organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

N′-[(E)-4-Chloro­benzyl­­idene]pyridine-4-carbohydrazide monohydrate

aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri 574 199, India, and cDepartment of Chemistry, P.A. College of Engineering, Nadupadavu, Mangalore 574 153, India
*Correspondence e-mail: hkfun@usm.my

(Received 21 June 2012; accepted 26 June 2012; online 30 June 2012)

The asymmetric unit of the title compound, C13H10ClN3O·H2O, consists of two crystallographically independent Schiff base mol­ecules which exist in an E conformation with respect to the C=N double bond, and two independent water mol­ecules. In the crystal, the Schiff base and water mol­ecules are linked into a three-dimensional network via N—H⋯O, O—H⋯N, O—H⋯O and C—H⋯O hydrogen bonds. The crystal studied was a pseudo-merohedral twin with twin law (101 0-10 00-1) and a component ratio of 0.792 (2):0.208 (2).

Related literature

For background to terphenyls, see: Naveenkumar et al. (2010[Naveenkumar, H. S., Sadikun, A., Ibrahim, P., Yeap, C. S. & Fun, H.-K. (2010). Acta Cryst. E66, o1918-o1919.]); Chen (2006[Chen, S.-K. (2006). Acta Cryst. E62, o5352-o5353.]). For related structures, see: Fun, Quah, Shetty et al. (2012[Fun, H.-K., Quah, C. K., Shetty, D. N., Narayana, B. & Sarojini, B. K. (2012). Acta Cryst. E68, o1484.]); Fun, Quah, Shyma et al. (2012[Fun, H.-K., Quah, C. K., Shyma, P. C., Kalluraya, B. & Vidyashree, J. H. S. (2012). Acta Cryst. E68, o2122.]). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986[Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105-107.]).

[Scheme 1]

Experimental

Crystal data
  • C13H10ClN3O·H2O

  • Mr = 277.71

  • Monoclinic, P 21 /c

  • a = 14.1645 (7) Å

  • b = 14.6276 (7) Å

  • c = 14.0817 (7) Å

  • β = 119.220 (2)°

  • V = 2546.4 (2) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.30 mm−1

  • T = 100 K

  • 0.47 × 0.26 × 0.24 mm

Data collection
  • Bruker SMART APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009[Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]) Tmin = 0.871, Tmax = 0.931

  • 20683 measured reflections

  • 4458 independent reflections

  • 3995 reflections with I > 2σ(I)

  • Rint = 0.043

Refinement
  • R[F2 > 2σ(F2)] = 0.071

  • wR(F2) = 0.205

  • S = 1.06

  • 4458 reflections

  • 360 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.80 e Å−3

  • Δρmin = −0.55 e Å−3

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
N2A—H1NA⋯O1WA 1.00 1.88 2.838 (7) 160
N2B—H1NB⋯O1WBi 0.89 1.95 2.810 (7) 161
O1WA—H1WA⋯N1Aii 0.88 (9) 2.14 (8) 2.896 (7) 144 (6)
O1WA—H2WA⋯O1Biii 0.86 (10) 2.05 (9) 2.817 (6) 149 (9)
O1WA—H2WA⋯N3Biii 0.86 (10) 2.59 (10) 3.306 (6) 142 (8)
O1WB—H2WB⋯O1Aiv 0.73 (9) 2.19 (8) 2.843 (6) 150 (8)
O1WB—H1WB⋯N1Biv 0.81 (9) 2.00 (9) 2.798 (6) 166 (11)
C1A—H1AA⋯O1WA 0.95 2.49 3.321 (6) 146
C1A—H1AA⋯O1Biii 0.95 2.54 3.277 (7) 135
C7A—H7AA⋯O1WA 0.95 2.46 3.247 (7) 141
C1B—H1BA⋯O1WBi 0.95 2.43 3.201 (7) 138
C1B—H1BA⋯O1Av 0.95 2.52 3.230 (8) 131
Symmetry codes: (i) x-1, y, z; (ii) [-x+1, y+{\script{1\over 2}}, -z+{\script{3\over 2}}]; (iii) -x+1, -y+1, -z+2; (iv) [-x+1, y-{\script{1\over 2}}, -z+{\script{3\over 2}}]; (v) [-x, y-{\script{1\over 2}}, -z+{\script{3\over 2}}].

