Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270109048252/gg3219sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270109048252/gg3219Isup2.hkl |
CCDC reference: 763590
For related literature, see: Atkinson et al. (2002); Bishop et al. (2000); Boča et al. (1996); Brudíková & Breza (2004); Chippindale et al. (2009); Kožíšek et al. (1990); Liu et al. (2007); Majek et al. (2004); Wang et al. (1990); Zhao et al. (2006); Zheng et al. (2008).
Copper(I) dicyanamide (50 mg) (Wang et al., 1990) was dissolved in 1-methylpyrrolidin-2-one (6 ml) to form a dark-green solution. A 2 ml portion of this solution was transferred to a small sample vial, which was sealed inside a larger vial containing methanol (8 ml). No solid appeared after a period of 1 month. However, vapour diffusion over 18 months led to the growth of a single crystal of [Cu{N[C(NH)OCH3]2}2].2C5H9NO within the inner vial in the form of a dark-pink block of dimensions 0.2 × 0.2 × 5 mm. A fragment of the crystal was used for the diffraction experiment. Attempts have not so far been made to optimize the crystallization conditions. Heating the crystal of the title compound under nitrogen from room temperature to 350 K over 30 min led to complete loss of 1-methylpyrrolidin-2-one and formation of violet-red polycrystalline [Cu{N[C(NH)OCH3]2}2] (Boča et al., 1996), as confirmed by powder X-ray diffraction. During the desolvation reaction, bubbles were observed on the surface of the crystal.
All H atoms were located in difference Fourier maps. Their fractional coordinates were refined subject to bond-length restraints [C—H = 0.95 (1) Å, N—H = 0.85 (1) Å] with isotropic displacement parameters fixed at Uiso(H) = 1.2Ueq(C)and 1.2Ueq(N), respectively.
Data collection: Xcalibur (Oxford Diffraction, 2006); cell refinement: CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED (Oxford Diffraction, 2006); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: CAMERON (Watkin et al., 1996); software used to prepare material for publication: CRYSTALS (Betteridge et al., 2003).
[Cu(C4H8N3O2)2]·2C5H9NO | F(000) = 550 |
Mr = 522.08 | Dx = 1.453 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 8090 reflections |
a = 7.52863 (18) Å | θ = 2.3–32.9° |
b = 11.5650 (3) Å | µ = 0.97 mm−1 |
c = 14.0547 (3) Å | T = 150 K |
β = 102.833 (2)° | Block, pink |
V = 1193.15 (5) Å3 | 0.36 × 0.17 × 0.15 mm |
Z = 2 |
Oxford Diffraction Xcalibur diffractometer | 3244 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.013 |
ω/2θ scans | θmax = 32.9°, θmin = 2.3° |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006) | h = −6→10 |
Tmin = 0.82, Tmax = 0.87 | k = −7→17 |
8090 measured reflections | l = −21→20 |
3880 independent reflections |
Refinement on F | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.022 | Only H-atom coordinates refined |
wR(F2) = 0.025 | Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982)
[weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)]
