Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270106000874/gz1026sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270106000874/gz1026Isup2.hkl |
CCDC reference: 299639
The air-dried and crushed leaves of S. chamaejasme (2 kg) were extracted three times with 95% ethanol (36 l) for 30 min (for each extraction) by ultrasound-assisted leaching, and the extract after concentration was subsequently partitioned with petrol and acetone. The acetone extract (86 g) was subjected to repeated column chromatograph over silica gel, using petroleum ether–acetone mixtures of increasing polarity as eluants. The petroleum ether–acetone (7:3) fraction gave daphnoretin (52 mg). All purification steps were carried out at room temperature. Crystals grew in a mixed solution of ethanol and acetone (1:1). Daphnoretin was then recrystallized from CHCl3–MeOH (1:1) to give colorless blocks.
Atoms H6OA and H6OB were refined isotropically, with the O—H distances restrained to 0.88</span>(2) and 0.87<span style=" font-weight:600;">(2) Å. [Are these the actual restraints or the final refined values? The value of the initial restraint should be given here.] All other H atoms were placed in geometrically idealized positions and refined as riding atoms, with C—H distances of 0.93 (chromene) and 0.96 Å (methyl), and with Uiso(H) values of 1.2 (chromene) or 1.5(methyl) times Ueq(C).
Data collection: PROCESS-AUTO (Rigaku Corporation, 1998); cell refinement: PROCESS-AUTO; data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL-Plus (Sheldrick, 1990); software used to prepare material for publication: program(s) (references)?.
C19H12O7 | Z = 4 |
Mr = 352.29 | F(000) = 728 |
Triclinic, P1 | Dx = 1.503 Mg m−3 |
a = 7.659 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 13.872 (5) Å | Cell parameters from 8396 reflections |
c = 16.479 (5) Å | θ = 1.4–25.9° |
α = 113.175 (5)° | µ = 0.12 mm−1 |
β = 99.171 (6)° | T = 293 K |
γ = 96.799 (5)° | Block, colorless |
V = 1557.0 (10) Å3 | 0.31 × 0.16 × 0.11 mm |
Rigaku R-AXIS RAPID diffractometer | 5966 independent reflections |
Radiation source: fine-focus sealed tube | 3894 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
Detector resolution: 10.0 pixels mm-1 | θmax = 26.0°, θmin = 1.4° |
ω scans | h = −8→9 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −17→17 |
Tmin = 0.966, Tmax = 0.985 | l = −20→19 |
8458 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.093 | H-atom parameters constrained |
S = 0.95 | w = 1/[σ2(Fo2) + (0.0306P)2] where P = (Fo2 + 2Fc2)/3 |
5966 reflections | (Δ/σ)max = 0.001 |
477 parameters | Δρmax = 0.17 e Å−3 |
0 restraints | Δρmin = −0.17 e Å−3 |
C19H12O7 | γ = 96.799 (5)° |
Mr = 352.29 | V = 1557.0 (10) Å3 |
Triclinic, P1 | Z = 4 |
a = 7.659 (3) Å | Mo Kα radiation |
b = 13.872 (5) Å | µ = 0.12 mm−1 |
c = 16.479 (5) Å | T = 293 K |
α = 113.175 (5)° | 0.31 × 0.16 × 0.11 mm |
β = 99.171 (6)° |
Rigaku R-AXIS RAPID diffractometer | 5966 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 3894 reflections with I > 2σ(I) |
Tmin = 0.966, Tmax = 0.985 | Rint = 0.032 |
8458 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.093 | H-atom parameters constrained |
S = 0.95 | Δρmax = 0.17 e Å−3 |