Data collection: APEX2 (Bruker, 2009[Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]); cell refinement: SAINT (Bruker, 2009[Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009[Spek, A. L. (2009). Acta Cryst. D65, 148-155.]).

Supporting information


Comment top

The pharmaceutical importance of isoniazid and its various derivatives are well documented and also the crystal structures of its Schiff base derivatives have been reported (Naveenkumar et al., 2010; Chen, 2006). Hence, we report herein the synthesis and crystal structure of title compound. The Schiff base, N'-[(E)-(4-chlorophenyl)methylidene] pyridine-4-carbohydrazide, is synthesized by condensation of isoniazid with 4-chlorobenzaldehyde in absolute alcohol in presence of hydrochloric acid. The Schiff base crystallized out as a hydrate to form the title compound.

The asymmetric unit of the Schiff base compound, (Fig. 1), consists of two crystallographically independent N'-[(E)-(4-chlorophenyl)methylidene]pyridine-4-carbohydrazide molecules and two water molecules. The Schiff base molecules exist in an E configuration with respect to the C7AN3A and C7BN3B double bonds. The pyridine rings (C1A/C2A/N1A/C3A/C4A/C5A & C1B/C2B/N1B/C3B/C4B/C5B) are approximately planar with maximum deviations of 0.016 (6) Å at atom C4A and 0.012 (5) Å at atom C6B. Bond lengths and angles are within the normal ranges and are comparable with the related structures (Fun, Quah, Shetty et al., 2012; Fun, Quah, Shyma et al., 2012).

In the crystal packing (Fig. 2), the molecules are linked into a three-dimensional network via intermolecular N2A—H1NA···O1WA, N2B—H1NB···O1WB, O1WA—H1WA···N1A, O1WA—H2WA···O1B, O1WA—H2WA···N3B, O1WB—H2WB···O1A, C1A—H1AA···O1WA, C1A—H1AA···O1B, C7A—H7AA···O1WA, C1B—H1BA···O1WB, O1WB—H1WB···N1B and C1B—H1BA···O1A hydrogen bonds (Table 1).

Related literature top

For background to terphenyls, see: Naveenkumar et al. (2010); Chen (2006). For related structures, see: Fun, Quah, Shetty et al. (2012); Fun, Quah, Shyma et al. (2012). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).

Experimental top

A mixture of isoniazid (1.4 g, 0.01 mol) and 4-chlorobenzaldehyde (1.4 g, 0.01 mol) in 15 ml of absolute alcohol containing 2 drops of hydrochloric acid was refluxed for about 3 h. Upon cooling, the solid was separated and was filtered and recrystallized from DMF. The Schiff base compound was crystallized out as a hydrate by slow evaporation in DMF. M.P.: 489 K.

Refinement top

The N- and O-bound H atoms were located from a difference Fourier map. The O-bound H atoms were refined freely, whereas the N-bound H atoms were refined with a riding model with Uiso(H) = 1.5 Ueq(N) [O—H = 0.73 (7) to 0.89 (8) Å; N—H = 0.89 and 1.00 Å]. The remaining H atoms were positioned geometrically and were refined with a riding model with Uiso(H) = 1.2 Ueq(C). The crystal studied was a twin with twin law, 101 010 001 and BASF = 0.208 (2).

Structure description top

The pharmaceutical importance of isoniazid and its various derivatives are well documented and also the crystal structures of its Schiff base derivatives have been reported (Naveenkumar et al., 2010; Chen, 2006). Hence, we report herein the synthesis and crystal structure of title compound. The Schiff base, N'-[(E)-(4-chlorophenyl)methylidene] pyridine-4-carbohydrazide, is synthesized by condensation of isoniazid with 4-chlorobenzaldehyde in absolute alcohol in presence of hydrochloric acid. The Schiff base crystallized out as a hydrate to form the title compound.

The asymmetric unit of the Schiff base compound, (Fig. 1), consists of two crystallographically independent N'-[(E)-(4-chlorophenyl)methylidene]pyridine-4-carbohydrazide molecules and two water molecules. The Schiff base molecules exist in an E configuration with respect to the C7AN3A and C7BN3B double bonds. The pyridine rings (C1A/C2A/N1A/C3A/C4A/C5A & C1B/C2B/N1B/C3B/C4B/C5B) are approximately planar with maximum deviations of 0.016 (6) Å at atom C4A and 0.012 (5) Å at atom C6B. Bond lengths and angles are within the normal ranges and are comparable with the related structures (Fun, Quah, Shetty et al., 2012; Fun, Quah, Shyma et al., 2012).