where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 13.1 -5.57 11.7 Prince, E. (1982). Mathematical Techniques in Crystallography and Materials Science. New York: Springer-Verlag. Watkin, D. J. (1994). Acta Cryst. A50, 411–437. |
S = 1.04 | (Δ/σ)max = 0.001 |
3097 reflections | Δρmax = 0.33 e Å−3 |
196 parameters | Δρmin = −0.41 e Å−3 |
17 restraints |
[Cu(C4H8N3O2)2]·2C5H9NO | V = 1193.15 (5) Å3 |
Mr = 522.08 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.52863 (18) Å | µ = 0.97 mm−1 |
b = 11.5650 (3) Å | T = 150 K |
c = 14.0547 (3) Å | 0.36 × 0.17 × 0.15 mm |
β = 102.833 (2)° |
Oxford Diffraction Xcalibur diffractometer | 3880 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006) | 3244 reflections with I > 2σ(I) |
Tmin = 0.82, Tmax = 0.87 | Rint = 0.013 |
8090 measured reflections |
R[F2 > 2σ(F2)] = 0.022 | 17 restraints |
wR(F2) = 0.025 | Only H-atom coordinates refined |
S = 1.04 | Δρmax = 0.33 e Å−3 |
3097 reflections | Δρmin = −0.41 e Å−3 |
196 parameters |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.0000 | 0.5000 | 0.5000 | 0.0164 | |
N1 | −0.07897 (10) | 0.33988 (6) | 0.48426 (5) | 0.0218 | |
N2 | 0.05242 (10) | 0.26462 (6) | 0.64206 (5) | 0.0219 | |
N3 | 0.11767 (10) | 0.46531 (6) | 0.63448 (5) | 0.0220 | |
N4 | 0.45562 (10) | 0.74412 (6) | 0.86909 (5) | 0.0244 | |
O1 | −0.11707 (10) | 0.15338 (5) | 0.52146 (5) | 0.0265 | |
O2 | 0.22157 (10) | 0.36290 (6) | 0.77153 (5) | 0.0309 | |
O3 | 0.32620 (11) | 0.67872 (7) | 0.71593 (5) | 0.0369 | |
C1 | −0.04474 (10) | 0.25871 (6) | 0.55014 (5) | 0.0195 | |
C2 | 0.12526 (10) | 0.36510 (7) | 0.67728 (5) | 0.0206 | |
C3 | −0.08590 (14) | 0.06180 (7) | 0.59258 (7) | 0.0300 | |
C4 | 0.22943 (19) | 0.25484 (10) | 0.82308 (7) | 0.0403 | |
C5 | 0.36415 (12) | 0.75736 (8) | 0.77636 (6) | 0.0245 | |
C6 | 0.31810 (15) | 0.88354 (9) | 0.75882 (8) | 0.0358 | |
C7 | 0.38976 (14) | 0.94372 (8) | 0.85648 (9) | 0.0356 | |
C8 | 0.48593 (12) | 0.84988 (8) | 0.92629 (7) | 0.0275 | |
C9 | 0.52978 (15) | 0.63505 (9) | 0.90959 (8) | 0.0345 | |
H33 | −0.1424 | −0.0071 | 0.5640 | 0.0360* | |
H32 | 0.0417 | 0.0490 | 0.6142 | 0.0360* | |
H31 | −0.1280 (18) | 0.0820 (14) | 0.6486 (8) | 0.0360* | |
H41 | 0.298 (2) | 0.2693 (15) | 0.8869 (8) | 0.0484* | |
H42 | 0.292 (2) | 0.1995 (12) | 0.7934 (12) | 0.0484* | |
H43 | 0.1096 (15) | 0.2330 (16) | 0.8274 (13) | 0.0484* | |
H61 | 0.3723 (19) | 0.9112 (14) | 0.7090 (9) | 0.0429* | |
H62 | 0.1886 (12) | 0.8932 (15) | 0.7368 (11) | 0.0429* | |
H71 | 0.470 (2) | 1.0052 (11) | 0.8504 (14) | 0.0427* | |
H72 | 0.2914 (18) | 0.9748 (14) | 0.8806 (12) | 0.0427* | |
H81 | 0.6146 (12) | 0.8606 (13) | 0.9483 (10) | 0.0331* | |
H82 | 0.4320 (19) | 0.8416 (13) | 0.9813 (8) | 0.0331* | |
H93 | 0.486 (2) | 0.6185 (15) | 0.9668 (9) | 0.0414* | |
H92 | 0.6578 (12) | 0.6401 (14) | 0.9215 (11) | 0.0414* | |
H91 | 0.4812 (19) | 0.5757 (11) | 0.8655 (10) | 0.0414* | |
H11 | −0.1467 (15) | 0.3158 (12) | 0.4308 (7) | 0.0261* | |
