Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270102011691/gd1209sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270102011691/gd1209Isup2.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270102011691/gd1209IIsup3.hkl |
CCDC references: 193457; 193458
Both title compounds were obtained from Bachem and used as received. Crystals were grown by fast evaporation of aqueous solutions at ambient temperature. The crystals of (II) were of high quality, but the crystals of (I) were usually twinned and/or displayed obvious orientational disorder for layers along the c axis. The specimen selected for data collection was fairly small, but not twinned.
Due to problems with the crystal quality for (I), the refinement converged at a considerably higher R-factor than for (II), with higher s.u.s for the geometric parameters. Isotropic refinement of H atoms was thus limited to those bonded to N and O in (II); other H atoms were placed geometrically and refined with C—H = 0.92–1.01 Å and N—H 0.86–0.92 Å. Are these the correct constraints? Free rotation of amino and methyl groups (without disorder) was permitted. Uiso values were 1.2Ueq of the carrier atom, or 1.5Ueq for methyl and amino groups. Friedel pairs were merged in the final refinement of (I). The Flack parameter [-0.6 (4); Flack, 1983] for (II) did not allow the absolute structure, which was known for the purchased material, to be determined from the refinement (Flack & Bernadinelli, 2000).
For both compounds, data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Bruker, 2000); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
C7H14N2O3 | Dx = 1.379 Mg m−3 |
Mr = 174.20 | Mo Kα radiation, λ = 0.71073 Å |
Tetragonal, I4 | Cell parameters from 3540 reflections |
Hall symbol: I 4 | θ = 1.6–27.1° |
a = 17.9290 (12) Å | µ = 0.11 mm−1 |
c = 5.2196 (5) Å | T = 105 K |
V = 1677.8 (2) Å3 | Needle, colourless |
Z = 8 | 0.65 × 0.12 × 0.05 mm |
F(000) = 752 |
Bruker SMART CCD area-detector diffractometer | 1029 independent reflections |
Radiation source: fine-focus sealed tube | 1001 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
Detector resolution: 8.3 pixels mm-1 | θmax = 27.1°, θmin = 1.6° |
Sets of exposures each taken over 0.3° ω rotation scans | h = −22→16 |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | k = −22→22 |
Tmin = 0.932, Tmax = 0.995 | l = −6→6 |
5085 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.079 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.180 | H-atom parameters constrained |
S = 1.27 | w = 1/[σ2(Fo2) + (0.0203P)2 + 13.6465P] where P = (Fo2 + 2Fc2)/3 |
1029 reflections | (Δ/σ)max = 0.003 |
121 parameters | Δρmax = 0.36 e Å−3 |
13 restraints | Δρmin = −0.39 e Å−3 |
C7H14N2O3 | Z = 8 |
Mr = 174.20 | Mo Kα radiation |
Tetragonal, I4 | µ = 0.11 mm−1 |
a = 17.9290 (12) Å | T = 105 K |
c = 5.2196 (5) Å | 0.65 × 0.12 × 0.05 mm |
V = 1677.8 (2) Å3 |
Bruker SMART CCD area-detector diffractometer | 1029 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | 1001 reflections with I > 2σ(I) |
Tmin = 0.932, Tmax = 0.995 | Rint = 0.041 |
5085 measured reflections |
R[F2 > 2σ(F2)] = 0.079 | 13 restraints |
wR(F2) = 0.180 | H-atom parameters constrained |
S = 1.27 | w = 1/[σ2(Fo2) + (0.0203P)2 + 13.6465P] where P = (Fo2 + 2Fc2)/3 |
1029 reflections | Δρmax = 0.36 e Å−3 |
121 parameters | Δρmin = −0.39 e Å−3 |
Experimental. Data were collected by measuring three sets (I) and five sets (II) of exposures with the detector set at 2θ = 29°, crystal-to-detector distance 4.98 cm. |
Refinement. Refinement of F2 against ALL reflections. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.7237 (2) | −0.1241 (2) | 0.2407 (8) | 0.0183 (9) | |
O2 | 0.7414 (2) | 0.1470 (2) | 0.2108 (10) | 0.0191 (9) | |
O3 | 0.7550 (3) | 0.0763 (3) | −0.1333 (9) | 0.0250 (11) | |
N1 | 0.7920 (3) | −0.1870 (3) | 0.6360 (12) | 0.0168 (11) | |
H1 | 0.827 (3) | −0.2019 (7) | 0.755 (8) | 0.025* | |
H2 | 0.808 (3) | −0.2014 (7) | 0.476 (8) | 0.025* | |
H3 | 0.747 (2) | −0.2088 (10) | 0.672 (10) | 0.025* | |
N2 | 0.7187 (3) | −0.0067 (3) | 0.4167 (11) | 0.0162 (11) | |
H4 | 0.7306 | 0.0196 | 0.5483 | 0.019* | |
C1 | 0.7841 (3) | −0.1040 (3) | 0.6442 (12) | 0.0122 (11) | |
H11 | 0.7567 | −0.0905 | 0.8000 | 0.015* | |
C2 | 0.8606 (3) | −0.0666 (3) | 0.6536 (13) | 0.0173 (12) | |
H21 | 0.8930 | −0.0939 | 0.7692 | 0.021* | 0.50 |
H22 | 0.8555 | −0.0161 | 0.7179 | 0.021* | 0.50 |
H23 | 0.8563 | −0.0159 | 0.5905 | 0.021* | 0.50 |
H24 | 0.8946 | −0.0933 | 0.5419 | 0.021* | 0.50 |
C31 | 0.8967 (7) | −0.0648 (8) | 0.374 (3) | 0.021 (3) | 0.50 |
