | N3B—C8B—C7B | 115.0 (3) |
N3A—C8A—C9A | 122.6 (3) | C9B—C8B—C7B | 121.5 (3) |
N3A—C8A—C7A | 114.5 (3) | C10B—C9B—C8B | 117.9 (3) |
C9A—C8A—C7A | 122.9 (3) | C10B—C9B—H9B | 121.0 |
C10A—C9A—C8A | 118.8 (3) | C8B—C9B—H9B | 121.0 |
C10A—C9A—H9A | 120.6 | C9B—C10B—C11B | 119.8 (3) |
C8A—C9A—H9A | 120.6 | C9B—C10B—H10B | 120.1 |
C9A—C10A—C11A | 119.5 (3) | C11B—C10B—H10B | 120.1 |
C9A—C10A—H10A | 120.2 | C10B—C11B—C12B | 118.1 (3) |
C11A—C10A—H10A | 120.2 | C10B—C11B—H11B | 121.0 |
C12A—C11A—C10A | 117.7 (3) | C12B—C11B—H11B | 121.0 |
C12A—C11A—H11A | 121.2 | N3B—C12B—C11B | 123.1 (3) |
C10A—C11A—H11A | 121.2 | N3B—C12B—C13B | 115.2 (3) |
N3A—C12A—C11A | 123.9 (3) | C11B—C12B—C13B | 121.6 (3) |
N3A—C12A—C13A | 114.4 (3) | N4B—C13B—N5B | 113.2 (3) |
C11A—C12A—C13A | 121.7 (3) | N4B—C13B—C12B | 126.7 (3) |
N4A—C13A—N5A | 113.8 (3) | N5B—C13B—C12B | 120.1 (3) |
N4A—C13A—C12A | 125.8 (3) | C15B—C14B—N4B | 130.1 (3) |
N5A—C13A—C12A | 120.4 (3) | C15B—C14B—C19B | 119.4 (3) |
C19A—C14A—C15A | 120.9 (4) | N4B—C14B—C19B | 110.5 (3) |
C19A—C14A—N4A | 110.6 (3) | C16B—C15B—C14B | 118.0 (3) |
C15A—C14A—N4A | 128.5 (4) | C16B—C15B—H15B | 121.0 |
C16A—C15A—C14A | 116.9 (4) | C14B—C15B—H15B | 121.0 |
C16A—C15A—H15A | 121.5 | C15B—C16B—C17B | 121.1 (3) |
C14A—C15A—H15A | 121.5 | C15B—C16B—H16B | 119.5 |
C15A—C16A—C17A | 121.7 (4) | C17B—C16B—H16B | 119.5 |
C15A—C16A—H16A | 119.2 | C18B—C17B—C16B | 121.8 (3) |
C17A—C16A—H16A | 119.2 | C18B—C17B—H17B | 119.1 |
C18A—C17A—C16A | 122.2 (4) | C16B—C17B—H17B | 119.1 |
C18A—C17A—H17A | 118.9 | C17B—C18B—C19B | 116.8 (3) |
C16A—C17A—H17A | 118.9 | C17B—C18B—H18B | 121.6 |
C17A—C18A—C19A | 116.0 (4) | C19B—C18B—H18B | 121.6 |
C17A—C18A—H18A | 122.0 | N5B—C19B—C18B | 132.3 (3) |
C19A—C18A—H18A | 122.0 | N5B—C19B—C14B | 104.8 (3) |
N5A—C19A—C18A | 132.4 (4) | C18B—C19B—C14B | 122.9 (3) |
N5A—C19A—C14A | 105.3 (3) | H1WA—O1W—H1WB | 109 (2) |
C18A—C19A—C14A | 122.2 (3) | H2WA—O2W—H2WB | 114 (3) |
C7B—N1B—C1B | 107.3 (3) | H3WA—O3W—H3WB | 115 (3) |
C7B—N1B—H1NB | 124.3 (17) | | |
| | | |
C7A—N1A—C1A—C2A | 178.6 (3) | C7B—N1B—C1B—C2B | 178.8 (3) |
C7A—N1A—C1A—C6A | −0.2 (3) | C7B—N1B—C1B—C6B | −0.2 (3) |
N1A—C1A—C2A—C3A | −178.5 (3) | N1B—C1B—C2B—C3B | 179.8 (3) |
C6A—C1A—C2A—C3A | 0.1 (5) | C6B—C1B—C2B—C3B | −1.5 (4) |