H34 | 0.1756 (18) | 0.5170 (10) | 0.6728 (9) | 0.0263* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.01915 (6) | 0.01562 (6) | 0.01437 (6) | 0.00031 (5) | 0.00329 (4) | 0.00078 (4) |
N1 | 0.0290 (3) | 0.0187 (3) | 0.0162 (3) | −0.0021 (2) | 0.0016 (2) | 0.0000 (2) |
N2 | 0.0274 (3) | 0.0188 (3) | 0.0184 (3) | 0.0006 (2) | 0.0029 (2) | 0.0022 (2) |
N3 | 0.0275 (3) | 0.0187 (3) | 0.0175 (3) | −0.0021 (2) | 0.0003 (2) | 0.0007 (2) |
N4 | 0.0271 (3) | 0.0198 (3) | 0.0229 (3) | 0.0017 (2) | −0.0018 (2) | −0.0005 (2) |
O1 | 0.0379 (3) | 0.0170 (2) | 0.0229 (3) | −0.0036 (2) | 0.0034 (2) | 0.0002 (2) |
O2 | 0.0434 (3) | 0.0256 (3) | 0.0177 (2) | −0.0001 (3) | −0.0061 (2) | 0.0033 (2) |
O3 | 0.0467 (4) | 0.0334 (4) | 0.0257 (3) | −0.0102 (3) | −0.0028 (3) | −0.0041 (3) |
C1 | 0.0231 (3) | 0.0166 (3) | 0.0193 (3) | 0.0001 (2) | 0.0057 (2) | −0.0009 (2) |
C2 | 0.0229 (3) | 0.0214 (3) | 0.0164 (3) | 0.0021 (2) | 0.0021 (2) | 0.0010 (2) |
C3 | 0.0424 (5) | 0.0170 (3) | 0.0306 (4) | −0.0014 (3) | 0.0079 (3) | 0.0031 (3) |
C4 | 0.0589 (6) | 0.0319 (5) | 0.0234 (4) | 0.0018 (4) | −0.0052 (4) | 0.0107 (3) |
C5 | 0.0249 (3) | 0.0233 (4) | 0.0232 (3) | −0.0034 (3) | 0.0006 (3) | 0.0034 (3) |
C6 | 0.0393 (5) | 0.0269 (4) | 0.0389 (5) | 0.0005 (4) | 0.0038 (4) | 0.0133 (4) |
C7 | 0.0347 (4) | 0.0204 (4) | 0.0527 (6) | 0.0009 (3) | 0.0120 (4) | −0.0023 (4) |
C8 | 0.0264 (4) | 0.0267 (4) | 0.0294 (4) | −0.0052 (3) | 0.0060 (3) | −0.0070 (3) |
C9 | 0.0365 (4) | 0.0278 (4) | 0.0351 (4) | 0.0081 (3) | −0.0010 (4) | 0.0069 (3) |
Cu1—N3i | 1.9427 (7) | C3—H33 | 0.950 |
Cu1—N1i | 1.9424 (7) | C3—H32 | 0.953 |
Cu1—N1 | 1.9424 (7) | C3—H31 | 0.941 (8) |
Cu1—N3 | 1.9427 (7) | C4—H41 | 0.945 (9) |
N1—C1 | 1.3034 (10) | C4—H42 | 0.944 (9) |
N1—H11 | 0.855 (8) | C4—H43 | 0.952 (9) |
N2—C1 | 1.3375 (10) | C5—C6 | 1.5074 (13) |
N2—C2 | 1.3324 (10) | C6—C7 | 1.5267 (16) |
N3—C2 | 1.3012 (10) | C6—H61 | 0.941 (9) |
N3—H34 | 0.856 (8) | C6—H62 | 0.961 (8) |
N4—C5 | 1.3407 (11) | C7—C8 | 1.5327 (15) |
N4—C8 | 1.4536 (11) | C7—H71 | 0.950 (9) |
N4—C9 | 1.4441 (12) | C7—H72 | 0.951 (9) |
O1—C1 | 1.3585 (9) | C8—H81 | 0.957 (8) |
O1—C3 | 1.4393 (11) | C8—H82 | 0.955 (8) |
O2—C2 | 1.3618 (9) | C9—H93 | 0.952 (9) |
O2—C4 | 1.4391 (12) | C9—H92 | 0.943 (8) |
O3—C5 | 1.2339 (11) | C9—H91 | 0.943 (9) |
N3i—Cu1—N1i | 88.61 (3) | H41—C4—H42 | 108.6 (14) |
N3i—Cu1—N1 | 91.39 (3) | O2—C4—H43 | 109.2 (11) |
N1i—Cu1—N1 | 180 | H41—C4—H43 | 108.1 (14) |
N3i—Cu1—N3 | 180 | H42—C4—H43 | 114.8 (15) |
N1i—Cu1—N3 | 91.39 (3) | N4—C5—O3 | 125.12 (9) |
N1—Cu1—N3 | 88.61 (3) | N4—C5—C6 | 108.62 (8) |
Cu1—N1—C1 | 126.76 (6) | O3—C5—C6 | 126.25 (8) |
Cu1—N1—H11 | 121.2 (9) | C5—C6—C7 | 105.77 (8) |
C1—N1—H11 | 112.0 (9) | C5—C6—H61 | 109.2 (11) |
C1—N2—C2 | 119.67 (7) | C7—C6—H61 | 112.9 (10) |
Cu1—N3—C2 | 126.68 (6) | C5—C6—H62 | 110.2 (11) |
Cu1—N3—H34 | 121.8 (9) | C7—C6—H62 | 111.5 (10) |
C2—N3—H34 | 111.5 (9) | H61—C6—H62 | 107.3 (13) |
C5—N4—C8 | 115.16 (7) | C6—C7—C8 | 105.96 (7) |