H31 | 0.9445 | −0.0408 | 0.3819 | 0.032* | 0.50 |
H32 | 0.8646 | −0.0377 | 0.2603 | 0.032* | 0.50 |
H33 | 0.9027 | −0.1149 | 0.3126 | 0.032* | 0.50 |
C32 | 0.8943 (8) | −0.0652 (7) | 0.941 (3) | 0.019 (3) | 0.50 |
H34 | 0.9421 | −0.0411 | 0.9400 | 0.028* | 0.50 |
H35 | 0.8998 | −0.1154 | 1.0027 | 0.028* | 0.50 |
H36 | 0.8610 | −0.0384 | 1.0520 | 0.028* | 0.50 |
C4 | 0.7382 (3) | −0.0795 (3) | 0.4127 (12) | 0.0137 (11) | |
C5 | 0.6781 (3) | 0.0294 (3) | 0.2067 (13) | 0.0184 (13) | |
H51 | 0.6656 | −0.0084 | 0.0781 | 0.022* | |
C6 | 0.6060 (4) | 0.0644 (4) | 0.3054 (15) | 0.0280 (16) | |
H61 | 0.5730 | 0.0258 | 0.3638 | 0.042* | |
H62 | 0.5825 | 0.0918 | 0.1697 | 0.042* | |
H63 | 0.6171 | 0.0975 | 0.4448 | 0.042* | |
C7 | 0.7291 (3) | 0.0887 (3) | 0.0812 (13) | 0.0153 (12) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.027 (2) | 0.019 (2) | 0.0091 (19) | −0.0028 (17) | −0.005 (2) | −0.0056 (19) |
O2 | 0.025 (2) | 0.0136 (19) | 0.019 (2) | −0.0019 (16) | −0.005 (2) | −0.0054 (18) |
O3 | 0.038 (3) | 0.022 (2) | 0.015 (2) | −0.0038 (19) | −0.002 (2) | 0.000 (2) |
N1 | 0.011 (2) | 0.015 (2) | 0.024 (3) | 0.0020 (18) | −0.003 (2) | 0.009 (2) |
N2 | 0.024 (3) | 0.010 (2) | 0.015 (3) | −0.0022 (18) | −0.008 (2) | 0.005 (2) |
C1 | 0.016 (3) | 0.012 (2) | 0.009 (2) | 0.0014 (19) | 0.002 (2) | 0.000 (2) |
C2 | 0.015 (3) | 0.018 (3) | 0.019 (3) | −0.003 (2) | 0.002 (3) | −0.004 (3) |
C31 | 0.012 (5) | 0.032 (6) | 0.020 (6) | −0.008 (5) | 0.002 (5) | −0.001 (5) |
C32 | 0.023 (5) | 0.013 (5) | 0.021 (6) | 0.003 (4) | −0.009 (5) | −0.006 (5) |
C4 | 0.013 (3) | 0.017 (3) | 0.011 (3) | −0.004 (2) | 0.001 (2) | 0.002 (2) |
C5 | 0.022 (3) | 0.013 (3) | 0.020 (3) | −0.004 (2) | −0.008 (3) | 0.009 (3) |
C6 | 0.017 (3) | 0.033 (4) | 0.035 (4) | 0.001 (3) | −0.001 (3) | 0.015 (3) |
C7 | 0.014 (3) | 0.014 (3) | 0.017 (3) | 0.002 (2) | −0.005 (2) | 0.002 (2) |
O1—C4 | 1.230 (7) | C2—H22 | 0.9700 |
O2—C7 | 1.265 (7) | C2—H23 | 0.9700 |
O3—C7 | 1.233 (8) | C2—H24 | 0.9700 |
N1—C1 | 1.497 (7) | C31—H31 | 0.9600 |
N1—H1 | 0.9184 | C31—H32 | 0.9600 |
N1—H2 | 0.9184 | C31—H33 | 0.9600 |
N1—H3 | 0.9184 | C32—H34 | 0.9600 |
N2—C4 | 1.351 (7) | C32—H35 | 0.9600 |
N2—C5 | 1.467 (7) | C32—H36 | 0.9600 |
N2—H4 | 0.8600 | C5—C6 | 1.527 (9) |
C1—C4 | 1.526 (8) | C5—C7 | 1.546 (8) |
C1—C2 | 1.526 (7) | C5—H51 | 0.9800 |
C1—H11 | 0.9800 | C6—H61 | 0.9600 |
C2—C31 | 1.595 (14) | C6—H62 | 0.9600 |
C2—C32 | 1.620 (14) | C6—H63 | 0.9600 |
C2—H21 | 0.9700 | ||
C1—N1—H1 | 109.5 | C2—C31—H32 | 109.5 |
C1—N1—H2 | 109.5 | H31—C31—H32 | 109.5 |
H1—N1—H2 | 109.5 | C2—C31—H33 | 109.5 |
C1—N1—H3 | 109.5 | H31—C31—H33 | 109.5 |
H1—N1—H3 | 109.5 | H32—C31—H33 | 109.5 |
H2—N1—H3 | 109.5 | C2—C32—H34 | 109.5 |
C4—N2—C5 | 122.9 (5) | C2—C32—H35 | 109.5 |
C4—N2—H4 | 118.5 | H34—C32—H35 | 109.5 |
C5—N2—H4 | 118.5 | C2—C32—H36 | 109.5 |
N1—C1—C4 | 108.3 (5) | H34—C32—H36 | 109.5 |
N1—C1—C2 | 110.6 (4) | H35—C32—H36 | 109.5 |
C4—C1—C2 | 112.5 (5) | O1—C4—N2 | 125.7 (6) |
N1—C1—H11 | 108.4 | O1—C4—C1 | 120.4 (5) |
C4—C1—H11 | 108.4 | N2—C4—C1 | 113.9 (5) |
C2—C1—H11 | 108.4 | N2—C5—C6 | 110.5 (6) |
C1—C2—C31 | 110.1 (7) | N2—C5—C7 | 109.1 (5) |
C1—C2—C32 | 111.8 (7) | C6—C5—C7 | 111.2 (5) |
C31—C2—C32 | 134.1 (6) | N2—C5—H51 | 108.7 |
C1—C2—H21 | 109.6 | C6—C5—H51 | 108.7 |
C31—C2—H21 | 109.6 | C7—C5—H51 | 108.7 |
C1—C2—H22 | 109.6 | C5—C6—H61 | 109.5 |
C31—C2—H22 | 109.6 | C5—C6—H62 | 109.5 |
H21—C2—H22 | 108.2 | H61—C6—H62 | 109.5 |
C1—C2—H23 | 109.3 | C5—C6—H63 | 109.5 |
C32—C2—H23 | 109.3 | H61—C6—H63 | 109.5 |
C1—C2—H24 | 109.3 | H62—C6—H63 | 109.5 |
C32—C2—H24 | 109.3 | O3—C7—O2 | 124.6 (6) |
H23—C2—H24 | 107.9 | O3—C7—C5 | 119.0 (6) |
C2—C31—H31 | 109.5 | O2—C7—C5 | 116.4 (6) |
N1—C1—C4—N2 | 171.6 (5) | C5—N2—C4—O1 | −1.6 (9) |
C1—C4—N2—C5 | 176.5 (5) | N1—C1—C4—O1 | −10.1 (7) |
C4—N2—C5—C7 | −114.3 (6) | C2—C1—C4—O1 | 112.5 (6) |
N2—C5—C7—O2 | −71.7 (7) | C2—C1—C4—N2 | −65.8 (6) |
N1—C1—C2—C31 | 79.1 (8) | C4—N2—C5—C6 | 123.2 (6) |
N1—C1—C2—C32 | −81.8 (7) | N2—C5—C7—O3 | 107.9 (6) |
C4—C1—C2—C31 | −42.2 (8) | C6—C5—C7—O3 | −130.1 (6) |
C4—C1—C2—C32 | 156.9 (6) | C6—C5—C7—O2 | 50.4 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3i | 0.92 | 1.99 | 2.846 (7) | 154 |
N1—H2···O2ii | 0.92 | 1.90 | 2.787 (7) | 160 |
N1—H3···O2iii | 0.92 | 1.89 | 2.804 (6) | 170 |
N2—H4···O3iv | 0.86 | 2.00 | 2.856 (7) | 177 |
C1—H11···O1iv | 0.98 | 2.45 | 3.316 (7) | 147 |
Symmetry codes: (i) −y+1, x−1, z+1; (ii) −y+1, x−1, z; (iii) y+1/2, −x+1/2, z+1/2; (iv) x, y, z+1. |
C7H14N2O3·0.33H2O | F(000) = 584 |