C1A—C2A—C3A—C4A | −0.3 (5) | C1B—C2B—C3B—C4B | 0.5 (5) |
C2A—C3A—C4A—C5A | 0.1 (5) | C2B—C3B—C4B—C5B | 0.1 (5) |
C3A—C4A—C5A—C6A | 0.3 (5) | C3B—C4B—C5B—C6B | 0.1 (5) |
C4A—C5A—C6A—C1A | −0.5 (4) | C4B—C5B—C6B—C1B | −1.0 (5) |
C4A—C5A—C6A—N2A | 178.4 (3) | C4B—C5B—C6B—N2B | −179.8 (3) |
N1A—C1A—C6A—C5A | 179.2 (3) | N1B—C1B—C6B—C5B | −179.2 (3) |
C2A—C1A—C6A—C5A | 0.3 (5) | C2B—C1B—C6B—C5B | 1.7 (5) |
N1A—C1A—C6A—N2A | 0.2 (3) | N1B—C1B—C6B—N2B | −0.2 (3) |
C2A—C1A—C6A—N2A | −178.8 (3) | C2B—C1B—C6B—N2B | −179.3 (2) |
C7A—N2A—C6A—C5A | −179.0 (3) | C7B—N2B—C6B—C5B | 179.3 (3) |
C7A—N2A—C6A—C1A | −0.1 (3) | C7B—N2B—C6B—C1B | 0.5 (3) |
C6A—N2A—C7A—N1A | −0.1 (3) | C6B—N2B—C7B—N1B | −0.6 (3) |
C6A—N2A—C7A—C8A | −178.8 (3) | C6B—N2B—C7B—C8B | −179.5 (3) |
C1A—N1A—C7A—N2A | 0.2 (3) | C1B—N1B—C7B—N2B | 0.5 (3) |
C1A—N1A—C7A—C8A | 179.0 (2) | C1B—N1B—C7B—C8B | 179.5 (3) |
C12A—N3A—C8A—C9A | 2.9 (4) | C12B—N3B—C8B—C9B | −1.6 (4) |
C12A—N3A—C8A—C7A | −175.1 (2) | C12B—N3B—C8B—C7B | 176.3 (2) |
N2A—C7A—C8A—N3A | 174.8 (3) | N2B—C7B—C8B—N3B | −177.7 (3) |
N1A—C7A—C8A—N3A | −3.9 (4) | N1B—C7B—C8B—N3B | 3.4 (4) |
N2A—C7A—C8A—C9A | −3.2 (5) | N2B—C7B—C8B—C9B | 0.2 (5) |
N1A—C7A—C8A—C9A | 178.1 (3) | N1B—C7B—C8B—C9B | −178.6 (3) |
N3A—C8A—C9A—C10A | −2.0 (5) | N3B—C8B—C9B—C10B | 0.9 (4) |
C7A—C8A—C9A—C10A | 175.8 (3) | C7B—C8B—C9B—C10B | −176.9 (3) |
C8A—C9A—C10A—C11A | −0.3 (5) | C8B—C9B—C10B—C11B | 0.8 (4) |
C9A—C10A—C11A—C12A | 1.5 (4) | C9B—C10B—C11B—C12B | −1.7 (5) |
C8A—N3A—C12A—C11A | −1.6 (4) | C8B—N3B—C12B—C11B | 0.6 (4) |
C8A—N3A—C12A—C13A | 176.8 (2) | C8B—N3B—C12B—C13B | −176.5 (2) |
C10A—C11A—C12A—N3A | −0.6 (5) | C10B—C11B—C12B—N3B | 1.1 (4) |
C10A—C11A—C12A—C13A | −178.9 (3) | C10B—C11B—C12B—C13B | 178.0 (3) |
C14A—N4A—C13A—N5A | −0.1 (3) | C14B—N4B—C13B—N5B | 0.5 (3) |
C14A—N4A—C13A—C12A | 178.3 (3) | C14B—N4B—C13B—C12B | −176.6 (3) |
C19A—N5A—C13A—N4A | −0.1 (4) | C19B—N5B—C13B—N4B | −0.4 (3) |
C19A—N5A—C13A—C12A | −178.6 (3) | C19B—N5B—C13B—C12B | 177.0 (3) |
N3A—C12A—C13A—N4A | −170.6 (3) | N3B—C12B—C13B—N4B | −177.8 (3) |
C11A—C12A—C13A—N4A | 7.8 (5) | C11B—C12B—C13B—N4B | 5.0 (5) |
N3A—C12A—C13A—N5A | 7.7 (4) | N3B—C12B—C13B—N5B | 5.2 (4) |
C11A—C12A—C13A—N5A | −173.9 (3) | C11B—C12B—C13B—N5B | −171.9 (3) |
C13A—N4A—C14A—C19A | 0.2 (3) | C13B—N4B—C14B—C15B | 177.2 (3) |
