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A first preliminary report on the crystal structure of a hydrated salt formulated as [Ge(taci)2]Cl4·13H2O (taci is 1,3,5-tri­amino-1,3,5-tride­oxy-cis-inositol) appeared more than 20 years ago [Ghisletta (1994). PhD thesis, ETH Zürich. Switzerland]. At that time it was not possible to discriminate unambiguously between the positions of some of the chloride ions and water O atoms, and disorder was thus postulated. In a new determination, a conclusive scheme of hydrogen bonding proves to be a particularly appealing aspect of the structure. Single crystals of the title compound, C12H30GeN6O64+·4Cl·6H2O or [Ge(taci)2]2Cl8·12H2O, were grown from an aqueous solution by slow evaporation of the solvent. The two [Ge(taci)2]4+ cations exhibit a double-adamantane-type structure with exclusive O-atom coordination and approximate D3d symmetry. The taci ligands adopt a zwitterionic form with deprotonated hy­droxy groups and protonated amino groups. Both cations are hydrogen bonded to six water mol­ecules. The structure of the hydration shell of the two cations is, however, slightly different. The {[Ge(taci)2]·6H2O}4+ aggregates are inter­linked in all three dimensions by further hydrogen bonds of the types N—H...Cl...H—N, N—H...O(H)2...H—N, (Ge)O...H—O(H)...H—N, N—H...O(H)—H...Cl...H—N, (Ge)O...H—O—H...Cl...H—N, N—H...O(H)—H...Cl...H—(H)O...H—N, (Ge)O...H—O—H...Cl...H—(H)O...H—N and Ge(O)...H—O—H...Cl...H—O—H...O(Ge).

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229615023165/fp3019sup1.cif
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229615023165/fp3019Isup2.hkl
Contains datablock I

CCDC reference: 1440044

Introduction top

A first preliminary report on the crystal structure of a hydrated salt formulated as [Ge(taci)2]Cl4.13H2O (taci = 1,3,5-tri­amino-1,3,5-tri­deoxy-cis-inositol) appeared more than 20 years ago (Ghisletta, 1994). However, at that time, structure elucidation remained unsatisfactory. It was not possible to discriminate unambiguously between the positions of some of the chloride ions and water O atoms. As a consequence, a disorder was postulated, with an occupation of these positions by the two atom types at random. This artifact is particularly regrettable, because a conclusive scheme of hydrogen bonding, which is – as we shall show in this contribution – a particularly appealing aspect of the structure, could not be elucidated. We therefore regrew single crystals of this complex, following Ghisletta's protocol, and repeated the structure elucidation at low temperature. In agreement with Ghisletta's description, the structure could again be solved and refined in the triclinic centrosymmetric space group P1. However, in contrast to the previous investigation, where only one position for the [Ge(taci)2]4+ cation has been considered, we encountered two crystallographically independent Ge-atom positions, both located on a centre of inversion. In addition, the amount of hydration appeared to be smaller and we formulate the new structure as [Ge(taci)2]2Cl8.12H2O. The new attempt now allowed an unambiguous discrimination between O atom and chloride anion positions. Consequently, a complete resolution of the structure without any disorder proved possible.

Experimental top

Synthesis and crystallization top

1,3,5-Tri­amino-1,3,5-tri­deoxy-cis-inositol (taci) was prepared as described by Hegetschweiler et al. (1990). The title compound, i.e. [Ge(taci)2]2Cl8.12H2O, was prepared by combining solutions of GeCl4 (0.50 g, 2.33 mmol in 5 ml of MeOH) and taci (0.82 g, 4.63 mmol in 25 ml of MeOH) following the protocol given by Ghisletta (1994). Colourless single crystals suitable for X-ray analysis were grown from an aqueous solution by slow evaporation at ambient temperature. 1H NMR (D2O): δ 4.53, 3.53; 13C NMR (D2O): δ 75.3, 54.7.

The crystals effloresce under ambient conditions when exposed to the air and lose two of the six equivalents of water, forming the terahydrate [Ge(taci)2]Cl4.4H2O. Elemental analysis calculated (%) for C12H38Cl4GeN6O10: C 22.49, H 5.98, Cl 22.13, Ge 11.33, N, 13.11; found: C 22.52, H 5.69, Cl 22.62, Ge 11.25, N, 12.80. Ge was determined by ICP–MS (inductively coupled plasma mass spectrometry) and Cl was determined by argentometric titrations.

Refinement top

Crystal data, data collection and structure refinement details are summarized in Table 1. All H atoms were located in a difference Fourier map and were treated as recommended by Müller et al. (2006). A riding model was used for the C-bonded H atoms. The positional parameters of the O- and N-bonded H atoms were refined using isotropic displacement parameters which were set at 1.5×Ueq of the pivot atom. In addition, restraints of 0.84 and 0.88 Å were used for the O—H and N—H bond lengths, respectively.

Results and discussion top

In general, no significant difference in geometry has been noted for the two crystallographically independent [Ge(taci)2]4+ units of the title compound, (I). In agreement with Ghisletta's findings, the two ligand moieties coordinate exclusively via O-atom donors, forming a double-adamantane-type skeleton with approximate D3d symmetry. The hy­droxy H atoms were all transferred to the amino groups, which act as inter­nal bases. It has frequently been proposed that the adoption of such a zwitterionic form contributes in particular to a high stability: It allows binding of the GeIV centre to six highly nucleophilic alkoxo groups without any necessity for a deprotonation of the complex as a whole by an external base (Hegetschweiler, 1999).

