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In the title compound, C18H27F3N5O3S+·Cl, the guanidine group forms N—H...Cl hydrogen bonds, with four N...Cl distances in the range 3.164 (3)–3.337 (4) Å. In the crystal packing, the cations are further linked by N—H...O and C—H...O inter­actions. The structure is compared with that of argatroban complexed with thrombin and is the subject of docking studies in the active site of thrombin.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270106047640/gg3050sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270106047640/gg3050Isup2.hkl
Contains datablock I

CCDC reference: 632940

Comment top

Thrombin is a key enzyme in the blood coagulation system and represents a main target in medicinal chemistry (Weitz, 2003). Recently, we became interested in designing thrombin inhibitors for the biocompatibilization of polymer materials (Salvagnini et al., 2005). Our strategy relies upon the covalent grafting of biologically active molecules, via a spacer arm, on the surface of polymer devices. In this way, we can selectively confer specific properties on the material surface, while the physico-chemical and mechanical properties of the bulk remain unchanged (Marchand-Brynaert, 1999). Graftable thrombin inhibitors are derived from L-arginine and have a piperazinyl amide moiety bearing a spacer arm at site 4 (X in the scheme) for surface grafting. The replacement of the classically used piperidine with a piperazine ring, in order to use the atom at position 4 as an anchor for various spacer arms, had to be validated. Thus, a small library of thrombin inhibitors with different groups at position 4 was synthesized. Of these, the title compound with a CH2 substituent, (I) (with a piperidine moiety), is presented here. Four other compounds, with O, N—H, N—Et and N—Ac substituents, will be published shortly (Salvagnini et al., 2006).

The elucidation of the structure of (I) (Fig. 1) and its interactions in crystal packing can help to determine its position and orientation when docked in the thrombin active site. Bond lengths and angles are as expected, e.g. the SO bond lengths in the sulfonamide group are similar to the expected value of 1.43 Å for C—SO2—N systems (Allen, 2002). The N atom of the amide bond, involved in the piperidine ring, is sp2, with bond angles close to 120° (total of 358°) [C13—N5—C18 = 126.9 (3), C13—N5—C14 = 118.3 (3) and C18—N5—C14 = 112.7 (3)°].

In compound (I), the guanidine group interacts with the Cl anions (Table 1) via strong donor–weak acceptor N—H···Cl interactions (Desiraju & Steiner, 1999) that can also be described as `chelated' (Giacovazzo et al., 1992). In the Cambridge Structural Database (CSD, Version?; Allen, 2002), 36 entries have such interactions (ISOSTAR; Bruno et al., 1997), but only a few possess the chelated geometry, where the Cl anion interacts with two N—H moieties, N—H···Cl bond distances in the range 2.2–2.8 Å. In the crystal packing, (N/C)—H···O interactions are present and link symmetry-related cations (Table 1). An intramolecular C—H···π(arene) interaction (C10—H10B···Cg2, where Cg2 is the centroid of the phenyl ring C2–C7; Table 1) and weaker C—H···O contacts constrain the conformations of the guanidine, piperidine and trifluoromethylphenyl moieties.

The amide and sulfonamide groups of (I) were modelled superimposed on argatroban (a reference thrombin inhibitor) co-crystallized with human thrombin (Fig. 2a) (Banner & Hadvary, 1991). The piperidine moiety of each compound fits well, in contrast with the other groups. Indeed, the guanidine function is oriented so as to form either an ionic interaction with Asp189 in thrombin or an N—H···Cl interaction in the crystal packing. Moreover, the sulfonamide group of aragtroban interacts with the backbone of Gly216, orienting the tetrahydroquinoline in a different way than the trifluorophenyl group of (I).

The structure of (I) was subjected to a docking study in the active site of human thrombin [Protein Data Bank (PDB; Berman et al., 2000) code 1DWC] using GOLD (Jones et al., 2001). The binding mode of (I) is similar to that of argatroban (r.m.s deviation = 0.28 Å) (Fig. 2b). The guanidyl functional group, which binds the S-pocket and interacts with Asp189, is in an extended conformation and also interacts with the CO bond of Gly219 and Ala190. The piperidine and trifluorophenyl groups occupy the P– and D– pockets, respectively. A weak O—H···F bond is observed between the CF3 group and Tyr60A of the D-pocket (Desiraju & Steiner, 1999). This type of interaction is not common, but eight entries in the PDB involve a CF3 group interacting with a tyrosine (ISOSTAR), with O···F distances in the range 2.9–3.4 Å.