Mr = 180.21 | Dx = 1.282 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 7806 reflections |
a = 15.4292 (5) Å | θ = 2.2–35.0° |
b = 5.4602 (2) Å | µ = 0.10 mm−1 |
c = 18.1320 (6) Å | T = 105 K |
β = 113.505 (1)° | Needle, colourless |
V = 1400.81 (8) Å3 | 1.30 × 0.12 × 0.08 mm |
Z = 6 |
Siemens SMART CCD area-detector diffractometer | 10606 independent reflections |
Radiation source: fine-focus sealed tube | 7926 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
Detector resolution: 8.3 pixels mm-1 | θmax = 35.0°, θmin = 2.2° |
Sets of exposures each taken over 0.3° ω rotation scans | h = −24→19 |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | k = −8→8 |
Tmin = 0.876, Tmax = 0.992 | l = −29→28 |
19775 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.037 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.074 | w = 1/[σ2(Fo2) + (0.0371P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.94 | (Δ/σ)max = 0.002 |
10606 reflections | Δρmax = 0.33 e Å−3 |
406 parameters | Δρmin = −0.27 e Å−3 |
1 restraint | Absolute structure: Flack (1983), with 3916 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.6 (4) |
C7H14N2O3·0.33H2O | V = 1400.81 (8) Å3 |
Mr = 180.21 | Z = 6 |
Monoclinic, P21 | Mo Kα radiation |
a = 15.4292 (5) Å | µ = 0.10 mm−1 |
b = 5.4602 (2) Å | T = 105 K |
c = 18.1320 (6) Å | 1.30 × 0.12 × 0.08 mm |
β = 113.505 (1)° |
Siemens SMART CCD area-detector diffractometer | 10606 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | 7926 reflections with I > 2σ(I) |
Tmin = 0.876, Tmax = 0.992 | Rint = 0.030 |
19775 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.074 | Δρmax = 0.33 e Å−3 |
S = 0.94 | Δρmin = −0.27 e Å−3 |
10606 reflections | Absolute structure: Flack (1983), with 3916 Friedel pairs |
406 parameters | Absolute structure parameter: −0.6 (4) |
1 restraint |
Experimental. Data were collected by measuring three sets (I) and five sets (II) of exposures with the detector set at 2θ = 29°, crystal-to-detector distance 4.98 cm. |
Refinement. Refinement of F2 against ALL reflections. |
x | y | z | Uiso*/Ueq | ||
O1A | 0.66764 (6) | −0.23626 (15) | 0.07991 (5) | 0.02516 (18) | |
O2A | 0.87241 (6) | −0.25972 (16) | 0.27773 (5) | 0.02757 (19) | |
O3A | 0.90727 (6) | −0.57948 (15) | 0.21725 (5) | 0.02571 (18) | |
N1A | 0.54763 (7) | 0.11879 (18) | 0.07177 (5) | 0.01675 (18) | |
H1A | 0.5072 (10) | 0.220 (3) | 0.0868 (8) | 0.027 (2)* | |
H2A | 0.5331 (9) | 0.125 (3) | 0.0191 (9) | 0.027 (2)* | |
H3A | 0.5355 (9) | −0.033 (3) | 0.0860 (8) | 0.027 (2)* | |
N2A | 0.80056 (7) | −0.00452 (17) | 0.13449 (5) | 0.01690 (18) | |
H4A | 0.8261 (9) | 0.126 (3) | 0.1563 (8) | 0.020* | |
C1A | 0.64989 (7) | 0.1791 (2) | 0.11520 (6) | 0.0161 (2) | |
H11A | 0.6646 (2) | 0.315 (2) | 0.0912 (4) | 0.019* | |
C2A | 0.67105 (9) | 0.2368 (3) | 0.20291 (7) | 0.0290 (3) | |
H21A | 0.6325 (6) | 0.3796 (16) | 0.20578 (8) | 0.035 (2)* | |
H22A | 0.7393 (6) | 0.2761 (17) | 0.2317 (3) | 0.035 (2)* | |
H23A | 0.6551 (6) | 0.0925 (14) | 0.2285 (3) | 0.035 (2)* | |
C3A | 0.70650 (7) | −0.0416 (2) | 0.10763 (6) | 0.0160 (2) | |
C4A | 0.86442 (7) | −0.2082 (2) | 0.14295 (6) | 0.0175 (2) | |
H41A | 0.8358 (4) | −0.3157 (15) | 0.0951 (6) | 0.021* | |
C5A | 0.95980 (8) | −0.1159 (2) | 0.14623 (7) | 0.0234 (2) | |
H51A | 0.9921 (3) | −0.0190 (10) | 0.1974 (5) | 0.028* | |
H52A | 1.0011 (4) | −0.2616 (15) | 0.14851 (7) | 0.028* | |
C6A | 0.95190 (9) | 0.0441 (3) | 0.07488 (8) | 0.0303 (3) | |
H61A | 1.0146 (6) | 0.0880 (15) | 0.0792 (3) | 0.041 (2)* | |
H62A | 0.9168 (6) | 0.1915 (16) | 0.0748 (3) | 0.041 (2)* | |
H63A | 0.9192 (6) | −0.0455 (10) | 0.0253 (5) | 0.041 (2)* | |
C7A | 0.88194 (8) | −0.3631 (2) | 0.21884 (6) | 0.0191 (2) | |
O1B | 0.89076 (6) | 0.11117 (14) | 0.49263 (5) | 0.02087 (16) | |
O2B | 0.62797 (5) | 0.08467 (14) | 0.53299 (4) | 0.01756 (15) | |
O3B | 0.69540 (5) | −0.28414 (14) | 0.56143 (5) | 0.02018 (16) | |
N1B | 0.91399 (7) | 0.51356 (19) | 0.42298 (6) | 0.01827 (18) | |
H1B | 0.9720 (10) | 0.562 (3) | 0.4563 (8) | 0.025 (2)* | |
H2B | 0.9194 (10) | 0.360 (3) | 0.4080 (8) | 0.025 (2)* | |
H3B | 0.8906 (9) | 0.608 (3) | 0.3749 (8) | 0.025 (2)* | |
N2B | 0.80086 (6) | 0.28465 (17) | 0.55201 (5) | 0.01624 (18) | |
H4B | 0.7730 (9) | 0.416 (3) | 0.5563 (8) | 0.019* | |
C1B | 0.84414 (7) | 0.53200 (19) | 0.46086 (6) | 0.0161 (2) | |
H11B | 0.8627 (3) | 0.6636 (18) | 0.4998 (5) | 0.019* | |
C2B | 0.74622 (8) | 0.5856 (2) | 0.39696 (7) | 0.0244 (2) | |
H21B | 0.74776 (15) | 0.7349 (14) | 0.3702 (4) | 0.0222 (18)* | |
H22B | 0.7024 (4) | 0.6005 (14) | 0.4218 (2) | 0.0222 (18)* | |