C13A—N4A—C14A—C15A | −178.9 (3) | C13B—N4B—C14B—C19B | −0.5 (3) |
C19A—C14A—C15A—C16A | 1.7 (5) | N4B—C14B—C15B—C16B | −178.5 (3) |
N4A—C14A—C15A—C16A | −179.3 (3) | C19B—C14B—C15B—C16B | −1.0 (5) |
C14A—C15A—C16A—C17A | −0.1 (6) | C14B—C15B—C16B—C17B | 0.5 (5) |
C15A—C16A—C17A—C18A | −0.6 (7) | C15B—C16B—C17B—C18B | −0.3 (6) |
C16A—C17A—C18A—C19A | −0.2 (6) | C16B—C17B—C18B—C19B | 0.6 (5) |
C13A—N5A—C19A—C18A | −178.0 (3) | C13B—N5B—C19B—C18B | −178.9 (3) |
C13A—N5A—C19A—C14A | 0.2 (3) | C13B—N5B—C19B—C14B | 0.0 (3) |
C17A—C18A—C19A—N5A | 179.7 (3) | C17B—C18B—C19B—N5B | 177.7 (3) |
C17A—C18A—C19A—C14A | 1.8 (5) | C17B—C18B—C19B—C14B | −1.1 (5) |
C15A—C14A—C19A—N5A | 178.9 (3) | C15B—C14B—C19B—N5B | −177.7 (3) |
N4A—C14A—C19A—N5A | −0.3 (4) | N4B—C14B—C19B—N5B | 0.3 (3) |
C15A—C14A—C19A—C18A | −2.6 (5) | C15B—C14B—C19B—C18B | 1.3 (5) |
N4A—C14A—C19A—C18A | 178.2 (3) | N4B—C14B—C19B—C18B | 179.3 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1NA···O1W | 0.94 (2) | 2.03 (2) | 2.946 (4) | 164 (3) |
N5A—H5NA···O1W | 0.88 (2) | 2.05 (2) | 2.907 (4) | 166 (3) |
N1B—H1NB···N2Bi | 0.90 (2) | 2.47 (2) | 3.353 (4) | 167 (2) |
N5B—H5NB···N2Bi | 0.89 (2) | 2.21 (2) | 3.048 (3) | 157 (2) |
O1W—H1WA···O2Wii | 0.90 (3) | 1.88 (3) | 2.758 (4) | 164 (3) |
O1W—H1WB···N4B | 0.90 (3) | 2.04 (3) | 2.914 (4) | 163 (3) |
O2W—H2WA···N2A | 0.88 (3) | 1.92 (3) | 2.800 (4) | 175 (3) |
O2W—H2WB···O3Wiii | 0.87 (3) | 1.91 (3) | 2.780 (4) | 176 (4) |
O3W—H3WA···N4A | 0.88 (2) | 1.93 (2) | 2.791 (4) | 166 (4) |
O3W—H3WB···O2Wi | 0.89 (5) | 2.03 (5) | 2.905 (4) | 171 (4) |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x, −y+3/2, z−1/2; (iii) −x+1, y+1/2, −z+3/2. |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | C19H13N5·H2O | C19H13N5·1.5H2O |
Mr | 329.36 | 338.37 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, P21/c |
Temperature (K) | 293 | 293 |
a, b, c (Å) | 7.522 (2), 20.367 (3), 11.264 (2) | 18.813 (2), 18.417 (2), 10.322 (2) |
β (°) | 103.76 (2) | 104.81 (2) |
V (Å3) | 1676.2 (6) | 3457.5 (8) |
Z | 4 | 8 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.09 | 0.09 |
Crystal size (mm) | 0.18 × 0.12 × 0.10 | 0.16 × 0.10 × 0.08 |
|
Data collection |
Diffractometer | CCD area detector diffractometer | CCD area detector diffractometer |