In conclusion, the crystal structure of the thrombin inhibitor, (I), was determined in order to highlight its structural properties. Moreover, it has proved to be a useful starting point for thrombin docking studies.

Experimental top

The synthesis of (I) has been described previously (Salvagnini et al., 2005). Crystals were obtained by slow evaporation of an ethanol solution of (I), to produce colourless crystals suitable for X-ray analysis.

Refinement top

All H atoms were calculated and fixed in geometrically idealized positions using the SHELXL97 defaults (at 293 K) (Sheldrick, 1997), with N—H = 0.86 Å and C—H = 0.93–0.98 Å, and with Uiso(H) = 1.2Ueq(C,N). The CF3 group is disordered over two rotational occupancies with site-occupancy factors of 0.58 and 0.42.

The stereochemistry of (I) has already been determined (Salvagnini et al., 2005, 2006), and therefore no Friedel reflections were collected. The refined value of the Flack parameter (Flack, 1983) of 0.00 (3) with R = 0.046 confirmed the S configuration, whereas the inverted conformation (R configuration) gave a Flack parameter of 0.93 (2) for R = 0.059.

The docking studies were performed using the program GOLD (Jones et al., 2001), which is a genetic algorithm for protein–ligand docking with full ligand and partial protein flexibility. The active site was defined as all protein atoms within 15 Å of any ligand atom in the experimental protein–ligand complex (1DWC). A maximum of ten docking solutions were generated for each structure. The default software settings were used for the parameters controlling the genetic algorithm. The scoring function used to rank the dockings was GOLDSCORE and it is partly based on conformational and non-bonded contact information from the CSD.

Computing details top

Data collection: CAD-4 MACH3 (Nonius, 2000); cell refinement: CAD-4 MACH3; data reduction: HELENA (Spek, 1997); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: enCIFer (Allen et al., 2004).