H23B | 0.7272 (3) | 0.4551 (12) | 0.3589 (4) | 0.0222 (18)* | |
C3B | 0.84762 (7) | 0.28960 (19) | 0.50425 (6) | 0.0153 (2) | |
C4B | 0.79675 (7) | 0.06676 (19) | 0.59754 (6) | 0.01534 (19) | |
H41B | 0.8430 (7) | −0.0484 (16) | 0.59611 (6) | 0.018* | |
C5B | 0.82108 (8) | 0.1379 (2) | 0.68550 (6) | 0.0218 (2) | |
H51B | 0.8771 (6) | 0.2210 (10) | 0.7047 (2) | 0.026* | |
H52B | 0.7755 (5) | 0.2413 (12) | 0.68746 (7) | 0.026* | |
C6B | 0.82897 (9) | −0.0813 (3) | 0.73994 (7) | 0.0292 (3) | |
H61B | 0.8474 (6) | −0.0254 (5) | 0.7949 (5) | 0.044 (3)* | |
H62B | 0.8762 (6) | −0.1941 (13) | 0.7373 (4) | 0.044 (3)* | |
H63B | 0.7684 (5) | −0.1638 (13) | 0.7223 (4) | 0.044 (3)* | |
C7B | 0.69873 (7) | −0.0548 (2) | 0.56032 (6) | 0.01402 (19) | |
O1C | 0.59661 (6) | 0.14929 (14) | 0.69421 (4) | 0.02234 (17) | |
O2C | 0.53247 (6) | 0.17473 (15) | 0.91328 (5) | 0.02070 (16) | |
O3C | 0.57229 (6) | −0.16241 (15) | 0.86590 (5) | 0.02214 (17) | |
N1C | 0.54905 (7) | 0.49187 (17) | 0.58420 (5) | 0.01371 (17) | |
H1C | 0.5945 (9) | 0.577 (3) | 0.5714 (8) | 0.0211 (19)* | |
H2C | 0.5669 (9) | 0.330 (3) | 0.5892 (8) | 0.0211 (19)* | |
H3C | 0.4941 (10) | 0.502 (3) | 0.5487 (8) | 0.0211 (19)* | |
N2C | 0.60627 (7) | 0.39411 (17) | 0.79846 (5) | 0.01611 (18) | |
H4C | 0.5972 (9) | 0.541 (3) | 0.8130 (8) | 0.019* | |
C1C | 0.55322 (7) | 0.57171 (19) | 0.66439 (6) | 0.01407 (19) | |
H11C | 0.5976 (7) | 0.6950 (18) | 0.6837 (3) | 0.017* | |
C2C | 0.45825 (8) | 0.6697 (2) | 0.65850 (7) | 0.0241 (2) | |
H21C | 0.4381 (3) | 0.8017 (15) | 0.6196 (5) | 0.031 (2)* | |
H22C | 0.46445 (17) | 0.7303 (15) | 0.7106 (4) | 0.031 (2)* | |
H23C | 0.4118 (4) | 0.5395 (11) | 0.6415 (5) | 0.031 (2)* | |
C3C | 0.58710 (7) | 0.3500 (2) | 0.72085 (6) | 0.01440 (19) | |
C4C | 0.65199 (7) | 0.2088 (2) | 0.86028 (6) | 0.0148 (2) | |
H41C | 0.6842 (5) | 0.1011 (16) | 0.8408 (3) | 0.018* | |
C5C | 0.72384 (8) | 0.3338 (2) | 0.93545 (6) | 0.0199 (2) | |
H51C | 0.6921 (3) | 0.4525 (12) | 0.9543 (2) | 0.024* | |
H52C | 0.7508 (3) | 0.2143 (12) | 0.9768 (4) | 0.024* | |
C6C | 0.80285 (9) | 0.4594 (3) | 0.91912 (7) | 0.0298 (3) | |
H61C | 0.8482 (6) | 0.5292 (17) | 0.9686 (5) | 0.045 (3)* | |
H62C | 0.7763 (3) | 0.5884 (16) | 0.8798 (6) | 0.045 (3)* | |
H63C | 0.8342 (5) | 0.3404 (12) | 0.8986 (6) | 0.045 (3)* | |
C7C | 0.57943 (7) | 0.06209 (19) | 0.88070 (6) | 0.01451 (19) | |
O1W | 0.98203 (7) | 0.14204 (19) | 0.35508 (5) | 0.0307 (2) | |
H1W | 0.9521 (12) | 0.016 (4) | 0.3371 (11) | 0.046* | |
H2W | 0.9659 (12) | 0.241 (4) | 0.3163 (11) | 0.046* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1A | 0.0225 (4) | 0.0170 (4) | 0.0394 (5) | −0.0009 (3) | 0.0159 (4) | −0.0042 (3) |
O2A | 0.0443 (5) | 0.0202 (4) | 0.0221 (4) | 0.0007 (4) | 0.0174 (4) | 0.0017 (3) |
O3A | 0.0294 (4) | 0.0175 (4) | 0.0281 (4) | 0.0030 (4) | 0.0093 (3) | 0.0018 (3) |
N1A | 0.0195 (4) | 0.0152 (4) | 0.0181 (4) | 0.0007 (4) | 0.0103 (4) | −0.0001 (3) |
N2A | 0.0182 (4) | 0.0139 (4) | 0.0196 (4) | 0.0006 (4) | 0.0085 (3) | −0.0005 (3) |
C1A | 0.0185 (5) | 0.0133 (5) | 0.0197 (5) | −0.0011 (4) | 0.0110 (4) | −0.0013 (4) |
C2A | 0.0244 (6) | 0.0422 (8) | 0.0218 (5) | 0.0025 (6) | 0.0107 (5) | −0.0104 (5) |
C3A | 0.0189 (5) | 0.0170 (5) | 0.0160 (4) | 0.0026 (4) | 0.0111 (4) | 0.0038 (4) |
C4A | 0.0174 (5) | 0.0175 (5) | 0.0184 (5) | 0.0033 (4) | 0.0080 (4) | −0.0005 (4) |
C5A | 0.0180 (5) | 0.0276 (6) | 0.0250 (5) | 0.0054 (5) | 0.0090 (4) | 0.0059 (5) |
C6A | 0.0260 (6) | 0.0378 (8) | 0.0331 (6) | 0.0063 (6) | 0.0181 (5) | 0.0112 (6) |
C7A | 0.0187 (5) | 0.0163 (5) | 0.0216 (5) | −0.0020 (4) | 0.0073 (4) | 0.0003 (4) |
O1B | 0.0249 (4) | 0.0158 (4) | 0.0269 (4) | 0.0021 (3) | 0.0157 (3) | 0.0015 (3) |
O2B | 0.0147 (3) | 0.0190 (4) | 0.0161 (3) | 0.0026 (3) | 0.0031 (3) | −0.0013 (3) |
O3B | 0.0202 (4) | 0.0147 (4) | 0.0292 (4) | −0.0007 (3) | 0.0135 (3) | −0.0005 (3) |
N1B | 0.0196 (5) | 0.0160 (5) | 0.0222 (4) | −0.0008 (4) | 0.0116 (4) | 0.0022 (4) |
N2B | 0.0178 (4) | 0.0129 (4) | 0.0212 (4) | 0.0012 (4) | 0.0110 (3) | 0.0022 (3) |
C1B | 0.0190 (5) | 0.0140 (5) | 0.0174 (5) | 0.0003 (4) | 0.0095 (4) | 0.0002 (4) |
C2B | 0.0206 (5) | 0.0313 (7) | 0.0214 (5) | 0.0039 (5) | 0.0086 (4) | 0.0083 (5) |
C3B | 0.0138 (5) | 0.0156 (5) | 0.0155 (4) | −0.0024 (4) | 0.0049 (4) | −0.0004 (4) |
C4B | 0.0141 (5) | 0.0143 (5) | 0.0183 (4) | 0.0006 (4) | 0.0071 (4) | 0.0029 (4) |
C5B | 0.0196 (5) | 0.0265 (6) | 0.0167 (5) | −0.0052 (5) | 0.0044 (4) | −0.0001 (4) |
C6B | 0.0282 (6) | 0.0375 (7) | 0.0184 (5) | −0.0029 (6) | 0.0057 (5) | 0.0077 (5) |