Absorption correction | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8338, 2924, 1660 | 17546, 6086, 2514 |
Rint | 0.045 | 0.064 |
(sin θ/λ)max (Å−1) | 0.595 | 0.595 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.119, 0.91 | 0.046, 0.087, 0.88 |
No. of reflections | 2924 | 6086 |
No. of parameters | 243 | 501 |
No. of restraints | 3 | 9 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.16, −0.15 | 0.16, −0.16 |
Selected geometric parameters (Å, º) for (I) topN1—C7 | 1.364 (3) | N4—C13 | 1.325 (3) |
N1—C1 | 1.374 (3) | N4—C14 | 1.391 (3) |
N2—C7 | 1.325 (3) | N5—C13 | 1.361 (3) |
N2—C6 | 1.390 (3) | N5—C19 | 1.378 (3) |
N3—C8 | 1.333 (2) | C1—C6 | 1.390 (3) |
N3—C12 | 1.340 (3) | | |
| | | |
N2—C7—C8—N3 | −171.2 (2) | N3—C12—C13—N4 | 177.1 (2) |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1W | 0.90 (2) | 2.13 (2) | 3.019 (3) | 172 (2) |
N5—H5N···O1W | 0.91 (2) | 2.10 (2) | 3.006 (3) | 170 (2) |
O1W—H1WB···N4i | 0.92 (2) | 2.01 (2) | 2.922 (3) | 173 (2) |
O1W—H1WA···N2ii | 0.93 (2) | 2.01 (2) | 2.926 (3) | 167 (2) |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x−1, y, z. |
Selected bond lengths (Å) for (II) topN1A—C7A | 1.363 (3) | N1B—C7B | 1.357 (3) |
N1A—C1A | 1.372 (4) | N1B—C1B | 1.372 (3) |
N2A—C7A | 1.325 (3) | N2B—C7B | 1.316 (3) |
N2A—C6A | 1.392 (4) | N2B—C6B | 1.403 (3) |
N3A—C12A | 1.331 (3) | N3B—C8B | 1.332 (3) |
N3A—C8A | 1.344 (3) | N3B—C12B | 1.339 (3) |
N4A—C13A | 1.317 (3) | N4B—C13B | 1.312 (3) |
N4A—C14A | 1.395 (3) | N4B—C14B | 1.392 (3) |
N5A—C13A | 1.351 (4) | N5B—C13B | 1.361 (3) |
N5A—C19A | 1.377 (4) | N5B—C19B | 1.371 (3) |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1NA···O1W | 0.94 (2) | 2.03 (2) | 2.946 (4) | 164 (3) |
N5A—H5NA···O1W | 0.88 (2) | 2.05 (2) | 2.907 (4) | 166 (3) |
N1B—H1NB···N2Bi | 0.90 (2) | 2.47 (2) | 3.353 (4) | 167 (2) |
N5B—H5NB···N2Bi | 0.89 (2) | 2.21 (2) | 3.048 (3) | 157 (2) |
O1W—H1WA···O2Wii | 0.90 (3) | 1.88 (3) | 2.758 (4) | 164 (3) |
O1W—H1WB···N4B | 0.90 (3) | 2.04 (3) | 2.914 (4) | 163 (3) |
O2W—H2WA···N2A | 0.88 (3) | 1.92 (3) | 2.800 (4) | 175 (3) |
O2W—H2WB···O3Wiii | 0.87 (3) | 1.91 (3) | 2.780 (4) | 176 (4) |
O3W—H3WA···N4A | 0.88 (2) | 1.93 (2) | 2.791 (4) | 166 (4) |
O3W—H3WB···O2Wi | 0.89 (5) | 2.03 (5) | 2.905 (4) | 171 (4) |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x, −y+3/2, z−1/2; (iii) −x+1, y+1/2, −z+3/2. |