Figures top
[Figure 1] Fig. 1. A view of (I), with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. Thin dashed lines indicate the hydrogen bonds. Heavy dashed lines indicate the disordered CF3 group (Which disorder component is shown?)
[Figure 2] Fig. 2. (a) The conformation of the crystal structure of (I). (b) The conformation after docking in thrombin. These conformations are superimposed on the cocrystallized structure of argatroban (A) in the active site of human thrombin.
{4(S)-(Piperidin-1-ylcarbonyl)-4-[3- (trifluoromethyl)benzenesulfonamido]butyl}guanidinium chloride top
Crystal data top
C18H27F3N5O3S+·ClF(000) = 1016
Mr = 485.96Dx = 1.395 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 23 reflections
a = 8.371 (1) Åθ = 17.7–31.2°
b = 9.351 (1) ŵ = 2.79 mm1
c = 29.554 (3) ÅT = 293 K
V = 2313.4 (4) Å3Prism, colourless
Z = 40.45 × 0.21 × 0.04 mm
Data collection top
Enraf–Nonius CAD-4
diffractometer
2579 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.000
Graphite monochromatorθmax = 75.0°, θmin = 3.0°
θ/2θ scansh = 010
Absorption correction: analytical
(de Meulenaer & Tompa, 1965)
k = 110
Tmin = 0.367, Tmax = 0.897l = 037
2740 measured reflections3 standard reflections every 200 reflections
2740 independent reflections intensity decay: 2%
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.132 w = 1/[σ2(Fo2) + (0.0927P)2 + 0.4728P]
where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2740 reflectionsΔρmax = 0.39 e Å3
289 parametersΔρmin = 0.40 e Å3
15 restraintsAbsolute structure: Flack (1983)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.00 (3)
Crystal data top
C18H27F3N5O3S+·ClV = 2313.4 (4) Å3
Mr = 485.96Z = 4
Orthorhombic, P212121Cu Kα radiation
a = 8.371 (1) ŵ = 2.79 mm1
b = 9.351 (1) ÅT = 293 K
c = 29.554 (3) Å0.45 × 0.21 × 0.04 mm
Data collection top
Enraf–Nonius CAD-4
diffractometer
2579 reflections with I > 2σ(I)
Absorption correction: analytical
(de Meulenaer & Tompa, 1965)
Rint = 0.000
Tmin = 0.367, Tmax = 0.8973 standard reflections every 200 reflections
2740 measured reflections intensity decay: 2%
2740 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.132Δρmax = 0.39 e Å3
S = 1.06Δρmin = 0.40 e Å3
2740 reflectionsAbsolute structure: Flack (1983)
289 parametersAbsolute structure parameter: 0.00 (3)
15 restraints
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
S10.39669 (13)1.09592 (11)0.12816 (3)0.0602 (3)
O10.3543 (5)1.1662 (4)0.08651 (11)0.0804 (10)
O20.5278 (5)1.1435 (5)0.15489 (14)0.0905 (12)
O30.0142 (4)1.2935 (2)0.17744 (8)0.0564 (7)
N10.2435 (4)1.0976 (3)0.16049 (9)0.0457 (6)
H10.25641.11400.18890.055*
N20.0874 (4)0.5785 (3)0.20864 (10)0.0466 (6)
H20.03260.50850.19790.056*
N30.3201 (4)0.6491 (3)0.24318 (12)0.0600 (8)
H3A0.28210.73370.24690.072*
H3B0.41480.62910.25250.072*
N40.2924 (5)0.4194 (3)0.21811 (14)0.0652 (9)
H4A0.38670.39950.22780.078*
H4B0.23600.35450.20510.078*
N50.1210 (4)1.2419 (3)0.11389 (10)0.0488 (6)
C10.3239 (9)0.6488 (6)0.0252 (2)0.0982 (19)
F10.312 (2)0.7409 (19)0.0085 (6)0.171 (6)0.42
F20.2026 (17)0.5646 (13)0.0264 (8)0.139 (3)0.42
F30.445 (2)0.5610 (18)0.0078 (5)0.163 (5)0.42
F1'0.1971 (15)0.7198 (14)0.0063 (4)0.171 (6)0.58
F2'0.2730 (13)0.5094 (9)0.0290 (5)0.139 (3)0.58
F3'0.4308 (17)0.6423 (14)0.0090 (3)0.163 (5)0.58
C20.3826 (7)0.7103 (5)0.06713 (16)0.0725 (12)
C30.3705 (6)0.8581 (5)0.07559 (14)0.0615 (10)
