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All simple structures with saturated hydrogen bonding (SHB) are classified into eight categories on the basis of the donor and acceptor numbers on the atoms at each end of the hydrogen bonds. Examples from the literature are included where known, along with seven structures investigated as part of this study (five have SHB). Graph-set descriptions of the hydrogen-bond patterns are given for each of these structures and for some selected literature examples. The structures presented are: piperazine (I), morpholinium chloride (II) and iodide (III) [(II) and (III) are not SHB], three 1:1 cocrystals of diols with 1,4-phenylenediamine (PDA) - PDA·1,8-octane diol (IV), PDA·1,10-decane diol (V), and PDA·1,12-dodecane diol (VI) and 6-amino-1-hexanol (VII). This study discusses some structures that show limitations of the graph-set model, along with possible suggestions to cover these limitations. The cocrystalline PDA·aliphatic diol structures may provide details applicable to the structure of self-assembled monolayers of aliphatic thiol molecules on Au(111) surfaces.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108768106045046/gp5014sup1.cif
Contains datablocks CRYSTALS, PZ, MORPHI, PDA8DO, PDA10D, PDA12D, AMHXOL, MORFCL

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768106045046/gp5014PZsup2.hkl
Contains datablock PZ

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768106045046/gp5014MORFCLsup3.hkl
Contains datablock MORFCL

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768106045046/gp5014MORPHIsup4.hkl
Contains datablock MORPHI

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768106045046/gp5014PDA8DOsup5.hkl
Contains datablock PDA8DO

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768106045046/gp5014PDA10Dsup6.hkl
Contains datablock PDA10D

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768106045046/gp5014PDA12Dsup7.hkl
Contains datablock PDA12D

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768106045046/gp5014AMHXOLsup8.hkl
Contains datablock AMHXOL

CCDC references: 637753; 637754; 637755; 637756; 637757; 637758; 637759

Experimental top

One equivalent of dilute HCl was added to morpholine

Refinement top

H atoms placed geometrically after each cycle

Computing details top

Data collection: EXPRESS for PZ; Bruker SMART CCD for MORFCL, PDA8DO, PDA10D, PDA12D; EXPRESS (Enraf-Nonius, 1993) for MORPHI; Siemens XSCANS for AMHXOL. Cell refinement: EXPRESS for PZ; SAINT for MORFCL, PDA8DO, PDA10D, PDA12D; EXPRESS (Enraf-Nonius, 1993) for MORPHI; XSCANS for AMHXOL. Data reduction: Xtal3.7 for PZ; SAINT for MORFCL, PDA8DO, PDA10D, PDA12D; EXPRESS (Enraf-Nonius, 1993) for MORPHI; Siemens SHELXTL for AMHXOL. Program(s) used to solve structure: model ring fit on i, H-bond chain along 21 axis for PZ; SIR92 (Altomare et al., 1994) for MORFCL, MORPHI, PDA8DO, PDA10D, PDA12D; SHELXS 86 (Sheldrick, 1986) for AMHXOL. Program(s) used to refine structure: Xtal CRYLSQ for PZ; CRYSTALS (Watkin et al. 2001) for MORFCL, MORPHI, PDA8DO, PDA10D, PDA12D, AMHXOL. Molecular graphics: Xtal ORTEP for PZ; CAMERON (Watkin et al. 1996) for MORFCL, MORPHI, PDA8DO, PDA10D, PDA12D, AMHXOL. Software used to prepare material for publication: Xtal BONDLA CIFIO for PZ; CRYSTALS (Watkin et al. 2001) for MORFCL, MORPHI, PDA8DO, PDA10D, PDA12D, AMHXOL.

Figures top
[Figure 1]
[Figure 2]
[Figure 3]
[Figure 4]
[Figure 5]
[Figure 6]
[Figure 7]
(PZ) piperazine top
Crystal data top
C4H10N2F(000) = 96
Mr = 86.14Dx = 1.114 Mg m3
Monoclinic, P21/nMelting point: not measured K
Hall symbol: -p 2ynCu Kα radiation, λ = 1.5418 Å
a = 6.0817 (12) ÅCell parameters from 25 reflections
b = 5.2501 (4) Åθ = 36–50°
c = 8.4646 (14) ŵ = 0.55 mm1
β = 108.207 (14)°T = 293 K
V = 256.74 (7) Å3Prism, colorless
Z = 20.60 × 0.35 × 0.25 mm
Data collection top
CAD4
diffractometer
424 reflections with I > 2.00u(I)
Radiation source: xray tubeRint = 0.02
Graphite monochromatorθmax = 76.7°, θmin = 7.9°
ω scanh = 77
Absorption correction: for a cylinder mounted on the ϕ axis
psi scans
k = 06
Tmin = 0.77, Tmax = 0.87l = 010
535 measured reflections3 standard reflections every 120 min
453 independent reflections intensity decay: 0.2%
Refinement top
Refinement on F2 Method = Prince modified Chebychev polynomial, (Watkin, 1994) W = [weight] * [1-(deltaF/6*sigmaF)2]2
0.140E + 04 0.222E + 04 0.125E + 04 385.
R[F2 > 2σ(F2)] = 0.046(Δ/σ)max = 0.000139
wR(F2) = 0.111Δρmax = 0.17 e Å3
S = 1.04Δρmin = 0.10 e Å3
424 reflectionsExtinction correction: Larson 1970 Crystallographic Computing eq 22
33 parametersExtinction coefficient: 68.7 (48)
H atoms treated by a mixture of independent and constrained refinement
Crystal data top
C4H10N2V = 256.74 (7) Å3
Mr = 86.14Z = 2
Monoclinic, P21/nCu Kα radiation
a = 6.0817 (12) ŵ = 0.55 mm1
b = 5.2501 (4) ÅT = 293 K
c = 8.4646 (14) Å0.60 × 0.35 × 0.25 mm
β = 108.207 (14)°
Data collection top
CAD4
diffractometer
424 reflections with I > 2.00u(I)
Absorption correction: for a cylinder mounted on the ϕ axis
psi scans
Rint = 0.02
Tmin = 0.77, Tmax = 0.873 standard reflections every 120 min
535 measured reflections intensity decay: 0.2%
453 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.04633 parameters
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.04Δρmax = 0.17 e Å3
424 reflectionsΔρmin = 0.10 e Å3
Special details top

Experimental. crystals are very hygroscopic, transferred under dry N2 blanket and sealed in glass capillary