5966 reflections | Δρmin = −0.17 e Å−3 |
477 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1A | 0.4428 (2) | 0.27260 (14) | 0.00204 (13) | 0.0388 (5) | |
C2A | 0.4862 (2) | 0.28008 (14) | 0.08964 (12) | 0.0415 (5) | |
H2A | 0.4467 | 0.3303 | 0.1360 | 0.050* | |
C3A | 0.5883 (2) | 0.21244 (15) | 0.10721 (12) | 0.0427 (5) | |
H3A | 0.6198 | 0.2185 | 0.1662 | 0.051* | |
C4A | 0.6458 (2) | 0.13477 (14) | 0.03831 (12) | 0.0375 (5) | |
C5A | 0.7443 (2) | 0.05791 (15) | 0.04906 (13) | 0.0452 (5) | |
H5A | 0.7830 | 0.0612 | 0.1067 | 0.054* | |
C6A | 0.7825 (2) | −0.01894 (15) | −0.02211 (14) | 0.0460 (5) | |
H6A | 0.8441 | −0.0692 | −0.0134 | 0.055* | |
C7A | 0.7295 (3) | −0.02455 (16) | −0.11155 (15) | 0.0473 (5) | |
C8A | 0.5936 (2) | 0.12851 (14) | −0.04881 (12) | 0.0363 (4) | |
C9A | 0.4956 (2) | 0.19686 (14) | −0.06798 (12) | 0.0414 (5) | |
H9A | 0.4659 | 0.1921 | −0.1266 | 0.050* | |
C10A | 0.2349 (3) | 0.39021 (15) | 0.03182 (12) | 0.0402 (5) | |
C11A | 0.2546 (3) | 0.49625 (15) | 0.07293 (12) | 0.0416 (5) | |
H11A | 0.3566 | 0.5399 | 0.0729 | 0.050* | |
C12A | 0.1196 (2) | 0.54341 (14) | 0.11712 (11) | 0.0365 (4) | |
C13A | 0.1265 (3) | 0.65387 (14) | 0.16137 (12) | 0.0411 (5) | |
H13A | 0.2248 | 0.7017 | 0.1633 | 0.049* | |
C14A | −0.0092 (3) | 0.69260 (14) | 0.20180 (12) | 0.0390 (5) | |
C15A | −0.1591 (3) | 0.62015 (15) | 0.19821 (12) | 0.0401 (5) | |
C16A | −0.1681 (3) | 0.51251 (15) | 0.15469 (12) | 0.0426 (5) | |
H16A | −0.2671 | 0.4647 | 0.1521 | 0.051* | |
C17A | −0.0310 (2) | 0.47467 (14) | 0.11472 (11) | 0.0368 (4) | |
C18A | 0.0779 (3) | 0.31726 (16) | 0.02885 (12) | 0.0418 (5) | |
C19A | 0.1020 (3) | 0.87447 (15) | 0.23345 (14) | 0.0645 (7) | |
H19A | 0.0863 | 0.9452 | 0.2695 | 0.097* | |
H19B | 0.0729 | 0.8607 | 0.1705 | 0.097* | |
H19C | 0.2251 | 0.8690 | 0.2502 | 0.097* | |
C1B | 0.5733 (2) | 0.73632 (15) | 0.52152 (13) | 0.0397 (5) | |
C2B | 0.4670 (3) | 0.70613 (15) | 0.43583 (13) | 0.0477 (5) | |
H2B | 0.4705 | 0.6422 | 0.3884 | 0.057* | |
C3B | 0.3567 (3) | 0.77144 (16) | 0.42168 (13) | 0.0474 (5) | |
H3B | 0.2833 | 0.7505 | 0.3645 | 0.057* | |
C4B | 0.3520 (2) | 0.86928 (15) | 0.49170 (12) | 0.0380 (5) | |
C5B | 0.2409 (2) | 0.94177 (16) | 0.48333 (14) | 0.0466 (5) | |
H5B | 0.1605 | 0.9236 | 0.4285 | 0.056* | |
C6B | 0.2502 (3) | 1.03592 (16) | 0.55316 (14) | 0.0477 (5) | |
H6B | 0.1773 | 1.0822 | 0.5457 | 0.057* | |
C7B | 0.3707 (3) | 1.06612 (16) | 0.63905 (14) | 0.0439 (5) | |
C8B | 0.4660 (2) | 0.89720 (14) | 0.57563 (12) | 0.0353 (4) | |
C9B | 0.5745 (2) | 0.83201 (14) | 0.59251 (12) | 0.0381 (5) | |
H9B | 0.6464 | 0.8517 | 0.6498 | 0.046* | |
C10B | 0.7610 (2) | 0.60870 (14) | 0.47727 (12) | 0.0387 (5) | |
C11B | 0.7399 (2) | 0.50301 (14) | 0.44958 (12) | 0.0400 (5) | |
H11B | 0.6547 | 0.4673 | 0.4678 | 0.048* | |
C12B | 0.8476 (2) | 0.44413 (14) | 0.39195 (11) | 0.0366 (4) | |
C13B | 0.8397 (2) | 0.33368 (14) | 0.36197 (12) | 0.0397 (5) | |
H13B | 0.7579 | 0.2938 | 0.3786 | 0.048* | |
C14B | 0.9511 (3) | 0.28363 (14) | 0.30831 (12) | 0.0389 (5) | |
C15B | 1.0766 (3) | 0.34384 (15) | 0.28321 (12) | 0.0399 (5) | |
C16B | 1.0861 (3) | 0.45151 (15) | 0.31245 (12) | 0.0421 (5) | |
H16B | 1.1686 | 0.4916 | 0.2964 | 0.051* | |