Only two examples of complexes with a tetra­valent centre, exhibiting such a zwitterionic bis-taci-type skeleton have structurally been characterized: [V(taci)2]4+ and [V(tdci)2]4+ (Morgenstern et al., 2004; tdci = 1,3,5-tri­deoxy-1,3,5-tris­(di­methyl­amino)-cis-inositol). The molecular structure of these complexes resembles the [Ge(taci)2]4+ cations of the title compound quite closely. A similar double-adamantane skeleton with exclusive O-atom coordination has also been observed for [Al(taci)2]3+, [Cr(taci)2]3+ and a series of corresponding tdci complexes with Al3+, Fe3+, Ga3+ and In3+ (Hegetschweiler, 1999). The two GeO6 polyhedra of (I) revealed, however, some structural peculiarities, which have not been mentioned in any of the previous reports. In the Ge complex, the mean intra­ligand O···O separation [2.707(?) Å for Ge1 and 2.686(?) Å for Ge2] is slightly larger than the mean inter­ligand separation [2.638(?) Å for Ge1 and 2.643(?) Å for Ge2]. In addition, close inspection of the individual O···O distances exhibits the presence of a pseudo-mirror plane within error limits (Fig. 1). Together with the crystallographically imposed centre of inversion, the molecular symmetry of the two complexes adds up to C2h. Although small, the deviation from the expected D3d symmetry is significant. It is observed for both cations, although they are embedded in different environments. Therefore, it is not conclusive to explain this distortion simply by a specific packing. It is noteworthy that the O···O distances are all substanti­ally shorter than the sum of the van der Waals radii of two O atoms (3.14 Å). Moreover, the intra­molecular distances are also significantly shorter than in the free ligand or in its protonation products Hntacin+ (Neis & Hegetschweiler, 2014), where the O···O separations range from 2.9 to 3.1 Å, or from 2.7 to 2.8 Å if an intra­molecular hydrogen bond is formed. In terms of simple VSEPR (valence shell electron pair repulsion) considerations, one would expect strict Oh symmetry for an unstrained GeO6 moiety. Regarding some negative charges on the alkoxo donors, enhanced ligand–ligand repulsion should result in an increase of inter­ligand O···O distances (Hegetschweiler et al., 1995). As a matter of fact, in all our previous investigations, inter­ligand O···O separations have been found to be larger than corresponding intra­ligand distances throughout. It appears thus that the GeIV centre might be too small to fit unconstrainedly in the cavity, formed by the six O atoms of two taci molecules. Such an assumption is further supported by a strong puckering of the cyclo­hexane rings. Puckering parameters were calculated according to Cremer & Pople, 1975): Q = 0.627 Å, θ = 1.62 ° and φ = 274.74 ° (for Ge1), and Q = 0.641 Å, θ = 1.20 ° and φ = 306.73 ° (for Ge2). These values confirm a pure chair conformation for both cations, however, the value of the total puckering amplitude Q is significantly larger in comparison to the free taci, its protonation products or metal complexes (Neis & Hegetschweiler, 2014; Neis et al., 2014). Inter­estingly, the Ge—O bonds appear, however, not to be widened. The Cambridge Structural Database (CSD, Version ???; Groom & Allen 2014) contains only one entry for GeIV bonded to six alkoxo donors for comparison. It is a complex of a deprotonated β-cyclo­dextrine reported by Benner et al. (2006), with a mean Ge—O bond length of 1.914 Å.

In recent times, we spent particular attention to the hydrogen-bonding properties of taci, its protonation products and its metal complexes (Neis & Hegetschweiler, 2014). These studies have shown that R—O—H···NH2R' inter­actions are observed quite frequently and, the pairing of two OH—CH—CH—NH2-groups appears to be a particularly favoured motif. In terms of graph-set analysis (Bernstein et al., 1995), such a pattern receives the descriptor R22(10). In (I), the chloride anions and the alkoxo groups are potential acceptors and the ammonium groups potential donors, whereas the water molecules may undergo both donating and accepting inter­actions. Among them, the ammonium group represents the strongest donor and the coordinated alkoxo group the strongest acceptor. However, no N—H···Oalkoxo inter­actions have been observed in the structure of (I). Instead, inter­connection of [Ge(taci)2]4+ cations is mediated via water molecules and chloride counter-ions. With respect to the approximate D3d symmetry of the [Ge(taci)2]4+ cation, the ammonium groups all adopt an orientation with one N—H bond in an axial orientation and the other two in equatorial orientations. The two equatorial N—H bonds point to the outside of the molecule (Fig. 2). The axial N—H protons point, however, towards an alkoxo O atom. Despite an N···O distance of 2.8–2.9 Å between such a vicinal ammonium–alkoxo group, the small N—H···O angle (<110 °) precludes an inter­pretation as intra­molecular hydrogen bonding.

Both cations are surrounded by six water molecules. In cations of Ge2, all these water molecules accept an axial N—H hydrogen and donate an H atom to a coordinated alkoxo group of the opposite ligand. This inter­action (denoted type-A) results in the formation of a nine-membered N—H···O(H)—H···O—Ge—O—C—C ring. The cations of Ge1, however, exhibit only four such type-A inter­actions. The remaining two water molecules (O5W) also accept an axial N2—H hydrogen but donate an H atom to a coordinated alkoxo group (O1) of the same ligand moiety. This inter­action (denoted type-B) results in the formation of a seven-membered N—H···O(H)—H···O—C—C ring. Moreover, the axial N—H hydrogen of the type-B inter­action is bifurcated, forming an additional hydrogen bond to O4W, which in turn represents again a type-A inter­action (Fig. 2a). As a consequence, the remaining axial N—H hydrogen at atom N4 is not involved in this particular hydration scheme. Type-A inter­actions have been observed previously in other taci complexes with such a zwitterionic form (Hegetschweiler et al., 1995), whereas type-B inter­actions have not been reported yet. The specific structure of the taci ligand together with the characteristic hydration shell of the cations resulted in a strongly dipolar shape of the entire aggregate with two hydro­phobic poles (the C6H6 frames) and a hydro­philic belt. Inter­connection of these hydrated cations emerges mainly via inter­molecular hydrogen bonding (Table 2) between the hydro­philic belts of neighbouring complex molecules either with or without participation of the chloride counter-ions. The following inter­actions are observed:

(i): N—H···Cl···H—N;

(ii): N—H···O(H)2···H—N, together with Oalkoxo···H(OH)···H—N;

(iii): N—H···O(H)—H···Cl···H—N, together with Oalkoxo···H—O—H···Cl···H—N;

(iv): N—H···O(H)—H···Cl···H—(H)O···H—N, together with Oalkoxo···H—O—H···Cl···H—(H)O···H—N and Oalkoxo···H—O—H···Cl···H—O—H···Oalkoxo.