C5—N4—C9 | 123.58 (8) | C6—C7—H71 | 111.5 (12) |
C8—N4—C9 | 121.17 (8) | C8—C7—H71 | 111.6 (11) |
C1—O1—C3 | 117.45 (7) | C6—C7—H72 | 110.2 (11) |
C2—O2—C4 | 117.35 (7) | C8—C7—H72 | 109.5 (11) |
O1—C1—N2 | 115.45 (7) | H71—C7—H72 | 108.1 (14) |
O1—C1—N1 | 115.60 (7) | C7—C8—N4 | 104.36 (7) |
N2—C1—N1 | 128.96 (7) | C7—C8—H81 | 114.5 (9) |
O2—C2—N2 | 115.56 (7) | N4—C8—H81 | 108.1 (9) |
O2—C2—N3 | 115.18 (7) | C7—C8—H82 | 111.3 (9) |
N2—C2—N3 | 129.26 (7) | N4—C8—H82 | 108.7 (9) |
O1—C3—H33 | 109.6 | H81—C8—H82 | 109.5 (12) |
O1—C3—H32 | 109.5 | N4—C9—H93 | 109.5 (10) |
H33—C3—H32 | 109.3 | N4—C9—H92 | 107.9 (10) |
O1—C3—H31 | 111.4 (10) | H93—C9—H92 | 113.0 (13) |
H33—C3—H31 | 111.1 | N4—C9—H91 | 108.5 (10) |
H32—C3—H31 | 105.9 | H93—C9—H91 | 104.6 (14) |
O2—C4—H41 | 106.1 (11) | H92—C9—H91 | 113.2 (13) |
O2—C4—H42 | 109.6 (11) |
Symmetry code: (i) −x, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H11···O3i | 0.86 (1) | 2.20 (1) | 3.0168 (14) | 159 (1) |
N3—H34···O3 | 0.86 (1) | 2.20 (1) | 3.0113 (14) | 158 (1) |
Symmetry code: (i) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C4H8N3O2)2]·2C5H9NO |
Mr | 522.08 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 150 |
a, b, c (Å) | 7.52863 (18), 11.5650 (3), 14.0547 (3) |
β (°) | 102.833 (2) |
V (Å3) | 1193.15 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.97 |
Crystal size (mm) | 0.36 × 0.17 × 0.15 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur diffractometer |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2006) |
Tmin, Tmax | 0.82, 0.87 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8090, 3880, 3244 |
Rint | 0.013 |
(sin θ/λ)max (Å−1) | 0.764 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.022, 0.025, 1.04 |
No. of reflections | 3097 |
No. of parameters | 196 |
No. of restraints | 17 |
H-atom treatment | Only H-atom coordinates refined |
Δρmax, Δρmin (e Å−3) | 0.33, −0.41 |
Computer programs: Xcalibur (Oxford Diffraction, 2006), CrysAlis RED (Oxford Diffraction, 2006), SIR92 (Altomare et al., 1994), CRYSTALS (Betteridge et al., 2003), CAMERON (Watkin et al., 1996).
Cu1—N1 | 1.9424 (7) | Cu1—N3 | 1.9427 (7) |
N1i—Cu1—N3 | 91.39 (3) | Cu1—N1—C1 | 126.76 (6) |
N1—Cu1—N3 | 88.61 (3) | Cu1—N3—C2 | 126.68 (6) |
Symmetry code: (i) −x, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H11···O3i | 0.856 (10) | 2.201 (10) | 3.0168 (14) | 159 (1) |
N3—H34···O3 | 0.856 (12) | 2.201 (12) | 3.0113 (14) | 158 (1) |
Symmetry code: (i) −x, −y+1, −z+1. |
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A number of copper(II) complexes of the bis(methoxycarbimido)amine ligand, HN[C(NH)OCH3]2 (HL), have previously been prepared by reacting CuII salts with sodium dicyanamide in methanolic solutions. The ligand is generated in situ by nucleophilic addition of the methanol to the dicyanamide anion and, depending on the reaction conditions, may occur in either the protonated or deprotonated form, i.e. as HL or L- (Atkinson et al., 2002) (see scheme).