C17B | 0.9727 (2) | 0.50083 (14) | 0.36602 (11) | 0.0373 (5) | |
C18B | 0.8914 (3) | 0.66903 (15) | 0.45085 (13) | 0.0425 (5) | |
C19B | 0.8331 (3) | 0.11117 (15) | 0.29726 (13) | 0.0601 (6) | |
H19D | 0.8481 | 0.0384 | 0.2697 | 0.090* | |
H19E | 0.7111 | 0.1152 | 0.2760 | 0.090* | |
H19F | 0.8585 | 0.1356 | 0.3619 | 0.090* | |
O1A | 0.35292 (18) | 0.34319 (10) | −0.01971 (8) | 0.0502 (4) | |
O1B | 0.67541 (18) | 0.66934 (10) | 0.54187 (8) | 0.0477 (4) | |
O2A | 0.63689 (18) | 0.05040 (10) | −0.12140 (8) | 0.0480 (4) | |
O3A | 0.7580 (2) | −0.08925 (12) | −0.18021 (10) | 0.0708 (5) | |
O4A | 0.04948 (18) | 0.22080 (10) | −0.00833 (9) | 0.0538 (4) | |
O5A | −0.04808 (17) | 0.36499 (9) | 0.07215 (8) | 0.0451 (3) | |
O6A | −0.29514 (19) | 0.65470 (12) | 0.23758 (10) | 0.0580 (4) | |
O7A | −0.01414 (18) | 0.79814 (10) | 0.24851 (9) | 0.0555 (4) | |
O2B | 0.47407 (16) | 0.99413 (9) | 0.64707 (8) | 0.0431 (3) | |
O3B | 0.39180 (19) | 1.14857 (11) | 0.70653 (10) | 0.0604 (4) | |
O4B | 0.92093 (18) | 0.76494 (10) | 0.47495 (9) | 0.0573 (4) | |
O5B | 0.98931 (17) | 0.61015 (9) | 0.39376 (8) | 0.0462 (3) | |
O6B | 1.1873 (2) | 0.29731 (13) | 0.23072 (10) | 0.0575 (4) | |
O7B | 0.95408 (18) | 0.17695 (10) | 0.27386 (9) | 0.0520 (4) | |
H6OB | 1.173 (3) | 0.2285 (17) | 0.2160 (14) | 0.076 (8)* | |
H6OA | −0.288 (3) | 0.7247 (17) | 0.2602 (14) | 0.078 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1A | 0.0400 (11) | 0.0369 (11) | 0.0457 (12) | 0.0147 (9) | 0.0174 (9) | 0.0188 (10) |
C2A | 0.0431 (12) | 0.0373 (11) | 0.0383 (11) | 0.0086 (9) | 0.0153 (9) | 0.0077 (9) |
C3A | 0.0404 (12) | 0.0479 (13) | 0.0366 (11) | 0.0083 (10) | 0.0076 (9) | 0.0150 (10) |
C4A | 0.0333 (11) | 0.0369 (11) | 0.0416 (11) | 0.0063 (9) | 0.0113 (9) | 0.0149 (9) |
C5A | 0.0367 (12) | 0.0515 (13) | 0.0494 (13) | 0.0093 (10) | 0.0063 (9) | 0.0243 (11) |
C6A | 0.0381 (12) | 0.0424 (12) | 0.0665 (14) | 0.0146 (9) | 0.0167 (10) | 0.0285 (11) |
C7A | 0.0496 (13) | 0.0404 (12) | 0.0642 (15) | 0.0206 (10) | 0.0292 (11) | 0.0250 (11) |
C8A | 0.0396 (11) | 0.0331 (11) | 0.0393 (11) | 0.0131 (9) | 0.0198 (9) | 0.0128 (9) |
C9A | 0.0495 (13) | 0.0436 (12) | 0.0410 (12) | 0.0200 (10) | 0.0221 (9) | 0.0206 (10) |
C10A | 0.0465 (12) | 0.0407 (12) | 0.0414 (11) | 0.0212 (9) | 0.0191 (9) | 0.0185 (10) |
C11A | 0.0424 (12) | 0.0402 (12) | 0.0454 (12) | 0.0122 (9) | 0.0155 (9) | 0.0180 (10) |
C12A | 0.0393 (11) | 0.0343 (11) | 0.0369 (11) | 0.0103 (9) | 0.0105 (8) | 0.0145 (9) |
C13A | 0.0428 (12) | 0.0315 (11) | 0.0460 (12) | 0.0047 (9) | 0.0141 (9) | 0.0123 (9) |
C14A | 0.0485 (12) | 0.0277 (10) | 0.0378 (11) | 0.0107 (9) | 0.0118 (9) | 0.0090 (9) |
C15A | 0.0418 (12) | 0.0388 (12) | 0.0426 (12) | 0.0153 (9) | 0.0162 (9) | 0.0156 (10) |
C16A | 0.0409 (12) | 0.0349 (11) | 0.0527 (12) | 0.0077 (9) | 0.0168 (9) | 0.0167 (10) |
C17A | 0.0441 (12) | 0.0278 (10) | 0.0377 (11) | 0.0105 (9) | 0.0091 (9) | 0.0119 (9) |
C18A | 0.0485 (13) | 0.0374 (12) | 0.0404 (12) | 0.0177 (10) | 0.0113 (9) | 0.0144 (10) |
C19A | 0.0850 (18) | 0.0335 (12) | 0.0700 (15) | 0.0047 (11) | 0.0184 (13) | 0.0183 (11) |
C1B | 0.0388 (11) | 0.0383 (11) | 0.0457 (12) | 0.0135 (9) | 0.0167 (9) | 0.0171 (10) |
