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The crystal structures of four isomers of C6H9N3S3 were determined. Their molecules tend to be planar, but the tendency is weakened when the number of formal N=C double bonds in the ring decreases. The structures of the triazine rings in the four compounds were found to be similar to their oxy analogues. All of the compounds form planar layer structures with similar interlayer spacing ranging from 3.41 to 3.60 Å. The molecular packing of each isomer is controlled by weak van der Waals interactions.
Supporting information
CCDC references: 144637; 144638; 144639; 144640
The title compounds were synthesized by methylation of trithiocyanuric acid with
diazomethane according to Tosato & Paoloni (1966). Crystals of (I) were
obtained from a chloroform solution, crystals of (II) and (III) from ethyl
acetate solutions and crystals of (IV) from ethanol by slow evaporation of the
solvent at room temperature.
The coordinates of H atoms in molecules of (I) and in the methyl groups C2 and
C4 of (II) were refined, the positions of all other hydrogen atoms in (II),
(III) and (IV) were calculated. The calculated transmission factors for (II)
are 0.807–0.966, but no absorption correction was applied. The data for (III)
are 91.4% complete to 2 θ 55.0°. The absolute structure of (IV) was
determined using 1644 Friedel pairs.
Data collection: Philips PW 1100/20 (Philips, 1973) for (I), (II); COLLECT (Nonius, 1998) for (III); Kappa-CCD Software (Nonius, 1998) for (IV). Cell refinement: Philips PW 1100/20 for (I), (II); DENZO-SMN (Otwinowski & Minor, 1997) for (III); DENZO-SMN (Otwinowski & Minor,1997) for (IV). Data reduction: PROCN (Hornstra & Stubbe, 1973; Goldberg, 1990) for (I), (II); DENZO-SMN for (III), (IV). For all compounds, program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997). Molecular graphics: ORTEPII (Johnson, 1976) and TEXSAN (Molecular Structure Corporation, 1995 for (I); ORTEPII (Johnson, 1976) and TEXSAN (Molecular Structure Corporation, 1995) for (II), (III), (IV). Software used to prepare material for publication: WORD (Microsoft, 1998) for (I), (II), (III); WORD (Microsoft, 1995) for (IV).
(I) 2,4,6-Tris(methylthio)-1,3,5-triazine
top
Crystal data top
C6H9N3S3 | Dx = 1.529 Mg m−3 |
Mr = 219.34 | Mo Kα radiation, λ = 0.71070 Å |
Hexagonal, P63/m | Cell parameters from 25 reflections |
a = 8.898 (2) Å | θ = 2.6–12.0° |
c = 6.947 (2) Å | µ = 0.73 mm−1 |
V = 476.3 (2) Å3 | T = 293 K |
Z = 2 | Hexagonal prism, colourless |
F(000) = 228 | 0.20 × 0.14 × 0.12 mm |
Data collection top
PHILIPS PW 1100 four-circle diffractometer | Rint = 0.084 |
Radiation source: fine-focus sealed tube | θmax = 25.0°, θmin = 2.6° |
Graphite monochromator | h = 0→10 |
ω/2θ scans | k = −10→9 |
1053 measured reflections | l = −8→0 |
313 independent reflections | 3 standard reflections every 120 min min |
226 reflections with I > 2σ(I) | intensity decay: none |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.034 | Only H-atom coordinates refined |
wR(F2) = 0.088 | w = 1/[σ2(Fo2) + (0.0324P)2 + 0.0347P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
313 reflections | Δρmax = 0.23 e Å−3 |
31 parameters | Δρmin = −0.20 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.033 (6) |
Crystal data top
C6H9N3S3 | Z = 2 |
Mr = 219.34 | Mo Kα radiation |
Hexagonal, P63/m | µ = 0.73 mm−1 |
a = 8.898 (2) Å | T = 293 K |
c = 6.947 (2) Å | 0.20 × 0.14 × 0.12 mm |
V = 476.3 (2) Å3 | |
Data collection top
PHILIPS PW 1100 four-circle diffractometer | Rint = 0.084 |
1053 measured reflections | 3 standard reflections every 120 min min |
313 independent reflections | intensity decay: none |
226 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.088 | Only H-atom coordinates refined |
S = 1.03 | Δρmax = 0.23 e Å−3 |
313 reflections | Δρmin = −0.20 e Å−3 |
31 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.38593 (13) | 0.12173 (12) | 0.2500 | 0.0448 (4) | |
N1 | 0.0500 (4) | −0.1246 (4) | 0.2500 | 0.0367 (9) | |
C1 | 0.3932 (6) | −0.0766 (6) | 0.2500 | 0.0504 (13) | |
C2 | 0.1621 (5) | 0.0458 (5) | 0.2500 | 0.0353 (11) | |
H1 | 0.331 (4) | −0.148 (4) | 0.140 (4) | 0.053* | |
H2 | 0.509 (7) | −0.044 (6) | 0.2500 | 0.053* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0283 (6) | 0.0336 (6) | 0.0707 (8) | 0.0142 (5) | 0.000 | 0.000 |
N1 | 0.034 (2) | 0.0327 (18) | 0.0452 (19) | 0.0175 (16) | 0.000 | 0.000 |
C1 | 0.031 (2) | 0.038 (2) | 0.084 (4) | 0.018 (2) | 0.000 | 0.000 |
C2 | 0.032 (2) | 0.036 (2) | 0.037 (2) | 0.0171 (19) | 0.000 | 0.000 |
Geometric parameters (Å, º) top
S1—C2 | 1.754 (4) | C1—H1 | 0.97 (3) |
S1—C1 | 1.798 (5) | C1—H2 | 0.92 (5) |
N1—C2 | 1.335 (5) | C2—N1ii | 1.344 (5) |
N1—C2i | 1.344 (5) | | |
| | | |
C2—S1—C1 | 102.3 (2) | S1—C1—H1 | 110.9 (18) |
C2—N1—C2i | 112.8 (5) | S1—C1—H2 | 106 (3) |
N1—C2—S1 | 119.8 (3) | N1—C2—N1ii | 127.2 (5) |
N1ii—C2—S1 | 112.9 (3) | H1—C1—H2 | 112 (2) |
Symmetry codes: (i) −x+y, −x, z; (ii) −y, x−y, z. |
(II) 3-Methyl-4,6-bismethylthio-1,3,5-triazine-2(3