Cations of Ge1 are inter­connected via inter­action types (i), (ii) and (iii), forming chains along the crystallographic a axis. Additional type (i) inter­linking along the b axis generates layers, which are oriented parallel to the ab plane (Fig. 3a). Similarly, the cations of Ge2 form chains along the a axis via inter­action types (i), (ii) and (iv). Further inter­linking by type (i) hydrogen bonds along b results again in the formation of layers parallel to the ab plane (Fig. 3b). Finally, inter­linking of the two different cationic species (Ge1 and Ge2) by all four inter­action types constitutes layers oriented parallel to the bc plane (Fig. 3c). The four inter­action types give rise to the formation of a variety of different cyclic patterns. Some of them are displayed in Fig. 4. The first example (Fig. 4a) shows the direct inter­linking of [Ge1(taci)2](H2O)64+ aggregates via type-B-bonded H2O molecules. In terms of a graph-set description, the type-B binding comprises two individual finite hydrogen bonds and the corresponding first-level (N1) descriptor is DD. The cyclic nature of this arrangement becomes evident from the second level (N2) analysis with the descriptor R22(7). This pattern is further extended to chains of the type C12(9) along the a axis considering the additional hydrogen bond from O3W to O7, and the combination of two symmetry-related C12(9) patterns finally constitute large rings of the type R42(24). The inter­linking of type-A-bonded water molecules, as observed for Ge2, takes place by a somewhat different mechanism (Fig. 4b). Again, the type-A binding comprises two finite hydrogen bonds (N1: DD). The emerging ring pattern (N2) is, however, R22(9). The formation of C12(9) chains follows again from the additional hydrogen bonding (O3W···O7) to a neighbouring cation, and the combination of symmetry-related C12(9) chains generates R42(8) and (more complex) R44(24) rings. It has been pointed out by Bernstein et al. that the R42(8) pattern is quite common for hydrogen bonding and is observed in a variety of different structures. The archetypal nature of the R42(8) pattern is also evident in the title compound. It is not only found for the abovementioned Ge2-cation···water inter­linking along [100] (Fig. 4b), but also for the cation–chloride inter­actions of Ge1 along [110] (Fig. 4c). Further cyclic patterns containing ammonium groups and chloride anions with larger rings are obtained as some parts of the ligand skeleton is included within the loop. Fig. 4(d) shows the alignment of Ge1 along the b axis, forming R42(16)-rings, whereas connection of the Ge1 cations along the a axis is not only mediated via water molecules (Fig. 4a), but also via chloride anions (Fig. 4e), forming R42(12) and large R43(24) patterns. The latter are again obtained by combining two symmetry-related R42(12) motifs within the Ge1···Ge1 chain. Finally, even more complex structures evolve, if both H2O and Cl- are included within the cycle. Such an example, comprising two chloride anions and four water molecules, adding up to R86(22) (for a loop via N—H···OH2) or R86(20) (for a loop via H—O—H···Oalkoxo) is shown for the Ge2···Ge2 inter­action along the b axis in Fig. 4(f).

With regard to the counter-ions (Fig. 5), Cl1 accepts one N—H and four H—O (water) hydrogens, thus having a coordination number of five. It is engaged by the inter­connection from three cations (two Ge2 and one Ge1). Cl2 accepts three N—H hydrogens from three cations (two Ge1 and one Ge2), Cl3 accepts four N—H hydrogens from four cations (three Ge2 and one Ge1) and Cl4 accepts three N—H hydrogens and one water H atom, inter­linking three cations of Ge1. As can be seen in Fig. 5, the geometry of the corresponding Cl1H5, Cl2H3, Cl3H4 and Cl4H4 polyhedra is strongly irregular throughout.

Conclusions top

The title compound exhibits a remarkably complex three-dimensional network of hydrogen bonds. Although a waste variety of different types of inter­actions are formed, direct taci–taci contacts, such as N—H···Oalkoxo, are not observed. It is obvious that bis-taci complexes with a zwitterionic form of the ligand display a completely different behaviour than the free ligand, its protonation products and metal complexes with the ligand in a nonzwitterionic form (Neis et al., 2014). In addition, no direct inter­actions between the hydro­phobic poles of the [Ge(taci)2]4+ cations in the form of C—H···H—C van der Waals contacts are observed. As can be seen in Figs. 3(b) and 3(c), the nearest neighbours of the hydro­phobic poles are either water molecules or chloride ions, with H···O distances around 2.5 Å and H···Cl distances in the range from 2.6–2.8 Å. It remains questionable whether these inter­actions could be regarded as additional weak C—H···X hydrogen bonds. Inspection of this structure also supports the conclusion that simple electrostatic inter­actions contribute extensively to its stability. The non-observance of direct N—H···Oalkoxo inter­actions could be explained by the considerable Coulombic repulsion between the fourfold cations. On the other hand, cation–anion attraction, which of course results in a general Madelung-type stabilization, is directly visible (Fig. 5d), displaying a `salt bridge' with an ammonium group (N8) where all three H atoms (N8) are directed towards Cl4 [N8···Cl4 separation = 3.2(?) Å]. It is also noteworthy that in contrast to the well balanced pairing of vicinal HO—CH—CH—NH2 groups mentioned above, the hydrogen-bonding scheme in the title compound remains unbalanced. One of the water H atoms (H3W—O2W), as an example, remains without an acceptor (Fig. 3c).

Structure description top

A first preliminary report on the crystal structure of a hydrated salt formulated as [Ge(taci)2]Cl4.13H2O (taci = 1,3,5-tri­amino-1,3,5-tri­deoxy-cis-inositol) appeared more than 20 years ago (Ghisletta, 1994). However, at that time, structure elucidation remained unsatisfactory. It was not possible to discriminate unambiguously between the positions of some of the chloride ions and water O atoms. As a consequence, a disorder was postulated, with an occupation of these positions by the two atom types at random. This artifact is particularly regrettable, because a conclusive scheme of hydrogen bonding, which is – as we shall show in this contribution – a particularly appealing aspect of the structure, could not be elucidated. We therefore regrew single crystals of this complex, following Ghisletta's protocol, and repeated the structure elucidation at low temperature. In agreement with Ghisletta's description, the structure could again be solved and refined in the triclinic centrosymmetric space group P1. However, in contrast to the previous investigation, where only one position for the [Ge(taci)2]4+ cation has been considered, we encountered two crystallographically independent Ge-atom positions, both located on a centre of inversion. In addition, the amount of hydration appeared to be smaller and we formulate the new structure as [Ge(taci)2]2Cl8.12H2O. The new attempt now allowed an unambiguous discrimination between O atom and chloride anion positions. Consequently, a complete resolution of the structure without any disorder proved possible.

In general, no significant difference in geometry has been noted for the two crystallographically independent [Ge(taci)2]4+ units of the title compound, (I). In agreement with Ghisletta's findings, the two ligand moieties coordinate exclusively via O-atom donors, forming a double-adamantane-type skeleton with approximate D3d symmetry. The hy­droxy H atoms were all transferred to the amino groups, which act as inter­nal bases. It has frequently been proposed that the adoption of such a zwitterionic form contributes in particular to a high stability: It allows binding of the GeIV centre to six highly nucleophilic alkoxo groups without any necessity for a deprotonation of the complex as a whole by an external base (Hegetschweiler, 1999).