C7B | 0.0166 (5) | 0.0166 (5) | 0.0116 (4) | −0.0016 (4) | 0.0086 (4) | −0.0014 (4) |
O1C | 0.0357 (5) | 0.0156 (4) | 0.0170 (3) | 0.0030 (4) | 0.0119 (3) | 0.0006 (3) |
O2C | 0.0237 (4) | 0.0199 (4) | 0.0255 (4) | 0.0040 (3) | 0.0172 (3) | 0.0020 (3) |
O3C | 0.0290 (4) | 0.0170 (4) | 0.0268 (4) | −0.0022 (3) | 0.0179 (3) | −0.0017 (3) |
N1C | 0.0139 (4) | 0.0145 (4) | 0.0122 (4) | 0.0012 (3) | 0.0047 (3) | 0.0009 (3) |
N2C | 0.0222 (4) | 0.0133 (4) | 0.0149 (4) | 0.0018 (4) | 0.0097 (3) | 0.0011 (3) |
C1C | 0.0151 (5) | 0.0139 (5) | 0.0131 (4) | 0.0000 (4) | 0.0056 (4) | 0.0000 (4) |
C2C | 0.0231 (6) | 0.0313 (6) | 0.0189 (5) | 0.0094 (5) | 0.0093 (4) | −0.0001 (4) |
C3C | 0.0148 (5) | 0.0147 (5) | 0.0152 (4) | −0.0012 (4) | 0.0076 (4) | 0.0010 (4) |
C4C | 0.0165 (5) | 0.0163 (5) | 0.0138 (4) | 0.0020 (4) | 0.0084 (4) | 0.0023 (4) |
C5C | 0.0186 (5) | 0.0245 (6) | 0.0162 (5) | −0.0035 (5) | 0.0066 (4) | 0.0011 (4) |
C6C | 0.0250 (6) | 0.0385 (7) | 0.0249 (6) | −0.0125 (6) | 0.0089 (5) | 0.0006 (5) |
C7C | 0.0146 (5) | 0.0166 (5) | 0.0122 (4) | 0.0011 (4) | 0.0052 (4) | 0.0020 (4) |
O1W | 0.0423 (6) | 0.0230 (5) | 0.0254 (4) | 0.0024 (4) | 0.0121 (4) | 0.0008 (4) |
O1A—C3A | 1.2255 (14) | C2B—H22B | 0.9537 |
O2A—C7A | 1.2672 (14) | C2B—H23B | 0.9537 |
O3A—C7A | 1.2482 (14) | C4B—C5B | 1.5355 (14) |
N1A—C1A | 1.4923 (14) | C4B—C7B | 1.5392 (15) |
N1A—H1A | 0.952 (15) | C4B—H41B | 0.9595 |
N1A—H2A | 0.890 (14) | C5B—C6B | 1.5249 (17) |
N1A—H3A | 0.910 (16) | C5B—H51B | 0.9137 |
N2A—C3A | 1.3492 (14) | C5B—H52B | 0.9137 |
N2A—C4A | 1.4530 (14) | C6B—H61B | 0.9701 |
N2A—H4A | 0.834 (15) | C6B—H62B | 0.9701 |
C1A—C2A | 1.5235 (14) | C6B—H63B | 0.9701 |
C1A—C3A | 1.5262 (15) | O1C—C3C | 1.2298 (13) |
C1A—H11A | 0.9331 | O2C—C7C | 1.2624 (13) |
C2A—H21A | 0.9942 | O3C—C7C | 1.2503 (14) |
C2A—H22A | 0.9942 | N1C—C1C | 1.4945 (13) |
C2A—H23A | 0.9942 | N1C—H1C | 0.944 (14) |
C4A—C5A | 1.5342 (15) | N1C—H2C | 0.918 (15) |
C4A—C7A | 1.5444 (15) | N1C—H3C | 0.837 (14) |
C4A—H41A | 0.9935 | N2C—C3C | 1.3394 (13) |
C5A—C6A | 1.5250 (16) | N2C—C4C | 1.4653 (13) |
C5A—H51A | 1.0095 | N2C—H4C | 0.874 (15) |
C5A—H52A | 1.0095 | C1C—C2C | 1.5232 (15) |
C6A—H61A | 0.9694 | C1C—C3C | 1.5362 (14) |
C6A—H62A | 0.9694 | C1C—H11C | 0.9237 |
C6A—H63A | 0.9694 | C2C—H21C | 0.9681 |
O1B—C3B | 1.2444 (13) | C2C—H22C | 0.9681 |
O2B—C7B | 1.2592 (13) | C2C—H23C | 0.9681 |
O3B—C7B | 1.2539 (13) | C4C—C5C | 1.5320 (15) |
N1B—C1B | 1.4946 (14) | C4C—C7C | 1.5372 (14) |
N1B—H1B | 0.896 (14) | C4C—H41C | 0.9265 |
N1B—H2B | 0.898 (16) | C5C—C6C | 1.5271 (17) |
N1B—H3B | 0.950 (14) | C5C—H51C | 0.9549 |
N2B—C3B | 1.3301 (13) | C5C—H52C | 0.9549 |
N2B—C4B | 1.4638 (13) | C6C—H61C | 0.9694 |
N2B—H4B | 0.855 (15) | C6C—H62C | 0.9694 |
C1B—C2B | 1.5213 (15) | C6C—H63C | 0.9694 |
C1B—C3B | 1.5297 (15) | O1W—H1W | 0.82 (2) |
C1B—H11B | 0.9674 | O1W—H2W | 0.840 (19) |
C2B—H21B | 0.9537 | ||
C1A—N1A—H1A | 113.4 (8) | N2B—C3B—C1B | 115.82 (9) |
C1A—N1A—H2A | 108.6 (8) | N2B—C4B—C5B | 109.43 (9) |
H1A—N1A—H2A | 111.9 (12) | N2B—C4B—C7B | 111.05 (8) |
C1A—N1A—H3A | 110.2 (9) | C5B—C4B—C7B | 110.78 (8) |
H1A—N1A—H3A | 102.5 (12) | N2B—C4B—H41B | 108.5 |
H2A—N1A—H3A | 110.1 (13) | C5B—C4B—H41B | 108.5 |
C3A—N2A—C4A | 120.65 (9) | C7B—C4B—H41B | 108.5 |
C3A—N2A—H4A | 122.5 (9) | C6B—C5B—C4B | 113.41 (10) |
C4A—N2A—H4A | 115.6 (9) | C6B—C5B—H51B | 108.9 |
N1A—C1A—C2A | 109.74 (9) | C4B—C5B—H51B | 108.9 |
N1A—C1A—C3A | 107.52 (8) | C6B—C5B—H52B | 108.9 |
C2A—C1A—C3A | 111.42 (9) | C4B—C5B—H52B | 108.9 |
N1A—C1A—H11A | 109.4 | H51B—C5B—H52B | 107.7 |
C2A—C1A—H11A | 109.4 | C5B—C6B—H61B | 109.5 |
C3A—C1A—H11A | 109.4 | C5B—C6B—H62B | 109.5 |
C1A—C2A—H21A | 109.5 | H61B—C6B—H62B | 109.5 |
C1A—C2A—H22A | 109.5 | C5B—C6B—H63B | 109.5 |
H21A—C2A—H22A | 109.5 | H61B—C6B—H63B | 109.5 |
C1A—C2A—H23A | 109.5 | H62B—C6B—H63B | 109.5 |
H21A—C2A—H23A | 109.5 | O3B—C7B—O2B | 125.14 (10) |
H22A—C2A—H23A | 109.5 | O2B—C7B—C4B | 117.25 (9) |
O1A—C3A—N2A | 123.92 (10) | O3B—C7B—C4B | 117.58 (9) |
O1A—C3A—C1A | 121.18 (9) | C1C—N1C—H1C | 110.4 (8) |
N2A—C3A—C1A | 114.89 (9) | C1C—N1C—H2C | 106.9 (8) |
N2A—C4A—C5A | 110.61 (9) | H1C—N1C—H2C | 105.7 (11) |
N2A—C4A—C7A | 112.56 (8) | C1C—N1C—H3C | 111.4 (9) |
C5A—C4A—C7A | 108.73 (8) | H1C—N1C—H3C | 113.8 (12) |
N2A—C4A—H41A | 108.3 | H2C—N1C—H3C | 108.1 (13) |
C5A—C4A—H41A | 108.3 | C3C—N2C—C4C | 121.12 (9) |
C7A—C4A—H41A | 108.3 | C3C—N2C—H4C | 119.2 (8) |
C6A—C5A—C4A | 113.86 (9) | C4C—N2C—H4C | 119.4 (8) |
C6A—C5A—H51A | 108.8 | N1C—C1C—C2C | 111.55 (8) |
C4A—C5A—H51A | 108.8 | N1C—C1C—C3C | 106.83 (8) |