H)-thione
top
Crystal data top
C6H9N3S3 | Dx = 1.446 Mg m−3 |
Mr = 219.34 | Mo Kα radiation, λ = 0.71070 Å |
Orthorhombic, Pnma | Cell parameters from 25 reflections |
a = 16.566 (6) Å | θ = 2.5–18.2° |
b = 6.813 (2) Å | µ = 0.69 mm−1 |
c = 8.926 (3) Å | T = 293 K |
V = 1007.4 (6) Å3 | Plate, light yellow |
Z = 4 | 0.32 × 0.29 × 0.05 mm |
F(000) = 456 | |
Data collection top
PHILIPS PW 1100 four-circle diffractometer | Rint = 0.060 |
Radiation source: fine-focus sealed tube | θmax = 25.0°, θmin = 2.5° |
Graphite monochromator | h = −19→19 |
ω/2θ scans | k = −8→0 |
2410 measured reflections | l = −10→10 |
970 independent reflections | 3 standard reflections every 120 min min |
732 reflections with I > 2σ(I) | intensity decay: none |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.117 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0534P)2 + 0.3375P] where P = (Fo2 + 2Fc2)/3 |
970 reflections | (Δ/σ)max < 0.001 |
83 parameters | Δρmax = 0.37 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
Crystal data top
C6H9N3S3 | V = 1007.4 (6) Å3 |
Mr = 219.34 | Z = 4 |
Orthorhombic, Pnma | Mo Kα radiation |
a = 16.566 (6) Å | µ = 0.69 mm−1 |
b = 6.813 (2) Å | T = 293 K |
c = 8.926 (3) Å | 0.32 × 0.29 × 0.05 mm |
Data collection top
PHILIPS PW 1100 four-circle diffractometer | Rint = 0.060 |
2410 measured reflections | 3 standard reflections every 120 min min |
970 independent reflections | intensity decay: none |
732 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.117 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.37 e Å−3 |
970 reflections | Δρmin = −0.22 e Å−3 |
83 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S2 | 0.45212 (7) | 0.2500 | 0.65758 (14) | 0.0570 (4) | |
S4 | 0.51432 (8) | 0.2500 | 0.07563 (14) | 0.0616 (4) | |
S6 | 0.75133 (6) | 0.2500 | 0.45694 (16) | 0.0752 (6) | |
N1 | 0.59895 (18) | 0.2500 | 0.5463 (4) | 0.0423 (9) | |
N3 | 0.49389 (18) | 0.2500 | 0.3690 (4) | 0.0409 (9) | |
N5 | 0.6277 (2) | 0.2500 | 0.2848 (4) | 0.0469 (9) | |
C2 | 0.5184 (2) | 0.2500 | 0.5175 (5) | 0.0390 (10) | |
C3 | 0.4074 (3) | 0.2500 | 0.3306 (7) | 0.0636 (16) | |
H31 | 0.381 (3) | 0.2500 | 0.413 (8) | 0.095* | |
H32 | 0.401 (3) | 0.140 (6) | 0.290 (5) | 0.095* | |
C4 | 0.5496 (3) | 0.2500 | 0.2578 (5) | 0.0424 (10) | |
C44 | 0.6063 (4) | 0.2500 | −0.0279 (7) | 0.0796 (18) | |
H41 | 0.591 (4) | 0.2500 | −0.123 (9) | 0.119* | |
H42 | 0.639 (3) | 0.145 (7) | −0.005 (5) | 0.119* | |
C6 | 0.6474 (2) | 0.2500 | 0.4305 (5) | 0.0436 (11) | |
C66 | 0.7610 (3) | 0.2500 | 0.6567 (7) | 0.095 (2) | |
H61 | 0.8172 | 0.2500 | 0.6833 | 0.143* | |
H62 | 0.7356 | 0.1349 | 0.6970 | 0.143* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S2 | 0.0518 (7) | 0.0604 (9) | 0.0587 (8) | 0.000 | 0.0182 (6) | 0.000 |
S4 | 0.0784 (9) | 0.0646 (10) | 0.0419 (7) | 0.000 | −0.0174 (6) | 0.000 |
S6 | 0.0348 (6) | 0.1256 (15) | 0.0650 (9) | 0.000 | −0.0008 (6) | 0.000 |
N1 | 0.0385 (17) | 0.053 (2) | 0.0350 (17) | 0.000 | −0.0011 (14) | 0.000 |
N3 | 0.0378 (17) | 0.041 (2) | 0.044 (2) | 0.000 | −0.0084 (15) | 0.000 |
N5 | 0.050 (2) | 0.053 (2) | 0.0375 (19) | 0.000 | 0.0028 (15) | 0.000 |
C2 | 0.041 (2) | 0.031 (2) | 0.045 (2) | 0.000 | 0.0026 (18) | 0.000 |
C3 | 0.043 (3) | 0.078 (5) | 0.070 (4) | 0.000 | −0.018 (2) | 0.000 |
C4 | 0.054 (2) | 0.036 (2) | 0.036 (2) | 0.000 | −0.0065 (18) | 0.000 |
C44 | 0.101 (5) | 0.096 (5) | 0.042 (3) | 0.000 | −0.001 (3) | 0.000 |
C6 | 0.038 (2) | 0.053 (3) | 0.039 (2) | 0.000 | −0.0004 (16) | 0.000 |
C66 | 0.055 (3) | 0.159 (7) | 0.072 (4) | 0.000 | −0.026 (3) | 0.000 |
Geometric parameters (Å, º) top
S2—C2 | 1.664 (4) | N3—C4 | 1.356 (6) |
S4—C4 | 1.728 (4) | N3—C3 | 1.474 (5) |
S4—C44 | 1.782 (7) | N5—C4 | 1.315 (5) |
S6—C6 | 1.738 (4) | N5—C6 | 1.341 (5) |
S6—C66 | 1.790 (6) | C3—H31 | 0.86 (6) |
N1—C2 | 1.359 (5) | C3—H32 | 0.84 (4) |
N1—C6 | 1.309 (5) | C44—H41 | 0.88 (8) |
N3—C2 | 1.386 (5) | C44—H42 | 0.92 (4) |
| | | |
N1—C2—S2 | 120.4 (3) | C2—N3—C3 | 120.5 (4) |
N1—C2—N3 | 118.0 (3) | C4—N3—C3 | 119.5 (4) |
N1—C6—N5 | 128.1 (4) | C4—N5—C6 | 114.7 (3) |
N1—C6—S6 | 120.0 (3) | C6—S6—C66 | 103.0 (2) |
N3—C2—S2 | 121.7 (3) | C6—N1—C2 | 116.9 (3) |
N3—C4—S4 | 117.3 (3) | S4—C44—H41 | 104 (5) |
N5—C4—S4 | 120.3 (3) | S4—C44—H42 | 113 (3) |
N5—C4—N3 | 122.4 (4) | N3—C3—H31 | 108 (4) |
N5—C6—S6 | 111.9 (3) | N3—C3—H32 | 103 (3) |
C4—S4—C44 | 101.5 (3) | H31—C3—H32 | 107 (3) |
C4—N3—C2 | 120.0 (3) | H41—C44—H42 | 113 (4) |
(III) 1,3-Dimethyl-4-methylthio-1,3,5-triazine-2,6(1
H,3H)-dithione
top
Crystal data top
C6H9N3S3 | Z = 6 |
Mr = 219.34 | F(000) = 684 |
Triclinic, P1 | Dx = 1.533 Mg m−3 |
a = 9.618 (5) Å | Mo Kα radiation, λ = 0.71070 Å |
b = 11.435 (6) Å | Cell parameters from 5974 reflections |
c = 13.910 (7) Å | θ = 2.2–27.5° |
α = 107.30 (5)° | µ = 0.73 mm−1 |
β = 100.65 (5)° | T = 293 K |
γ = 93.05 (5)° | Trigonal prism, yellow |
V = 1425.9 (2) Å3 | 0.30 × 0.15 × 0.10 mm |
Data collection top
Kappa CCD diffractometer | 4595 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.019 |