H30.32140.91800.05470.074*
C40.4318 (5)0.9127 (5)0.11504 (13)0.0596 (10)
C50.5058 (7)0.8251 (7)0.14616 (17)0.0795 (15)
H50.54960.86330.17250.095*
C60.5143 (8)0.6794 (7)0.1378 (2)0.0941 (19)
H60.56280.61940.15880.113*
C70.4519 (8)0.6236 (6)0.0989 (2)0.0914 (18)
H70.45650.52540.09390.110*
C80.0821 (4)1.0722 (3)0.14327 (10)0.0404 (7)
H80.08731.03760.11200.048*
C90.0055 (4)0.9629 (3)0.17287 (11)0.0434 (7)
H9A0.00360.99540.20400.052*
H9B0.11630.95790.16340.052*
C100.0673 (5)0.8130 (3)0.17050 (11)0.0462 (8)
H10A0.03700.76830.14220.055*
H10B0.18290.82060.17110.055*
C110.0127 (4)0.7199 (3)0.20947 (12)0.0447 (7)
H11A0.03860.76690.23780.054*
H11B0.10240.70900.20810.054*
C120.2337 (4)0.5508 (3)0.22332 (12)0.0455 (7)
C130.0107 (4)1.2147 (3)0.14510 (10)0.0417 (7)
C140.2066 (5)1.3805 (4)0.11595 (13)0.0580 (9)
H14A0.19671.42150.14600.070*
H14B0.31911.36640.10950.070*
C150.1340 (6)1.4801 (4)0.08127 (15)0.0683 (11)
H15A0.02391.50040.08930.082*
H15B0.19231.56980.08100.082*
C160.1398 (9)1.4127 (6)0.03440 (16)0.0881 (16)
H16A0.25001.40800.02440.106*
H16B0.08171.47290.01330.106*
C170.0691 (8)1.2641 (6)0.03361 (14)0.0841 (15)
H17A0.04561.27020.03780.101*
H17B0.08881.22070.00430.101*
C180.1414 (6)1.1697 (5)0.07085 (14)0.0664 (11)
H18A0.25401.15400.06500.080*
H18B0.08811.07760.07150.080*
Cl10.67475 (10)0.49136 (9)0.24053 (3)0.0492 (2)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S10.0606 (5)0.0570 (5)0.0629 (5)0.0121 (5)0.0108 (4)0.0115 (4)
O10.107 (3)0.0658 (18)0.0685 (17)0.0053 (19)0.0214 (19)0.0261 (15)
O20.0653 (19)0.106 (3)0.100 (3)0.033 (2)0.0090 (19)0.001 (2)
O30.0822 (18)0.0317 (11)0.0552 (12)0.0069 (12)0.0128 (13)0.0098 (10)
N10.0527 (15)0.0385 (13)0.0461 (13)0.0020 (13)0.0006 (12)0.0022 (11)
N20.0498 (15)0.0236 (11)0.0662 (16)0.0025 (12)0.0060 (13)0.0043 (11)
N30.0561 (17)0.0348 (14)0.089 (2)0.0009 (13)0.0181 (18)0.0012 (15)
N40.0625 (19)0.0296 (13)0.104 (2)0.0034 (14)0.0162 (19)0.0030 (16)
N50.0619 (17)0.0338 (12)0.0508 (14)0.0074 (13)0.0054 (13)0.0022 (11)
C10.133 (5)0.062 (3)0.100 (4)0.009 (4)0.005 (4)0.009 (3)
F10.212 (13)0.136 (6)0.164 (9)0.061 (10)0.099 (10)0.065 (6)
F20.141 (8)0.084 (6)0.191 (5)0.016 (5)0.007 (8)0.031 (7)
F30.199 (7)0.193 (14)0.097 (7)0.053 (10)0.035 (7)0.050 (7)
F1'0.212 (13)0.136 (6)0.164 (9)0.061 (10)0.099 (10)0.065 (6)
F2'0.141 (8)0.084 (6)0.191 (5)0.016 (5)0.007 (8)0.031 (7)
F3'0.199 (7)0.193 (14)0.097 (7)0.053 (10)0.035 (7)0.050 (7)
C20.078 (3)0.059 (2)0.080 (3)0.015 (2)0.016 (2)0.002 (2)
C30.066 (2)0.060 (2)0.059 (2)0.010 (2)0.0123 (18)0.0122 (18)
C40.056 (2)0.063 (2)0.059 (2)0.0114 (19)0.0183 (17)0.0144 (18)
C50.071 (3)0.103 (4)0.065 (2)0.035 (3)0.011 (2)0.011 (2)
C60.097 (4)0.098 (4)0.088 (3)0.056 (4)0.019 (3)0.025 (3)
C70.105 (4)0.071 (3)0.098 (4)0.042 (3)0.029 (3)0.012 (3)
C80.0503 (17)0.0272 (14)0.0435 (14)0.0012 (13)0.0017 (13)0.0007 (11)
C90.0471 (16)0.0268 (13)0.0564 (17)0.0007 (13)0.0023 (14)0.0059 (12)
C100.060 (2)0.0258 (13)0.0529 (17)0.0022 (14)0.0012 (15)0.0011 (12)
C110.0450 (16)0.0286 (14)0.0606 (17)0.0011 (13)0.0029 (14)0.0050 (14)
C120.0530 (18)0.0287 (14)0.0550 (16)0.0007 (14)0.0020 (15)0.0059 (13)
C130.0553 (17)0.0266 (13)0.0431 (14)0.0007 (14)0.0005 (14)0.0024 (11)
C140.063 (2)0.0435 (18)0.067 (2)0.0149 (18)0.0030 (18)0.0110 (16)
C150.080 (3)0.048 (2)0.077 (2)0.004 (2)0.001 (2)0.0171 (19)
C160.122 (5)0.078 (3)0.064 (2)0.006 (3)0.011 (3)0.026 (2)
C170.112 (4)0.089 (3)0.051 (2)0.005 (3)0.012 (2)0.005 (2)
