structural genomics communications
Almost all successful protein structure-determination projects in the public sector culminate in a structure deposition to the Protein Data Bank (PDB). In order to expedite the deposition proces, Deposit3D has been developed. This command-line script calculates or gathers all the required structure-deposition information and outputs this data into a mmCIF file for subsequent upload through the RCSB PDB ADIT interface. Deposit3D might be particularly useful for structural genomics pipeline projects because it allows workers involved with various stages of a structure-determination project to pool their different categories of annotation information before starting a deposition session.
Supporting information
Text file https://doi.org/10.1107/S1744309105026126/hi5569sup1.txt | |
Text file https://doi.org/10.1107/S1744309105026126/hi5569sup2.txt | |
Text file https://doi.org/10.1107/S1744309105026126/hi5569sup3.txt |