Graphite monochromator | θmax = 27.5°, θmin = 2.2° |
Detector resolution: 56 microns pixels mm-1 | h = 0→12 |
ϕ scans | k = −14→14 |
21286 measured reflections | l = −16→16 |
5970 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.129 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0549P)2 + 0.5239P] where P = (Fo2 + 2Fc2)/3 |
5970 reflections | (Δ/σ)max = 0.002 |
334 parameters | Δρmax = 0.38 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
Crystal data top
C6H9N3S3 | γ = 93.05 (5)° |
Mr = 219.34 | V = 1425.9 (2) Å3 |
Triclinic, P1 | Z = 6 |
a = 9.618 (5) Å | Mo Kα radiation |
b = 11.435 (6) Å | µ = 0.73 mm−1 |
c = 13.910 (7) Å | T = 293 K |
α = 107.30 (5)° | 0.30 × 0.15 × 0.10 mm |
β = 100.65 (5)° | |
Data collection top
Kappa CCD diffractometer | 4595 reflections with I > 2σ(I) |
21286 measured reflections | Rint = 0.019 |
5970 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.129 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.38 e Å−3 |
5970 reflections | Δρmin = −0.34 e Å−3 |
334 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S2A | 0.51892 (8) | 0.49176 (6) | 0.31593 (6) | 0.0636 (2) | |
S4A | 0.93909 (7) | 0.25962 (6) | 0.44949 (4) | 0.04772 (16) | |
S6A | 0.69820 (7) | 0.11600 (6) | 0.05616 (5) | 0.05675 (19) | |
N1A | 0.61718 (18) | 0.30058 (16) | 0.19507 (13) | 0.0401 (4) | |
N3A | 0.73020 (19) | 0.36776 (16) | 0.36865 (13) | 0.0392 (4) | |
N5A | 0.80135 (19) | 0.19475 (16) | 0.25529 (13) | 0.0394 (4) | |
C1A | 0.5083 (3) | 0.3089 (2) | 0.10773 (19) | 0.0573 (7) | |
H11A | 0.4664 | 0.3844 | 0.1284 | 0.086* | |
H12A | 0.4356 | 0.2402 | 0.0873 | 0.086* | |
H13A | 0.5521 | 0.3076 | 0.0508 | 0.086* | |
C2A | 0.6250 (2) | 0.38237 (19) | 0.29060 (17) | 0.0406 (5) | |
C3A | 0.7568 (3) | 0.4605 (2) | 0.47237 (19) | 0.0596 (7) | |
H31A | 0.7954 | 0.4230 | 0.5232 | 0.089* | |
H32A | 0.6689 | 0.4909 | 0.4859 | 0.089* | |
H33A | 0.8234 | 0.5276 | 0.4752 | 0.089* | |
C4A | 0.8129 (2) | 0.27291 (19) | 0.34617 (16) | 0.0372 (4) | |
C44A | 1.0106 (3) | 0.1215 (2) | 0.38828 (19) | 0.0539 (6) | |
H41A | 0.9345 | 0.0558 | 0.3555 | 0.081* | |
H42A | 1.0764 | 0.0993 | 0.4390 | 0.081* | |
H43A | 1.0591 | 0.1354 | 0.3376 | 0.081* | |
C6A | 0.7063 (2) | 0.20793 (19) | 0.17443 (16) | 0.0383 (5) | |
S2B | 0.03958 (8) | 0.46521 (6) | −0.28445 (5) | 0.05496 (18) | |
S4B | −0.10679 (7) | 0.84238 (5) | −0.00825 (5) | 0.04970 (17) | |
S6B | 0.27355 (7) | 0.57615 (6) | 0.11469 (5) | 0.05465 (18) | |
N1B | 0.1499 (2) | 0.53268 (15) | −0.08289 (14) | 0.0406 (4) | |
N3B | −0.02261 (19) | 0.64953 (16) | −0.13564 (13) | 0.0393 (4) | |
N5B | 0.08003 (19) | 0.69758 (15) | 0.04075 (13) | 0.0391 (4) | |
C1B | 0.2371 (3) | 0.4292 (2) | −0.1077 (2) | 0.0653 (8) | |
H11B | 0.1773 | 0.3564 | −0.1526 | 0.098* | |
H12B | 0.2814 | 0.4143 | −0.0453 | 0.098* | |
H13B | 0.3093 | 0.4498 | −0.1412 | 0.098* | |
C2B | 0.0569 (2) | 0.55157 (18) | −0.16363 (16) | 0.0385 (5) | |
C3B | −0.1269 (3) | 0.6755 (3) | −0.2158 (2) | 0.0606 (7) | |
H31B | −0.2145 | 0.6234 | −0.2292 | 0.091* | |
H32B | −0.0906 | 0.6596 | −0.2777 | 0.091* | |
H33B | −0.1438 | 0.7603 | −0.1929 | 0.091* | |
C4B | −0.0052 (2) | 0.71859 (18) | −0.03475 (17) | 0.0379 (4) | |
C44B | −0.0367 (3) | 0.9128 (2) | 0.12699 (19) | 0.0594 (7) | |
H41B | −0.0574 | 0.8567 | 0.1632 | 0.089* | |
H42B | −0.0796 | 0.9869 | 0.1513 | 0.089* | |
H43B | 0.0646 | 0.9325 | 0.1388 | 0.089* | |
C6B | 0.1626 (2) | 0.60347 (18) | 0.01950 (16) | 0.0374 (4) | |
S2C | 0.63244 (8) | 0.92140 (7) | 0.77534 (5) | 0.06005 (19) | |
S4C | 0.34295 (7) | 0.78616 (5) | 0.38887 (4) | 0.04609 (16) | |
S6C | 0.23512 (8) | 1.18550 (6) | 0.65611 (5) | 0.05621 (19) | |
N1C | 0.4244 (2) | 1.03988 (16) | 0.70662 (13) | 0.0406 (4) | |
N3C | 0.48270 (19) | 0.87142 (16) | 0.58428 (14) | 0.0395 (4) | |
N5C | 0.30184 (19) | 0.98447 (15) | 0.53279 (13) | 0.0389 (4) | |
C1C | 0.4474 (3) | 1.1235 (3) | 0.81431 (18) | 0.0673 (8) | |
H11C | 0.4662 | 1.0765 | 0.8611 | 0.101* | |
H12C | 0.3637 | 1.1638 | 0.8241 | 0.101* | |
H13C | 0.5271 | 1.1843 | 0.8272 | 0.101* | |
C2C | 0.5093 (2) | 0.94582 (19) | 0.68588 (17) | 0.0406 (5) | |
C3C | 0.5713 (3) | 0.7698 (2) | 0.5533 (2) | 0.0555 (6) | |
H31C | 0.5206 | 0.7092 | 0.4909 | 0.083* | |
H32C | 0.5916 | 0.7324 | 0.6069 | 0.083* | |
H33C | 0.6589 | 0.8023 | 0.5421 | 0.083* | |
C4C | 0.3764 (2) | 0.89200 (18) | 0.51229 (16) | 0.0373 (4) | |
C44C | 0.1885 (3) | 0.8383 (2) | 0.32802 (18) | 0.0514 (6) | |
H41C | 0.1127 | 0.8338 | 0.3636 | 0.077* | |
H42C | 0.1592 | 0.7870 | 0.2576 | 0.077* | |
H43C | 0.2107 | 0.9220 | 0.3303 | 0.077* | |
C6C | 0.3251 (2) | 1.06463 (18) | 0.63037 (16) | 0.0384 (5) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S2A | 0.0658 (4) | 0.0561 (4) | 0.0634 (4) | 0.0318 (3) | 0.0103 (3) | 0.0081 (3) |
S4A | 0.0501 (3) | 0.0530 (3) | 0.0349 (3) | 0.0069 (3) | −0.0016 (2) | 0.0123 (2) |
S6A | 0.0623 (4) | 0.0616 (4) | 0.0353 (3) | 0.0236 (3) | 0.0006 (3) | 0.0018 (3) |
N1A | 0.0364 (9) | 0.0429 (10) | 0.0369 (10) | 0.0086 (8) | 0.0009 (7) | 0.0100 (7) |