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During the past decade we have been performing a systematic study of the crystal structure of metal–thiosulfate compounds. By changing the size and/or the coordination sites of some accompanying N-polydentate organic ligands, it was expected that useful information about the influence they might have in the binding of the anion to the metal would be revealed. Through this strategy, we have been able to investigate a large number of thiosulfate complexes based on the most common N-bidentate ligands, including 2,2'-bipyridine (Freire et al., 1999; Baggio et al., 1997a, Baggio et al., 1997b; Freire et al., 2000a), 1,10-phenanthroline (Freire et al., 1999; Baggio et al., 1998; Freire et al., 2001; Freire et al., 2000a; Baggio et al., 1996a) and 2,9(or 4,7)-dimethyl-1,10-phenanthroline (Baggio et al., 1997c; Baggio et al., 1996b; Freire et al., 2000b).
As a natural extension of the project, we decided to include N-tridentate ligands in the compounds under study, and among other molecules deemed potentially suitable for our purposes we focused our attention and efforts on 2,6-bis(2-benzimidazolyl) pyridine (hereafter bbip), a molecule far less studied than other common N-tridentate species (terpyridine etc.). A search in the November 2002 release of the Cambridge Structural Database (CSD; Allen, 2002) showed twelve entries in which the molecule acts as a tridentate ligand and complexes with different metals, and another two in which the molecule does not coordinate, viz. hydroxy-triphenyl-tin 2,6-bis(1H-benzimidazol-2-yl)pyridine monohydrate (Kong Mun Lo et al., 1999), in which bbip acts as a neutral moiety, and 2-[6-(1H-benzimidazol-2-yl)-2-pyridyl]-1H-benzimidazol-3-ium perchlorate monohydrate (Boca et al., 2000), in which bbip acts as a singly protonated ion.
During the synthesis of a variety of bbip–thiosulfate complexes, we obtained, as unexpected by-products, well shaped crystals that were suspected to be two different hydrated phases of free bbip. The lack of bbip pure hydrates in the CSD, as well as our interest in the free molecule for comparison with those in the complexes synthesized (to be reported elsewhere), prompted us to undertake their structural study, which is reported here.