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.3631 (2)0.1225 (2)0.35460 (14)0.0531
C20.6083 (3)0.0807 (4)0.38357 (18)0.0585
C30.6820 (3)0.1576 (3)0.4868 (2)0.0543
H210.6979 (3)0.2299 (4)0.44433 (18)0.0713*
H220.6384 (3)0.0595 (4)0.27475 (18)0.0713*
H310.8509 (3)0.1887 (3)0.5074 (2)0.0645*
H320.5914 (3)0.3066 (3)0.4266 (2)0.0645*
H10.319 (4)0.262 (6)0.295 (2)0.082 (6)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0588 (9)0.0459 (8)0.0417 (8)0.0019 (5)0.0031 (6)0.0048 (3)
C20.0704 (12)0.053 (1)0.058 (1)0.0004 (7)0.0288 (8)0.0074 (6)
C30.0497 (9)0.047 (1)0.065 (1)0.0053 (5)0.0163 (7)0.0003 (6)
Geometric parameters (Å, º) top
N1—C21.450 (2)C2—H211.000
N1—C3i1.4634 (18)C2—H221.000
N1—H10.88 (3)C3—H311.000
C2—C31.512 (2)C3—H321.000
C2—N1—C3i110.0 (1)H21—C2—H22109.467
C2—N1—H1109.4 (14)N1i—C3—C2108.61 (12)
C3i—N1—H1108.1 (13)N1i—C3—H31109.72 (7)
N1—C2—C3109.05 (13)C2—C3—H31109.81 (9)
N1—C2—H21109.59 (9)N1i—C3—H32109.58 (8)
C3—C2—H21109.59 (9)C2—C3—H32109.64 (9)
N1—C2—H22109.63 (8)H31—C3—H32109.467
C3—C2—H22109.50 (9)
Symmetry code: (i) x+1, y, z+1.
(MORFCL) Morpholinium Chloride top
Crystal data top
C4H10ClNODx = 1.355 Mg m3
Mr = 123.58Melting point: not measured K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 5.7360 (16) ÅCell parameters from 1463 reflections
b = 10.618 (3) Åθ = 2.8–28.3°
c = 10.142 (3) ŵ = 0.52 mm1
β = 101.197 (5)°T = 213 K
V = 605.9 (3) Å3Plate, colorless
Z = 40.12 × 0.10 × 0.08 mm
F(000) = 264.000
Data collection top
Bruker SMART CCD
diffractometer
Rint = 0.06
Graphite monochromatorθmax = 28.3°, θmin = 2.8°
ω/2θ scansh = 77
4061 measured reflectionsk = 1414
1463 independent reflectionsl = 813
1152 reflections with I > 3.00u(I)
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.083 Method = Prince modified Chebychev polynomial, (Watkin, 1994) W = [weight] * [1-(deltaF/6*sigmaF)2]2
26.1 38.6 20.8 4.87
S = 0.96(Δ/σ)max = 0.010
1152 reflectionsΔρmax = 0.48 e Å3
70 parametersΔρmin = 0.25 e Å3
Crystal data top
C4H10ClNOV = 605.9 (3) Å3
Mr = 123.58Z = 4
Monoclinic, P21/cMo Kα radiation
a = 5.7360 (16) ŵ = 0.52 mm1
b = 10.618 (3) ÅT = 213 K
c = 10.142 (3) Å0.12 × 0.10 × 0.08 mm
β = 101.197 (5)°
Data collection top
Bruker SMART CCD
diffractometer
1152 reflections with I > 3.00u(I)
4061 measured reflectionsRint = 0.06
1463 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.03670 parameters
wR(F2) = 0.083H atoms treated by a mixture of independent and constrained refinement
S = 0.96Δρmax = 0.48 e Å3
1152 reflectionsΔρmin = 0.25 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.7568 (3)0.10418 (14)0.04171 (12)0.0376
C20.8146 (4)0.20882 (19)0.13083 (18)0.0374
C30.6726 (3)0.20495 (16)0.24100 (17)0.0314
N40.7152 (2)0.08438 (14)0.31597 (13)0.0243
C50.6741 (3)0.02534 (15)0.22235 (16)0.0304
C60.8161 (4)0.00982 (19)0.11312 (17)0.0364
Cl70.25380 (7)0.12399 (5)0.43960 (4)0.0339
H210.9878 (4)0.20574 (19)0.17179 (18)0.0442*
H220.7787 (4)0.28880 (19)0.07879 (18)0.0442*
H310.7218 (3)0.27669 (16)0.30417 (17)0.0369*
H320.4997 (3)0.21266 (16)0.20075 (17)0.0369*
H510.7241 (3)0.10453 (15)0.27343 (16)0.0358*
H520.5012 (3)0.03038 (15)0.18105 (16)0.0358*
H610.9892 (4)0.00909 (19)0.15446 (17)0.0439*
H620.7816 (4)0.08216 (19)0.04916 (17)0.0439*
H10.629 (5)0.075 (2)0.377 (2)0.0459*
H20.864 (5)0.083 (2)0.364 (2)0.0402*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0461 (8)0.0465 (8)0.0205 (6)0.0014 (6)0.0073 (6)0.0007 (5)
C20.045 (1)0.036 (1)0.0307 (9)0.0083 (8)0.0055 (8)0.0093 (7)
C30.0342 (9)0.0273 (9)0.0311 (8)0.0072 (6)0.0022 (7)0.0018 (6)
N40.0220 (6)0.0311 (7)0.0205 (6)0.0021 (5)0.0054 (5)0.0006 (5)
C50.0366 (9)0.0246 (9)0.0290 (8)0.0064 (6)0.0039 (7)0.0001 (6)
C60.042 (1)0.038 (1)0.0306 (8)0.0054 (8)0.0097 (7)0.0078 (7)
Cl70.0206 (2)0.0510 (3)0.0303 (2)0.00171 (16)0.00555 (14)0.00761 (18)
Geometric parameters (Å, º) top
O1—C21.430 (2)N4—C51.492 (2)
O1—C61.418 (2)N4—H10.87 (3)
C2—C31.505 (3)N4—H20.90 (3)
C2—H211.000C5—C61.506 (2)
C2—H221.000C5—H511.000
C3—N41.485 (2)C5—H521.000
C3—H311.000C6—H611.000
C3—H321.000C6—H621.000
C2—O1—C6109.71 (13)C3—N4—H2109.9 (16)
O1—C2—C3110.82 (15)C5—N4—H2110.4 (15)
O1—C2—H21109.08 (11)H1—N4—H2103 (2)
C3—C2—H21109.1 (1)N4—C5—C6109.95 (14)
O1—C2—H22109.12 (9)N4—C5—H51109.44 (8)
C3—C2—H22109.2 (1)C6—C5—H51109.3 (1)
H21—C2—H22109.467N4—C5—H52109.26 (9)
C2—C3—N4110.15 (14)C6—C5—H52109.4 (1)
C2—C3—H31109.2 (1)H51—C5—H52109.467
N4—C3—H31109.32 (8)O1—C6—C5111.02 (15)
C2—C3—H32109.4 (1)O1—C6—H61109.1 (1)
N4—C3—H32109.35 (9)C5—C6—H61109.1 (1)
H31—C3—H32109.467O1—C6—H62109.08 (9)
C3—N4—C5110.93 (12)C5—C6—H62109.0 (1)
C3—N4—H1113.5 (17)H61—C6—H62109.467
C5—N4—H1109.0 (17)
(MORPHI) morpholinium iodide top
Crystal data top
C4H10INODx = 2.022 Mg m3
Mr = 215.03Melting point: not measured K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 6.6521 (3) ÅCell parameters from 25 reflections
b = 10.4682 (8) Åθ = 18–22°
c = 10.2590 (4) ŵ = 4.44 mm1
β = 98.703 (4)°T = 294 K
V = 706.17 (7) Å3Plate, colorless
Z = 40.66 × 0.26 × 0.08 mm
F(000) = 408.000
Data collection top
Enraf-Nonius CAD-4
diffractometer
Rint = 0.01
Graphite monochromatorθmax = 26.3°, θmin = 2.8°
ω/2θ scansh = 88
Absorption correction: ψ scan
Azimutal absorption correction (North et al, 1968)
k = 130