N3A | 0.0425 (10) | 0.0374 (9) | 0.0324 (10) | 0.0053 (7) | 0.0047 (7) | 0.0050 (7) |
N5A | 0.0390 (10) | 0.0390 (9) | 0.0366 (10) | 0.0097 (7) | 0.0028 (7) | 0.0090 (7) |
C1A | 0.0518 (14) | 0.0665 (16) | 0.0458 (14) | 0.0239 (12) | −0.0061 (11) | 0.0128 (11) |
C2A | 0.0391 (11) | 0.0370 (11) | 0.0439 (13) | 0.0051 (9) | 0.0082 (9) | 0.0102 (9) |
C3A | 0.0676 (17) | 0.0548 (15) | 0.0418 (14) | 0.0070 (12) | 0.0049 (12) | −0.0027 (11) |
C4A | 0.0348 (10) | 0.0382 (11) | 0.0375 (12) | 0.0031 (8) | 0.0050 (8) | 0.0121 (8) |
C44A | 0.0501 (14) | 0.0581 (15) | 0.0512 (15) | 0.0144 (11) | 0.0025 (11) | 0.0174 (11) |
C6A | 0.0355 (11) | 0.0382 (11) | 0.0375 (12) | 0.0038 (8) | 0.0036 (8) | 0.0088 (8) |
S2B | 0.0691 (4) | 0.0526 (4) | 0.0344 (3) | 0.0060 (3) | 0.0094 (3) | 0.0018 (2) |
S4B | 0.0497 (4) | 0.0463 (3) | 0.0491 (4) | 0.0216 (3) | 0.0034 (3) | 0.0105 (2) |
S6B | 0.0673 (4) | 0.0549 (4) | 0.0409 (4) | 0.0292 (3) | 0.0032 (3) | 0.0149 (3) |
N1B | 0.0507 (11) | 0.0337 (9) | 0.0367 (10) | 0.0145 (8) | 0.0103 (8) | 0.0077 (7) |
N3B | 0.0389 (10) | 0.0430 (10) | 0.0340 (10) | 0.0070 (8) | 0.0031 (7) | 0.0114 (7) |
N5B | 0.0447 (10) | 0.0355 (9) | 0.0359 (10) | 0.0133 (8) | 0.0071 (7) | 0.0090 (7) |
C1B | 0.088 (2) | 0.0505 (14) | 0.0576 (17) | 0.0391 (14) | 0.0206 (14) | 0.0088 (11) |
C2B | 0.0431 (12) | 0.0343 (10) | 0.0357 (12) | 0.0003 (9) | 0.0089 (9) | 0.0079 (8) |
C3B | 0.0554 (15) | 0.0797 (18) | 0.0451 (15) | 0.0216 (14) | −0.0005 (11) | 0.0213 (12) |
C4B | 0.0370 (11) | 0.0342 (10) | 0.0416 (12) | 0.0066 (8) | 0.0074 (8) | 0.0106 (8) |
C44B | 0.0639 (16) | 0.0501 (14) | 0.0535 (15) | 0.0250 (12) | 0.0029 (12) | 0.0029 (11) |
C6B | 0.0429 (11) | 0.0320 (10) | 0.0370 (12) | 0.0073 (8) | 0.0094 (9) | 0.0090 (8) |
S2C | 0.0605 (4) | 0.0665 (4) | 0.0520 (4) | 0.0162 (3) | −0.0031 (3) | 0.0242 (3) |
S4C | 0.0522 (3) | 0.0415 (3) | 0.0389 (3) | 0.0129 (2) | 0.0102 (2) | 0.0023 (2) |
S6C | 0.0668 (4) | 0.0477 (3) | 0.0461 (4) | 0.0261 (3) | 0.0079 (3) | 0.0017 (3) |
N1C | 0.0503 (11) | 0.0363 (9) | 0.0316 (10) | 0.0081 (8) | 0.0065 (7) | 0.0061 (7) |
N3C | 0.0394 (10) | 0.0384 (9) | 0.0407 (10) | 0.0112 (7) | 0.0101 (7) | 0.0102 (7) |
N5C | 0.0406 (10) | 0.0361 (9) | 0.0357 (10) | 0.0083 (7) | 0.0056 (7) | 0.0056 (7) |
C1C | 0.086 (2) | 0.0656 (17) | 0.0358 (14) | 0.0194 (15) | −0.0005 (13) | −0.0006 (11) |
C2C | 0.0397 (12) | 0.0393 (11) | 0.0437 (13) | 0.0028 (9) | 0.0068 (9) | 0.0157 (9) |
C3C | 0.0539 (15) | 0.0524 (14) | 0.0614 (16) | 0.0260 (12) | 0.0154 (12) | 0.0144 (11) |
C4C | 0.0401 (11) | 0.0339 (10) | 0.0370 (12) | 0.0041 (8) | 0.0094 (8) | 0.0088 (8) |
C44C | 0.0573 (15) | 0.0476 (13) | 0.0412 (13) | 0.0103 (11) | 0.0013 (10) | 0.0065 (10) |
C6C | 0.0397 (11) | 0.0344 (10) | 0.0388 (12) | 0.0035 (8) | 0.0078 (9) | 0.0085 (8) |
Geometric parameters (Å, º) top
S2A—C2A | 1.654 (2) | N1B—C6B | 1.392 (3) |
S4A—C4A | 1.751 (2) | N3B—C2B | 1.390 (3) |
S4A—C44A | 1.796 (3) | N3B—C3B | 1.467 (3) |
S6A—C6A | 1.653 (2) | N3B—C4B | 1.364 (3) |
N1A—C1A | 1.480 (3) | N5B—C4B | 1.298 (3) |
N1A—C2A | 1.365 (3) | N5B—C6B | 1.366 (3) |
N1A—C6A | 1.395 (3) | S2C—C2C | 1.651 (2) |
N3A—C2A | 1.397 (3) | S4C—C4C | 1.742 (2) |
N3A—C3A | 1.482 (3) | S4C—C44C | 1.791 (3) |
N3A—C4A | 1.374 (3) | S6C—C6C | 1.654 (2) |
N5A—C4A | 1.294 (3) | N1C—C1C | 1.487 (3) |
N5A—C6A | 1.363 (3) | N1C—C2C | 1.380 (3) |
S2B—C2B | 1.649 (2) | N1C—C6C | 1.396 (3) |
S4B—C4B | 1.751 (2) | N3C—C2C | 1.384 (3) |
S4B—C44B | 1.793 (3) | N3C—C3C | 1.485 (3) |
S6B—C6B | 1.658 (2) | N3C—C4C | 1.375 (3) |
N1B—C1B | 1.481 (3) | N5C—C4C | 1.300 (3) |
N1B—C2B | 1.379 (3) | N5C—C6C | 1.363 (3) |
| | | |
N1A—C2A—S2A | 123.95 (17) | C2B—N1B—C1B | 117.43 (19) |
N1A—C2A—N3A | 115.25 (19) | C2B—N1B—C6B | 123.40 (18) |
N1A—C6A—S6A | 121.68 (16) | C2B—N3B—C3B | 118.99 (19) |
N3A—C2A—S2A | 120.80 (17) | C4B—S4B—C44B | 100.62 (12) |
N3A—C4A—S4A | 116.28 (16) | C4B—N3B—C2B | 120.14 (18) |
N5A—C4A—S4A | 119.64 (17) | C4B—N3B—C3B | 120.86 (19) |
N5A—C4A—N3A | 124.07 (19) | C4B—N5B—C6B | 119.08 (19) |
N5A—C6A—S6A | 120.40 (17) | C6B—N1B—C1B | 119.15 (19) |
N5A—C6A—N1A | 117.92 (19) | C2C—N1C—C1C | 117.96 (19) |
C2A—N1A—C1A | 118.94 (19) | C2C—N1C—C6C | 123.06 (19) |
C2A—N1A—C6A | 123.63 (18) | C2C—N3C—C3C | 119.34 (19) |
C2A—N3A—C3A | 118.94 (19) | C4C—S4C—C44C | 101.14 (12) |
C4A—S4A—C44A | 101.07 (12) | C4C—N3C—C2C | 120.47 (18) |
C4A—N3A—C2A | 119.52 (18) | C4C—N3C—C3C | 120.18 (19) |
C4A—N3A—C3A | 121.39 (19) | C4C—N5C—C6C | 119.81 (19) |
C4A—N5A—C6A | 119.43 (19) | C6C—N1C—C1C | 118.84 (19) |
C6A—N1A—C1A | 117.43 (19) | N1C—C2C—N3C | 115.13 (19) |
N1B—C2B—S2B | 123.14 (17) | N1C—C2C—S2C | 122.92 (18) |
N1B—C2B—N3B | 114.85 (19) | N1C—C6C—S6C | 121.90 (16) |
N1B—C6B—S6B | 121.97 (16) | N3C—C2C—S2C | 121.94 (17) |
N3B—C2B—S2B | 122.01 (17) | N3C—C4C—S4C | 116.74 (16) |
N3B—C4B—S4B | 116.47 (16) | N5C—C4C—S4C | 120.05 (17) |
N5B—C4B—S4B | 119.23 (17) | N5C—C4C—N3C | 123.2 (2) |
N5B—C4B—N3B | 124.30 (19) | N5C—C6C—S6C | 120.12 (17) |
