Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270107051293/gd3152sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270107051293/gd3152Isup2.hkl |
CCDC reference: 672398
For related literature, see: Aakeröy et al. (1998); Bernasek (1957); Chaudhuri (2003); Milios et al. (2006); Orama & Saarinen (1996); Pearse, Raithby & Lewis (1989); Pearse, Raithby, Hay & Lewis (1989); Werner et al. (1996).
The ligand was prepared according to the literature method (Bernasek, 1957). Compound (I) was prepared in the dark by slow evaporation of an acetonitrile solution (10 ml) containing AgNO3 (17.0 mg, 0.1 mmol) and pyaoxH2 (13.7 mg, 0.1 mmol). After 3 d, colourless crystals were obtained (yield 60%).
H atoms were positioned geometrically and allowed for as riding atoms (C—H = 0.93 Å, N—H = 0.86 Å and O—H = 0.82 Å, with Uiso(H) = 1.2Ueq(C,N) or 1.5Ueq(O)]. Atoms O2 and O3 of the nitrate anion are disordered; the occupancies of the two sets of atom sites were initially refined and then fixed at the refined values 0.62 and 0.38. Constraints were applied to keep the NO3 atoms in each orientation coplanar.
Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: XP in SHELXTL (Sheldrick, 1998); software used to prepare material for publication: SHELXTL (Sheldrick, 1998).
[Ag(NO3)(C6H7N3O)] | F(000) = 1200 |
Mr = 307.03 | Dx = 2.114 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 6244 reflections |
a = 15.0911 (14) Å | θ = 2.7–27.0° |
b = 8.8890 (8) Å | µ = 2.09 mm−1 |
c = 16.0727 (15) Å | T = 293 K |
β = 116.536 (2)° | Platelet, colorless |
V = 1928.9 (3) Å3 | 0.25 × 0.20 × 0.12 mm |
Z = 8 |
Bruker SMART APEX CCD area-detector diffractometer | 2110 independent reflections |
Radiation source: fine-focus sealed tube | 1777 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
Detector resolution: 0.68 pixels mm-1 | θmax = 27.0°, θmin = 2.7° |
ϕ and ω scans | h = −19→19 |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | k = −9→11 |
Tmin = 0.623, Tmax = 0.788 | l = −20→17 |
6244 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.065 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.001P)2 + 6.2P] where P = (Fo2 + 2Fc2)/3 |
2110 reflections | (Δ/σ)max = 0.003 |
155 parameters | Δρmax = 1.08 e Å−3 |
10 restraints | Δρmin = −0.47 e Å−3 |
[Ag(NO3)(C6H7N3O)] | V = 1928.9 (3) Å3 |
Mr = 307.03 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 15.0911 (14) Å | µ = 2.09 mm−1 |
b = 8.8890 (8) Å | T = 293 K |
c = 16.0727 (15) Å | 0.25 × 0.20 × 0.12 mm |
β = 116.536 (2)° |
Bruker SMART APEX CCD area-detector diffractometer | 2110 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 1777 reflections with I > 2σ(I) |
Tmin = 0.623, Tmax = 0.788 | Rint = 0.022 |
6244 measured reflections |