Only two examples of complexes with a tetra­valent centre, exhibiting such a zwitterionic bis-taci-type skeleton have structurally been characterized: [V(taci)2]4+ and [V(tdci)2]4+ (Morgenstern et al., 2004; tdci = 1,3,5-tri­deoxy-1,3,5-tris­(di­methyl­amino)-cis-inositol). The molecular structure of these complexes resembles the [Ge(taci)2]4+ cations of the title compound quite closely. A similar double-adamantane skeleton with exclusive O-atom coordination has also been observed for [Al(taci)2]3+, [Cr(taci)2]3+ and a series of corresponding tdci complexes with Al3+, Fe3+, Ga3+ and In3+ (Hegetschweiler, 1999). The two GeO6 polyhedra of (I) revealed, however, some structural peculiarities, which have not been mentioned in any of the previous reports. In the Ge complex, the mean intra­ligand O···O separation [2.707(?) Å for Ge1 and 2.686(?) Å for Ge2] is slightly larger than the mean inter­ligand separation [2.638(?) Å for Ge1 and 2.643(?) Å for Ge2]. In addition, close inspection of the individual O···O distances exhibits the presence of a pseudo-mirror plane within error limits (Fig. 1). Together with the crystallographically imposed centre of inversion, the molecular symmetry of the two complexes adds up to C2h. Although small, the deviation from the expected D3d symmetry is significant. It is observed for both cations, although they are embedded in different environments. Therefore, it is not conclusive to explain this distortion simply by a specific packing. It is noteworthy that the O···O distances are all substanti­ally shorter than the sum of the van der Waals radii of two O atoms (3.14 Å). Moreover, the intra­molecular distances are also significantly shorter than in the free ligand or in its protonation products Hntacin+ (Neis & Hegetschweiler, 2014), where the O···O separations range from 2.9 to 3.1 Å, or from 2.7 to 2.8 Å if an intra­molecular hydrogen bond is formed. In terms of simple VSEPR (valence shell electron pair repulsion) considerations, one would expect strict Oh symmetry for an unstrained GeO6 moiety. Regarding some negative charges on the alkoxo donors, enhanced ligand–ligand repulsion should result in an increase of inter­ligand O···O distances (Hegetschweiler et al., 1995). As a matter of fact, in all our previous investigations, inter­ligand O···O separations have been found to be larger than corresponding intra­ligand distances throughout. It appears thus that the GeIV centre might be too small to fit unconstrainedly in the cavity, formed by the six O atoms of two taci molecules. Such an assumption is further supported by a strong puckering of the cyclo­hexane rings. Puckering parameters were calculated according to Cremer & Pople, 1975): Q = 0.627 Å, θ = 1.62 ° and φ = 274.74 ° (for Ge1), and Q = 0.641 Å, θ = 1.20 ° and φ = 306.73 ° (for Ge2). These values confirm a pure chair conformation for both cations, however, the value of the total puckering amplitude Q is significantly larger in comparison to the free taci, its protonation products or metal complexes (Neis & Hegetschweiler, 2014; Neis et al., 2014). Inter­estingly, the Ge—O bonds appear, however, not to be widened. The Cambridge Structural Database (CSD, Version ???; Groom & Allen 2014) contains only one entry for GeIV bonded to six alkoxo donors for comparison. It is a complex of a deprotonated β-cyclo­dextrine reported by Benner et al. (2006), with a mean Ge—O bond length of 1.914 Å.

In recent times, we spent particular attention to the hydrogen-bonding properties of taci, its protonation products and its metal complexes (Neis & Hegetschweiler, 2014). These studies have shown that R—O—H···NH2R' inter­actions are observed quite frequently and, the pairing of two OH—CH—CH—NH2-groups appears to be a particularly favoured motif. In terms of graph-set analysis (Bernstein et al., 1995), such a pattern receives the descriptor R22(10). In (I), the chloride anions and the alkoxo groups are potential acceptors and the ammonium groups potential donors, whereas the water molecules may undergo both donating and accepting inter­actions. Among them, the ammonium group represents the strongest donor and the coordinated alkoxo group the strongest acceptor. However, no N—H···Oalkoxo inter­actions have been observed in the structure of (I). Instead, inter­connection of [Ge(taci)2]4+ cations is mediated via water molecules and chloride counter-ions. With respect to the approximate D3d symmetry of the [Ge(taci)2]4+ cation, the ammonium groups all adopt an orientation with one N—H bond in an axial orientation and the other two in equatorial orientations. The two equatorial N—H bonds point to the outside of the molecule (Fig. 2). The axial N—H protons point, however, towards an alkoxo O atom. Despite an N···O distance of 2.8–2.9 Å between such a vicinal ammonium–alkoxo group, the small N—H···O angle (<110 °) precludes an inter­pretation as intra­molecular hydrogen bonding.

Both cations are surrounded by six water molecules. In cations of Ge2, all these water molecules accept an axial N—H hydrogen and donate an H atom to a coordinated alkoxo group of the opposite ligand. This inter­action (denoted type-A) results in the formation of a nine-membered N—H···O(H)—H···O—Ge—O—C—C ring. The cations of Ge1, however, exhibit only four such type-A inter­actions. The remaining two water molecules (O5W) also accept an axial N2—H hydrogen but donate an H atom to a coordinated alkoxo group (O1) of the same ligand moiety. This inter­action (denoted type-B) results in the formation of a seven-membered N—H···O(H)—H···O—C—C ring. Moreover, the axial N—H hydrogen of the type-B inter­action is bifurcated, forming an additional hydrogen bond to O4W, which in turn represents again a type-A inter­action (Fig. 2a). As a consequence, the remaining axial N—H hydrogen at atom N4 is not involved in this particular hydration scheme. Type-A inter­actions have been observed previously in other taci complexes with such a zwitterionic form (Hegetschweiler et al., 1995), whereas type-B inter­actions have not been reported yet. The specific structure of the taci ligand together with the characteristic hydration shell of the cations resulted in a strongly dipolar shape of the entire aggregate with two hydro­phobic poles (the C6H6 frames) and a hydro­philic belt. Inter­connection of these hydrated cations emerges mainly via inter­molecular hydrogen bonding (Table 2) between the hydro­philic belts of neighbouring complex molecules either with or without participation of the chloride counter-ions. The following inter­actions are observed:

(i): N—H···Cl···H—N;

(ii): N—H···O(H)2···H—N, together with Oalkoxo···H(OH)···H—N;

(iii): N—H···O(H)—H···Cl···H—N, together with Oalkoxo···H—O—H···Cl···H—N;

(iv): N—H···O(H)—H···Cl···H—(H)O···H—N, together with Oalkoxo···H—O—H···Cl···H—(H)O···H—N and Oalkoxo···H—O—H···Cl···H—O—H···Oalkoxo.