In the crystal packing (Fig. 2), the molecules are linked into a three-dimensional network via intermolecular N2A—H1NA···O1WA, N2B—H1NB···O1WB, O1WA—H1WA···N1A, O1WA—H2WA···O1B, O1WA—H2WA···N3B, O1WB—H2WB···O1A, C1A—H1AA···O1WA, C1A—H1AA···O1B, C7A—H7AA···O1WA, C1B—H1BA···O1WB, O1WB—H1WB···N1B and C1B—H1BA···O1A hydrogen bonds (Table 1).

For background to terphenyls, see: Naveenkumar et al. (2010); Chen (2006). For related structures, see: Fun, Quah, Shetty et al. (2012); Fun, Quah, Shyma et al. (2012). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).

Computing details top

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).

Figures top
[Figure 1] Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids.
[Figure 2] Fig. 2. The crystal packing of the title compound, viewed along the b axis. H atoms not involved in the intermolecular interactions (dashed lines) have been omitted for clarity.
N'-[(E)-4-Chlorobenzylidene]pyridine-4-carbohydrazide monohydrate top
Crystal data top
C13H10ClN3O·H2OF(000) = 1152
Mr = 277.71Dx = 1.449 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8764 reflections
a = 14.1645 (7) Åθ = 2.8–29.9°
b = 14.6276 (7) ŵ = 0.30 mm1
c = 14.0817 (7) ÅT = 100 K
β = 119.220 (2)°Block, yellow
V = 2546.4 (2) Å30.47 × 0.26 × 0.24 mm
Z = 8
Data collection top
Bruker SMART APEXII CCD area-detector
diffractometer
4458 independent reflections
Radiation source: fine-focus sealed tube3995 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
φ and ω scansθmax = 25.0°, θmin = 1.4°
Absorption correction: multi-scan
(SADABS; Bruker, 2009)
h = 1616
Tmin = 0.871, Tmax = 0.931k = 1713
20683 measured reflectionsl = 1616
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.205H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.123P)2 + 5.736P]
where P = (Fo2 + 2Fc2)/3
4458 reflections(Δ/σ)max = 0.001
360 parametersΔρmax = 0.80 e Å3
0 restraintsΔρmin = 0.55 e Å3
Crystal data top
C13H10ClN3O·H2OV = 2546.4 (2) Å3
Mr = 277.71Z = 8
Monoclinic, P21/cMo Kα radiation
a = 14.1645 (7) ŵ = 0.30 mm1
b = 14.6276 (7) ÅT = 100 K
c = 14.0817 (7) Å0.47 × 0.26 × 0.24 mm
β = 119.220 (2)°
Data collection top
Bruker SMART APEXII CCD area-detector
diffractometer
4458 independent reflections
Absorption correction: multi-scan
(SADABS; Bruker, 2009)
3995 reflections with I > 2σ(I)
Tmin = 0.871, Tmax = 0.931Rint = 0.043
20683 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0710 restraints
wR(F2) = 0.205H atoms treated by a mixture of independent and constrained refinement
S = 1.06Δρmax = 0.80 e Å3
4458 reflectionsΔρmin = 0.55 e Å3
360 parameters
Special details top

Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cl1A0.07219 (10)1.37835 (8)0.59204 (11)0.0295 (3)
O1A0.1241 (3)0.7654 (2)0.6526 (3)0.0223 (7)
N1A0.4094 (3)0.5253 (3)0.7583 (3)0.0237 (9)
H1NA0.35670.85190.75100.035*
N2A0.2758 (3)0.8520 (3)0.7089 (3)0.0191 (8)
H1NB0.14420.16320.86940.029*
N3A0.2166 (3)0.9323 (3)0.6802 (3)0.0206 (8)
C1A0.4010 (4)0.6845 (3)0.7977 (4)0.0222 (10)
H1AA0.43710.73750.83800.027*
C2A0.4562 (4)0.6018 (3)0.8149 (4)0.0247 (11)
H2AA0.53030.59940.86900.030*
C3A0.3042 (4)0.5298 (3)0.6855 (4)0.0233 (10)
H3AA0.27000.47610.64540.028*
C4A0.2420 (4)0.6080 (3)0.6647 (4)0.0228 (10)
H4AA0.16690.60730.61380.027*
C5A0.2924 (4)0.6874 (3)0.7204 (4)0.0188 (10)
C6A0.2226 (4)0.7718 (3)0.6916 (4)0.0179 (10)
C7A0.2727 (4)1.0055 (3)0.6964 (4)0.0213 (10)
H7AA0.34881.00110.72560.026*
C8A0.2212 (4)1.0954 (3)0.6706 (4)0.0208 (10)
C9A0.1071 (4)1.1091 (3)0.6206 (4)0.0225 (11)
H9AA0.06091.05740.60280.027*
C10A0.0632 (4)1.1930 (3)0.5980 (4)0.0230 (10)
H10A0.01301.20050.56460.028*
C11A0.1303 (4)1.2690 (3)0.6241 (4)0.0192 (10)
C12A0.2426 (4)1.2607 (3)0.6729 (4)0.0223 (10)
H12A0.28751.31320.69040.027*
C13A0.2864 (4)1.1740 (3)0.6951 (4)0.0220 (10)
H13A0.36271.16710.72780.026*
O1WA0.4993 (3)0.8952 (3)0.8295 (4)0.0354 (9)
Cl1B0.42027 (11)0.36679 (8)1.05982 (11)0.0290 (3)
O1B0.3756 (3)0.2301 (2)1.0041 (3)0.0270 (8)
N1B0.1149 (3)0.4890 (3)0.8468 (3)0.0241 (9)
N2B0.2152 (3)0.1541 (3)0.9120 (3)0.0188 (8)
N3B0.2689 (3)0.0713 (3)0.9449 (3)0.0225 (9)
C1B0.1096 (4)0.3298 (3)0.8844 (4)0.0210 (10)
H1BA0.06960.27910.88810.025*
C2B0.0618 (4)0.4152 (3)0.8538 (4)0.0211 (10)
H2BA0.01140.42200.83710.025*
C3B0.2179 (4)0.4770 (3)0.8718 (4)0.0231 (10)
H3BA0.25620.52860.86730.028*
C4B0.2721 (4)0.3956 (3)0.9034 (4)0.0225 (10)
H4BA0.34570.39150.92050.027*
C5B0.2176 (4)0.3195 (3)0.9099 (4)0.0192 (10)
C6B0.2767 (4)0.2306 (3)0.9467 (4)0.0179 (10)
C7B0.2105 (4)0.0009 (3)0.9066 (4)0.0214 (10)
H7BA0.13510.00420.85760.026*
C8B0.2620 (4)0.0915 (3)0.9397 (4)0.0213 (10)
C9B0.3751 (4)0.1005 (4)1.0003 (4)0.0273 (11)
H9BA0.41890.04731.01680.033*
C10B0.4230 (4)0.1829 (4)1.0357 (4)0.0258 (11)
H10B0.49950.18761.07670.031*
C11B0.3585 (4)0.2605 (3)1.0112 (4)0.0202 (10)
C12B0.2471 (4)0.2557 (3)0.9494 (4)0.0202 (10)
H12B0.20420.30950.93150.024*
C13B0.1991 (4)0.1706 (3)0.9140 (4)0.0219 (10)
H13B0.12260.16610.87190.026*
O1WB0.9892 (3)0.1399 (3)0.7853 (4)0.0367 (10)
H1WA0.520 (6)0.914 (5)0.783 (6)0.05 (2)*
H2WA0.551 (7)0.876 (6)0.890 (8)0.08 (3)*