R[F2 > 2σ(F2)] = 0.032 | 10 restraints |
wR(F2) = 0.065 | H-atom parameters constrained |
S = 1.03 | Δρmax = 1.08 e Å−3 |
2110 reflections | Δρmin = −0.47 e Å−3 |
155 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The oxygen atoms O(2) and O(3) of nitrate anions experience serious positional disorder, and a split model has been used. The site occupancies of two sets of split atoms have been first refined, and afterwards fixed. Constraints have been applied to keep the NO3 atoms of each orientation planar. The restraints involves the disorder of the nitrate anion since O2 and O3 were split. The ten restraints in the N—O bond distances (1.23 Å) and O···O separations (2.13 Å) of the nitrate anion were used. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Ag1 | 0.594132 (12) | 0.41694 (2) | 0.248063 (12) | 0.05581 (5) | |
O1 | 0.63654 (13) | 0.6739 (2) | 0.21900 (14) | 0.0801 (6) | |
O2 | 0.73516 (19) | 0.8439 (4) | 0.2125 (2) | 0.0913 (11) | 0.62 |
O3 | 0.7492 (2) | 0.7578 (4) | 0.34127 (17) | 0.0756 (10) | 0.62 |
O2' | 0.7508 (3) | 0.7598 (7) | 0.2039 (3) | 0.0797 (17) | 0.38 |
O3' | 0.7414 (7) | 0.8243 (7) | 0.3282 (4) | 0.160 (4) | 0.38 |
O4 | 0.63909 (13) | 0.64135 (17) | 0.42184 (12) | 0.0689 (5) | |
H4A | 0.6711 | 0.6760 | 0.3964 | 0.103* | |
N1 | 0.70917 (12) | 0.7554 (2) | 0.25556 (12) | 0.0558 (5) | |
N2 | 0.60729 (13) | 0.49417 (19) | 0.38838 (12) | 0.0515 (5) | |
N3 | 0.63574 (16) | 0.4589 (2) | 0.54136 (14) | 0.0700 (7) | |
H3A | 0.6581 | 0.5487 | 0.5573 | 0.084* | |
H3B | 0.6327 | 0.3986 | 0.5818 | 0.084* | |
N4 | 0.48737 (12) | 0.2307 (2) | 0.35481 (12) | 0.0500 (5) | |
C1 | 0.60598 (14) | 0.4134 (2) | 0.45445 (14) | 0.0468 (5) | |
C2 | 0.57274 (13) | 0.2543 (2) | 0.43098 (13) | 0.0452 (5) | |
C3 | 0.62987 (16) | 0.1385 (3) | 0.48508 (16) | 0.0570 (7) | |
H3 | 0.6885 | 0.1588 | 0.5379 | 0.068* | |
C4 | 0.59952 (18) | −0.0076 (3) | 0.46035 (18) | 0.0652 (8) | |
H4B | 0.6375 | −0.0875 | 0.4958 | 0.078* | |
C5 | 0.51281 (18) | −0.0330 (3) | 0.38300 (18) | 0.0658 (8) | |
H5 | 0.4906 | −0.1307 | 0.3646 | 0.079* | |
C6 | 0.45888 (17) | 0.0874 (3) | 0.33281 (18) | 0.0618 (7) | |
H6 | 0.3993 | 0.0688 | 0.2807 | 0.074* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ag1 | 0.05009 (7) | 0.05369 (10) | 0.05920 (9) | −0.00540 (8) | 0.02043 (6) | −0.00449 (8) |
O1 | 0.0689 (9) | 0.0584 (10) | 0.0964 (12) | −0.0178 (8) | 0.0221 (9) | 0.0136 (9) |
O2 | 0.0511 (13) | 0.103 (2) | 0.105 (2) | −0.0069 (15) | 0.0208 (13) | 0.0583 (16) |
O3 | 0.0965 (17) | 0.0725 (18) | 0.0516 (14) | −0.0257 (16) | 0.0274 (13) | −0.0160 (13) |
O2' | 0.052 (2) | 0.121 (4) | 0.059 (2) | −0.002 (3) | 0.0198 (18) | 0.037 (3) |
O3' | 0.169 (7) | 0.111 (5) | 0.147 (6) | −0.008 (5) | 0.023 (5) | −0.087 (4) |