Cations of Ge1 are inter­connected via inter­action types (i), (ii) and (iii), forming chains along the crystallographic a axis. Additional type (i) inter­linking along the b axis generates layers, which are oriented parallel to the ab plane (Fig. 3a). Similarly, the cations of Ge2 form chains along the a axis via inter­action types (i), (ii) and (iv). Further inter­linking by type (i) hydrogen bonds along b results again in the formation of layers parallel to the ab plane (Fig. 3b). Finally, inter­linking of the two different cationic species (Ge1 and Ge2) by all four inter­action types constitutes layers oriented parallel to the bc plane (Fig. 3c). The four inter­action types give rise to the formation of a variety of different cyclic patterns. Some of them are displayed in Fig. 4. The first example (Fig. 4a) shows the direct inter­linking of [Ge1(taci)2](H2O)64+ aggregates via type-B-bonded H2O molecules. In terms of a graph-set description, the type-B binding comprises two individual finite hydrogen bonds and the corresponding first-level (N1) descriptor is DD. The cyclic nature of this arrangement becomes evident from the second level (N2) analysis with the descriptor R22(7). This pattern is further extended to chains of the type C12(9) along the a axis considering the additional hydrogen bond from O3W to O7, and the combination of two symmetry-related C12(9) patterns finally constitute large rings of the type R42(24). The inter­linking of type-A-bonded water molecules, as observed for Ge2, takes place by a somewhat different mechanism (Fig. 4b). Again, the type-A binding comprises two finite hydrogen bonds (N1: DD). The emerging ring pattern (N2) is, however, R22(9). The formation of C12(9) chains follows again from the additional hydrogen bonding (O3W···O7) to a neighbouring cation, and the combination of symmetry-related C12(9) chains generates R42(8) and (more complex) R44(24) rings. It has been pointed out by Bernstein et al. that the R42(8) pattern is quite common for hydrogen bonding and is observed in a variety of different structures. The archetypal nature of the R42(8) pattern is also evident in the title compound. It is not only found for the abovementioned Ge2-cation···water inter­linking along [100] (Fig. 4b), but also for the cation–chloride inter­actions of Ge1 along [110] (Fig. 4c). Further cyclic patterns containing ammonium groups and chloride anions with larger rings are obtained as some parts of the ligand skeleton is included within the loop. Fig. 4(d) shows the alignment of Ge1 along the b axis, forming R42(16)-rings, whereas connection of the Ge1 cations along the a axis is not only mediated via water molecules (Fig. 4a), but also via chloride anions (Fig. 4e), forming R42(12) and large R43(24) patterns. The latter are again obtained by combining two symmetry-related R42(12) motifs within the Ge1···Ge1 chain. Finally, even more complex structures evolve, if both H2O and Cl- are included within the cycle. Such an example, comprising two chloride anions and four water molecules, adding up to R86(22) (for a loop via N—H···OH2) or R86(20) (for a loop via H—O—H···Oalkoxo) is shown for the Ge2···Ge2 inter­action along the b axis in Fig. 4(f).

With regard to the counter-ions (Fig. 5), Cl1 accepts one N—H and four H—O (water) hydrogens, thus having a coordination number of five. It is engaged by the inter­connection from three cations (two Ge2 and one Ge1). Cl2 accepts three N—H hydrogens from three cations (two Ge1 and one Ge2), Cl3 accepts four N—H hydrogens from four cations (three Ge2 and one Ge1) and Cl4 accepts three N—H hydrogens and one water H atom, inter­linking three cations of Ge1. As can be seen in Fig. 5, the geometry of the corresponding Cl1H5, Cl2H3, Cl3H4 and Cl4H4 polyhedra is strongly irregular throughout.

The title compound exhibits a remarkably complex three-dimensional network of hydrogen bonds. Although a waste variety of different types of inter­actions are formed, direct taci–taci contacts, such as N—H···Oalkoxo, are not observed. It is obvious that bis-taci complexes with a zwitterionic form of the ligand display a completely different behaviour than the free ligand, its protonation products and metal complexes with the ligand in a nonzwitterionic form (Neis et al., 2014). In addition, no direct inter­actions between the hydro­phobic poles of the [Ge(taci)2]4+ cations in the form of C—H···H—C van der Waals contacts are observed. As can be seen in Figs. 3(b) and 3(c), the nearest neighbours of the hydro­phobic poles are either water molecules or chloride ions, with H···O distances around 2.5 Å and H···Cl distances in the range from 2.6–2.8 Å. It remains questionable whether these inter­actions could be regarded as additional weak C—H···X hydrogen bonds. Inspection of this structure also supports the conclusion that simple electrostatic inter­actions contribute extensively to its stability. The non-observance of direct N—H···Oalkoxo inter­actions could be explained by the considerable Coulombic repulsion between the fourfold cations. On the other hand, cation–anion attraction, which of course results in a general Madelung-type stabilization, is directly visible (Fig. 5d), displaying a `salt bridge' with an ammonium group (N8) where all three H atoms (N8) are directed towards Cl4 [N8···Cl4 separation = 3.2(?) Å]. It is also noteworthy that in contrast to the well balanced pairing of vicinal HO—CH—CH—NH2 groups mentioned above, the hydrogen-bonding scheme in the title compound remains unbalanced. One of the water H atoms (H3W—O2W), as an example, remains without an acceptor (Fig. 3c).

Synthesis and crystallization top

1,3,5-Tri­amino-1,3,5-tri­deoxy-cis-inositol (taci) was prepared as described by Hegetschweiler et al. (1990). The title compound, i.e. [Ge(taci)2]2Cl8.12H2O, was prepared by combining solutions of GeCl4 (0.50 g, 2.33 mmol in 5 ml of MeOH) and taci (0.82 g, 4.63 mmol in 25 ml of MeOH) following the protocol given by Ghisletta (1994). Colourless single crystals suitable for X-ray analysis were grown from an aqueous solution by slow evaporation at ambient temperature. 1H NMR (D2O): δ 4.53, 3.53; 13C NMR (D2O): δ 75.3, 54.7.

The crystals effloresce under ambient conditions when exposed to the air and lose two of the six equivalents of water, forming the terahydrate [Ge(taci)2]Cl4.4H2O. Elemental analysis calculated (%) for C12H38Cl4GeN6O10: C 22.49, H 5.98, Cl 22.13, Ge 11.33, N, 13.11; found: C 22.52, H 5.69, Cl 22.62, Ge 11.25, N, 12.80. Ge was determined by ICP–MS (inductively coupled plasma mass spectrometry) and Cl was determined by argentometric titrations.

Refinement details top

Crystal data, data collection and structure refinement details are summarized in Table 1. All H atoms were located in a difference Fourier map and were treated as recommended by Müller et al. (2006). A riding model was used for the C-bonded H atoms. The positional parameters of the O- and N-bonded H atoms were refined using isotropic displacement parameters which were set at 1.5×Ueq of the pivot atom. In addition, restraints of 0.84 and 0.88 Å were used for the O—H and N—H bond lengths, respectively.