H1WB0.960 (7)0.101 (6)0.739 (7)0.06 (3)*
H2WB0.955 (6)0.155 (5)0.808 (6)0.04 (2)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cl1A0.0284 (7)0.0147 (6)0.0418 (8)0.0036 (5)0.0143 (6)0.0003 (5)
O1A0.0173 (16)0.0182 (18)0.0292 (18)0.0014 (13)0.0097 (14)0.0030 (14)
N1A0.031 (2)0.017 (2)0.029 (2)0.0044 (17)0.0186 (19)0.0044 (17)
N2A0.0169 (19)0.0136 (19)0.025 (2)0.0003 (16)0.0090 (17)0.0039 (16)
N3A0.023 (2)0.014 (2)0.024 (2)0.0019 (16)0.0108 (17)0.0050 (16)
C1A0.028 (3)0.015 (2)0.023 (2)0.000 (2)0.013 (2)0.0009 (19)
C2A0.029 (3)0.020 (2)0.024 (2)0.008 (2)0.012 (2)0.004 (2)
C3A0.028 (3)0.015 (2)0.032 (3)0.003 (2)0.018 (2)0.000 (2)
C4A0.024 (3)0.018 (2)0.026 (3)0.003 (2)0.011 (2)0.002 (2)
C5A0.021 (2)0.017 (2)0.023 (2)0.0025 (19)0.0151 (19)0.0068 (19)
C6A0.020 (2)0.016 (2)0.019 (2)0.0012 (18)0.0097 (19)0.0030 (18)
C7A0.020 (2)0.017 (2)0.024 (2)0.0002 (19)0.009 (2)0.004 (2)
C8A0.031 (3)0.012 (2)0.021 (2)0.002 (2)0.014 (2)0.0017 (19)
C9A0.036 (3)0.017 (2)0.016 (2)0.014 (2)0.013 (2)0.0015 (18)
C10A0.023 (2)0.023 (3)0.024 (2)0.003 (2)0.012 (2)0.004 (2)
C11A0.024 (2)0.014 (2)0.021 (2)0.0035 (18)0.013 (2)0.0058 (18)
C12A0.025 (2)0.011 (2)0.030 (3)0.0074 (19)0.013 (2)0.0045 (19)
C13A0.017 (2)0.018 (2)0.027 (2)0.0012 (19)0.007 (2)0.000 (2)
O1WA0.0234 (19)0.034 (2)0.038 (2)0.0067 (17)0.0060 (18)0.0152 (18)
Cl1B0.0340 (7)0.0176 (6)0.0350 (7)0.0075 (5)0.0164 (6)0.0055 (5)
O1B0.0162 (17)0.024 (2)0.0332 (19)0.0029 (14)0.0061 (15)0.0080 (15)
N1B0.029 (2)0.015 (2)0.026 (2)0.0047 (17)0.0112 (18)0.0035 (16)
N2B0.0162 (19)0.0140 (19)0.022 (2)0.0025 (16)0.0062 (16)0.0010 (16)
N3B0.023 (2)0.013 (2)0.031 (2)0.0042 (17)0.0123 (18)0.0022 (17)
C1B0.025 (2)0.016 (2)0.022 (2)0.0002 (19)0.011 (2)0.0015 (19)
C2B0.021 (2)0.015 (2)0.024 (2)0.0032 (19)0.009 (2)0.0004 (19)
C3B0.025 (3)0.015 (2)0.028 (3)0.004 (2)0.011 (2)0.002 (2)
C4B0.023 (2)0.017 (2)0.027 (2)0.002 (2)0.012 (2)0.000 (2)
C5B0.019 (2)0.018 (2)0.019 (2)0.0040 (19)0.0082 (19)0.0029 (19)
C6B0.022 (2)0.019 (3)0.015 (2)0.0032 (19)0.0102 (19)0.0037 (18)
C7B0.023 (2)0.013 (2)0.027 (2)0.0012 (19)0.011 (2)0.0044 (19)
C8B0.028 (3)0.015 (2)0.023 (2)0.002 (2)0.013 (2)0.0004 (19)
C9B0.037 (3)0.021 (3)0.035 (3)0.012 (2)0.026 (2)0.012 (2)
C10B0.018 (2)0.038 (3)0.021 (2)0.010 (2)0.008 (2)0.008 (2)
C11B0.025 (2)0.016 (2)0.021 (2)0.006 (2)0.012 (2)0.0010 (18)
C12B0.027 (2)0.011 (2)0.021 (2)0.002 (2)0.011 (2)0.0016 (18)
C13B0.021 (2)0.020 (2)0.022 (2)0.003 (2)0.009 (2)0.003 (2)
O1WB0.024 (2)0.031 (2)0.053 (3)0.0026 (17)0.017 (2)0.022 (2)