Both forms crystallize in the monoclinic space group P21/c, but while phase (I) contains one bbip and one hydration water molecule in each asymmetric unit (Fig. 1), phase (II) contains three hydration water and two independent bbip molecules (Fig. 2). The molecular structures do not depart from the expected structure, and they exhibit quite similar bond distances and angles (Table 1); with very few exceptions, homologous parameters in the two structures fall within one standard deviation of one another. The main differences in the molecular geometries arise from the slight rotation of the lateral wings around the C7—C8 and C12—C13 single bonds, under the strains imposed by the extensive hydrogen-bonding interactions. In both structures, all the H atoms amenable to hydrogen bonding are involved in these kinds of interactions, leading in both cases to tightly woven networks.
In (I), the only water molecule present in the structure acts as a donor of its two H atoms (accepted by the unprotonated N atoms of two different bbip molecules) and as an acceptor of those provided by the protonated amine N atoms of a third bbip unit. The water molecule thus acts as a central link for the packing interactions, which build broad two-dimensional structures parallel to the (010) plane (Table 2 and Figs. 1 and 3) at y ~0.25 and 0.75. There is, in addition, a π-stacking interaction, which provides a link between layers and which connects the benzimidazolyl group (N1/N2/C1–C7) with its (1 − x,1 − y,1 − z) centrosymmetric image. The two parallel groups are separated by ~3.4 Å, with an estimated overlap of 30% of their areas.
The packing of (II) is more complicated. There are two different types of hydrogen-bonded aggregates, each involving only one of the two independent bbip molecules present (Table 2 and Figs. 2 and 4). One molecule, bbip(A), interacts with all three water molecules to form a two-dimensional network parallel to the (100) plane at x ~0.50. The central knot is a closed loop built around a center of inversion, which involves water molecules O2W and O3W and to which bbip(A) bonds through the acceptance of one H atom from each of the water molecules H2WA and H3WB. Molecule bbip(A) also chelates with hydrogen bonds the remaining water molecule, O1W, which in turn donates one hydrogen bond to the central knot. On the other hand, molecule bbip(B) is involved in a chain structure, which evolves parallel to the [001] direction and is the result of a pure bbip···bbip interaction that is not mediated by water. Finally, the compact two-dimensional structure formed by the bbip(A) molecules and the set of parallel chains containing the bbip(B) molecules link together through water molecule O1W, which is already involved in the two-dimensional bbip(A) network and which donates its remaining hydrogen bond to the basic N4B atom. No stacking interactions could be found for the bbip(B) aggregate. In the bbip(A) aggregate, the N3A/C8A–C12A pyridyl ring exhibits a parallel overlap of ca 90% of its total area with the N1A/N2A/C1A–C7A benzimidazolyl group (x,1.5 − y,-0.5 + z), with a mean distance of ~3.30 Å between planes. In addition, the operation (1 − x,1 − y,1 − z) generates two parallel images of the N3A/N4A/N5A/C8A–C19A pyridylbenzimidazolyl group, which are separated by ~3.45 Å and exhibit a small overlap (~15%).
Comparison of (I) and (II) with other compounds containing bbip shows that the most significant differences occur again in the torsion angles around the C—C single bonds, all other parameters being almost the same. The structures presented here share with the only free neutral bbip example (Kong Mun Lo et al., 1999) a trans–trans disposition of atoms N2 and N4 with respect to atom N3 (N2—C7—C8—N3 and N3—12—C13–N4 ~180°). When chelating to a metal, the ligand reverses the orientation of the benzimidazolyl wings and the relative disposition becomes cis–cis, with the corresponding torsion angles near zero. However, when considering the relative deviations from 0 or 180°, those in the present structures appear among the largest [8.8 (3)° for (1) and 9.4 (3)° for (2a)]. These departures from planarity (probably due to hydrogen-bonding strain, as already discussed) are comparable to those in strained bbip moieties coordinated to large cations [e.g. bis(2,6-bis(Benzimidazol-2-yl)pyridine-N,N',N'')-dinitrato-cerium(iii) (Shuangxi Wang et al., 1994), where bbip exhibits a maximum torsion angle of 8.3 (2)°].