Computing details top

Data collection: APEX2 (Bruker, 2010); cell refinement: SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: DIAMOND (Brandenburg, 2012); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015).

Figures top
[Figure 1] Fig. 1. Digonal distortion of the two crystallographically independent [Ge(taci)2]4+ cations from D3d to C2h. Intraligand O···O and interligand O···O separations (in Å) are given in red and blue, respectively. Of each pair, the first number refers to Ge1 and the second (in italics) to Ge2. The relevant symmetry elements and pseudosymmetry elements are displayed in green.
[Figure 2] Fig. 2. The molecular structure and atom-numbering scheme for the two [Ge(taci)2](H2O)64+ cations of (I). The cyclohexane frame is shown as a stick model. N (dark blue), alkoxo O (red), water O (orange), Ge (light blue), and N– and O-bonded H (white) atoms are shown as spheres of arbitrary size, while C-bonded H atoms have been omitted for clarity. N—H···O (blue) and O—H···O (orange) hydrogen bonds are represented by thin broken lines.
[Figure 3] Fig. 3. Sections of the hydrogen-bonding pattern in (I). (a)/(b) The layers parallel to the ab plane formed by the interlinking of symmetry-related cations of Ge1 and Ge2, respectively. (c) A layer parallel to the bc plane formed by the mutual interlinking of the cations of Ge1 and Ge2. The colour code is as used in Fig. 1. In addition, the chloride counter-anions are shown as green spheres and N—H···Cl and O—H···Cl hydrogen bonds are represented as thin broken green lines. Weak C—H···Cl and C—H···Cl contacts are shown as thin broken black lines. C– and N-bonded H atoms, as well as ammonium groups, which are not involved in the intermolecular hydrogen-bonding scheme shown explicitely in the figure have been omitted for clarity.
[Figure 4] Fig. 4. A selection of cyclic motifs, emerging from the various linking interactions between neighbouring cations. The representation of atoms and bonds is as in Fig. 2. (a) R44(18), R44(21) and R44(24) rings which are formed within the chains of Ge1 cations aligned along the a axis. (b)/(c) The R24(8) motif observed for the Ge2···Ge2 and Ge1···Ge1 interactions, respectively. (d)/(e) The R24(16), R24(12) and R24(24) ring observed for the interlinking of Ge1. Complex R48(24) rings which are observed for the Ge2···Ge2 interconnection, comprising four ammonium groups, four water molecules and two chloride anions. Atoms and bonds are as represented in Fig. 2.
[Figure 5] Fig. 5. The chloride anions with their environments. Atoms and bonds are as represented in Fig. 2.
Bis[2,4,6-triazaniumylcyclohexane-1,3,5-tris(olate)-κ3O,O',O'']germanium(IV) tetrachloride hexahydrate top
Crystal data top
C12H30GeN6O64+·4Cl·6H2OZ = 2
Mr = 676.90F(000) = 704
Triclinic, P1Dx = 1.730 Mg m3
a = 8.5247 (5) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.9152 (6) ÅCell parameters from 9303 reflections
c = 15.1592 (8) Åθ = 2.5–33.3°
α = 82.980 (2)°µ = 1.66 mm1
β = 79.248 (2)°T = 123 K
γ = 70.022 (2)°Block, colourless
V = 1299.78 (13) Å30.55 × 0.45 × 0.45 mm
Data collection top
Bruker X8 APEX/Nonius KappaCCD
diffractometer
5520 reflections with I > 2σ(I)
φ and ω scansRint = 0.021
Absorption correction: multi-scan
(SADABS; Bruker, 2010)
θmax = 27.0°, θmin = 2.0°
Tmin = 0.620, Tmax = 0.747h = 1010
29040 measured reflectionsk = 1313
5652 independent reflectionsl = 1519
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.018Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.048H atoms treated by a mixture of independent and constrained refinement
S = 1.07 w = 1/[σ2(Fo2) + (0.020P)2 + 1.016P]
where P = (Fo2 + 2Fc2)/3
5652 reflections(Δ/σ)max = 0.001
411 parametersΔρmax = 0.60 e Å3
30 restraintsΔρmin = 0.53 e Å3
Crystal data top
C12H30GeN6O64+·4Cl·6H2Oγ = 70.022 (2)°
Mr = 676.90V = 1299.78 (13) Å3
Triclinic, P1Z = 2
a = 8.5247 (5) ÅMo Kα radiation
b = 10.9152 (6) ŵ = 1.66 mm1
c = 15.1592 (8) ÅT = 123 K
α = 82.980 (2)°0.55 × 0.45 × 0.45 mm
β = 79.248 (2)°
Data collection top
Bruker X8 APEX/Nonius KappaCCD
diffractometer
5652 independent reflections