Tmin = 0.39, Tmax = 0.70l = 120
1600 measured reflections3 standard reflections every 0 reflections
1519 independent reflections intensity decay: 0.0%
1323 reflections with I > 2.00u(I)
Refinement top
Refinement on FHydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.018 Method = Prince modified Chebychev polynomial, (Watkin, 1994) W = [weight] * [1-(deltaF/6*sigmaF)2]2
0.710 -0.154 0.397 -0.143 0.253E-01
wR(F2) = 0.019(Δ/σ)max = 0.002
S = 1.11Δρmax = 0.70 e Å3
1323 reflectionsΔρmin = 0.49 e Å3
73 parametersExtinction correction: Larson 1970 Crystallographic Computing eq 22
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 80.2 (19)
Crystal data top
C4H10INOV = 706.17 (7) Å3
Mr = 215.03Z = 4
Monoclinic, P21/cMo Kα radiation
a = 6.6521 (3) ŵ = 4.44 mm1
b = 10.4682 (8) ÅT = 294 K
c = 10.2590 (4) Å0.66 × 0.26 × 0.08 mm
β = 98.703 (4)°
Data collection top
Enraf-Nonius CAD-4
diffractometer
1323 reflections with I > 2.00u(I)
Absorption correction: ψ scan
Azimutal absorption correction (North et al, 1968)
Rint = 0.01
Tmin = 0.39, Tmax = 0.703 standard reflections every 0 reflections
1600 measured reflections intensity decay: 0.0%
1519 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.01873 parameters
wR(F2) = 0.019H atoms treated by a mixture of independent and constrained refinement
S = 1.11Δρmax = 0.70 e Å3
1323 reflectionsΔρmin = 0.49 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.7158 (3)0.0872 (2)0.7922 (2)0.0359
C20.6806 (4)0.2107 (2)0.7220 (3)0.0449
C30.8000 (5)0.2150 (3)0.6080 (3)0.0494
O40.7465 (3)0.11048 (17)0.52046 (17)0.0494
C50.7959 (5)0.0062 (3)0.5876 (3)0.0504
C60.6772 (4)0.0235 (2)0.7002 (3)0.0466
I70.24388 (2)0.115476 (16)0.914979 (17)0.0436
H210.7176 (4)0.2829 (2)0.7848 (3)0.0513*
H220.5332 (4)0.2167 (2)0.6842 (3)0.0513*
H310.9476 (5)0.2073 (3)0.6448 (3)0.0654*
H320.7755 (5)0.2978 (3)0.5596 (3)0.0654*
H510.9435 (5)0.0041 (3)0.6254 (3)0.0594*
H520.7694 (5)0.0796 (3)0.5250 (3)0.0594*
H610.7121 (4)0.1062 (2)0.7470 (3)0.0532*
H620.5294 (4)0.0229 (2)0.6627 (3)0.0532*
H70.827 (5)0.086 (3)0.832 (3)0.040 (7)*
H100.640 (5)0.080 (3)0.851 (3)0.055 (9)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.034 (1)0.0457 (11)0.0286 (9)0.0031 (8)0.0072 (8)0.0018 (8)
C20.0530 (14)0.0405 (13)0.0415 (13)0.0073 (11)0.0078 (11)0.001 (1)
C30.0670 (17)0.0407 (14)0.0411 (13)0.0053 (12)0.0103 (12)0.0063 (11)
O40.0668 (13)0.0525 (11)0.0290 (9)0.0003 (8)0.0077 (8)0.0007 (7)
C50.0673 (17)0.0453 (14)0.0407 (13)0.0036 (12)0.0145 (12)0.0042 (11)
C60.0546 (15)0.0395 (13)0.0464 (13)0.0092 (11)0.0094 (11)0.0015 (11)
I70.03072 (11)0.04955 (13)0.05061 (13)0.00162 (6)0.00685 (7)0.01399 (7)
Geometric parameters (Å, º) top
N1—C21.481 (3)C3—H311.000
N1—C61.493 (3)C3—H321.000
N1—H70.79 (3)O4—C51.416 (3)
N1—H100.84 (3)C5—C61.505 (4)
C2—C31.510 (4)C5—H511.000
C2—H211.000C5—H521.000
C2—H221.000C6—H611.000
C3—O41.426 (3)C6—H621.000
C2—N1—C6111.8 (2)O4—C3—H32110.23 (13)
C2—N1—H7110 (2)H31—C3—H32109.467
C6—N1—H7112 (2)C3—O4—C5109.7 (2)
C2—N1—H10111 (2)O4—C5—C6111.5 (2)
C6—N1—H10109 (2)O4—C5—H51108.13 (15)
H7—N1—H10104 (3)C6—C5—H51107.66 (16)
N1—C2—C3109.8 (2)O4—C5—H52110.19 (13)
N1—C2—H21109.92 (13)C6—C5—H52109.78 (15)
C3—C2—H21111.70 (15)H51—C5—H52109.467
N1—C2—H22108.50 (14)N1—C6—C5109.4 (2)
C3—C2—H22107.33 (16)N1—C6—H61111.32 (13)
H21—C2—H22109.467C5—C6—H61111.24 (15)
C2—C3—O4110.8 (2)N1—C6—H62107.63 (14)
C2—C3—H31107.85 (16)C5—C6—H62107.67 (16)
O4—C3—H31108.30 (15)H61—C6—H62109.467
C2—C3—H32110.18 (14)
(PDA8DO) 1,4-phenylenediamine.1,8-octanediol (1/1) top
Crystal data top
C6H8N2·C8H18O2Dx = 1.131 Mg m3
Mr = 254.37Melting point: not measured K
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 36.190 (6) ÅCell parameters from 1776 reflections
b = 5.1258 (8) Åθ = 1.2–27.9°
c = 8.2222 (13) ŵ = 0.08 mm1
β = 101.773 (5)°T = 293 K
V = 1493.2 (4) Å3Prism, colorless
Z = 40.75 × 0.30 × 0.25 mm
F(000) = 560.000
Data collection top
Bruker CCD
diffractometer
Rint = 0.02
Graphite monochromatorθmax = 27.9°, θmin = 1.2°
ω/2θ scansh = 4744
5234 measured reflectionsk = 66
1776 independent reflectionsl = 710
1087 reflections with I > 3.00u(I)
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.038 Method = Prince modified Chebychev polynomial, (Watkin, 1994) W = [weight] * [1-(deltaF/6*sigmaF)2]2
6.89 9.46 3.19
wR(F2) = 0.094(Δ/σ)max = 0.000289
S = 1.03Δρmax = 0.24 e Å3
1087 reflectionsΔρmin = 0.27 e Å3
95 parametersExtinction correction: Larson 1970 Crystallographic Computing eq 22
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 190.0 (78)
Crystal data top
C6H8N2·C8H18O2V = 1493.2 (4) Å3
Mr = 254.37Z = 4
Monoclinic, C2/cMo Kα radiation
a = 36.190 (6) ŵ = 0.08 mm1
b = 5.1258 (8) ÅT = 293 K
c = 8.2222 (13) Å0.75 × 0.30 × 0.25 mm
β = 101.773 (5)°
Data collection top
Bruker CCD
diffractometer
1087 reflections with I > 3.00u(I)
5234 measured reflectionsRint = 0.02
1776 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.03895 parameters
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.03Δρmax = 0.24 e Å3
1087 reflectionsΔρmin = 0.27 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.32792 (3)0.2021 (3)1.00887 (18)0.0448
C20.28841 (4)0.2226 (3)1.00136 (15)0.0346
C30.26785 (4)0.4209 (3)0.91157 (17)0.0391