O4 | 0.0955 (10) | 0.0391 (8) | 0.0785 (10) | −0.0145 (8) | 0.0446 (8) | −0.0114 (7) |
N1 | 0.0474 (8) | 0.0505 (10) | 0.0642 (10) | −0.0037 (8) | 0.0200 (7) | 0.0071 (9) |
N2 | 0.0631 (9) | 0.0314 (8) | 0.0600 (9) | −0.0047 (8) | 0.0275 (7) | −0.0061 (7) |
N3 | 0.1002 (13) | 0.0562 (11) | 0.0522 (10) | −0.0187 (11) | 0.0326 (9) | −0.0117 (8) |
N4 | 0.0488 (8) | 0.0426 (9) | 0.0541 (9) | −0.0053 (8) | 0.0190 (7) | 0.0006 (7) |
C1 | 0.0455 (8) | 0.0408 (10) | 0.0512 (10) | 0.0011 (9) | 0.0191 (7) | −0.0010 (9) |
C2 | 0.0486 (8) | 0.0429 (10) | 0.0471 (9) | −0.0013 (9) | 0.0239 (7) | −0.0010 (8) |
C3 | 0.0568 (11) | 0.0498 (12) | 0.0549 (12) | 0.0012 (10) | 0.0165 (10) | 0.0018 (10) |
C4 | 0.0731 (13) | 0.0460 (12) | 0.0711 (14) | 0.0061 (11) | 0.0273 (11) | 0.0083 (11) |
C5 | 0.0755 (13) | 0.0413 (12) | 0.0804 (15) | −0.0109 (11) | 0.0347 (11) | −0.0044 (11) |
C6 | 0.0571 (11) | 0.0486 (12) | 0.0708 (14) | −0.0131 (11) | 0.0207 (10) | −0.0054 (11) |
Ag1—N4i | 2.2741 (17) | N2—C1 | 1.289 (3) |
Ag1—N2 | 2.280 (2) | N3—C1 | 1.325 (3) |
Ag1—O2ii | 2.450 (3) | N3—H3A | 0.8600 |
Ag1—O1 | 2.4726 (18) | N3—H3B | 0.8600 |
Ag1—O2'ii | 2.531 (5) | N4—C2 | 1.339 (2) |
Ag1—Ag1i | 2.8695 (5) | N4—C6 | 1.340 (3) |
O1—N1 | 1.223 (2) | C1—C2 | 1.492 (3) |
O2—N1 | 1.223 (4) | C2—C3 | 1.374 (3) |
O2—Ag1iii | 2.450 (3) | C3—C4 | 1.375 (3) |
O3—N1 | 1.233 (3) | C3—H3 | 0.9300 |
O2'—N1 | 1.246 (5) | C4—C5 | 1.362 (3) |
O2'—Ag1iii | 2.531 (5) | C4—H4B | 0.9300 |
O3'—N1 | 1.211 (5) | C5—C6 | 1.368 (3) |
O4—N2 | 1.414 (2) | C5—H5 | 0.9300 |
O4—H4A | 0.8200 | C6—H6 | 0.9300 |
N4i—Ag1—N2 | 135.92 (7) | C1—N3—H3A | 120.0 |
N4i—Ag1—O2ii | 99.20 (8) | C1—N3—H3B | 120.0 |
N2—Ag1—O2ii | 101.94 (9) | H3A—N3—H3B | 120.0 |
N4i—Ag1—O1 | 129.56 (7) | C2—N4—C6 | 117.05 (18) |
N2—Ag1—O1 | 89.61 (7) | C2—N4—Ag1i | 122.50 (14) |
O2ii—Ag1—O1 | 87.87 (9) | C6—N4—Ag1i | 119.64 (13) |
N4i—Ag1—O2'ii | 86.89 (12) | N2—C1—N3 | 125.2 (2) |
N2—Ag1—O2'ii | 101.80 (10) | N2—C1—C2 | 116.53 (19) |
O1—Ag1—O2'ii | 106.59 (14) | N3—C1—C2 | 118.2 (2) |
O2ii—Ag1—Ag1i | 158.63 (9) | N4—C2—C3 | 122.42 (19) |
O2'ii—Ag1—Ag1i | 141.50 (13) | N4—C2—C1 | 117.23 (17) |
N1—O1—Ag1 | 135.09 (14) | C3—C2—C1 | 120.33 (17) |
N1—O2—Ag1iii | 126.18 (18) | C2—C3—C4 | 119.37 (19) |
N1—O2'—Ag1iii | 119.2 (3) | C2—C3—H3 | 120.3 |
N2—O4—H4A | 109.5 | C4—C3—H3 | 120.3 |
O3'—N1—O1 | 130.6 (5) | C5—C4—C3 | 118.7 (2) |
O1—N1—O2 | 123.7 (2) | C5—C4—H4B | 120.6 |
O1—N1—O3 | 115.7 (2) | C3—C4—H4B | 120.6 |
O2—N1—O3 | 120.1 (2) | C4—C5—C6 | 119.0 (2) |
O3'—N1—O2' | 121.4 (6) | C4—C5—H5 | 120.5 |
O1—N1—O2' | 108.0 (3) | C6—C5—H5 | 120.5 |
C1—N2—O4 | 109.22 (18) | N4—C6—C5 | 123.5 (2) |
C1—N2—Ag1 | 128.36 (14) | N4—C6—H6 | 118.3 |