Absorption correction: multi-scan
(SADABS; Bruker, 2010)
5520 reflections with I > 2σ(I)
Tmin = 0.620, Tmax = 0.747Rint = 0.021
29040 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.01830 restraints
wR(F2) = 0.048H atoms treated by a mixture of independent and constrained refinement
S = 1.07Δρmax = 0.60 e Å3
5652 reflectionsΔρmin = 0.53 e Å3
411 parameters
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Ge10.50000.00000.50000.00507 (5)
Cl10.34505 (5)0.53186 (4)0.29724 (2)0.01918 (8)
O10.26716 (11)0.08331 (9)0.53532 (6)0.00782 (17)
C10.21252 (16)0.18593 (12)0.59443 (8)0.0079 (2)
H10.08620.21850.60530.009*
Ge20.00000.50001.00000.00523 (5)
Cl20.16658 (4)0.89804 (3)0.18156 (2)0.01299 (7)
N20.21771 (15)0.02494 (11)0.72309 (8)0.0104 (2)
H2C0.1080 (12)0.0512 (17)0.7434 (11)0.016*
H2B0.273 (2)0.0190 (16)0.7674 (9)0.016*
H2A0.235 (2)0.0291 (15)0.6808 (10)0.016*
C20.27454 (16)0.13831 (12)0.68518 (9)0.0086 (2)
H20.22480.21030.72730.010*
Cl30.58198 (4)0.09882 (3)0.11571 (2)0.01123 (7)
O30.54265 (11)0.01265 (9)0.61961 (6)0.00764 (17)
C30.46737 (16)0.09543 (12)0.67402 (8)0.0078 (2)
H30.50280.06950.73470.009*
Cl40.15020 (4)0.64858 (3)0.53102 (2)0.01232 (7)
C40.52395 (16)0.21148 (12)0.63282 (9)0.0083 (2)
H40.47260.28460.67400.010*
N40.71145 (14)0.17095 (11)0.62418 (8)0.0103 (2)
H4C0.741 (2)0.1627 (17)0.6779 (8)0.015*
H4B0.751 (2)0.2279 (14)0.5878 (10)0.015*
H4A0.761 (2)0.0953 (12)0.5987 (11)0.015*
O50.54073 (11)0.16181 (9)0.47733 (6)0.00759 (17)
C50.46765 (16)0.25862 (12)0.54107 (9)0.0080 (2)
H50.50260.33670.51780.010*
C70.14445 (16)0.74172 (12)0.89916 (8)0.0082 (2)
H70.23690.78750.86280.010*
O70.15275 (11)0.61525 (9)0.92760 (6)0.00795 (18)
C80.02392 (16)0.73851 (12)0.84157 (8)0.0084 (2)
H80.02160.83070.82580.010*
N80.04825 (15)0.67499 (11)0.75618 (8)0.0101 (2)
H8A0.0396 (17)0.7159 (16)0.7290 (11)0.015*
H8C0.1404 (16)0.6826 (17)0.7210 (10)0.015*
H8B0.057 (2)0.5923 (10)0.7650 (12)0.015*
C90.16852 (16)0.67069 (12)0.89530 (8)0.0079 (2)
H90.27720.67110.85670.010*
O90.18025 (11)0.53983 (9)0.92401 (6)0.00786 (18)
C120.16892 (16)0.82192 (12)0.97956 (9)0.0086 (2)
H120.16570.91110.95670.010*
O1W0.02517 (14)0.57481 (10)0.25090 (7)0.0154 (2)
H1W0.0704 (15)0.5636 (19)0.2642 (13)0.023*
H2W0.020 (2)0.5953 (18)0.1955 (7)0.023*
O2W0.27293 (13)0.22936 (10)0.30544 (7)0.0152 (2)
H3W0.343 (2)0.2516 (18)0.2675 (11)0.023*
H4W0.328 (2)0.1569 (12)0.3276 (12)0.023*
O3W0.41176 (13)0.44012 (10)0.09881 (7)0.0164 (2)
H5W0.3296 (18)0.4169 (19)0.0941 (13)0.025*
H6W0.402 (3)0.4533 (19)0.1530 (7)0.025*
O5W0.97249 (14)0.05039 (11)0.40190 (7)0.0188 (2)
H9W0.903 (2)0.0194 (19)0.4347 (12)0.028*
H10W0.952 (3)0.1225 (12)0.4217 (13)0.028*
O4W0.64995 (14)0.26799 (11)0.31329 (7)0.0164 (2)
H7W0.5723 (19)0.3392 (13)0.3084 (13)0.025*
H8W0.623 (2)0.2403 (18)0.3652 (8)0.025*
O6W0.59307 (17)0.65553 (12)0.16287 (9)0.0345 (3)
H11W0.658 (3)0.5880 (16)0.1386 (16)0.052*
H12W0.509 (2)0.636 (2)0.1882 (16)0.052*
N120.33744 (14)0.83462 (11)1.03432 (8)0.0099 (2)
H12A0.4124 (18)0.8493 (17)0.9983 (10)0.015*
H12B0.342 (2)0.7663 (13)1.0710 (10)0.015*
H12C0.371 (2)0.9038 (13)1.0660 (11)0.015*
C110.02864 (16)0.75855 (12)1.03694 (9)0.0082 (2)
H110.04560.81621.08680.010*
O110.02991 (11)0.63406 (9)1.07497 (6)0.00779 (17)
C100.13823 (16)0.75255 (12)0.97592 (9)0.0084 (2)
H100.13320.84340.95290.010*
H10B0.270 (2)0.7446 (16)1.0706 (9)0.018 (4)*
N100.28346 (14)0.69589 (11)1.02618 (8)0.0102 (2)
H10C0.3764 (16)0.6924 (17)0.9882 (10)0.015*
H10A0.298 (2)0.6147 (10)1.0483 (11)0.015*
C60.27445 (16)0.30084 (12)0.55631 (8)0.0086 (2)
H60.22870.37090.60000.010*
N60.21305 (15)0.35440 (11)0.46944 (8)0.0100 (2)
H6A0.264 (2)0.3019 (15)0.4259 (9)0.015*
H6B0.1050 (13)0.3638 (17)0.4739 (12)0.015*
H6C0.225 (2)0.4310 (11)0.4543 (12)0.015*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Ge10.00563 (9)0.00489 (9)0.00471 (9)0.00180 (7)0.00080 (6)0.00011 (6)
Cl10.02134 (18)0.02079 (18)0.01659 (16)0.01033 (14)0.00246 (13)0.00375 (13)
O10.0070 (4)0.0074 (4)0.0088 (4)0.0018 (3)0.0006 (3)0.0022 (3)
C10.0070 (6)0.0072 (6)0.0087 (6)0.0015 (5)0.0005 (4)0.0010 (5)
Ge20.00552 (9)0.00493 (9)0.00533 (9)0.00180 (7)0.00099 (6)0.00017 (6)