Geometric parameters (Å, º) top
Cl1A—C11A1.754 (5)Cl1B—C11B1.751 (5)
O1A—C6A1.228 (6)O1B—C6B1.229 (6)
N1A—C3A1.336 (7)N1B—C3B1.335 (6)
N1A—C2A1.345 (7)N1B—C2B1.346 (6)
N2A—C6A1.351 (6)N2B—C6B1.355 (6)
N2A—N3A1.385 (5)N2B—N3B1.384 (5)
N2A—H1NA1.0006N2B—H1NB0.8938
N3A—C7A1.286 (6)N3B—C7B1.286 (6)
C1A—C5A1.385 (7)C1B—C2B1.386 (7)
C1A—C2A1.396 (7)C1B—C5B1.398 (7)
C1A—H1AA0.9500C1B—H1BA0.9500
C2A—H2AA0.9500C2B—H2BA0.9500
C3A—C4A1.385 (7)C3B—C4B1.368 (7)
C3A—H3AA0.9500C3B—H3BA0.9500
C4A—C5A1.388 (7)C4B—C5B1.384 (7)
C4A—H4AA0.9500C4B—H4BA0.9500
C5A—C6A1.508 (6)C5B—C6B1.495 (6)
C7A—C8A1.460 (6)C7B—C8B1.475 (7)
C7A—H7AA0.9500C7B—H7BA0.9500
C8A—C13A1.408 (7)C8B—C13B1.395 (7)
C8A—C9A1.428 (7)C8B—C9B1.405 (7)
C9A—C10A1.342 (7)C9B—C10B1.354 (8)
C9A—H9AA0.9500C9B—H9BA0.9500
C10A—C11A1.390 (7)C10B—C11B1.391 (7)
C10A—H10A0.9500C10B—H10B0.9500
C11A—C12A1.396 (7)C11B—C12B1.383 (7)
C12A—C13A1.379 (7)C12B—C13B1.389 (7)
C12A—H12A0.9500C12B—H12B0.9500
C13A—H13A0.9500C13B—H13B0.9500
O1WA—H1WA0.89 (8)O1WB—H1WB0.81 (9)
O1WA—H2WA0.86 (9)O1WB—H2WB0.73 (7)
C3A—N1A—C2A117.1 (4)C3B—N1B—C2B116.9 (4)
C6A—N2A—N3A118.6 (4)C6B—N2B—N3B116.8 (4)
C6A—N2A—H1NA118.9C6B—N2B—H1NB115.7
N3A—N2A—H1NA121.9N3B—N2B—H1NB127.6
C7A—N3A—N2A114.9 (4)C7B—N3B—N2B116.2 (4)
C5A—C1A—C2A118.4 (5)C2B—C1B—C5B119.0 (4)
C5A—C1A—H1AA120.8C2B—C1B—H1BA120.5
C2A—C1A—H1AA120.8C5B—C1B—H1BA120.5
N1A—C2A—C1A123.1 (5)N1B—C2B—C1B122.7 (4)
N1A—C2A—H2AA118.5N1B—C2B—H2BA118.7
C1A—C2A—H2AA118.5C1B—C2B—H2BA118.7
N1A—C3A—C4A124.0 (5)N1B—C3B—C4B124.6 (4)
N1A—C3A—H3AA118.0N1B—C3B—H3BA117.7
C4A—C3A—H3AA118.0C4B—C3B—H3BA117.7
C3A—C4A—C5A118.2 (5)C3B—C4B—C5B118.6 (4)
C3A—C4A—H4AA120.9C3B—C4B—H4BA120.7
C5A—C4A—H4AA120.9C5B—C4B—H4BA120.7
C1A—C5A—C4A119.1 (4)C4B—C5B—C1B118.2 (4)
C1A—C5A—C6A124.6 (4)C4B—C5B—C6B119.1 (4)
C4A—C5A—C6A116.4 (4)C1B—C5B—C6B122.7 (4)
O1A—C6A—N2A123.9 (4)O1B—C6B—N2B123.9 (4)
O1A—C6A—C5A120.7 (4)O1B—C6B—C5B120.0 (4)
N2A—C6A—C5A115.3 (4)N2B—C6B—C5B116.1 (4)
N3A—C7A—C8A121.0 (4)N3B—C7B—C8B119.2 (4)
N3A—C7A—H7AA119.5N3B—C7B—H7BA120.4
C8A—C7A—H7AA119.5C8B—C7B—H7BA120.4
C13A—C8A—C9A117.1 (4)C13B—C8B—C9B118.3 (5)
C13A—C8A—C7A119.1 (4)C13B—C8B—C7B120.5 (4)
C9A—C8A—C7A123.8 (4)C9B—C8B—C7B121.1 (4)
C10A—C9A—C8A121.8 (4)C10B—C9B—C8B121.6 (5)
C10A—C9A—H9AA119.1C10B—C9B—H9BA119.2
C8A—C9A—H9AA119.1C8B—C9B—H9BA119.2
C9A—C10A—C11A119.4 (5)C9B—C10B—C11B119.0 (4)
C9A—C10A—H10A120.3C9B—C10B—H10B120.5
C11A—C10A—H10A120.3C11B—C10B—H10B120.5