N5B—C6B—S6B | 119.85 (17) | N5C—C6C—N1C | 117.98 (19) |
N5B—C6B—N1B | 118.18 (19) | | |
| | | |
C1A—N1A—C2A—S2A | 0.2 (3) | C3B—N3B—C4B—N5B | 176.7 (2) |
C1A—N1A—C2A—N3A | 179.7 (2) | C4B—N3B—C2B—S2B | 179.91 (16) |
C1A—N1A—C6A—S6A | 3.7 (3) | C4B—N3B—C2B—N1B | 0.1 (3) |
C1A—N1A—C6A—N5A | −176.2 (2) | C4B—N5B—C6B—S6B | 179.28 (17) |
C2A—N1A—C6A—S6A | −176.62 (17) | C4B—N5B—C6B—N1B | −1.0 (3) |
C2A—N1A—C6A—N5A | 3.5 (3) | C44B—S4B—C4B—N3B | −174.34 (18) |
C2A—N3A—C4A—S4A | −178.51 (15) | C44B—S4B—C4B—N5B | 6.0 (2) |
C2A—N3A—C4A—N5A | 0.8 (3) | C6B—N1B—C2B—S2B | −178.46 (16) |
C3A—N3A—C2A—S2A | −7.0 (3) | C6B—N1B—C2B—N3B | 1.4 (3) |
C3A—N3A—C2A—N1A | 173.5 (2) | C6B—N5B—C4B—N3B | 2.5 (3) |
C3A—N3A—C4A—S4A | 5.9 (3) | C6B—N5B—C4B—S4B | −177.85 (16) |
C3A—N3A—C4A—N5A | −174.8 (2) | C1C—N1C—C2C—S2C | 1.0 (3) |
C4A—N3A—C2A—S2A | 177.34 (16) | C1C—N1C—C2C—N3C | −179.9 (2) |
C4A—N3A—C2A—N1A | −2.2 (3) | C1C—N1C—C6C—S6C | 1.2 (3) |
C4A—N5A—C6A—S6A | 175.24 (16) | C1C—N1C—C6C—N5C | −177.7 (2) |
C4A—N5A—C6A—N1A | −4.9 (3) | C2C—N3C—C4C—S4C | −175.32 (15) |
C44A—S4A—C4A—N3A | 176.03 (17) | C2C—N3C—C4C—N5C | 4.2 (3) |
C44A—S4A—C4A—N5A | −3.4 (2) | C2C—N1C—C6C—S6C | −174.46 (17) |
C6A—N1A—C2A—S2A | −179.48 (17) | C2C—N1C—C6C—N5C | 6.6 (3) |
C6A—N1A—C2A—N3A | 0.1 (3) | C3C—N3C—C4C—S4C | 5.4 (3) |
C6A—N5A—C4A—S4A | −177.80 (16) | C3C—N3C—C2C—S2C | −2.7 (3) |
C6A—N5A—C4A—N3A | 2.9 (3) | C3C—N3C—C2C—N1C | 178.16 (19) |
C1B—N1B—C2B—S2B | −0.2 (3) | C3C—N3C—C4C—N5C | −175.0 (2) |
C1B—N1B—C2B—N3B | 179.7 (2) | C4C—N3C—C2C—S2C | 178.00 (16) |
C1B—N1B—C6B—S6B | 0.5 (3) | C4C—N3C—C2C—N1C | −1.1 (3) |
C1B—N1B—C6B—N5B | −179.3 (2) | C4C—N5C—C6C—S6C | 177.64 (17) |
C2B—N3B—C4B—S4B | 178.26 (15) | C4C—N5C—C6C—N1C | −3.4 (3) |
C2B—N3B—C4B—N5B | −2.1 (3) | C44C—S4C—C4C—N3C | 173.79 (17) |
C2B—N1B—C6B—S6B | 178.78 (16) | C44C—S4C—C4C—N5C | −5.8 (2) |
C2B—N1B—C6B—N5B | −1.0 (3) | C6C—N1C—C2C—S2C | 176.67 (16) |
C3B—N3B—C2B—S2B | 1.1 (3) | C6C—N1C—C2C—N3C | −4.2 (3) |
C3B—N3B—C2B—N1B | −178.7 (2) | C6C—N5C—C4C—S4C | 177.74 (15) |
C3B—N3B—C4B—S4B | −3.0 (3) | C6C—N5C—C4C—N3C | −1.8 (3) |
(IV) 1,3,5-Trimethyl-1,3,5-triazine-2,4,6(1
H,3H,5
H)-trithione
top
Crystal data top
C6H9N3S3 | F(000) = 912 |
Mr = 219.34 | Dx = 1.504 Mg m−3 |
Monoclinic, C2 | Mo Kα radiation, λ = 0.71070 Å |
a = 15.247 (1) Å | Cell parameters from 3563 reflections |
b = 8.792 (1) Å | θ = 1.4–25.4° |
c = 16.165 (1) Å | µ = 0.71 mm−1 |
β = 116.60 (1)° | T = 293 K |
V = 1937.5 (1) Å3 | Trigonal prism, yellow |
Z = 8 | 0.25 × 0.25 × 0.15 mm |
Data collection top
Nonius Kappa-CCD diffractometer | 3323 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.083 |
Graphite monochromator | θmax = 25.4°, θmin = 1.4° |
ϕ scans | h = 0→18 |
15863 measured reflections | k = −10→10 |
3563 independent reflections | l = −19→17 |
Refinement top
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.056 | w = 1/[σ2(Fo2) + (0.0599P)2 + 4.3506P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.149 | (Δ/σ)max = 0.008 |
S = 1.14 | Δρmax = 0.38 e Å−3 |
3563 reflections | Δρmin = −0.32 e Å−3 |
224 parameters | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.0089 (12) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983) |
Secondary atom site location: difference Fourier map | Absolute structure parameter: −0.06 (14) |
Crystal data top
C6H9N3S3 | V = 1937.5 (1) Å3 |
Mr = 219.34 | Z = 8 |
Monoclinic, C2 | Mo Kα radiation |
a = 15.247 (1) Å | µ = 0.71 mm−1 |
b = 8.792 (1) Å | T = 293 K |
c = 16.165 (1) Å | 0.25 × 0.25 × 0.15 mm |
β = 116.60 (1)° | |
Data collection top
Nonius Kappa-CCD diffractometer | 3323 reflections with I > 2σ(I) |
15863 measured reflections | Rint = 0.083 |
3563 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.056 | H-atom parameters constrained |
wR(F2) = 0.149 | Δρmax = 0.38 e Å−3 |
S = 1.14 | Δρmin = −0.32 e Å−3 |
3563 reflections | Absolute structure: Flack (1983) |
224 parameters | Absolute structure parameter: −0.06 (14) |
1 restraint | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S2A | 0.78211 (12) | 0.58878 (16) | 0.36399 (14) | 0.0674 (4) | |
S4A | 0.71877 (12) | 1.17825 (16) | 0.36675 (13) | 0.0685 (5) | |
S6A | 1.05704 (10) | 0.9810 (2) | 0.39094 (12) | 0.0671 (5) | |
N1A | 0.9123 (3) | 0.7999 (5) | 0.3771 (3) | 0.0497 (10) | |
N3A | 0.7694 (3) | 0.8881 (4) | 0.3785 (3) | 0.0431 (9) | |
N5A | 0.8803 (3) | 1.0613 (5) | 0.3694 (3) | 0.0529 (11) | |
C1A | 0.9748 (5) | 0.6704 (8) | 0.3757 (6) | 0.0789 (19) | |
H11A | 0.9340 | 0.5844 | 0.3461 | 0.118* | |
H12A | 1.0201 | 0.6440 | 0.4380 | 0.118* | |
H13A | 1.0105 | 0.6995 | 0.3421 | 0.118* | |
C2A | 0.8225 (3) | 0.7627 (6) | 0.3729 (3) | 0.0452 (11) | |
C3A | 0.6804 (5) | 0.8559 (9) | 0.3921 (6) | 0.082 (2) | |
H31A | 0.6910 | 0.7654 | 0.4286 | 0.123* | |
H32A | 0.6248 | 0.8417 | 0.3330 | 0.123* | |
H33A | 0.6683 | 0.9400 | 0.4235 | 0.123* | |
C4A | 0.7902 (3) | 1.0382 (6) | 0.3709 (3) | 0.0428 (11) | |
C5A | 0.9071 (6) | 1.2172 (7) | 0.3588 (6) | 0.082 (2) | |
H51A | 0.8497 | 1.2713 | 0.3167 | 0.124* | |
H52A | 0.9545 | 1.2156 | 0.3349 | 0.124* | |