C40.22977 (4)0.4478 (3)0.91022 (17)0.0391
O50.35756 (3)0.3484 (3)0.68578 (16)0.0546
C60.39484 (4)0.4139 (3)0.7663 (2)0.0476
C70.41645 (4)0.1679 (3)0.8227 (2)0.0471
C80.45699 (4)0.2208 (3)0.9096 (2)0.0482
C90.47959 (4)0.0260 (3)0.9577 (2)0.0488
H310.28063 (4)0.5466 (3)0.84806 (17)0.0484*
H410.21513 (4)0.5911 (3)0.84384 (17)0.0469*
H610.40752 (4)0.5104 (3)0.6873 (2)0.0578*
H620.39414 (4)0.5263 (3)0.8651 (2)0.0578*
H710.41672 (4)0.0570 (3)0.7229 (2)0.0564*
H720.40328 (4)0.0726 (3)0.9006 (2)0.0564*
H810.46965 (4)0.3252 (3)0.8339 (2)0.0573*
H820.45663 (4)0.3234 (3)1.0127 (2)0.0573*
H910.47944 (4)0.1304 (3)0.8549 (2)0.0581*
H920.46723 (4)0.1284 (3)1.0354 (2)0.0581*
H10.3340 (5)0.230 (4)0.913 (3)0.057 (6)*
H20.3479 (5)0.492 (4)0.629 (3)0.055 (5)*
H30.3376 (5)0.041 (4)1.052 (3)0.059 (5)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0327 (6)0.0516 (8)0.0484 (7)0.0016 (5)0.0042 (5)0.0038 (6)
C20.0333 (6)0.0354 (7)0.0331 (6)0.0038 (5)0.0018 (5)0.0065 (5)
C30.0420 (7)0.0362 (7)0.0391 (7)0.0054 (5)0.0083 (5)0.0022 (5)
C40.0422 (7)0.0356 (6)0.0370 (6)0.0023 (6)0.0023 (5)0.0036 (5)
O50.0348 (6)0.0534 (7)0.0681 (7)0.0012 (5)0.0069 (5)0.0157 (6)
C60.0346 (7)0.0483 (8)0.0555 (9)0.0025 (6)0.0013 (6)0.0097 (7)
C70.0322 (7)0.0483 (8)0.0576 (9)0.0057 (6)0.0018 (6)0.0058 (7)
C80.0329 (7)0.0523 (9)0.0558 (8)0.0073 (6)0.0007 (6)0.0015 (7)
C90.0325 (7)0.0538 (9)0.0575 (9)0.0087 (6)0.0032 (6)0.0039 (7)
Geometric parameters (Å, º) top
N1—C21.4222 (17)C6—H611.000
N1—H10.88 (2)C6—H621.000
N1—H30.94 (2)C7—C81.520 (2)
C2—C31.3814 (18)C7—H711.000
C2—C4i1.386 (2)C7—H721.000
C3—C41.3825 (19)C8—C91.514 (2)
C3—H311.000C8—H811.000
C4—H411.000C8—H821.000
O5—C61.4167 (17)C9—C9ii1.523 (3)
O5—H20.90 (2)C9—H911.000
C6—C71.506 (2)C9—H921.000
C2—N1—H1112.6 (13)C6—C7—C8112.72 (14)
C2—N1—H3112.2 (11)C6—C7—H71108.35 (9)
H1—N1—H3110.1 (17)C8—C7—H71108.48 (9)
N1—C2—C3120.33 (13)C6—C7—H72108.71 (9)
N1—C2—C4i120.77 (13)C8—C7—H72109.07 (9)
C3—C2—C4i118.84 (12)H71—C7—H72109.467
C2—C3—C4120.35 (12)C7—C8—C9113.07 (13)
C2—C3—H31119.79 (8)C7—C8—H81108.91 (9)
C4—C3—H31119.86 (8)C9—C8—H81108.54 (9)
C2i—C4—C3120.81 (13)C7—C8—H82108.30 (9)
C2i—C4—H41119.58 (8)C9—C8—H82108.5 (1)
C3—C4—H41119.61 (8)H81—C8—H82109.467
C6—O5—H2106.3 (12)C8—C9—C9ii113.28 (18)
O5—C6—C7109.32 (13)C8—C9—H91108.5 (1)
O5—C6—H61109.46 (8)C9ii—C9—H91108.46 (13)
C7—C6—H61109.64 (9)C8—C9—H92108.50 (9)
O5—C6—H62109.67 (9)C9ii—C9—H92108.61 (13)
C7—C6—H62109.27 (9)H91—C9—H92109.467
H61—C6—H62109.467
Symmetry codes: (i) x+1/2, y+1/2, z+2; (ii) x+1, y, z+2.
(PDA10D) 1,4-phenylenediamine.1,10-decanediol (1/1) top
Crystal data top
C6H8N2·C10H22O2Dx = 1.155 Mg m3
Mr = 282.43Melting point: not measured K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 19.453 (2) ÅCell parameters from 2017 reflections
b = 5.1589 (6) Åθ = 1.1–28.3°
c = 8.180 (1) ŵ = 0.08 mm1
β = 98.398 (3)°T = 293 K
V = 812.08 (17) Å3Prism, colorless
Z = 20.35 × 0.30 × 0.05 mm
F(000) = 312.000
Data collection top
Bruker CCD
diffractometer
Rint = 0.03
Graphite monochromatorθmax = 28.3°, θmin = 1.1°
ω/2θ scansh = 2524
5982 measured reflectionsk = 66
2017 independent reflectionsl = 710
1051 reflections with I > 3.00u(I)
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.090 Method = Prince modified Chebychev polynomial, (Watkin, 1994) W = [weight] * [1-(deltaF/6*sigmaF)2]2
94.7 149. 108. 43.5 17.7
S = 0.94(Δ/σ)max = 0.007
1051 reflectionsΔρmax = 0.24 e Å3
103 parametersΔρmin = 0.28 e Å3
Crystal data top
C6H8N2·C10H22O2V = 812.08 (17) Å3
Mr = 282.43Z = 2
Monoclinic, P21/cMo Kα radiation
a = 19.453 (2) ŵ = 0.08 mm1
b = 5.1589 (6) ÅT = 293 K
c = 8.180 (1) Å0.35 × 0.30 × 0.05 mm
β = 98.398 (3)°
Data collection top
Bruker CCD
diffractometer
1051 reflections with I > 3.00u(I)
5982 measured reflectionsRint = 0.03
2017 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.035103 parameters
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 0.94Δρmax = 0.24 e Å3
1051 reflectionsΔρmin = 0.28 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.46909 (8)0.1762 (3)0.09427 (19)0.0259
C20.53927 (8)0.1945 (3)0.08303 (19)0.0259
C30.57079 (7)0.0194 (3)0.01116 (18)0.0226
N40.64393 (7)0.0308 (3)0.01786 (19)0.0284
C50.01700 (8)0.3690 (3)0.0222 (2)0.0262
C60.09147 (8)0.3906 (3)0.1107 (2)0.0260
C70.12608 (8)0.1283 (3)0.1508 (2)0.0264
C80.20076 (8)0.1516 (3)0.2385 (2)0.0259
C90.23361 (8)0.1105 (3)0.2825 (2)0.0274
O100.30307 (6)0.0721 (2)0.35958 (16)0.0337
H10.6530 (9)0.002 (4)0.119 (3)0.034 (5)*
H20.661 (1)0.180 (4)0.013 (3)0.043 (6)*
H30.318 (1)0.210 (5)0.407 (3)0.045 (6)*
H110.44708 (8)0.3043 (3)0.16242 (19)0.0310*
H210.56755 (8)0.3359 (3)0.14358 (19)0.0306*
H510.01128 (8)0.2748 (3)0.0959 (2)0.0308*
H520.01742 (8)0.2678 (3)0.0819 (2)0.0308*
H610.09091 (8)0.4875 (3)0.2164 (2)0.0306*
H620.11946 (8)0.4893 (3)0.0383 (2)0.0306*
H710.09836 (8)0.0301 (3)0.2239 (2)0.0308*
H720.12640 (8)0.0308 (3)0.0453 (2)0.0308*
H810.20077 (8)0.2540 (3)0.3423 (2)0.0306*
H820.22901 (8)0.2442 (3)0.1640 (2)0.0306*
H910.20678 (8)0.2031 (3)0.3601 (2)0.0321*
H920.23338 (8)0.2161 (3)0.1800 (2)0.0321*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0261 (8)0.0241 (8)0.0271 (8)0.0032 (6)0.0025 (6)0.0026 (6)
C20.0271 (8)0.0225 (8)0.0268 (7)0.0030 (6)0.0006 (6)0.0030 (7)