O4—N2—Ag1 | 121.30 (14) | C5—C6—H6 | 118.3 |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x+3/2, y−1/2, −z+1/2; (iii) −x+3/2, y+1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4A···O3 | 0.82 | 1.91 | 2.726 (4) | 178 |
O4—H4A···O3′ | 0.82 | 2.26 | 3.061 (10) | 166 |
N3—H3A···O3iv | 0.86 | 2.35 | 3.161 (3) | 157 |
N3—H3B···O1v | 0.86 | 2.27 | 3.085 (3) | 158 |
C3—H3···O2v | 0.93 | 2.57 | 3.274 (4) | 133 |
C3—H3···O2′v | 0.93 | 2.51 | 3.284 (5) | 141 |
Symmetry codes: (iv) −x+3/2, −y+3/2, −z+1; (v) x, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Ag(NO3)(C6H7N3O)] |
Mr | 307.03 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 15.0911 (14), 8.8890 (8), 16.0727 (15) |
β (°) | 116.536 (2) |
V (Å3) | 1928.9 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 2.09 |
Crystal size (mm) | 0.25 × 0.20 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.623, 0.788 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6244, 2110, 1777 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.065, 1.03 |
No. of reflections | 2110 |
No. of parameters | 155 |
No. of restraints | 10 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.08, −0.47 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), XP in SHELXTL (Sheldrick, 1998), SHELXTL (Sheldrick, 1998).
Ag1—N4i | 2.2741 (17) | O2—Ag1iii | 2.450 (3) |
Ag1—N2 | 2.280 (2) | O3—N1 | 1.233 (3) |
Ag1—O2ii | 2.450 (3) | O2'—N1 | 1.246 (5) |
Ag1—O1 | 2.4726 (18) | O3'—N1 | 1.211 (5) |
Ag1—O2'ii | 2.531 (5) | O4—N2 | 1.414 (2) |
Ag1—Ag1i | 2.8695 (5) | N2—C1 | 1.289 (3) |
O1—N1 | 1.223 (2) | N3—C1 | 1.325 (3) |
O2—N1 | 1.223 (4) | ||
N4i—Ag1—N2 | 135.92 (7) | O2ii—Ag1—O1 | 87.87 (9) |
N4i—Ag1—O2ii | 99.20 (8) | O2ii—Ag1—Ag1i | 158.63 (9) |
N2—Ag1—O2ii | 101.94 (9) | N1—O1—Ag1 | 135.09 (14) |
N4i—Ag1—O1 | 129.56 (7) | N1—O2—Ag1iii | 126.18 (18) |
N2—Ag1—O1 | 89.61 (7) | O4—N2—Ag1 | 121.30 (14) |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x+3/2, y−1/2, −z+1/2; (iii) −x+3/2, y+1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4A···O3 | 0.82 | 1.91 | 2.726 (4) | 178.0 |
O4—H4A···O3' | 0.82 | 2.26 | 3.061 (10) | 166.1 |
N3—H3A···O3iv | 0.86 | 2.35 | 3.161 (3) | 156.6 |
N3—H3B···O1v | 0.86 | 2.27 | 3.085 (3) | 157.5 |
C3—H3···O2v | 0.93 | 2.57 | 3.274 (4) | 132.8 |
C3—H3···O2'v | 0.93 | 2.51 | 3.284 (5) | 141.2 |
Symmetry codes: (iv) −x+3/2, −y+3/2, −z+1; (v) x, −y+1, z+1/2. |