C6A—C5A—H52A | 108.8 | C2C—C1C—C3C | 112.70 (9) |
C4A—C5A—H52A | 108.8 | N1C—C1C—H11C | 108.5 |
H51A—C5A—H52A | 107.7 | C2C—C1C—H11C | 108.5 |
C5A—C6A—H61A | 109.5 | C3C—C1C—H11C | 108.5 |
C5A—C6A—H62A | 109.5 | C1C—C2C—H21C | 109.5 |
H61A—C6A—H62A | 109.5 | C1C—C2C—H22C | 109.5 |
C5A—C6A—H63A | 109.5 | H21C—C2C—H22C | 109.5 |
H61A—C6A—H63A | 109.5 | C1C—C2C—H23C | 109.5 |
H62A—C6A—H63A | 109.5 | H21C—C2C—H23C | 109.5 |
O3A—C7A—O2A | 125.72 (10) | H22C—C2C—H23C | 109.5 |
O2A—C7A—C4A | 117.96 (10) | O1C—C3C—N2C | 124.19 (10) |
O3A—C7A—C4A | 116.28 (9) | O1C—C3C—C1C | 120.18 (9) |
C1B—N1B—H1B | 112.3 (9) | N2C—C3C—C1C | 115.62 (9) |
C1B—N1B—H2B | 111.9 (9) | N2C—C4C—C5C | 109.26 (9) |
H1B—N1B—H2B | 106.9 (13) | N2C—C4C—C7C | 111.68 (8) |
C1B—N1B—H3B | 107.8 (8) | C5C—C4C—C7C | 110.85 (8) |
H1B—N1B—H3B | 111.8 (12) | N2C—C4C—H41C | 108.3 |
H2B—N1B—H3B | 106.0 (12) | C5C—C4C—H41C | 108.3 |
C3B—N2B—C4B | 122.71 (9) | C7C—C4C—H41C | 108.3 |
C3B—N2B—H4B | 117.7 (9) | C6C—C5C—C4C | 112.20 (9) |
C4B—N2B—H4B | 119.6 (9) | C6C—C5C—H51C | 109.2 |
N1B—C1B—C2B | 110.00 (9) | C4C—C5C—H51C | 109.2 |
N1B—C1B—C3B | 107.11 (9) | C6C—C5C—H52C | 109.2 |
C2B—C1B—C3B | 112.25 (9) | C4C—C5C—H52C | 109.2 |
N1B—C1B—H11B | 109.1 | H51C—C5C—H52C | 107.9 |
C2B—C1B—H11B | 109.1 | C5C—C6C—H61C | 109.5 |
C3B—C1B—H11B | 109.1 | C5C—C6C—H62C | 109.5 |
C1B—C2B—H21B | 109.5 | H61C—C6C—H62C | 109.5 |
C1B—C2B—H22B | 109.5 | C5C—C6C—H63C | 109.5 |
H21B—C2B—H22B | 109.5 | H61C—C6C—H63C | 109.5 |
C1B—C2B—H23B | 109.5 | H62C—C6C—H63C | 109.5 |
H21B—C2B—H23B | 109.5 | O3C—C7C—O2C | 124.07 (10) |
H22B—C2B—H23B | 109.5 | O2C—C7C—C4C | 117.90 (9) |
O1B—C3B—N2B | 124.06 (10) | O3C—C7C—C4C | 118.00 (9) |
O1B—C3B—C1B | 120.11 (9) | H1W—O1W—H2W | 105.8 (17) |
N1A—C1A—C3A—N2A | 171.50 (8) | C2B—C1B—C3B—O1B | 109.52 (11) |
C1A—C3A—N2A—C4A | 170.07 (9) | C2B—C1B—C3B—N2B | −69.12 (12) |
C3A—N2A—C4A—C7A | −77.26 (12) | C3B—N2B—C4B—C5B | 130.93 (10) |
N2A—C4A—C7A—O2A | −25.90 (14) | C7B—C4B—C5B—C6B | 63.36 (12) |
N2A—C4A—C5A—C6A | −54.93 (13) | N2B—C4B—C7B—O3B | 143.59 (9) |
C4A—N2A—C3A—O1A | −9.05 (15) | C5B—C4B—C7B—O3B | −94.58 (11) |
N1A—C1A—C3A—O1A | −9.35 (13) | C5B—C4B—C7B—O2B | 83.64 (11) |
C2A—C1A—C3A—O1A | 110.94 (12) | N1C—C1C—C3C—N2C | 172.27 (9) |
C2A—C1A—C3A—N2A | −68.21 (12) | C1C—C3C—N2C—C4C | −171.04 (9) |
C3A—N2A—C4A—C5A | 160.88 (9) | C3C—N2C—C4C—C7C | −96.62 (11) |
C7A—C4A—C5A—C6A | −179.00 (10) | N2C—C4C—C7C—O2C | −65.36 (11) |
N2A—C4A—C7A—O3A | 156.20 (10) | N2C—C4C—C5C—C6C | −62.38 (12) |
C5A—C4A—C7A—O3A | −80.88 (12) | C4C—N2C—C3C—O1C | 7.70 (16) |
C5A—C4A—C7A—O2A | 97.02 (12) | N1C—C1C—C3C—O1C | −6.53 (13) |
N1B—C1B—C3B—N2B | 170.04 (9) | C2C—C1C—C3C—O1C | 116.33 (11) |
C1B—C3B—N2B—C4B | 179.71 (9) | C2C—C1C—C3C—N2C | −64.88 (12) |
C3B—N2B—C4B—C7B | −106.46 (11) | C3C—N2C—C4C—C5C | 140.39 (10) |
N2B—C4B—C7B—O2B | −38.19 (12) | C7C—C4C—C5C—C6C | 174.13 (10) |
N2B—C4B—C5B—C6B | −173.87 (9) | N2C—C4C—C7C—O3C | 116.42 (10) |
C4B—N2B—C3B—O1B | 1.13 (16) | C5C—C4C—C7C—O3C | −121.50 (11) |
N1B—C1B—C3B—O1B | −11.32 (13) | C5C—C4C—C7C—O2C | 56.72 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1A···O3Ci | 0.952 (15) | 1.868 (15) | 2.7921 (12) | 163.0 (13) |
N1A—H2A···O2Cii | 0.890 (14) | 1.934 (15) | 2.8054 (12) | 165.6 (12) |
N1A—H3A···O2Ciii | 0.910 (16) | 1.912 (16) | 2.7834 (13) | 159.7 (13) |
N2A—H4A···O3Aiv | 0.834 (15) | 2.067 (15) | 2.8945 (13) | 171.8 (13) |
N1B—H1B···O1Bv | 0.896 (14) | 1.963 (15) | 2.8327 (13) | 163.3 (13) |
N1B—H2B···O1W | 0.898 (16) | 2.001 (15) | 2.7864 (14) | 145.3 (12) |
N1B—H3B···O2Aiv | 0.950 (14) | 1.820 (14) | 2.7446 (12) | 163.4 (12) |
N2B—H4B···O3Biv | 0.855 (15) | 2.053 (15) | 2.9056 (12) | 175.2 (13) |
N1C—H1C···O3Biv | 0.944 (14) | 1.805 (14) | 2.7403 (12) | 170.7 (12) |
N1C—H2C···O2B | 0.918 (16) | 2.119 (14) | 2.8619 (12) | 137.3 (11) |
N1C—H3C···O2Bi | 0.837 (14) | 1.929 (14) | 2.7573 (12) | 170.1 (14) |
N2C—H4C···O3Civ | 0.874 (15) | 1.995 (15) | 2.8539 (12) | 167.2 (12) |
O1W—H1W···O2A | 0.82 (2) | 1.97 (2) | 2.7835 (14) | 171.1 (18) |
O1W—H2W···O3Aiv | 0.84 (2) | 1.93 (2) | 2.7548 (12) | 168.1 (17) |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) x, y, z−1; (iii) −x+1, y−1/2, −z+1; (iv) x, y+1, z; (v) −x+2, y+1/2, −z+1. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | C7H14N2O3 | C7H14N2O3·0.33H2O |
Mr | 174.20 | 180.21 |
Crystal system, space group | Tetragonal, I4 | Monoclinic, P21 |
Temperature (K) | 105 | 105 |
a, b, c (Å) | 17.9290 (12), 17.9290 (12), 5.2196 (5) | 15.4292 (5), 5.4602 (2), 18.1320 (6) |
α, β, γ (°) | 90, 90, 90 | 90, 113.505 (1), 90 |