C30.0202 (7)0.0224 (8)0.0240 (7)0.0021 (6)0.0008 (5)0.0049 (6)
N40.0215 (7)0.0309 (8)0.0323 (8)0.0002 (6)0.0024 (5)0.0012 (7)
C50.0201 (8)0.0251 (8)0.0316 (8)0.0026 (6)0.0019 (6)0.0022 (7)
C60.0205 (7)0.0255 (8)0.0306 (8)0.0025 (6)0.0011 (6)0.0019 (6)
C70.0217 (8)0.0256 (8)0.0299 (8)0.0028 (6)0.0031 (6)0.0017 (7)
C80.0195 (7)0.0252 (8)0.0316 (8)0.0025 (6)0.0013 (6)0.0015 (7)
C90.0194 (7)0.0264 (9)0.0344 (8)0.0015 (6)0.0027 (6)0.0034 (7)
O100.0228 (6)0.0273 (7)0.0470 (7)0.0029 (5)0.0083 (5)0.0074 (6)
Geometric parameters (Å, º) top
C1—C21.385 (2)C6—H611.000
C1—C3i1.389 (2)C6—H621.000
C1—H111.000C7—C81.528 (2)
C2—C31.387 (2)C7—H711.000
C2—H211.000C7—H721.000
C3—N41.4330 (19)C8—C91.516 (2)
N4—H10.88 (2)C8—H811.000
N4—H20.86 (2)C8—H821.000
C5—C5ii1.525 (3)C9—O101.4189 (18)
C5—C61.526 (2)C9—H911.000
C5—H511.000C9—H921.000
C5—H521.000O10—H30.84 (2)
C6—C71.526 (2)
C2—C1—C3i120.18 (14)C7—C6—H62108.48 (9)
C2—C1—H11119.90 (9)H61—C6—H62109.466
C3i—C1—H11119.92 (9)C6—C7—C8113.01 (13)
C1—C2—C3120.82 (14)C6—C7—H71108.57 (9)
C1—C2—H21119.55 (9)C8—C7—H71108.52 (9)
C3—C2—H21119.63 (9)C6—C7—H72108.60 (9)
C1i—C3—C2119.00 (13)C8—C7—H72108.63 (9)
C1i—C3—N4119.88 (14)H71—C7—H72109.467
C2—C3—N4121.07 (14)C7—C8—C9112.35 (13)
C3—N4—H1111.3 (12)C7—C8—H81108.81 (9)
C3—N4—H2112.1 (14)C9—C8—H81108.76 (9)
H1—N4—H2107.5 (19)C7—C8—H82108.70 (9)
C5ii—C5—C6113.39 (17)C9—C8—H82108.71 (9)
C5ii—C5—H51108.47 (12)H81—C8—H82109.466
C6—C5—H51108.49 (9)C8—C9—O10108.78 (13)
C5ii—C5—H52108.50 (12)C8—C9—H91109.61 (9)
C6—C5—H52108.48 (9)O10—C9—H91109.66 (9)
H51—C5—H52109.467C8—C9—H92109.66 (9)
C5—C6—C7113.32 (13)O10—C9—H92109.65 (9)
C5—C6—H61108.50 (9)H91—C9—H92109.466
C7—C6—H61108.52 (9)C9—O10—H3109.0 (14)
C5—C6—H62108.51 (9)
Symmetry codes: (i) x+1, y, z; (ii) x, y1, z.
(PDA12D) 1,4-phenylenediamine.1,12-dodecanediol (1/1) top
Crystal data top
C6H8N2·C12H26O2Dx = 1.098 Mg m3
Mr = 310.48Melting point: not measured K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 22.2081 (14) ÅCell parameters from 2260 reflections
b = 5.1843 (9) Åθ = 0.9–28.3°
c = 8.217 (4) ŵ = 0.07 mm1
β = 96.818 (3)°T = 293 K
V = 939.4 (5) Å3Prism, colorless
Z = 20.26 × 0.18 × 0.08 mm
F(000) = 344.000
Data collection top
Bruker CCD
diffractometer
Rint = 0.08
Graphite monochromatorθmax = 28.3°, θmin = 0.9°
ω/2θ scansh = 2329
6256 measured reflectionsk = 66
2260 independent reflectionsl = 1010
1143 reflections with I > 3.00u(I)
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.037 Method = Prince modified Chebychev polynomial, (Watkin, 1994) W = [weight] * [1-(deltaF/6*sigmaF)2]2
5.77 7.86 2.57
wR(F2) = 0.090(Δ/σ)max = 0.000293
S = 0.96Δρmax = 0.21 e Å3
1143 reflectionsΔρmin = 0.20 e Å3
113 parametersExtinction correction: Larson 1970 Crystallographic Computing eq 22
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 95.4 (50)
Crystal data top
C6H8N2·C12H26O2V = 939.4 (5) Å3
Mr = 310.48Z = 2
Monoclinic, P21/cMo Kα radiation
a = 22.2081 (14) ŵ = 0.07 mm1
b = 5.1843 (9) ÅT = 293 K
c = 8.217 (4) Å0.26 × 0.18 × 0.08 mm
β = 96.818 (3)°
Data collection top
Bruker CCD
diffractometer
1143 reflections with I > 3.00u(I)
6256 measured reflectionsRint = 0.08
2260 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.037113 parameters
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 0.96Δρmax = 0.21 e Å3
1143 reflectionsΔρmin = 0.20 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.47169 (7)0.1707 (3)0.59489 (19)0.0388
C20.53283 (8)0.1963 (3)0.5808 (2)0.0382
C30.56185 (7)0.0262 (3)0.48628 (18)0.0337
N40.62553 (7)0.0445 (4)0.4768 (2)0.0446
C50.03318 (7)0.5196 (4)0.5336 (2)0.0494
C60.06774 (7)0.2692 (4)0.5697 (2)0.0487
C70.13386 (7)0.3091 (4)0.6380 (2)0.0465
C80.16843 (8)0.0573 (4)0.6752 (2)0.0456
C90.23398 (7)0.1002 (4)0.7485 (2)0.0448
C100.26665 (7)0.1486 (4)0.7952 (2)0.0460
O110.32711 (6)0.0933 (3)0.86189 (19)0.0544
H110.45155 (7)0.2950 (3)0.66415 (19)0.0455*
H210.55641 (8)0.3397 (3)0.6396 (2)0.0445*
H510.03487 (7)0.6212 (4)0.6375 (2)0.0572*
H520.05341 (7)0.6191 (4)0.4510 (2)0.0572*
H610.04736 (7)0.1690 (4)0.6516 (2)0.0560*
H620.06637 (7)0.1682 (4)0.4657 (2)0.0560*
H710.13524 (7)0.4112 (4)0.7416 (2)0.0541*
H720.15432 (7)0.4082 (4)0.5558 (2)0.0541*
H810.14731 (8)0.0446 (4)0.7547 (2)0.0536*
H820.16832 (8)0.0424 (4)0.5709 (2)0.0536*
H910.23425 (7)0.2092 (4)0.8490 (2)0.0520*
H920.25587 (7)0.1923 (4)0.6662 (2)0.0520*
H1010.24542 (7)0.2421 (4)0.8783 (2)0.0534*
H1020.26709 (7)0.2589 (4)0.6955 (2)0.0534*
H10.641 (1)0.193 (5)0.507 (3)0.062 (7)*
H20.6332 (11)0.008 (5)0.380 (4)0.072 (8)*
H30.341 (1)0.227 (5)0.909 (3)0.069 (7)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0410 (9)0.0352 (8)0.0405 (8)0.0053 (7)0.0055 (7)0.0045 (7)
C20.0407 (9)0.0343 (8)0.0383 (8)0.0030 (7)0.0011 (6)0.0024 (7)
C30.0306 (7)0.0352 (8)0.0338 (7)0.0035 (6)0.0022 (6)0.0056 (6)
N40.0309 (7)0.050 (1)0.052 (1)0.0012 (7)0.0021 (6)0.0024 (8)
C50.0324 (8)0.052 (1)0.0617 (11)0.0120 (8)0.0024 (8)0.0006 (9)
C60.0326 (9)0.0537 (11)0.0578 (11)0.0124 (8)0.0029 (7)0.0003 (8)
C70.0318 (9)0.0500 (11)0.056 (1)0.0097 (7)0.0016 (7)0.0043 (9)
C80.0328 (8)0.048 (1)0.054 (1)0.0091 (7)0.0024 (7)0.0021 (8)
C90.0305 (8)0.046 (1)0.057 (1)0.0049 (7)0.0006 (7)0.0069 (8)
C100.0341 (9)0.045 (1)0.056 (1)0.0022 (7)0.0045 (7)0.0099 (9)