C180.084 (3)0.052 (2)0.063 (2)0.005 (2)0.029 (2)0.0061 (18)
Cl10.0538 (4)0.0415 (4)0.0522 (4)0.0021 (3)0.0081 (3)0.0037 (3)
Geometric parameters (Å, º) top
S1—O11.440 (3)C5—C61.387 (9)
S1—O21.424 (4)C5—H50.9300
S1—N11.599 (3)C6—C71.366 (9)
S1—C41.781 (4)C6—H60.9300
O3—C131.225 (4)C7—H70.9300
N1—C81.463 (4)C8—C91.532 (4)
N1—H10.8600C8—C131.543 (4)
N2—C121.325 (5)C8—H80.9800
N2—C111.463 (4)C9—C101.530 (4)
N2—H20.8600C9—H9A0.9700
N3—C121.309 (5)C9—H9B0.9700
N3—H3A0.8600C10—C111.514 (4)
N3—H3B0.8600C10—H10A0.9700
N4—C121.332 (4)C10—H10B0.9700
N4—H4A0.8600C11—H11A0.9700
N4—H4B0.8600C11—H11B0.9700
N5—C131.330 (4)C14—C151.513 (5)
N5—C181.450 (5)C14—H14A0.9700
N5—C141.482 (4)C14—H14B0.9700
C1—F21.285 (14)C15—C161.523 (7)
C1—F11.318 (16)C15—H15A0.9700
C1—F3'1.352 (11)C15—H15B0.9700
C1—F1'1.370 (11)C16—C171.510 (8)
C1—F2'1.377 (10)C16—H16A0.9700
C1—F31.402 (15)C16—H16B0.9700
C1—C21.453 (8)C17—C181.535 (7)
C2—C71.369 (7)C17—H17A0.9700
C2—C31.408 (6)C17—H17B0.9700
C3—C41.372 (6)C18—H18A0.9700
C3—H30.9300C18—H18B0.9700
C4—C51.378 (6)
O2—S1—O1121.4 (2)C13—C8—H8109.9
O2—S1—N1106.48 (19)C10—C9—C8113.2 (3)
O1—S1—N1108.0 (2)C10—C9—H9A108.9
O2—S1—C4107.1 (3)C8—C9—H9A108.9
O1—S1—C4107.1 (2)C10—C9—H9B108.9
N1—S1—C4105.78 (17)C8—C9—H9B108.9
C8—N1—S1122.1 (2)H9A—C9—H9B107.8
C8—N1—H1119.0C11—C10—C9111.8 (3)
S1—N1—H1119.0C11—C10—H10A109.3
C12—N2—C11124.5 (3)C9—C10—H10A109.3
C12—N2—H2117.7C11—C10—H10B109.3
C11—N2—H2117.7C9—C10—H10B109.3
C12—N3—H3A120.0H10A—C10—H10B107.9
C12—N3—H3B120.0N2—C11—C10112.2 (3)
H3A—N3—H3B120.0N2—C11—H11A109.2
C12—N4—H4A120.0C10—C11—H11A109.2
C12—N4—H4B120.0N2—C11—H11B109.2
H4A—N4—H4B120.0C10—C11—H11B109.2
C13—N5—C18126.9 (3)H11A—C11—H11B107.9
C13—N5—C14118.3 (3)N3—C12—N2121.3 (3)
C18—N5—C14112.7 (3)N3—C12—N4119.7 (3)
F2—C1—F1111.3 (13)N2—C12—N4118.9 (3)
F3'—C1—F1'103.4 (9)O3—C13—N5122.9 (3)
F3'—C1—F2'102.9 (9)O3—C13—C8117.5 (3)
F1'—C1—F2'104.6 (10)N5—C13—C8119.4 (3)
F2—C1—F3102.8 (10)N5—C14—C15108.4 (3)
F1—C1—F399.2 (10)N5—C14—H14A110.0
F2—C1—C2119.1 (11)C15—C14—H14A110.0
F1—C1—C2114.2 (9)N5—C14—H14B110.0
F3'—C1—C2115.6 (8)C15—C14—H14B110.0
F1'—C1—C2114.7 (7)H14A—C14—H14B108.4
F2'—C1—C2114.2 (8)C14—C15—C16110.4 (4)
F3—C1—C2107.4 (9)C14—C15—H15A109.6
C7—C2—C3119.3 (5)C16—C15—H15A109.6
C7—C2—C1119.6 (5)C14—C15—H15B109.6
C3—C2—C1121.0 (5)C16—C15—H15B109.6
C4—C3—C2119.3 (4)H15A—C15—H15B108.1
C4—C3—H3120.4C17—C16—C15112.5 (4)
C2—C3—H3120.4C17—C16—H16A109.1
C3—C4—C5120.9 (5)C15—C16—H16A109.1
C3—C4—S1118.8 (3)C17—C16—H16B109.1
C5—C4—S1120.0 (4)C15—C16—H16B109.1
C4—C5—C6119.2 (6)H16A—C16—H16B107.8
C4—C5—H5120.4C16—C17—C18111.3 (5)
C6—C5—H5120.4C16—C17—H17A109.4
C7—C6—C5120.4 (5)C18—C17—H17A109.4
C7—C6—H6119.8C16—C17—H17B109.4
C5—C6—H6119.8C18—C17—H17B109.4
C6—C7—C2120.8 (5)H17A—C17—H17B108.0
C6—C7—H7119.6N5—C18—C17108.4 (3)
C2—C7—H7119.6N5—C18—H18A110.0
N1—C8—C9110.6 (3)C17—C18—H18A110.0
N1—C8—C13108.2 (2)N5—C18—H18B110.0
C9—C8—C13108.4 (3)C17—C18—H18B110.0
N1—C8—H8109.9H18A—C18—H18B108.4
C9—C8—H8109.9
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···Cl1i0.862.453.164 (3)141
N2—H2···O3ii0.862.112.886 (4)151
N3—H3A···Cl1i0.862.463.237 (3)150
N3—H3B···Cl10.862.553.316 (3)148
N4—H4A···Cl10.862.593.337 (4)146
N4—H4B···O3ii0.862.112.873 (5)148
C10—H10B···Cg20.972.933.688 (5)136
C11—H11A···O3iii0.972.563.420 (4)148
Symmetry codes: (i) x+1, y+1/2, z+1/2; (ii) x, y1, z; (iii) x, y1/2, z+1/2.