C2B | 0.0468 (13) | 0.0394 (12) | 0.0457 (13) | 0.0118 (10) | 0.0113 (10) | 0.0053 (10) |
C3B | 0.0434 (12) | 0.0499 (13) | 0.0409 (12) | 0.0094 (10) | 0.0063 (9) | 0.0123 (10) |
C4B | 0.0312 (11) | 0.0422 (12) | 0.0444 (12) | 0.0096 (9) | 0.0132 (9) | 0.0198 (10) |
C5B | 0.0392 (12) | 0.0548 (14) | 0.0523 (13) | 0.0113 (10) | 0.0117 (10) | 0.0283 (11) |
C6B | 0.0423 (12) | 0.0485 (13) | 0.0667 (15) | 0.0208 (10) | 0.0196 (11) | 0.0330 (12) |
C7B | 0.0484 (13) | 0.0374 (12) | 0.0576 (14) | 0.0193 (10) | 0.0268 (11) | 0.0234 (11) |
C8B | 0.0383 (11) | 0.0303 (10) | 0.0388 (11) | 0.0103 (8) | 0.0164 (9) | 0.0121 (9) |
C9B | 0.0403 (11) | 0.0381 (11) | 0.0367 (11) | 0.0143 (9) | 0.0111 (9) | 0.0139 (9) |
C10B | 0.0424 (12) | 0.0359 (11) | 0.0398 (11) | 0.0168 (9) | 0.0149 (9) | 0.0135 (9) |
C11B | 0.0421 (12) | 0.0364 (11) | 0.0462 (12) | 0.0123 (9) | 0.0184 (9) | 0.0178 (9) |
C12B | 0.0401 (11) | 0.0346 (11) | 0.0355 (11) | 0.0125 (9) | 0.0129 (9) | 0.0121 (9) |
C13B | 0.0457 (12) | 0.0331 (11) | 0.0426 (11) | 0.0100 (9) | 0.0181 (9) | 0.0147 (9) |
C14B | 0.0498 (12) | 0.0308 (10) | 0.0367 (11) | 0.0127 (9) | 0.0135 (9) | 0.0119 (9) |
C15B | 0.0457 (12) | 0.0422 (12) | 0.0366 (11) | 0.0166 (9) | 0.0192 (9) | 0.0155 (9) |
C16B | 0.0474 (12) | 0.0404 (12) | 0.0463 (12) | 0.0117 (9) | 0.0219 (9) | 0.0211 (10) |
C17B | 0.0433 (12) | 0.0308 (11) | 0.0400 (11) | 0.0116 (9) | 0.0119 (9) | 0.0153 (9) |
C18B | 0.0441 (12) | 0.0358 (12) | 0.0491 (12) | 0.0150 (9) | 0.0113 (10) | 0.0174 (10) |
C19B | 0.0914 (18) | 0.0354 (12) | 0.0614 (14) | 0.0152 (11) | 0.0331 (13) | 0.0216 (11) |
O1A | 0.0660 (10) | 0.0501 (9) | 0.0538 (9) | 0.0333 (7) | 0.0335 (7) | 0.0282 (7) |
O1B | 0.0613 (9) | 0.0429 (8) | 0.0482 (8) | 0.0294 (7) | 0.0238 (7) | 0.0192 (7) |
O2A | 0.0629 (9) | 0.0454 (8) | 0.0472 (8) | 0.0286 (7) | 0.0284 (7) | 0.0203 (7) |
O3A | 0.1042 (13) | 0.0601 (10) | 0.0692 (11) | 0.0515 (9) | 0.0498 (10) | 0.0277 (9) |
O4A | 0.0625 (10) | 0.0322 (8) | 0.0603 (9) | 0.0172 (7) | 0.0142 (7) | 0.0107 (7) |
O5A | 0.0480 (8) | 0.0291 (7) | 0.0572 (9) | 0.0118 (6) | 0.0200 (7) | 0.0128 (7) |
O6A | 0.0576 (10) | 0.0388 (9) | 0.0806 (11) | 0.0196 (7) | 0.0374 (8) | 0.0170 (9) |
O7A | 0.0640 (10) | 0.0294 (8) | 0.0684 (10) | 0.0110 (7) | 0.0284 (8) | 0.0104 (7) |
O2B | 0.0502 (8) | 0.0351 (8) | 0.0452 (8) | 0.0186 (6) | 0.0150 (6) | 0.0136 (6) |
O3B | 0.0805 (11) | 0.0434 (9) | 0.0607 (10) | 0.0322 (8) | 0.0276 (8) | 0.0154 (8) |
O4B | 0.0606 (10) | 0.0321 (8) | 0.0806 (11) | 0.0145 (7) | 0.0231 (8) | 0.0208 (8) |
O5B | 0.0530 (9) | 0.0332 (7) | 0.0609 (9) | 0.0155 (6) | 0.0262 (7) | 0.0216 (7) |
O6B | 0.0720 (11) | 0.0480 (10) | 0.0654 (10) | 0.0272 (8) | 0.0446 (8) | 0.0220 (8) |
O7B | 0.0690 (10) | 0.0330 (8) | 0.0588 (9) | 0.0171 (7) | 0.0339 (7) | 0.0148 (7) |
C1A—C9A | 1.376 (2) | C1B—C2B | 1.386 (2) |
C1A—O1A | 1.385 (2) | C1B—O1B | 1.386 (2) |
C1A—C2A | 1.388 (2) | C2B—C3B | 1.369 (3) |
C2A—C3A | 1.375 (3) | C2B—H2B | 0.9300 |
C2A—H2A | 0.9300 | C3B—C4B | 1.402 (2) |
C3A—C4A | 1.397 (2) | C3B—H3B | 0.9300 |
C3A—H3A | 0.9300 | C4B—C8B | 1.392 (2) |
C4A—C8A | 1.393 (2) | C4B—C5B | 1.424 (3) |
C4A—C5A | 1.426 (3) | C5B—C6B | 1.343 (2) |
C5A—C6A | 1.340 (2) | C5B—H5B | 0.9300 |