O110.0342 (7)0.0531 (9)0.0717 (9)0.0030 (6)0.0109 (6)0.0154 (7)
Geometric parameters (Å, º) top
C1—C21.383 (2)C6—H621.000
C1—C3i1.387 (2)C7—C81.527 (2)
C1—H111.000C7—H711.000
C2—C31.384 (2)C7—H721.000
C2—H211.000C8—C91.524 (2)
C3—N41.429 (2)C8—H811.000
N4—H10.86 (3)C8—H821.000
N4—H20.86 (3)C9—C101.507 (2)
C5—C5ii1.525 (3)C9—H911.000
C5—C61.520 (2)C9—H921.000
C5—H511.000C10—O111.418 (2)
C5—H521.000C10—H1011.000
C6—C71.523 (2)C10—H1021.000
C6—H611.000O11—H30.83 (3)
C2—C1—C3i120.48 (15)C6—C7—H71108.46 (11)
C2—C1—H11119.7 (1)C8—C7—H71108.6 (1)
C3i—C1—H11119.80 (9)C6—C7—H72108.45 (11)
C1—C2—C3120.87 (15)C8—C7—H72108.4 (1)
C1—C2—H21119.6 (1)H71—C7—H72109.467
C3—C2—H21119.51 (9)C7—C8—C9112.84 (16)
C1i—C3—C2118.65 (14)C7—C8—H81108.6 (1)
C1i—C3—N4120.09 (15)C9—C8—H81108.6 (1)
C2—C3—N4121.21 (15)C7—C8—H82108.7 (1)
C3—N4—H1113.2 (14)C9—C8—H82108.6 (1)
C3—N4—H2110.1 (16)H81—C8—H82109.467
H1—N4—H2111 (2)C8—C9—C10112.59 (16)
C5ii—C5—C6113.6 (2)C8—C9—H91108.7 (1)
C5ii—C5—H51108.42 (15)C10—C9—H91108.55 (11)
C6—C5—H51108.43 (11)C8—C9—H92108.7 (1)
C5ii—C5—H52108.44 (16)C10—C9—H92108.8 (1)
C6—C5—H52108.42 (11)H91—C9—H92109.467
H51—C5—H52109.467C9—C10—O11109.32 (16)
C5—C6—C7113.48 (16)C9—C10—H101109.7 (1)
C5—C6—H61108.47 (11)O11—C10—H101109.6 (1)
C7—C6—H61108.44 (11)C9—C10—H102109.40 (11)
C5—C6—H62108.48 (11)O11—C10—H102109.35 (11)
C7—C6—H62108.45 (11)H101—C10—H102109.467
H61—C6—H62109.467C10—O11—H3106.5 (16)
C6—C7—C8113.42 (16)
Symmetry codes: (i) x+1, y, z+1; (ii) x, y1, z+1.
(AMHXOL) 6-amino-1-hexanol top
Crystal data top
C6H15NODx = 1.046 Mg m3
Mr = 117.19Melting point: not measured K
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
a = 15.4577 (12) ÅCell parameters from 3511 reflections
b = 17.5074 (12) Åθ = 2.6–26.6°
c = 10.9970 (7) ŵ = 0.07 mm1
V = 2976.1 (4) Å3T = 293 K
Z = 16Prism, colorless
F(000) = 1056.0000.40 × 0.40 × 0.38 mm
Data collection top
Siemens P4
diffractometer
Rint = 0.08
Graphite monochromatorθmax = 26.6°, θmin = 2.6°
ω/2θ scansh = 1919
17546 measured reflectionsk = 2121
1323 independent reflectionsl = 1213
560 reflections with I > 2.00u(I)
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.085 Method = Prince modified Chebychev polynomial, (Watkin, 1994) W = [weight] * [1-(deltaF/6*sigmaF)2]2
80.9 127. 62.7 15.1
wR(F2) = 0.226(Δ/σ)max = 0.006
S = 1.07Δρmax = 0.39 e Å3
560 reflectionsΔρmin = 0.44 e Å3
56 parametersExtinction correction: Larson 1970 Crystallographic Computing eq 22
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 242.4 (436)
Crystal data top
C6H15NOV = 2976.1 (4) Å3
Mr = 117.19Z = 16
Orthorhombic, Fdd2Mo Kα radiation
a = 15.4577 (12) ŵ = 0.07 mm1
b = 17.5074 (12) ÅT = 293 K
c = 10.9970 (7) Å0.40 × 0.40 × 0.38 mm
Data collection top
Siemens P4
diffractometer
560 reflections with I > 2.00u(I)
17546 measured reflectionsRint = 0.08
1323 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.08556 parameters
wR(F2) = 0.226H atoms treated by a mixture of independent and constrained refinement
S = 1.07Δρmax = 0.39 e Å3
560 reflectionsΔρmin = 0.44 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.0717 (4)0.1382 (3)1.5377 (5)0.0619
C20.1044 (4)0.1835 (4)1.4408 (7)0.0504 (16)*
C30.0713 (4)0.1545 (4)1.3188 (6)0.0467 (14)*
C40.1098 (5)0.1966 (4)1.2117 (7)0.0548 (16)*
C50.0779 (4)0.1677 (4)1.0896 (6)0.0499 (14)*
C60.1248 (5)0.2006 (4)0.9809 (6)0.0508 (15)*
C70.0919 (4)0.1721 (3)0.8593 (6)0.0494 (14)*
N80.1405 (4)0.1976 (4)0.7525 (6)0.0517
H90.0846 (4)0.2373 (4)1.4524 (7)0.0554*
H100.1691 (4)0.1817 (4)1.4419 (7)0.0554*
H110.0070 (4)0.1602 (4)1.3167 (6)0.0581*
H120.0868 (4)0.0992 (4)1.3120 (6)0.0581*
H130.0943 (5)0.2519 (4)1.2189 (7)0.0597*
H140.1741 (5)0.1909 (4)1.2141 (7)0.0597*
H150.0150 (4)0.1803 (4)1.0830 (6)0.0572*
H160.0856 (4)0.1110 (4)1.0880 (6)0.0572*
H170.1173 (5)0.2573 (4)0.9827 (6)0.0593*
H180.1877 (5)0.1878 (4)0.9874 (6)0.0593*
H190.0304 (4)0.1889 (3)0.8499 (6)0.0568*
H200.0945 (4)0.1150 (3)0.8606 (6)0.0568*
H10.135 (5)0.245 (6)0.765 (8)0.07 (2)*
H20.202 (8)0.171 (5)0.760 (11)0.09 (3)*
H30.093 (7)0.156 (6)1.595 (13)0.09 (3)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.083 (3)0.077 (3)0.026 (2)0.021 (2)0.005 (2)0.006 (2)
N80.072 (4)0.064 (3)0.018 (2)0.003 (3)0.001 (2)0.004 (2)
Geometric parameters (Å, º) top
O1—C21.421 (8)C5—C61.513 (9)
O1—H30.78 (14)C5—H151.000
C2—C31.523 (9)C5—H161.000
C2—H91.000C6—C71.515 (9)
C2—H101.000C6—H171.000
C3—C41.512 (9)C6—H181.000
C3—H111.000C7—N81.465 (8)
C3—H121.000C7—H191.000
C4—C51.517 (9)C7—H201.000
C4—H131.000N8—H10.84 (9)
C4—H141.000N8—H21.07 (12)
C2—O1—H3103 (8)C4—C5—H15107.9 (3)
O1—C2—C3110.8 (5)C6—C5—H15109.0 (3)
O1—C2—H9108.7 (3)C4—C5—H16107.9 (3)
C3—C2—H9108.9 (3)C6—C5—H16107.8 (3)
O1—C2—H10109.2 (4)H15—C5—H16109.466
C3—C2—H10109.6 (3)C5—C6—C7114.3 (5)
H9—C2—H10109.468C5—C6—H17107.8 (3)
C2—C3—C4113.1 (5)C7—C6—H17107.8 (4)
C2—C3—H11108.8 (3)C5—C6—H18109.0 (3)
C4—C3—H11108.9 (4)C7—C6—H18108.5 (3)
C2—C3—H12108.0 (3)H17—C6—H18109.466
C4—C3—H12108.6 (3)C6—C7—N8115.7 (5)
H11—C3—H12109.466C6—C7—H19108.3 (3)
C3—C4—C5113.5 (5)N8—C7—H19108.4 (4)
C3—C4—H13108.5 (3)C6—C7—H20107.6 (3)
C5—C4—H13108.3 (3)N8—C7—H20107.2 (3)
C3—C4—H14108.8 (4)H19—C7—H20109.466
C5—C4—H14108.2 (3)C7—N8—H197 (6)
H13—C4—H14109.468C7—N8—H2105 (6)
C4—C5—C6114.7 (5)H1—N8—H2120 (8)