H53A | 0.9348 | 1.2671 | 0.4179 | 0.124* | |
C6A | 0.9466 (4) | 0.9430 (6) | 0.3792 (3) | 0.0446 (11) | |
S2B | 0.44426 (11) | 0.7099 (2) | 0.11826 (14) | 0.0716 (5) | |
S4B | 0.70323 (13) | 0.31913 (16) | 0.11122 (14) | 0.0722 (5) | |
S6B | 0.78327 (12) | 0.90675 (16) | 0.14314 (11) | 0.0659 (4) | |
N1B | 0.6159 (3) | 0.7919 (4) | 0.1277 (3) | 0.0435 (9) | |
N3B | 0.5873 (3) | 0.5297 (4) | 0.1279 (3) | 0.0435 (9) | |
N5B | 0.7287 (3) | 0.6173 (5) | 0.1171 (3) | 0.0476 (9) | |
C1B | 0.5855 (5) | 0.9502 (6) | 0.1282 (5) | 0.0688 (16) | |
H11B | 0.6296 | 0.9981 | 0.1851 | 0.103* | |
H12B | 0.5202 | 0.9522 | 0.1227 | 0.103* | |
H13B | 0.5869 | 1.0040 | 0.0771 | 0.103* | |
C2B | 0.5516 (4) | 0.6774 (6) | 0.1250 (3) | 0.0492 (11) | |
C3B | 0.5322 (5) | 0.4040 (7) | 0.1391 (5) | 0.0729 (17) | |
H31B | 0.4978 | 0.4375 | 0.1731 | 0.109* | |
H32B | 0.5764 | 0.3233 | 0.1723 | 0.109* | |
H33B | 0.4859 | 0.3678 | 0.0794 | 0.109* | |
C4B | 0.6730 (4) | 0.4951 (6) | 0.1187 (3) | 0.0455 (11) | |
C5B | 0.8167 (5) | 0.5908 (8) | 0.1040 (5) | 0.0750 (18) | |
H51B | 0.8394 | 0.6857 | 0.0914 | 0.113* | |
H52B | 0.8011 | 0.5226 | 0.0530 | 0.113* | |
H53B | 0.8670 | 0.5468 | 0.1592 | 0.113* | |
C6B | 0.7067 (4) | 0.7669 (5) | 0.1285 (3) | 0.0437 (11) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S2A | 0.0661 (9) | 0.0429 (8) | 0.0976 (11) | −0.0068 (7) | 0.0404 (8) | −0.0010 (7) |
S4A | 0.0638 (9) | 0.0467 (9) | 0.1034 (12) | 0.0146 (6) | 0.0449 (9) | −0.0005 (7) |
S6A | 0.0444 (7) | 0.0769 (11) | 0.0856 (10) | −0.0073 (7) | 0.0339 (7) | −0.0038 (8) |
N1A | 0.047 (2) | 0.042 (2) | 0.061 (2) | 0.0025 (18) | 0.0248 (19) | −0.0037 (19) |
N3A | 0.040 (2) | 0.035 (2) | 0.057 (2) | −0.0058 (16) | 0.0247 (18) | 0.0024 (17) |
N5A | 0.057 (3) | 0.044 (2) | 0.056 (2) | −0.0019 (19) | 0.024 (2) | −0.0008 (19) |
C1A | 0.065 (4) | 0.054 (4) | 0.128 (6) | 0.000 (3) | 0.052 (4) | −0.011 (4) |
C2A | 0.034 (2) | 0.051 (3) | 0.048 (2) | 0.002 (2) | 0.0158 (19) | −0.002 (2) |
C3A | 0.058 (3) | 0.090 (5) | 0.119 (6) | 0.001 (3) | 0.059 (4) | 0.014 (4) |
C4A | 0.038 (2) | 0.044 (3) | 0.049 (3) | 0.0006 (19) | 0.022 (2) | 0.001 (2) |
C5A | 0.085 (5) | 0.046 (3) | 0.114 (6) | −0.001 (3) | 0.043 (4) | 0.015 (3) |
C6A | 0.047 (3) | 0.048 (3) | 0.044 (2) | 0.005 (2) | 0.025 (2) | −0.001 (2) |
S2B | 0.0478 (8) | 0.0697 (11) | 0.1036 (12) | 0.0049 (7) | 0.0396 (8) | −0.0025 (9) |
S4B | 0.0802 (11) | 0.0409 (9) | 0.1069 (13) | 0.0099 (7) | 0.0520 (10) | −0.0020 (8) |
S6B | 0.0697 (10) | 0.0522 (9) | 0.0809 (10) | −0.0190 (7) | 0.0382 (8) | −0.0061 (7) |
N1B | 0.040 (2) | 0.036 (2) | 0.056 (2) | 0.0020 (16) | 0.0238 (17) | 0.0016 (17) |
N3B | 0.039 (2) | 0.039 (2) | 0.059 (2) | 0.0023 (17) | 0.0283 (18) | −0.0031 (17) |
N5B | 0.049 (2) | 0.048 (2) | 0.051 (2) | −0.0045 (19) | 0.0267 (18) | −0.0006 (18) |
C1B | 0.069 (4) | 0.038 (3) | 0.101 (5) | 0.006 (3) | 0.038 (3) | −0.004 (3) |
C2B | 0.051 (3) | 0.045 (3) | 0.048 (2) | 0.006 (2) | 0.020 (2) | −0.004 (2) |
C3B | 0.085 (4) | 0.041 (3) | 0.108 (5) | −0.012 (3) | 0.056 (4) | 0.007 (3) |
C4B | 0.050 (3) | 0.042 (3) | 0.045 (2) | −0.003 (2) | 0.021 (2) | 0.002 (2) |
C5B | 0.084 (4) | 0.063 (4) | 0.106 (5) | −0.003 (3) | 0.068 (4) | −0.002 (4) |
C6B | 0.049 (3) | 0.036 (2) | 0.046 (3) | −0.006 (2) | 0.021 (2) | −0.0013 (19) |
Geometric parameters (Å, º) top
S2A—C2A | 1.631 (5) | S2B—C2B | 1.616 (6) |
S4A—C4A | 1.626 (5) | S4B—C4B | 1.634 (5) |
S6A—C6A | 1.642 (5) | S6B—C6B | 1.638 (5) |
N1A—C1A | 1.491 (7) | N1B—C1B | 1.469 (7) |
N1A—C2A | 1.379 (6) | N1B—C2B | 1.392 (7) |
N1A—C6A | 1.356 (7) | N1B—C6B | 1.396 (6) |
N3A—C2A | 1.395 (6) | N3B—C2B | 1.400 (6) |
N3A—C3A | 1.496 (6) | N3B—C3B | 1.448 (6) |
N3A—C4A | 1.376 (6) | N3B—C4B | 1.413 (6) |
N5A—C4A | 1.399 (6) | N5B—C4B | 1.377 (6) |
N5A—C5A | 1.463 (8) | N5B—C5B | 1.467 (7) |
N5A—C6A | 1.409 (7) | N5B—C6B | 1.390 (7) |
| | | |
N1A—C2A—S2A | 123.7 (4) | N1B—C2B—S2B | 123.5 (4) |
N1A—C2A—N3A | 113.6 (4) | N1B—C2B—N3B | 114.3 (4) |
N1A—C6A—S6A | 123.7 (4) | N1B—C6B—S6B | 121.5 (4) |
N1A—C6A—N5A | 115.6 (4) | N3B—C2B—S2B | 122.2 (4) |
N3A—C2A—S2A | 122.6 (3) | N3B—C4B—S4B | 121.1 (4) |
N3A—C4A—S4A | 123.6 (4) | N5B—C4B—S4B | 122.7 (4) |
N3A—C4A—N5A | 114.1 (4) | N5B—C4B—N3B | 116.2 (4) |
N5A—C4A—S4A | 122.3 (4) | N5B—C6B—S6B | 122.1 (4) |
N5A—C6A—S6A | 120.6 (4) | N5B—C6B—N1B | 116.4 (4) |
C2A—N1A—C1A | 116.4 (4) | C2B—N1B—C1B | 117.8 (4) |
C2A—N3A—C3A | 116.8 (5) | C2B—N1B—C6B | 124.6 (4) |
C4A—N3A—C2A | 126.1 (4) | C2B—N3B—C3B | 118.3 (4) |
C4A—N3A—C3A | 117.1 (5) | C2B—N3B—C4B | 124.1 (4) |
C4A—N5A—C5A | 117.8 (5) | C4B—N3B—C3B | 117.7 (4) |
C4A—N5A—C6A | 123.5 (4) | C4B—N5B—C5B | 119.3 (5) |
C6A—N1A—C1A | 117.8 (4) | C4B—N5B—C6B | 123.3 (4) |
C6A—N1A—C2A | 125.7 (4) | C6B—N1B—C1B | 117.6 (4) |
C6A—N5A—C5A | 118.7 (5) | C6B—N5B—C5B | 117.4 (4) |
| | | |
C1A—N1A—C2A—S2A | −1.6 (7) | C1B—N1B—C2B—S2B | 2.6 (7) |
C6A—N1A—C2A—S2A | 176.0 (4) | C6B—N1B—C2B—S2B | −176.4 (4) |
C3A—N3A—C2A—S2A | 10.0 (7) | C3B—N3B—C2B—S2B | −9.4 (7) |