C5A—H5A | 0.9300 | C6B—C7B | 1.434 (3) |
C6A—C7A | 1.433 (3) | C6B—H6B | 0.9300 |
C6A—H6A | 0.9300 | C7B—O3B | 1.212 (2) |
C7A—O3A | 1.208 (2) | C7B—O2B | 1.378 (2) |
C7A—O2A | 1.372 (2) | C8B—C9B | 1.374 (2) |
C8A—C9A | 1.375 (2) | C8B—O2B | 1.3817 (19) |
C8A—O2A | 1.3808 (19) | C9B—H9B | 0.9300 |
C9A—H9A | 0.9300 | C10B—C11B | 1.333 (2) |
C10A—C11A | 1.333 (2) | C10B—O1B | 1.385 (2) |
C10A—O1A | 1.383 (2) | C10B—C18B | 1.454 (3) |
C10A—C18A | 1.458 (3) | C11B—C12B | 1.431 (2) |
C11A—C12A | 1.433 (2) | C11B—H11B | 0.9300 |
C11A—H11A | 0.9300 | C12B—C17B | 1.391 (2) |
C12A—C17A | 1.391 (2) | C12B—C13B | 1.403 (2) |
C12A—C13A | 1.404 (2) | C13B—C14B | 1.375 (2) |
C13A—C14A | 1.372 (2) | C13B—H13B | 0.9300 |
C13A—H13A | 0.9300 | C14B—O7B | 1.365 (2) |
C14A—O7A | 1.369 (2) | C14B—C15B | 1.414 (2) |
C14A—C15A | 1.411 (2) | C15B—O6B | 1.345 (2) |
C15A—O6A | 1.351 (2) | C15B—C16B | 1.366 (2) |
C15A—C16A | 1.366 (2) | C16B—C17B | 1.382 (2) |
C16A—C17A | 1.375 (2) | C16B—H16B | 0.9300 |
C16A—H16A | 0.9300 | C17B—O5B | 1.384 (2) |
C17A—O5A | 1.381 (2) | C18B—O4B | 1.210 (2) |
C18A—O4A | 1.207 (2) | C18B—O5B | 1.371 (2) |
C18A—O5A | 1.370 (2) | C19B—O7B | 1.425 (2) |
C19A—O7A | 1.424 (2) | C19B—H19D | 0.9600 |
C19A—H19A | 0.9600 | C19B—H19E | 0.9600 |
C19A—H19B | 0.9600 | C19B—H19F | 0.9600 |
C19A—H19C | 0.9600 | O6A—H6OA | 0.88 (2) |
C1B—C9B | 1.379 (2) | O6B—H6OB | 0.87 (2) |
C9A—C1A—O1A | 115.92 (17) | C1B—C2B—H2B | 120.4 |
C9A—C1A—C2A | 121.26 (19) | C2B—C3B—C4B | 121.30 (19) |
O1A—C1A—C2A | 122.73 (17) | C2B—C3B—H3B | 119.3 |
C3A—C2A—C1A | 119.31 (18) | C4B—C3B—H3B | 119.3 |
C3A—C2A—H2A | 120.3 | C8B—C4B—C3B | 116.94 (18) |
C1A—C2A—H2A | 120.3 | C8B—C4B—C5B | 117.92 (18) |
C2A—C3A—C4A | 121.35 (18) | C3B—C4B—C5B | 125.14 (18) |
C2A—C3A—H3A | 119.3 | C6B—C5B—C4B | 121.19 (19) |
C4A—C3A—H3A | 119.3 | C6B—C5B—H5B | 119.4 |
C8A—C4A—C3A | 116.95 (19) | C4B—C5B—H5B | 119.4 |
C8A—C4A—C5A | 117.55 (17) | C5B—C6B—C7B | 121.0 (2) |
C3A—C4A—C5A | 125.40 (19) | C5B—C6B—H6B | 119.5 |
C6A—C5A—C4A | 121.42 (19) | C7B—C6B—H6B | 119.5 |
C6A—C5A—H5A | 119.3 | O3B—C7B—O2B | 115.58 (19) |
C4A—C5A—H5A | 119.3 | O3B—C7B—C6B | 127.1 (2) |
C5A—C6A—C7A | 120.8 (2) | O2B—C7B—C6B | 117.28 (18) |
C5A—C6A—H6A | 119.6 | C9B—C8B—O2B | 116.59 (17) |
C7A—C6A—H6A | 119.6 | C9B—C8B—C4B | 123.04 (18) |
O3A—C7A—O2A | 115.9 (2) | O2B—C8B—C4B | 120.37 (17) |
O3A—C7A—C6A | 126.5 (2) | C8B—C9B—C1B | 117.71 (18) |
O2A—C7A—C6A | 117.59 (18) | C8B—C9B—H9B | 121.1 |
C9A—C8A—O2A | 116.48 (17) | C1B—C9B—H9B | 121.1 |
C9A—C8A—C4A | 122.96 (17) | C11B—C10B—O1B | 121.54 (17) |
O2A—C8A—C4A | 120.55 (17) | C11B—C10B—C18B | 122.41 (17) |
C8A—C9A—C1A | 118.11 (18) | O1B—C10B—C18B | 115.59 (16) |
C8A—C9A—H9A | 120.9 | C10B—C11B—C12B | 120.43 (17) |
C1A—C9A—H9A | 120.9 | C10B—C11B—H11B | 119.8 |
C11A—C10A—O1A | 121.24 (17) | C12B—C11B—H11B | 119.8 |
C11A—C10A—C18A | 122.59 (18) | C17B—C12B—C13B | 117.68 (16) |
O1A—C10A—C18A | 115.76 (16) | C17B—C12B—C11B | 117.75 (17) |
C10A—C11A—C12A | 120.39 (18) | C13B—C12B—C11B | 124.54 (17) |
C10A—C11A—H11A | 119.8 | C14B—C13B—C12B | 120.84 (17) |
C12A—C11A—H11A | 119.8 | C14B—C13B—H13B | 119.6 |
C17A—C12A—C13A | 117.57 (17) | C12B—C13B—H13B | 119.6 |
C17A—C12A—C11A | 117.58 (17) | O7B—C14B—C13B | 126.28 (17) |