Experimental details

(PZ)(MORFCL)(MORPHI)(PDA8DO)
Crystal data
Chemical formulaC4H10N2C4H10ClNOC4H10INOC6H8N2·C8H18O2
Mr86.14123.58215.03254.37
Crystal system, space groupMonoclinic, P21/nMonoclinic, P21/cMonoclinic, P21/cMonoclinic, C2/c
Temperature (K)293213294293
a, b, c (Å)6.0817 (12), 5.2501 (4), 8.4646 (14)5.7360 (16), 10.618 (3), 10.142 (3)6.6521 (3), 10.4682 (8), 10.2590 (4)36.190 (6), 5.1258 (8), 8.2222 (13)
α, β, γ (°)90, 108.207 (14), 9090, 101.197 (5), 9090, 98.703 (4), 9090, 101.773 (5), 90
V3)256.74 (7)605.9 (3)706.17 (7)1493.2 (4)
Z2444
Radiation typeCu KαMo KαMo KαMo Kα
µ (mm1)0.550.524.440.08
Crystal size (mm)0.60 × 0.35 × 0.250.12 × 0.10 × 0.080.66 × 0.26 × 0.080.75 × 0.30 × 0.25
Data collection
DiffractometerCAD4
diffractometer
Bruker SMART CCD
diffractometer
Enraf-Nonius CAD-4
diffractometer
Bruker CCD
diffractometer
Absorption correctionFor a cylinder mounted on the ϕ axis
psi scans
ψ scan
Azimutal absorption correction (North et al, 1968)
Tmin, Tmax0.77, 0.870.39, 0.70
No. of measured, independent and
observed reflections
535, 453, 424 [I > 2.00u(I)]4061, 1463, 1152 [I > 3.00u(I)]1600, 1519, 1323 [I > 2.00u(I)]5234, 1776, 1087 [I > 3.00u(I)]
Rint0.020.060.010.02
(sin θ/λ)max1)0.6310.6670.6230.658
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.046, 0.111, 1.04 0.036, 0.083, 0.96 0.018, 0.019, 1.11 0.038, 0.094, 1.03
No. of reflections424115213231087
No. of parameters33707395
No. of restraints????
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.17, 0.100.48, 0.250.70, 0.490.24, 0.27