C4A—N3A—C2A—S2A | −168.6 (4) | C4B—N3B—C2B—S2B | 169.3 (4) |
C2A—N3A—C4A—S4A | 173.0 (4) | C2B—N3B—C4B—S4B | −173.1 (4) |
C3A—N3A—C4A—S4A | −5.6 (7) | C3B—N3B—C4B—S4B | 5.6 (7) |
C5A—N5A—C4A—S4A | −3.3 (7) | C5B—N5B—C4B—S4B | 2.8 (7) |
C6A—N5A—C4A—S4A | 175.5 (4) | C6B—N5B—C4B—S4B | −176.3 (4) |
C1A—N1A—C6A—S6A | −6.5 (7) | C1B—N1B—C6B—S6B | 7.8 (7) |
C2A—N1A—C6A—S6A | 176.0 (4) | C2B—N1B—C6B—S6B | −173.2 (4) |
C4A—N5A—C6A—S6A | −171.6 (4) | C4B—N5B—C6B—S6B | 169.9 (4) |
C5A—N5A—C6A—S6A | 7.2 (7) | C5B—N5B—C6B—S6B | −9.3 (7) |
C3A—N3A—C2A—N1A | −169.0 (5) | C3B—N3B—C2B—N1B | 171.1 (5) |
C4A—N3A—C2A—N1A | 12.5 (7) | C4B—N3B—C2B—N1B | −10.2 (7) |
C4A—N5A—C6A—N1A | 9.0 (7) | C4B—N5B—C6B—N1B | −9.6 (7) |
C5A—N5A—C6A—N1A | −172.1 (5) | C5B—N5B—C6B—N1B | 171.2 (5) |
C1A—N1A—C2A—N3A | 177.4 (5) | C1B—N1B—C2B—N3B | −177.9 (5) |
C6A—N1A—C2A—N3A | −5.1 (7) | C6B—N1B—C2B—N3B | 3.1 (7) |
C2A—N3A—C4A—N5A | −8.7 (7) | C5B—N5B—C4B—N3B | −177.6 (5) |
C3A—N3A—C4A—N5A | 172.7 (5) | C6B—N5B—C4B—N3B | 3.3 (7) |
C5A—N5A—C4A—N3A | 178.3 (5) | C2B—N3B—C4B—N5B | 7.4 (7) |
C6A—N5A—C4A—N3A | −2.8 (7) | C3B—N3B—C4B—N5B | −174.0 (5) |
C1A—N1A—C6A—N5A | 172.8 (5) | C1B—N1B—C6B—N5B | −172.7 (5) |
C2A—N1A—C6A—N5A | −4.7 (7) | C2B—N1B—C6B—N5B | 6.3 (7) |
Experimental details
| (I) | (II) | (III) | (IV) |
Crystal data |
Chemical formula | C6H9N3S3 | C6H9N3S3 | C6H9N3S3 | C6H9N3S3 |
Mr | 219.34 | 219.34 | 219.34 | 219.34 |
Crystal system, space group | Hexagonal, P63/m | Orthorhombic, Pnma | Triclinic, P1 | Monoclinic, C2 |
Temperature (K) | 293 | 293 | 293 | 293 |
a, b, c (Å) | 8.898 (2), 8.898 (2), 6.947 (2) | 16.566 (6), 6.813 (2), 8.926 (3) | 9.618 (5), 11.435 (6), 13.910 (7) | 15.247 (1), 8.792 (1), 16.165 (1) |
α, β, γ (°) | 90, 90, 120 | 90, 90, 90 | 107.30 (5), 100.65 (5), 93.05 (5) | 90, 116.60 (1), 90 |
V (Å3) | 476.3 (2) | 1007.4 (6) | 1425.9 (2) | 1937.5 (1) |
Z | 2 | 4 | 6 | 8 |
Radiation type | Mo Kα | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.73 | 0.69 | 0.73 | 0.71 |
Crystal size (mm) | 0.20 × 0.14 × 0.12 | 0.32 × 0.29 × 0.05 | 0.30 × 0.15 × 0.10 | 0.25 × 0.25 × 0.15 |
|
Data collection |
Diffractometer | PHILIPS PW 1100 four-circle diffractometer | PHILIPS PW 1100 four-circle diffractometer | Kappa CCD diffractometer | Nonius Kappa-CCD diffractometer |
Absorption correction | – | – | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 1053, 313, 226 | 2410, 970, 732 | 21286, 5970, 4595 | 15863, 3563, 3323 |
Rint | 0.084 | 0.060 | 0.019 | 0.083 |
(sin θ/λ)max (Å−1) | 0.595 | 0.595 | 0.649 | 0.603 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.088, 1.03 | 0.049, 0.117, 1.05 | 0.044, 0.129, 1.07 | 0.056, 0.149, 1.14 |
No. of reflections | 313 | 970 | 5970 | 3563 |
No. of parameters | 31 | 83 | 334 | 224 |
No. of restraints | 0 | 0 | 0 | 1 |
H-atom treatment | Only H-atom coordinates refined | H atoms treated by a mixture of independent and constrained refinement | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.23, −0.20 | 0.37, −0.22 | 0.38, −0.34 | 0.38, −0.32 |
Absolute structure | ? | ? | ? | Flack (1983) |
Absolute structure parameter | ? | ? | ? | −0.06 (14) |
Comparison of geometrical parameters (Å, °)
of the title compounds and their oxy analogues topOxy analogues are indicated by a subscript O. |
| I | IOb,e | II | IIOc | III | IIIOc | IV | IVOd,e |
N1-C2 | 1.335 (5) | 1.312 (4) | 1.359 (5) | 1.378 (5) | 1.375 (3) | 1.370 (4) | 1.390 (7) | 1.374 (4) |
N1-C6a | 1.344 (5) | 1.339 (4) | 1.309 (5) | 1.299 (4) | 1.394 (3) | 1.392 (5) | \dag | \dag |
N3-C2 | — | \dag | 1.386 (5) | 1.412 (5) | 1.390 (3) | 1.382 (4) | \dag | \dag |
N3-C4 | — | \dag | 1.356 (6) | 1.349 (4) | 1.371 (3) | 1.364 (5) | \dag | \dag |
N5-C4 | — | \dag | 1.315 (5) | 1.310 (4) | 1.297 (3) | 1.284 (4) | \dag | \dag |
N5-C6 | — | \dag | 1.341 (5) | 1.352 (4) | 1.364 (3) | 1.365 (5) | \dag | \dag |
| | | | | | | | |
C6-N1-C2a | 112.8 (5) | 113.3 (3) | 116.9 (3) | 117.3 (3) | 123.4 (2) | 123.4 (3) | 124.6 (4) | 124.2 (3) |
C2-N3-C4 | — | \dag | 120.0 (3) | 118.4 (3) | 120.0 (2) | 118.6 (3) | \dag | \dag |
C4-N5-C6 | — | \dag | 114.7 (3) | 113.5 (3) | 119.4 (2) | 118.2 (3) | \dag | \dag |
N1-C2-N3a | 127.2 (5) | 126.6 (3) | 118.0 (3) | 117.4 (3) | 115.1 (2) | 115.6 (3) | 115.0 (4) | 115.7 (3) |
N3-C4-N5 | \dag | \dag | 122.4 (4) | 124.9 (3) | 123.9 (2) | 126.1 (3) | \dag | \dag |
N5-C6-N1 | \dag | \dag | 128.1 (4) | 128.5 (3) | 118.0 (2) | 118.0 (3) | \dag | \dag |
| | | | | | | | |
| | | | | | | | |
r.m.s. of out-of-plane displacements | | | | | | | | |
| 0 | 0 | 0 | 0.0039 | 0.0075 | 0.0088 | 0.0391 | 0.0084 |
| | | | 0.0083 | 0.0142 | | 0.0400 | 0.0145 |
| | | | | 0.0198 | | | |
| | | | | | | | |
Interlayer spacing | | | | | | | | |
| 3.474 | 3.260 | 3.407 | 3.241 | 3.571 | 3.347 | 3.601 | 3.486 |
\dag Chemically equivalent bonds and angles were averaged.
The s.u. of the mean for all bonds and angles does not
exceed 0.01 Å and 1°, respectively.
Notes:
(a) For (I), C6 is C2i, N3 is N1ii [symmetry codes: (i) -x+y,-x,z;
(ii) -y,x-y,z];
(b) From Krygowski et al. (1997);