C13A—C12A—C11A | 124.84 (17) | O7B—C14B—C15B | 113.80 (16) |
C14A—C13A—C12A | 121.22 (17) | C13B—C14B—C15B | 119.92 (17) |
C14A—C13A—H13A | 119.4 | O6B—C15B—C16B | 118.91 (17) |
C12A—C13A—H13A | 119.4 | O6B—C15B—C14B | 121.39 (17) |
O7A—C14A—C13A | 126.10 (17) | C16B—C15B—C14B | 119.70 (17) |
O7A—C14A—C15A | 114.46 (16) | C15B—C16B—C17B | 119.85 (17) |
C13A—C14A—C15A | 119.43 (17) | C15B—C16B—H16B | 120.1 |
O6A—C15A—C16A | 118.67 (17) | C17B—C16B—H16B | 120.1 |
O6A—C15A—C14A | 121.44 (17) | C16B—C17B—O5B | 117.11 (16) |
C16A—C15A—C14A | 119.89 (17) | C16B—C17B—C12B | 122.01 (17) |
C15A—C16A—C17A | 120.14 (17) | O5B—C17B—C12B | 120.87 (16) |
C15A—C16A—H16A | 119.9 | O4B—C18B—O5B | 118.08 (18) |
C17A—C16A—H16A | 119.9 | O4B—C18B—C10B | 126.08 (19) |
C16A—C17A—O5A | 117.22 (16) | O5B—C18B—C10B | 115.84 (16) |
C16A—C17A—C12A | 121.76 (17) | O7B—C19B—H19D | 109.5 |
O5A—C17A—C12A | 121.02 (16) | O7B—C19B—H19E | 109.5 |
O4A—C18A—O5A | 118.28 (17) | H19D—C19B—H19E | 109.5 |
O4A—C18A—C10A | 126.23 (18) | O7B—C19B—H19F | 109.5 |
O5A—C18A—C10A | 115.49 (16) | H19D—C19B—H19F | 109.5 |
O7A—C19A—H19A | 109.5 | H19E—C19B—H19F | 109.5 |
O7A—C19A—H19B | 109.5 | C10A—O1A—C1A | 118.73 (14) |
H19A—C19A—H19B | 109.5 | C10B—O1B—C1B | 118.17 (14) |
O7A—C19A—H19C | 109.5 | C7A—O2A—C8A | 122.09 (16) |
H19A—C19A—H19C | 109.5 | C18A—O5A—C17A | 122.91 (14) |
H19B—C19A—H19C | 109.5 | C15A—O6A—H6OA | 114.8 (14) |
C9B—C1B—C2B | 121.64 (19) | C14A—O7A—C19A | 117.09 (15) |
C9B—C1B—O1B | 116.38 (17) | C7B—O2B—C8B | 122.18 (15) |
C2B—C1B—O1B | 121.86 (17) | C18B—O5B—C17B | 122.62 (15) |
C3B—C2B—C1B | 119.29 (19) | C15B—O6B—H6OB | 112.7 (15) |
C3B—C2B—H2B | 120.4 | C14B—O7B—C19B | 117.10 (14) |
C9A—C1A—C2A—C3A | 1.8 (3) | O2B—C8B—C9B—C1B | −177.95 (14) |
O1A—C1A—C2A—C3A | −174.76 (16) | C4B—C8B—C9B—C1B | 2.2 (3) |
C1A—C2A—C3A—C4A | −1.4 (3) | C2B—C1B—C9B—C8B | 0.0 (3) |
C2A—C3A—C4A—C8A | −0.6 (3) | O1B—C1B—C9B—C8B | −176.13 (15) |
C2A—C3A—C4A—C5A | −176.83 (16) | O1B—C10B—C11B—C12B | −171.73 (17) |
C8A—C4A—C5A—C6A | −1.3 (3) | C18B—C10B—C11B—C12B | 0.2 (3) |
C3A—C4A—C5A—C6A | 174.96 (16) | C10B—C11B—C12B—C17B | −0.3 (3) |
C4A—C5A—C6A—C7A | 1.8 (3) | C10B—C11B—C12B—C13B | 177.68 (17) |
C5A—C6A—C7A—O3A | 179.22 (19) | C17B—C12B—C13B—C14B | −0.5 (3) |
C5A—C6A—C7A—O2A | −0.8 (3) | C11B—C12B—C13B—C14B | −178.45 (18) |
C3A—C4A—C8A—C9A | 2.3 (3) | C12B—C13B—C14B—O7B | −178.89 (16) |
C5A—C4A—C8A—C9A | 178.90 (17) | C12B—C13B—C14B—C15B | 0.4 (3) |
C3A—C4A—C8A—O2A | −176.66 (15) | O7B—C14B—C15B—O6B | −0.5 (3) |
C5A—C4A—C8A—O2A | −0.1 (2) | C13B—C14B—C15B—O6B | −179.91 (18) |
O2A—C8A—C9A—C1A | 177.04 (15) | O7B—C14B—C15B—C16B | 179.33 (17) |
C4A—C8A—C9A—C1A | −2.0 (3) | C13B—C14B—C15B—C16B | 0.0 (3) |
O1A—C1A—C9A—C8A | 176.66 (15) | O6B—C15B—C16B—C17B | 179.61 (18) |
C2A—C1A—C9A—C8A | −0.1 (3) | C14B—C15B—C16B—C17B | −0.3 (3) |
O1A—C10A—C11A—C12A | 172.67 (16) | C15B—C16B—C17B—O5B | 179.77 (16) |
C18A—C10A—C11A—C12A | 0.4 (3) | C15B—C16B—C17B—C12B | 0.2 (3) |
C10A—C11A—C12A—C17A | −0.4 (3) | C13B—C12B—C17B—C16B | 0.2 (3) |
C10A—C11A—C12A—C13A | −179.26 (17) | C11B—C12B—C17B—C16B | 178.29 (18) |
C17A—C12A—C13A—C14A | 0.9 (3) | C13B—C12B—C17B—O5B | −179.40 (16) |