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N-Hydroxypyridine-2-carboxamidine (pyaoxH2) is structurally similar to pyridine-2-carbaldehyde oxime (paoH), which has been widely studied as a bridging ligand to construct polynuclear species. Such compounds have been found to show interesting magnetic properties and have therefore attracted much interest in recent years (Chaudhuri, 2003; Milios et al., 2006). However, pyaoxH2 has received much less attention, and only a few mononuclear complexes have been structurally characterized, more than ten years ago (Näsäkkälä et al., 1989; Pearse, Raithby, Hay & Lewis, 1989; Pearse, Raithby & Lewis, 1989; Werner et al., 1996; Orama & Saarinen, 1996). The coordination chemistry of pyaoxH2 awaits further elucidation. It is worth mentioning that special interest has been devoted to the oxime–AgI compound for hydrogen- bonded supramolecular architectures (Aakeröy et al., 1998). In this paper, we report the novel two-dimensional complex Ag(pyaoxH2)NO3, (I), which exhibits a three-dimensional hydrogen-bonded architecture.
Fig. 1 shows the environment of Ag1, coordinated by two N atoms from two pyaoxH2 ligands and two O atoms from two nitrate anions. The Ag—N/O bond distances are in the range 2.274 (1)–2.531 (5) Å (Table 1), with the Ag—N bonds longer than the Ag—O bonds. The coordination configuration is distored tetrahedral. The deviation of atom Ag1 from the coordination plane defined by atoms N2, O1 and N4i [symmetry code: (i) -x + 1, y, -z + 1/2] is 0.284 (1) Å, showing significant distortion toward trigonal–bipyrimidal geometry, possibly as a result of the weak Ag···Ag contact [2.869 (1) Å]. The pyaoxH2 ligand coordinates two Ag ions using the pyridyl and the oxime N atoms; therefore, the pyridine and the amidoxime group are not coplanar in order to avoid steric hindrance. Interestingly, the oxime O atoms are not involved in coordination. The N—O bond distance is 1.414 (2) Å, similar to that in mononuclear ZnII or CuII complexes (Näsäkkälä et al., 1989; Pearse, Raithby, Hay & Lewis, 1989; Pearse, Raithby & Lewis, 1989; Werner et al., 1996; Orama & Saarinen, 1996). The dimeric AgI units bridged by one pyaoxH2 ligand are related by a twofold axis and are further linked by nitrate anions, giving rise to a two-dimensional layer structure. Two O atoms of each nitrate anion are involved in coordination. The layer is fishscale-like, and each scale consists of six Ag atoms or three Ag2 units. Within each layer, atom H4A attached to the oxime atom O4 shows interaction with the nonbridging atom O3 of the nitrate anion (Table 2).
Alternate fishscale layers have the opposite sense. The AgI ions are nearly coplanar within a layer, with the pyaoxH2 ligands situated at two sides of the Ag layer. Two amide H atoms (H3A and H3B) of each pyaoxH2 ligand are, respectively, connected to atoms O3iv and O1v [symmetry codes: (iv) -x + 3/2, -y + 3/2, -z + 1; (v) x, -y + 1, z + 1/2 of two nitrate anions in the adjacent layer. A weak interlayer C—H···O contact further links the neighbouring layers, giving rise to a three-dimensional supramolecular network.