C10A—C11A—C12A121.8 (4)C12B—C11B—C10B121.6 (4)
C10A—C11A—Cl1A119.1 (4)C12B—C11B—Cl1B119.4 (4)
C12A—C11A—Cl1A119.1 (3)C10B—C11B—Cl1B119.1 (4)
C13A—C12A—C11A118.1 (4)C11B—C12B—C13B118.7 (4)
C13A—C12A—H12A120.9C11B—C12B—H12B120.7
C11A—C12A—H12A120.9C13B—C12B—H12B120.7
C12A—C13A—C8A121.7 (4)C12B—C13B—C8B120.7 (4)
C12A—C13A—H13A119.1C12B—C13B—H13B119.6
C8A—C13A—H13A119.1C8B—C13B—H13B119.6
H1WA—O1WA—H2WA114 (8)H1WB—O1WB—H2WB111 (8)
C6A—N2A—N3A—C7A178.2 (4)C6B—N2B—N3B—C7B176.3 (4)
C3A—N1A—C2A—C1A2.4 (7)C3B—N1B—C2B—C1B0.6 (7)
C5A—C1A—C2A—N1A1.4 (7)C5B—C1B—C2B—N1B0.4 (7)
C2A—N1A—C3A—C4A0.6 (7)C2B—N1B—C3B—C4B0.2 (7)
N1A—C3A—C4A—C5A2.1 (7)N1B—C3B—C4B—C5B0.3 (8)
C2A—C1A—C5A—C4A1.3 (7)C3B—C4B—C5B—C1B0.5 (7)
C2A—C1A—C5A—C6A179.1 (4)C3B—C4B—C5B—C6B178.7 (4)
C3A—C4A—C5A—C1A3.0 (7)C2B—C1B—C5B—C4B0.1 (7)
C3A—C4A—C5A—C6A177.4 (4)C2B—C1B—C5B—C6B178.2 (4)
N3A—N2A—C6A—O1A0.6 (7)N3B—N2B—C6B—O1B0.4 (7)
N3A—N2A—C6A—C5A177.3 (4)N3B—N2B—C6B—C5B179.6 (4)
C1A—C5A—C6A—O1A155.3 (4)C4B—C5B—C6B—O1B24.6 (7)
C4A—C5A—C6A—O1A24.3 (6)C1B—C5B—C6B—O1B153.5 (5)
C1A—C5A—C6A—N2A26.7 (6)C4B—C5B—C6B—N2B154.6 (4)
C4A—C5A—C6A—N2A153.8 (4)C1B—C5B—C6B—N2B27.3 (6)
N2A—N3A—C7A—C8A179.6 (4)N2B—N3B—C7B—C8B178.9 (4)
N3A—C7A—C8A—C13A176.6 (4)N3B—C7B—C8B—C13B169.7 (4)
N3A—C7A—C8A—C9A3.9 (7)N3B—C7B—C8B—C9B8.5 (7)
C13A—C8A—C9A—C10A0.3 (7)C13B—C8B—C9B—C10B1.5 (7)
C7A—C8A—C9A—C10A179.8 (4)C7B—C8B—C9B—C10B176.7 (4)
C8A—C9A—C10A—C11A0.1 (7)C8B—C9B—C10B—C11B0.1 (7)
C9A—C10A—C11A—C12A0.2 (7)C9B—C10B—C11B—C12B1.6 (7)
C9A—C10A—C11A—Cl1A178.8 (4)C9B—C10B—C11B—Cl1B178.5 (4)
C10A—C11A—C12A—C13A0.1 (7)C10B—C11B—C12B—C13B1.9 (7)
Cl1A—C11A—C12A—C13A178.5 (4)Cl1B—C11B—C12B—C13B178.2 (4)
C11A—C12A—C13A—C8A0.5 (7)C11B—C12B—C13B—C8B0.4 (7)
C9A—C8A—C13A—C12A0.6 (7)C9B—C8B—C13B—C12B1.2 (7)
C7A—C8A—C13A—C12A179.9 (5)C7B—C8B—C13B—C12B177.0 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2A—H1NA···O1WA1.001.882.838 (7)160
N2B—H1NB···O1WBi0.891.952.810 (7)161
O1WA—H1WA···N1Aii0.88 (9)2.14 (8)2.896 (7)144 (6)
O1WA—H2WA···O1Biii0.86 (10)2.05 (9)2.817 (6)149 (9)
O1WA—H2WA···N3Biii0.86 (10)2.59 (10)3.306 (6)142 (8)
O1WB—H2WB···O1Aiv0.73 (9)2.19 (8)2.843 (6)150 (8)
O1WB—H1WB···N1Biv0.81 (9)2.00 (9)2.798 (6)166 (11)
C1A—H1AA···O1WA0.952.493.321 (6)146
C1A—H1AA···O1Biii0.952.543.277 (7)135
C7A—H7AA···O1WA0.952.463.247 (7)141
C1B—H1BA···O1WBi0.952.433.201 (7)138
C1B—H1BA···O1Av0.952.523.230 (8)131
Symmetry codes: (i) x1, y, z; (ii) x+1, y+1/2, z+3/2; (iii) x+1, y+1, z+2; (iv) x+1, y1/2, z+3/2; (v) x, y1/2, z+3/2.