Neutral HL ligands are found in [Cu{HN[C(NH)OCH3]2}2](ClO4)2.2X [X = CH3OH (Liu et al., 2007) and H2O (Zheng et al., 2008)] and [Cu{HN[C(NH)OCH3]2]Br2.2C2H5N3O2.2CH3OH.0.8CH3CN (C2H5N3O2 = biuret, Bishop et al., 2000). The anion, L-, occurs in the neutral monomeric complex, [Cu{N[C(NH)OCH3]2}2] (Kožíšek et al., 1990; Boča et al., 1996; Tong et al., 2003), and in the dimer, [Cu(µ-OCH3){N[C(NH)OCH3]2}2]2, in which two Cu(L)2 units are linked via methoxide bridges (Zhao et al., 2006). On heating the neutral monomeric complex with NH4PF6 in a CH3OH/CH3CN mixture, [Cu{N[C(NH)OCH3]2}{HN[C(NH)OCH3]2}]PF6.CH3CN, in which both neutral and anionic ligand species occur, is generated (Atkinson et al., 2002). Recently, attempts to explain the different conformations adopted by the neutral and anionic forms of the ligand in terms of their geometries and electronic structures have been made using ab initio molecular orbital (MO) calculations (Majek et al., 2004; Brudíková & Breza, 2004).
In this work, the structure of the title compound, [Cu{N[C(NH)OCH3]2}2].2C5H9NO (C5H9NO = 1-methylpyrrolidin-2-one), a solvate of the neutral complex, [Cu{N[C(NH)OCH3]2}2], is reported. The starting materials for the synthesis were copper(I) dicyanamide, CuN(CN)2, 1-methylpyrrolidin-2-one and methanol. Cu+ is oxidized to Cu2+ during the reaction. It has previously been reported that oxidation of the Cu+ in CuN(CN)2 occurs in aqueous ammonia/hydrazine, accompanied by partial hydration of dicyanamide to cyanourea, H2N—CO—NH—CN, to generate the layered copper(II) hydroxide, Cu2(OH)3[H2NC(O)NCN].2H2O (Chippindale et al., 2009).
In the title compound, copper(II) is coordinated to two {N[C(NH)OCH3]2}2 ligands to form a neutral complex containing two six-membered metallo-rings (Fig. 1). The CuII ion lies on an inversion centre, at special position 2a, coordinated by four N atoms in a square-planar array. The bond lengths and angles within the complex are similar to those observed previously in [Cu{N[C(NH)OCH3]2}2] (Boča et al., 1996). The (H)N—C bonds (N1–C1 and N3 – C2) and N2–C bonds (N2–C1 and N2–C2) have average lengths of 1.302 (1) and 1.335 (1) Å, respectively. These values, together with the planarity of the metallocycle, indicate a highly delocalized π-bonding system. The conformations adopted by the methyl groups at C3 and C4, which point away from N1 and N3 with torsion angles N1—C1—O1—C3 and N3—C2—O2—C4 of 178.7 (1) and 178.2 (1) ° respectively, agree with those predicted previously for the anionic form of the ligand from MO calculations (Majek et al., 2004; Brudíková & Breza, 2004) and database mining (Atkinson et al., 2002).
Associated with each copper complex are two 1-methylpyrrolidin-2-one molecules held in place by hydrogen-bonding interactions between N1 and N3 of the copper complex and O3 of the pyrrolidinone (average N—O3 distance, 3.01 Å) (Table 2). The associated units pack in flat sheets parallel to the (1 0 1) plane and these stack abab along the a axis (Fig. 2). There are no strong interactions between neighbouring units within or between the sheets.
On gentle heating in N2, the single crystal of [Cu{N[C(NH)OCH3]2}2].2C5H9NO loses all solvent with the formation of polycrystalline [Cu{N[C(NH)OCH3]2}2] (Boča et al., 1996). The packing of the copper complexes in this case reflects the fact that weak hydrogen-bonding interactions are formed between the amine NH groups and the O atoms of methoxy groups in neighbours.