C11A—C12A—C13A—C14A | 179.72 (18) | C11B—C12B—C17B—O5B | −1.3 (3) |
C12A—C13A—C14A—O7A | 178.25 (17) | C11B—C10B—C18B—O4B | −178.1 (2) |
C12A—C13A—C14A—C15A | −0.5 (3) | O1B—C10B—C18B—O4B | −5.7 (3) |
O7A—C14A—C15A—O6A | 0.6 (3) | C11B—C10B—C18B—O5B | 1.4 (3) |
C13A—C14A—C15A—O6A | 179.55 (18) | O1B—C10B—C18B—O5B | 173.82 (15) |
O7A—C14A—C15A—C16A | −178.95 (17) | C11A—C10A—O1A—C1A | 123.6 (2) |
C13A—C14A—C15A—C16A | 0.0 (3) | C18A—C10A—O1A—C1A | −63.6 (2) |
O6A—C15A—C16A—C17A | −179.33 (18) | C9A—C1A—O1A—C10A | 153.95 (16) |
C14A—C15A—C16A—C17A | 0.3 (3) | C2A—C1A—O1A—C10A | −29.3 (3) |
C15A—C16A—C17A—O5A | 179.74 (16) | C11B—C10B—O1B—C1B | −127.07 (19) |
C15A—C16A—C17A—C12A | 0.1 (3) | C18B—C10B—O1B—C1B | 60.5 (2) |
C13A—C12A—C17A—C16A | −0.6 (3) | C9B—C1B—O1B—C10B | −144.91 (16) |
C11A—C12A—C17A—C16A | −179.57 (18) | C2B—C1B—O1B—C10B | 38.9 (2) |
C13A—C12A—C17A—O5A | 179.73 (16) | O3A—C7A—O2A—C8A | 179.40 (16) |
C11A—C12A—C17A—O5A | 0.8 (3) | C6A—C7A—O2A—C8A | −0.5 (3) |
C11A—C10A—C18A—O4A | 178.6 (2) | C9A—C8A—O2A—C7A | −178.06 (16) |
O1A—C10A—C18A—O4A | 5.9 (3) | C4A—C8A—O2A—C7A | 1.0 (2) |
C11A—C10A—C18A—O5A | −0.7 (3) | O4A—C18A—O5A—C17A | −178.28 (15) |
O1A—C10A—C18A—O5A | −173.38 (16) | C10A—C18A—O5A—C17A | 1.1 (3) |
C9B—C1B—C2B—C3B | −1.8 (3) | C16A—C17A—O5A—C18A | 179.15 (17) |
O1B—C1B—C2B—C3B | 174.19 (17) | C12A—C17A—O5A—C18A | −1.2 (3) |
C1B—C2B—C3B—C4B | 1.4 (3) | C13A—C14A—O7A—C19A | 18.7 (3) |
C2B—C3B—C4B—C8B | 0.7 (3) | C15A—C14A—O7A—C19A | −162.49 (17) |
C2B—C3B—C4B—C5B | −179.57 (18) | O3B—C7B—O2B—C8B | −179.33 (14) |
C8B—C4B—C5B—C6B | 2.3 (3) | C6B—C7B—O2B—C8B | 1.0 (2) |
C3B—C4B—C5B—C6B | −177.40 (17) | C9B—C8B—O2B—C7B | −179.39 (16) |
C4B—C5B—C6B—C7B | −0.8 (3) | C4B—C8B—O2B—C7B | 0.5 (2) |
C5B—C6B—C7B—O3B | 179.56 (19) | O4B—C18B—O5B—C17B | 176.54 (16) |
C5B—C6B—C7B—O2B | −0.9 (3) | C10B—C18B—O5B—C17B | −3.1 (3) |
C3B—C4B—C8B—C9B | −2.5 (3) | C16B—C17B—O5B—C18B | −176.48 (17) |
C5B—C4B—C8B—C9B | 177.71 (16) | C12B—C17B—O5B—C18B | 3.1 (3) |
C3B—C4B—C8B—O2B | 177.60 (15) | C13B—C14B—O7B—C19B | −1.5 (3) |
C5B—C4B—C8B—O2B | −2.2 (2) | C15B—C14B—O7B—C19B | 179.13 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
O6A—H6OA···O3Bi | 0.88 (2) | 1.93 (2) | 2.750 (2) | 153 (2) |
O6B—H6OB···O3Aii | 0.87 (2) | 1.95 (2) | 2.776 (2) | 157 (2) |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) −x+2, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C19H12O7 |
Mr | 352.29 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 7.659 (3), 13.872 (5), 16.479 (5) |
α, β, γ (°) | 113.175 (5), 99.171 (6), 96.799 (5) |
V (Å3) | 1557.0 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.31 × 0.16 × 0.11 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.966, 0.985 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8458, 5966, 3894 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.618 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.093, 0.95 |
No. of reflections | 5966 |
No. of parameters | 477 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.17, −0.17 |
Computer programs: PROCESS-AUTO (Rigaku Corporation, 1998), PROCESS-AUTO, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL-Plus (Sheldrick, 1990), program(s) (references)?.