(PDA10D)(PDA12D)(AMHXOL)
Crystal data
Chemical formulaC6H8N2·C10H22O2C6H8N2·C12H26O2C6H15NO
Mr282.43310.48117.19
Crystal system, space groupMonoclinic, P21/cMonoclinic, P21/cOrthorhombic, Fdd2
Temperature (K)293293293
a, b, c (Å)19.453 (2), 5.1589 (6), 8.180 (1)22.2081 (14), 5.1843 (9), 8.217 (4)15.4577 (12), 17.5074 (12), 10.9970 (7)
α, β, γ (°)90, 98.398 (3), 9090, 96.818 (3), 9090, 90, 90
V3)812.08 (17)939.4 (5)2976.1 (4)
Z2216
Radiation typeMo KαMo KαMo Kα
µ (mm1)0.080.070.07
Crystal size (mm)0.35 × 0.30 × 0.050.26 × 0.18 × 0.080.40 × 0.40 × 0.38
Data collection
DiffractometerBruker CCD
diffractometer
Bruker CCD
diffractometer
Siemens P4
diffractometer
Absorption correction
Tmin, Tmax
No. of measured, independent and
observed reflections
5982, 2017, 1051 [I > 3.00u(I)]6256, 2260, 1143 [I > 3.00u(I)]17546, 1323, 560 [I > 2.00u(I)]
Rint0.030.080.08
(sin θ/λ)max1)0.6680.6660.630
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.035, 0.090, 0.94 0.037, 0.090, 0.96 0.085, 0.226, 1.07
No. of reflections10511143560
No. of parameters10311356
No. of restraints???
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.24, 0.280.21, 0.200.39, 0.44

Computer programs: , Bruker SMART CCD, EXPRESS (Enraf-Nonius, 1993), Siemens XSCANS, SAINT, XSCANS, Xtal3.7, Siemens SHELXTL, model ring fit on i, H-bond chain along 21 axis, SIR92 (Altomare et al., 1994), SHELXS 86 (Sheldrick, 1986), Xtal CRYLSQ, CRYSTALS (Watkin et al. 2001), Xtal ORTEP, CAMERON (Watkin et al. 1996), Xtal BONDLA CIFIO.

Selected geometric parameters (Å, º) for (PZ) top
N1—C21.450 (2)C2—C31.512 (2)
N1—C3i1.4634 (18)
C2—N1—C3i110.0 (1)N1i—C3—C2108.61 (12)
N1—C2—C3109.05 (13)
Symmetry code: (i) x+1, y, z+1.
Selected geometric parameters (Å, º) for (MORFCL) top
O1—C21.430 (2)N4—C51.492 (2)
O1—C61.418 (2)N4—H10.87 (3)
C2—C31.505 (3)N4—H20.90 (3)
C3—N41.485 (2)C5—C61.506 (2)
C2—O1—C6109.71 (13)C3—N4—H2109.9 (16)
O1—C2—C3110.82 (15)C5—N4—H2110.4 (15)
C2—C3—N4110.15 (14)H1—N4—H2103 (2)
C3—N4—C5110.93 (12)N4—C5—C6109.95 (14)
C3—N4—H1113.5 (17)O1—C6—C5111.02 (15)
C5—N4—H1109.0 (17)
Selected geometric parameters (Å, º) for (MORPHI) top
N1—C21.481 (3)C3—O41.426 (3)
N1—C61.493 (3)O4—C51.416 (3)
C2—C31.510 (4)C5—C61.505 (4)
C2—N1—C6111.8 (2)C3—O4—C5109.7 (2)
N1—C2—C3109.8 (2)O4—C5—C6111.5 (2)
C2—C3—O4110.8 (2)N1—C6—C5109.4 (2)
Selected geometric parameters (Å, º) for (PDA8DO) top
N1—C21.4222 (17)C6—C71.506 (2)
C2—C31.3814 (18)C7—C81.520 (2)
C2—C4i1.386 (2)C8—C91.514 (2)
C3—C41.3825 (19)C9—C9ii1.523 (3)
O5—C61.4167 (17)
N1—C2—C3120.33 (13)O5—C6—C7109.32 (13)
N1—C2—C4i120.77 (13)C6—C7—C8112.72 (14)
C3—C2—C4i118.84 (12)C7—C8—C9113.07 (13)
C2—C3—C4120.35 (12)C8—C9—C9ii113.28 (18)
C2i—C4—C3120.81 (13)
Symmetry codes: (i) x+1/2, y+1/2, z+2; (ii) x+1, y, z+2.
Selected geometric parameters (Å, º) for (PDA10D) top
C1—C21.385 (2)C5—C61.526 (2)
C1—C3i1.389 (2)C6—C71.526 (2)
C2—C31.387 (2)C7—C81.528 (2)
C3—N41.4330 (19)C8—C91.516 (2)
C5—C5ii1.525 (3)C9—O101.4189 (18)
C2—C1—C3i120.18 (14)C5ii—C5—C6113.39 (17)
C1—C2—C3120.82 (14)C5—C6—C7113.32 (13)
C1i—C3—C2119.00 (13)C6—C7—C8113.01 (13)
C1i—C3—N4119.88 (14)C7—C8—C9112.35 (13)
C2—C3—N4121.07 (14)C8—C9—O10108.78 (13)
Symmetry codes: (i) x+1, y, z; (ii) x, y1, z.
Selected geometric parameters (Å, º) for (PDA12D) top
C1—C21.383 (2)C5—C61.520 (2)
C1—C3i1.387 (2)C6—C71.523 (2)
C2—C31.384 (2)C7—C81.527 (2)
C3—N41.429 (2)C8—C91.524 (2)
N4—H10.86 (3)C9—C101.507 (2)
N4—H20.86 (3)C10—O111.418 (2)
C5—C5ii1.525 (3)O11—H30.83 (3)
C2—C1—C3i120.48 (15)C5ii—C5—C6113.6 (2)
C1—C2—C3120.87 (15)C5—C6—C7113.48 (16)
C1i—C3—C2118.65 (14)C6—C7—C8113.42 (16)
C1i—C3—N4120.09 (15)C7—C8—C9112.84 (16)
C2—C3—N4121.21 (15)C8—C9—C10112.59 (16)
C3—N4—H1113.2 (14)C9—C10—O11109.32 (16)
C3—N4—H2110.1 (16)C10—O11—H3106.5 (16)
H1—N4—H2111 (2)
Symmetry codes: (i) x+1, y, z+1; (ii) x, y1, z+1.
Selected geometric parameters (Å, º) for (AMHXOL) top
O1—C21.421 (8)C5—C61.513 (9)
C2—C31.523 (9)C6—C71.515 (9)
C3—C41.512 (9)C7—N81.465 (8)
C4—C51.517 (9)
O1—C2—C3110.8 (5)C4—C5—C6114.7 (5)
C2—C3—C4113.1 (5)C5—C6—C7114.3 (5)
C3—C4—C5113.5 (5)C6—C7—N8115.7 (5)
 

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