V (Å3) | 1677.8 (2) | 1400.81 (8) |
Z | 8 | 6 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.11 | 0.10 |
Crystal size (mm) | 0.65 × 0.12 × 0.05 | 1.30 × 0.12 × 0.08 |
Data collection | ||
Diffractometer | Bruker SMART CCD area-detector diffractometer | Siemens SMART CCD area-detector diffractometer |
Absorption correction | Empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | Empirical (using intensity measurements) (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.932, 0.995 | 0.876, 0.992 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5085, 1029, 1001 | 19775, 10606, 7926 |
Rint | 0.041 | 0.030 |
(sin θ/λ)max (Å−1) | 0.641 | 0.806 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.079, 0.180, 1.27 | 0.037, 0.074, 0.94 |
No. of reflections | 1029 | 10606 |
No. of parameters | 121 | 406 |
No. of restraints | 13 | 1 |
H-atom treatment | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement |
w = 1/[σ2(Fo2) + (0.0203P)2 + 13.6465P] where P = (Fo2 + 2Fc2)/3 | w = 1/[σ2(Fo2) + (0.0371P)2] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 0.36, −0.39 | 0.33, −0.27 |
Absolute structure | ? | Flack (1983), with 3916 Friedel pairs |
Absolute structure parameter | ? | −0.6 (4) |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SAINT, SHELXTL (Bruker, 2000), SHELXTL.
O1—C4 | 1.230 (7) | N1—C1 | 1.497 (7) |
O2—C7 | 1.265 (7) | N2—C4 | 1.351 (7) |
O3—C7 | 1.233 (8) | ||
O3—C7—C5 | 119.0 (6) | O2—C7—C5 | 116.4 (6) |
N1—C1—C4—N2 | 171.6 (5) | N2—C5—C7—O2 | −71.7 (7) |
C1—C4—N2—C5 | 176.5 (5) | N1—C1—C2—C31 | 79.1 (8) |
C4—N2—C5—C7 | −114.3 (6) | N1—C1—C2—C32 | −81.8 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3i | 0.92 | 1.99 | 2.846 (7) | 154 |
N1—H2···O2ii | 0.92 | 1.90 | 2.787 (7) | 160 |
N1—H3···O2iii | 0.92 | 1.89 | 2.804 (6) | 170 |
N2—H4···O3iv | 0.86 | 2.00 | 2.856 (7) | 177 |
C1—H11···O1iv | 0.98 | 2.45 | 3.316 (7) | 147 |
Symmetry codes: (i) −y+1, x−1, z+1; (ii) −y+1, x−1, z; (iii) y+1/2, −x+1/2, z+1/2; (iv) x, y, z+1. |
O1A—C3A | 1.2255 (14) | N1B—C1B | 1.4946 (14) |
O2A—C7A | 1.2672 (14) | N2B—C3B | 1.3301 (13) |
O3A—C7A | 1.2482 (14) | O1C—C3C | 1.2298 (13) |
N1A—C1A | 1.4923 (14) | O2C—C7C | 1.2624 (13) |
N2A—C3A | 1.3492 (14) | O3C—C7C | 1.2503 (14) |
O1B—C3B | 1.2444 (13) | N1C—C1C | 1.4945 (13) |
O2B—C7B | 1.2592 (13) | N2C—C3C | 1.3394 (13) |
O3B—C7B | 1.2539 (13) | ||
O2A—C7A—C4A | 117.96 (10) | O2C—C7C—C4C | 117.90 (9) |
O3A—C7A—C4A | 116.28 (9) | O3C—C7C—C4C | 118.00 (9) |
O2B—C7B—C4B | 117.25 (9) | H1W—O1W—H2W | 105.8 (17) |
O3B—C7B—C4B | 117.58 (9) | ||
N1A—C1A—C3A—N2A | 171.50 (8) | N2B—C4B—C7B—O2B | −38.19 (12) |
C1A—C3A—N2A—C4A | 170.07 (9) | N2B—C4B—C5B—C6B | −173.87 (9) |
C3A—N2A—C4A—C7A | −77.26 (12) | N1C—C1C—C3C—N2C | 172.27 (9) |
N2A—C4A—C7A—O2A | −25.90 (14) | C1C—C3C—N2C—C4C | −171.04 (9) |
N2A—C4A—C5A—C6A | −54.93 (13) | C3C—N2C—C4C—C7C | −96.62 (11) |
N1B—C1B—C3B—N2B | 170.04 (9) | N2C—C4C—C7C—O2C | −65.36 (11) |
C1B—C3B—N2B—C4B | 179.71 (9) | N2C—C4C—C5C—C6C | −62.38 (12) |
C3B—N2B—C4B—C7B | −106.46 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1A···O3Ci | 0.952 (15) | 1.868 (15) | 2.7921 (12) | 163.0 (13) |
N1A—H2A···O2Cii | 0.890 (14) | 1.934 (15) | 2.8054 (12) | 165.6 (12) |
N1A—H3A···O2Ciii | 0.910 (16) | 1.912 (16) | 2.7834 (13) | 159.7 (13) |
N2A—H4A···O3Aiv | 0.834 (15) | 2.067 (15) | 2.8945 (13) | 171.8 (13) |
N1B—H1B···O1Bv | 0.896 (14) | 1.963 (15) | 2.8327 (13) | 163.3 (13) |
N1B—H2B···O1W | 0.898 (16) | 2.001 (15) | 2.7864 (14) | 145.3 (12) |
N1B—H3B···O2Aiv | 0.950 (14) | 1.820 (14) | 2.7446 (12) | 163.4 (12) |
N2B—H4B···O3Biv | 0.855 (15) | 2.053 (15) | 2.9056 (12) | 175.2 (13) |
N1C—H1C···O3Biv | 0.944 (14) | 1.805 (14) | 2.7403 (12) | 170.7 (12) |
N1C—H2C···O2B | 0.918 (16) | 2.119 (14) | 2.8619 (12) | 137.3 (11) |
N1C—H3C···O2Bi | 0.837 (14) | 1.929 (14) | 2.7573 (12) | 170.1 (14) |
N2C—H4C···O3Civ | 0.874 (15) | 1.995 (15) | 2.8539 (12) | 167.2 (12) |
O1W—H1W···O2A | 0.82 (2) | 1.97 (2) | 2.7835 (14) | 171.1 (18) |
O1W—H2W···O3Aiv | 0.84 (2) | 1.93 (2) | 2.7548 (12) | 168.1 (17) |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) x, y, z−1; (iii) −x+1, y−1/2, −z+1; (iv) x, y+1, z; (v) −x+2, y+1/2, −z+1. |
Subscribe to Acta Crystallographica Section C: Structural Chemistry
The full text of this article is available to subscribers to the journal.
- Information on subscribing
- Sample issue
- Purchase subscription
- Reduced-price subscriptions
- If you have already subscribed, you may need to register