C18A—C10A—O1A—C1A | −63.6 (2) | C2B—C1B—O1B—C10B | 38.9 (2) |
C2A—C1A—O1A—C10A | −29.3 (3) | C13A—C14A—O7A—C19A | 18.7 (3) |
C18B—C10B—O1B—C1B | 60.5 (2) | C13B—C14B—O7B—C19B | −1.5 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O6A—H6OA···O3Bi | 0.88 (2) | 1.93 (2) | 2.750 (2) | 153 (2) |
O6B—H6OB···O3Aii | 0.87 (2) | 1.95 (2) | 2.776 (2) | 157 (2) |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) −x+2, −y, −z. |
Stellera chamaejasme, which is widespread in the northern area of China, has been used traditionally as a herbal remedy for scabies and tinea in China. It has been found to possess obvious antitumor and antiviral, especially anti-HIV, activities (Ikekawa & Ikekawa, 1996; Endo et al., 1998). S. chamaejasme is abundant in daphnoretin, which has been demonstrated to inhibit Ehrlich carcinoma growth significantly (Hall et al., 1982; Liou et al., 1982) and has anti-P-388 lymphocytic leukemia activity in vitro (Handa et al., 1983). It is also a protein kinase C (PKC) activator, which shows strong suppressive effects on the expression of the hepatitis B surface antigen (HBsAg) in human hepatoma Hep3B cells (Chen et al., 1996) and induces rabbit platelet aggregation through protein kinase C activation (Ko et al., 1993). Antimicrobial effects are the other important characteristics of daphnoretin. It has antibacterial activity (Cottiglia et al., 2001), and antifungal, antimitotic and anti-HIV-1 activities to some extent (Hu et al., 2000). In our investigation of the chemical constituents of the leaves of S. chamaejasme, daphnoretin was isolated by chromatographic technology and identified by X-ray diffraction. To the best of our knowledge, the crystal structure of daphnoretin has not been reported previously.
Single-crystal X-ray diffraction reveals that two independent molecules of (I), A and B, are present in the asymmetric unit, with similar conformations (Fig. 1). Each of the independent molecules is composed of two chromene systems, which are connected by an ether band. No significant difference is observed for all bond distances and angles between A and B but they are distinguished by some bond rotations (Table 1). Rotations about the O1n—C1n and C1n—C10n bonds (n = A and B) mainly contribute to the different orientations of the chromene systems in the independent molecules. The atoms in each chromene system are nearly coplanar. The dihedral angles between chromene planes of the rings are 81.9 (3) and 86.9 (2)° for A and B. The conformations are also different at the terminal methoxy groups; the C19n—O7n—C14n—C13n torsion angles are 18.7 (3) and −1.5 (3)° for A and B, respectively.
The bond distances and bond angles are in agreement with those of some analogous structures (Borowiak & Wolska, 1989; Rajnikant et al., 1993; Gupta et al., 1993; Singh et al., 1995)·The double bonds (C7n═O3n and C18n═O4n) and the multiple-character bands (C5n═C6n and C10n═ C11n) (n = A and B), which are generally responsible for the photoactivity of coumarins (Song & Gordon, 1970), are confirmed by their respective distances [1.208 (2) and 1.212 (2) Å, 1.207 (2) and 1.210 (2) Å, 1.340 (2) and 1.343 (2) Å, and 1.333 (2) and 1.333 (2) Å]. The C8n—O2n, C7n—O2n, C17n—O5n and C18n—O5n bonds [1.3808 (19) and 1.3817 (19) Å, 1.372 (2) and 1.378 (2) Å, 1.381 (2) and 1.384 (2) Å, and 1.370 (2) and 1.371 (2) Å] exhibit variation in their distances, a feature quite common in furano compounds and simple coumarins [e.g. 1.389 and 1.366 Å in sphondin (Rajnikant et al., 1993), and 1.390 and 1.368 Å in angenomalin (Gupta et al., 1993)]. These differences may be due to ring strain and electron delocalization. The C—C–O and C—C—C angles at the junctions of the pyrone and phenyl rings, viz. C9n—C8n—O2n [116.48 (17) and 116.59 (17)°], C3n—C4n—C5n [125.40 (19) and 125.14 (18)°], C16n—C17n—O5n [117.22 (16) and 117.11 (16)°] and C11n—C12 n—C13n [124.84 (17) and 124.54 (17)°], are slightly smaller than and greater than 120°, respectively. This phenomenon has also been observed in some other coumarin derivatives (Rajnikant et al., 1993; Stemple & Watson, 1972; Ueno, 1985). The widening of the C6n—C7n—O3n [126.5 (2) and 127.1 (2)°] and C10n—C18n—O4n [126.23 (18) and 126.08 (19)°] angles is another feature commonly observed in 5-pyrone systems, and the large value of this angle is attributed to the lone-pair interactions between atoms O3n and O4n (Chinnakali et al., 1999a,b; Singh et al., 1997).
In the packing of (I) (Fig. 2), each molecule forms a one-dimensional chain via O—H···O hydrogen-bonding interactions between the O atom of the hydroxy group of a phenyl ring and the ketone group of a pyrone ring (Table 2). Adjacent one-dimensional chains are parallel to each other.