(c) From Kaftory & Handelsman-Benory (1994);
(d) From Thalladi et al. (1998);
(e) The s.u. values were estimated on the basis of data from
Cambridge Structural Database. |
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The crystal structures and thermal stability of trimethyl-substituted derivatives of mono-, di-, and tri-thiocyanuric acids have been studied in relation to the tendency of some of these compounds to undergo methyl rearrangements in the solid or liquid state (Paoloni et al., 1968; Tosato, 1982, 1984; Kaftory & Handelsman-Benory, 1994; Handelsman-Benory et al., 1995). The order of the methyl rearrangements in the oxygen analogues of the title compounds is (IO)→(IIO)→(IIIO)→(IVO), and the reactions take place in the liquid or in the solid state. The corresponding sulfur compounds display an opposite tendency to methyl rearrangements: (IV)→(III)→(II)→(I) and none of the reactions takes place in the solid state (see Figures 1–4). \sch
There are three molecules of (III) and two in (IV) in the asymmetric unit. No statistically significant differences in the values of bond lengths and angles were found.
Molecules of (I) and (II) lie in crystallographic mirror planes and molecules of (I) have threefold symmetry. Their planarity can be explained by an effective conjugation of N═C double bonds resulting from six and five pure sp2 hybridized atoms in the rings, respectively. On the other hand, r.m.s. deviations of the ring mean planes are 0.0075, 0.0142 and 0.0198 Å for the crystallographically independent molecules of (III) and 0.0391 and 0.0400 Å for (IV) (see Table 1). It should be noted that the molecules of trimethyl-substituted derivatives of cyanuric acid, the oxy analogues of compounds (I), (II) and (III) (Glowka & Iwanicka, 1989; Handelsman-Benory et al., 1995) are planar with r.m.s. deviations of the ring mean plane less than 0.01 Å. In molecules of the oxy analogue of (IV) the deviations are 0.0084 and 0.0145 Å for two crystallographically independent molecules (Thalladi et al., 1998). In general, the planarity of the triazine ring decreases with an increase in the number of sulfur atoms adjacent to methyl groups [such as in (III) and (IV)]. This tendency is a result of steric repulsion between the methyl group and the sulfur atom, which is more pronounced than that in the oxy analogues.
From their work on s-triazine derivatives, Glowka & Iwanicka (1989) concluded that the endocyclic bond angles at all N atoms are less than 120° while those at the C atoms are larger than 120°, irrespective of their hybridization. However, from the crystal structures of the title compounds it was found that whenever there is no formally endocyclic double bond at the particular atoms, the above conclusion does not hold. Bond angles at the sp3 hybridized N atoms range from 119.5 (2) to 126.1 (4)° and at the sp2 C atom (as thiocarbonyl) from 113.6 (4) to 118.2 (2)°.
HF/6–31G* (d, p) ab initio calculation (Greenberg & Kaftory, 1999) with full optimization of the molecular geometry of (I) and its mono-, di- and tri-oxy analogues reveals that the alternation of the C—N bond lengths observed in the oxy compound (IO) (Krygowski et al., 1997) hold also in the thio analogues. The C—N bonds that are cis to a methoxy or to a methylthio group are ca 0.015 Å shorter than the bonds that are trans to these groups. Krygowski et al. (1997) explain this phenomenon as a result of the `angular substituent effect' that enhances double-bond character of the adjacent C—N bond cis to these groups. This effect was found to be additive and supports the experimental results whereby all the methoxy (or methylthio) groups bend in the same sense (all clockwise or all anti-clockwise).
The effect of replacing the oxygen atoms by sulfur atoms on the geometries within the rings is minimal (see Table 1). However, the bond length alternation in (II) reveals that conjugation between the two C═N bonds is preferable to conjugation of C═N with C═S. Therefore the C6—N5 bond is shorter [1.342 (6) Å] than C2—N1 [1.359 (5) Å]. The ring structure of (III) shows that since the C6═S6 bond is strongly conjugated with C4═ N5, the lone pair at N1 prefers conjugation with C2═S2 to that with C6═ S6. As a result the C2—N1 bond [1.370 (4) Å] is shorter than C6—N1 [1.392 (5) Å].
In spite of the fact that the isomers crystallize in different crystallographic systems, all of them form planar layer structures with similar interlayer spacing in the range of 3.41 to 3.60 Å, approximately twice the Van der Waals radius of sulfur. For all four compounds the interlayer distances are 0.12–0.22 Å longer than those of the corresponding oxy analogues (see Table 1). The molecular volume in all four compounds lie in a relatively narrow range of 238–252 Å3. The crystal packings all show no abnormally short intermolecular contacts, either within or between the layers. It can be concluded that the crystal arrangements of all the isomers are controlled by weak Van-der-Waals bonds.