Recent investigations into the structures of dipeptides with two hydrophobic residues (Ala, Val, Leu, Ile or Phe; the stereochemical indicator L is common to all residues discussed in this paper and so is omitted) have revealed a diverse set of hydrogen-bond and crystal-packing arrangements [see Görbitz (2002a) for an overview and a complete set of references]. Some patterns, however, recur in two or more structures. One example is the hexagonally symmetric hydrophobic columns with empty central channels first observed for Val-Ala (Görbitz & Gundersen, 1996), which were subsequently found not only for the retroanalogue Ala-Val (Görbitz, 2002b), but also for a series of other dipeptides containing Ala, Val and Ile residues (Görbitz, 2003). Finding such stable motifs is a key element in establishing peptides as useful model molecules for the design of materials by crystal engineering (Desiraju, 2001).
The size of the pores in a Val-Ala class structure is inversely related to the bulk of the two side chains. Val-Ala (Görbitz & Gundersen, 1996) and Ala-Val (Görbitz, 2002b) possess the largest known pores, with diameters of around 5 Å. Both these dipeptides have a total of four side-chain C atoms. In order to see if still larger pores could be attained by reducing the number of side-chain C atoms to three, a crystal structure investigation was undertaken for the two title compounds, N-(L-2-aminobutyryl)-L-alanine or Abu-Ala, (I) (Fig. 1), and 2-(L-alanylamino)-L-butyric acid 0.33-hydrate or Ala-Abu, (II) (Fig. 2). As for a further reduction of the number of side-chain C atoms to two, the structure of Ala-Ala (Fletterick et al., 1971) is the only peptide structure in the Cambridge Structural Database (Version?; Allen & Kennard, 1993) with tetragonal symmetry, and is not a member of the Val-Ala class. \sch
The crystal packing of (I) is shown together with that of Ala-Ala (Fletterick et al., 1971) in Fig. 3. The two structures are almost indistinguishable, except that the empty central channels of the Ala1 hydrophobic columns in Ala-Ala are filled by Abu2 Cγ methyl groups in (I). The calculated density for (I) (1.379 Mg m-3) is well above the value of 1.276 Mg m-3 for Ala-Ala (Fletterick et al., 1971), which used to be the highest value observed for a hydrophobic dipeptide.
The peptide main chain of (I) is in an extended conformation (Fig. 1) and the bond lengths and angles are normal. To avoid steric conflict, there is a 1:1 disorder for the Abu side chain (Fig. 4). The somewhat unusual torsion angles associated with the two alternative orientations, -81.8 (7) and 79.1 (8)° (Table 1), have the curious effect of putting the two Cγ methyl positions on top of each other when viewed along the c axis, as in Fig. 3. The shortest intermolecular H···H contacts between the four molecules related by fourfold symmetry is 2.44 Å, while H···H contacts between quartets related by translation along the c axis start at 2.80 Å. As for Ala-Ala, the tetragonal symmetry renders possible the formation of three strong –NH3+···-OOC– hydrogen bonds (Table 2), which set these two structures apart from all other structures of hydrophobic dipeptides.
As is evident from Fig. 3, the columns formed by Ala2 in the Ala-Ala structure (Fletterick et al., 1971) are more densely packed than the Ala1 columns. Compared with (I), it thus seemed less likely that (II) would retain an Ala-Ala class structure. Indeed, Fig. 5 shows a completely new type of packing pattern that combines elements from the Ala-Ala class, such as the separation of residue 1 and residue 2 side chains into independent columns, with elements from the Val-Ala class, such as the pseudohexagonal arrangement of Ala1 columns around Abu2 columns. A unique feature of (II) is a co-crystallized water molecule that is essential for completing the hydrogen-bond network in the crystal. The result is a well defined structure with Dx = 1.282 Mg m-3.
The three peptide molecules in the asymmetric unit of (II) are in extended conformations with normal bond lengths and angles, and are not related by pseudosymmetry. They differ mainly in the orientation of the Abu side chain, which is trans for molecule B but gauche for A and C (Fig. 2 and Table 4). The observation of Z' = 3 is actually quite rare for peptides, and only eight other examples were found in the Cambridge Structural Database (Version?; Allen & Kennard, 1993).
In conclusion, since neither (I) nor (II) form Val-Ala class structures, the largest known hydrophobic pores still occur in the structures of Val-Ala (Görbitz & Gundersen, 1996) and Ala-Val (Görbitz, 2002b).