Experimental details

Crystal data
Chemical formulaC13H10ClN3O·H2O
Mr277.71
Crystal system, space groupMonoclinic, P21/c
Temperature (K)100
a, b, c (Å)14.1645 (7), 14.6276 (7), 14.0817 (7)
β (°) 119.220 (2)
V3)2546.4 (2)
Z8
Radiation typeMo Kα
µ (mm1)0.30
Crystal size (mm)0.47 × 0.26 × 0.24
Data collection
DiffractometerBruker SMART APEXII CCD area-detector
Absorption correctionMulti-scan
(SADABS; Bruker, 2009)
Tmin, Tmax0.871, 0.931
No. of measured, independent and
observed [I > 2σ(I)] reflections
20683, 4458, 3995
Rint0.043
(sin θ/λ)max1)0.594
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.071, 0.205, 1.06
No. of reflections4458
No. of parameters360
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.80, 0.55

Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2A—H1NA···O1WA1.001.882.838 (7)160
N2B—H1NB···O1WBi0.891.952.810 (7)161
O1WA—H1WA···N1Aii0.88 (9)2.14 (8)2.896 (7)144 (6)
O1WA—H2WA···O1Biii0.86 (10)2.05 (9)2.817 (6)149 (9)
O1WA—H2WA···N3Biii0.86 (10)2.59 (10)3.306 (6)142 (8)
O1WB—H2WB···O1Aiv0.73 (9)2.19 (8)2.843 (6)150 (8)
O1WB—H1WB···N1Biv0.81 (9)2.00 (9)2.798 (6)166 (11)
C1A—H1AA···O1WA0.952.493.321 (6)146
C1A—H1AA···O1Biii0.952.543.277 (7)135
C7A—H7AA···O1WA0.952.463.247 (7)141
C1B—H1BA···O1WBi0.952.433.201 (7)138
C1B—H1BA···O1Av0.952.523.230 (8)131
Symmetry codes: (i) x1, y, z; (ii) x+1, y+1/2, z+3/2; (iii) x+1, y+1, z+2; (iv) x+1, y1/2, z+3/2; (v) x, y1/2, z+3/2.
 

Footnotes

Thomson Reuters ResearcherID: A-3561-2009.

§Thomson Reuters ResearcherID: C-7581-2009.

Acknowledgements

HKF and WSL thank Universiti Sains Malaysia (USM) for the Research University Grant (1001/PFIZIK/811160). WSL also thanks the Malaysian Government and USM for the post as Research Officer under the Research University Grant (1001/PFIZIK/811160). BN thanks the UGC SAP for financial assistance for the purchase of chemicals. DNS thanks UGC–RFSMS scheme (under SAP-Phase1) for financial assistance and Mangalore University for research facilities.

References

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First citationFun, H.-K., Quah, C. K., Shyma, P. C., Kalluraya, B. & Vidyashree, J. H. S. (2012). Acta Cryst. E68, o2122.  CSD CrossRef IUCr Journals Google Scholar
First citationNaveenkumar, H. S., Sadikun, A., Ibrahim, P., Yeap, C. S. & Fun, H.-K. (2010). Acta Cryst. E66, o1918–o1919.  Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
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First citationSpek, A. L. (2009). Acta Cryst. D65, 148–155.  Web of Science CrossRef CAS IUCr Journals Google Scholar

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