Experimental details

Crystal data
Chemical formulaC18H27F3N5O3S+·Cl
Mr485.96
Crystal system, space groupOrthorhombic, P212121
Temperature (K)293
a, b, c (Å)8.371 (1), 9.351 (1), 29.554 (3)
V3)2313.4 (4)
Z4
Radiation typeCu Kα
µ (mm1)2.79
Crystal size (mm)0.45 × 0.21 × 0.04
Data collection
DiffractometerEnraf–Nonius CAD-4
diffractometer
Absorption correctionAnalytical
(de Meulenaer & Tompa, 1965)
Tmin, Tmax0.367, 0.897
No. of measured, independent and
observed [I > 2σ(I)] reflections
2740, 2740, 2579
Rint0.000
(sin θ/λ)max1)0.626
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.046, 0.132, 1.06
No. of reflections2740
No. of parameters289
No. of restraints15
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.39, 0.40
Absolute structureFlack (1983)
Absolute structure parameter0.00 (3)

Computer programs: CAD-4 MACH3 (Nonius, 2000), CAD-4 MACH3, HELENA (Spek, 1997), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), enCIFer (Allen et al., 2004).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···Cl1i0.862.453.164 (3)141
N2—H2···O3ii0.862.112.886 (4)151
N3—H3A···Cl1i0.862.463.237 (3)150
N3—H3B···Cl10.862.553.316 (3)148
N4—H4A···Cl10.862.593.337 (4)146
N4—H4B···O3ii0.862.112.873 (5)148
C10—H10B···Cg20.972.933.688 (5)136
C11—H11A···O3iii0.972.563.420 (4)148
Symmetry codes: (i) x+1, y+1/2, z+1/2; (ii) x, y1, z; (iii) x, y1/2, z+1/2.
 

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