Cl20.01460 (16)0.01298 (15)0.01089 (14)0.00306 (12)0.00292 (12)0.00167 (11)
N20.0105 (5)0.0116 (5)0.0092 (5)0.0048 (4)0.0009 (4)0.0012 (4)
C20.0097 (6)0.0083 (6)0.0080 (6)0.0036 (5)0.0000 (5)0.0008 (4)
Cl30.01186 (15)0.01079 (15)0.01166 (14)0.00423 (12)0.00366 (11)0.00135 (11)
O30.0095 (4)0.0066 (4)0.0063 (4)0.0012 (3)0.0019 (3)0.0014 (3)
C30.0088 (6)0.0085 (6)0.0062 (5)0.0028 (5)0.0009 (4)0.0015 (4)
Cl40.01222 (15)0.01241 (15)0.01334 (15)0.00581 (12)0.00138 (11)0.00031 (11)
C40.0076 (6)0.0086 (6)0.0089 (6)0.0026 (5)0.0013 (5)0.0019 (5)
N40.0099 (5)0.0118 (6)0.0104 (5)0.0048 (4)0.0030 (4)0.0008 (4)
O50.0094 (4)0.0063 (4)0.0071 (4)0.0030 (3)0.0001 (3)0.0012 (3)
C50.0095 (6)0.0061 (6)0.0088 (6)0.0028 (5)0.0016 (5)0.0009 (4)
C70.0090 (6)0.0069 (6)0.0081 (6)0.0019 (5)0.0021 (5)0.0008 (4)
O70.0084 (4)0.0064 (4)0.0095 (4)0.0029 (3)0.0027 (3)0.0010 (3)
C80.0103 (6)0.0078 (6)0.0071 (6)0.0032 (5)0.0012 (5)0.0001 (4)
N80.0109 (5)0.0114 (5)0.0074 (5)0.0032 (4)0.0014 (4)0.0002 (4)
C90.0088 (6)0.0073 (6)0.0079 (6)0.0034 (5)0.0010 (5)0.0008 (4)
O90.0077 (4)0.0061 (4)0.0090 (4)0.0025 (3)0.0004 (3)0.0002 (3)
C120.0088 (6)0.0068 (6)0.0090 (6)0.0019 (5)0.0004 (5)0.0002 (5)
O1W0.0191 (5)0.0162 (5)0.0094 (5)0.0040 (4)0.0017 (4)0.0007 (4)
O2W0.0148 (5)0.0134 (5)0.0148 (5)0.0015 (4)0.0050 (4)0.0036 (4)
O3W0.0125 (5)0.0173 (5)0.0223 (5)0.0072 (4)0.0056 (4)0.0010 (4)
O5W0.0194 (5)0.0169 (5)0.0207 (5)0.0076 (4)0.0015 (4)0.0057 (4)
O4W0.0171 (5)0.0199 (5)0.0114 (5)0.0076 (4)0.0015 (4)0.0006 (4)
O6W0.0347 (7)0.0131 (6)0.0414 (8)0.0053 (5)0.0264 (6)0.0047 (5)
N120.0087 (5)0.0096 (5)0.0100 (5)0.0011 (4)0.0011 (4)0.0013 (4)
C110.0100 (6)0.0067 (6)0.0084 (6)0.0032 (5)0.0017 (5)0.0010 (4)
O110.0104 (4)0.0062 (4)0.0073 (4)0.0036 (3)0.0013 (3)0.0001 (3)
C100.0086 (6)0.0078 (6)0.0098 (6)0.0032 (5)0.0030 (5)0.0004 (5)
N100.0097 (5)0.0110 (5)0.0108 (5)0.0038 (4)0.0026 (4)0.0012 (4)
C60.0102 (6)0.0072 (6)0.0082 (6)0.0020 (5)0.0027 (5)0.0000 (5)
N60.0104 (5)0.0081 (5)0.0114 (5)0.0027 (4)0.0035 (4)0.0013 (4)
Geometric parameters (Å, º) top
Ge1—O11.8822 (9)C8—C91.5280 (17)
Ge1—O31.8946 (9)C8—H81.0000
Ge1—O51.8933 (9)N8—H8A0.878 (9)
Ge1—O1i1.8822 (9)N8—H8C0.886 (9)
Ge1—O3i1.8946 (9)N8—H8B0.876 (9)
Ge1—O5i1.8932 (9)C9—O91.4165 (15)
O1—C11.4169 (15)C9—C101.5330 (17)
C1—C61.5321 (17)C9—H91.0000
C1—C21.5333 (17)C12—N121.4897 (17)
C1—H11.0000C12—C111.5300 (17)
Ge2—O71.8866 (9)C12—H121.0000
Ge2—O91.8843 (9)O1W—H1W0.841 (9)
Ge2—O111.8818 (9)O1W—H2W0.839 (9)
Ge2—O7ii1.8866 (9)O2W—H3W0.827 (9)
Ge2—O9ii1.8844 (9)O2W—H4W0.837 (9)
Ge2—O11ii1.8817 (9)O3W—H5W0.839 (9)
N2—C21.4927 (16)O3W—H6W0.835 (9)
N2—H2C0.884 (9)O5W—H9W0.833 (9)
N2—H2B0.887 (9)O5W—H10W0.828 (9)
N2—H2A0.882 (9)O4W—H7W0.837 (9)
C2—C31.5296 (17)O4W—H8W0.828 (9)
C2—H21.0000O6W—H11W0.834 (10)
O3—C31.4166 (15)O6W—H12W0.832 (10)
C3—C41.5293 (17)N12—H12A0.879 (9)
C3—H31.0000N12—H12B0.882 (9)
C4—N41.4902 (16)N12—H12C0.879 (9)
C4—C51.5281 (17)C11—O111.4125 (15)
C4—H41.0000C11—C101.5310 (18)
N4—H4C0.880 (9)C11—H111.0000
N4—H4B0.891 (9)C10—N101.4864 (16)
N4—H4A0.888 (9)C10—H101.0000
O5—C51.4190 (15)N10—H10B0.877 (9)
C5—C61.5309 (17)N10—H10C0.881 (9)
C5—H51.0000N10—H10A0.884 (9)
C7—O71.4165 (15)C6—N61.4865 (16)
C7—C81.5261 (18)C6—H61.0000
C7—C121.5286 (17)N6—H6A0.877 (9)
C7—H71.0000N6—H6B0.882 (9)
C8—N81.4900 (16)N6—H6C0.875 (9)
O1—Ge1—O391.81 (4)O5—C5—H5108.5
O1—Ge1—O3i88.19 (4)C4—C5—H5108.5
O1—Ge1—O591.89 (4)C6—C5—H5108.5
O1—Ge1—O5i88.11 (4)O7—C7—C8112.67 (10)
O5—Ge1—O390.74 (4)O7—C7—C12111.21 (10)
O5—Ge1—O3i89.26 (4)C8—C7—C12107.48 (10)
O9—Ge2—O789.88 (4)O7—C7—H7108.5
O9ii—Ge2—O790.12 (4)C8—C7—H7108.5
O11—Ge2—O791.30 (4)C12—C7—H7108.5
O11ii—Ge2—O788.70 (4)N8—C8—C7110.83 (10)
O11—Ge2—O991.61 (4)N8—C8—C9111.87 (10)
O11ii—Ge2—O988.39 (4)C7—C8—C9110.04 (10)
C1—O1—Ge1119.50 (8)N8—C8—H8108.0
C3—O3—Ge1120.50 (7)C7—C8—H8108.0
C5—O5—Ge1119.77 (7)C9—C8—H8108.0
C7—O7—Ge2120.91 (8)C8—N8—H8A108.1 (12)
C9—O9—Ge2121.04 (8)C8—N8—H8C109.3 (12)
C11—O11—Ge2120.10 (8)H8A—N8—H8C108.9 (16)
O1i—Ge1—O1180.0C8—N8—H8B112.8 (12)
O1i—Ge1—O5i91.89 (4)H8A—N8—H8B108.2 (16)
O1i—Ge1—O588.11 (4)H8C—N8—H8B109.4 (16)
O5i—Ge1—O5180.000 (13)O9—C9—C8112.89 (10)
O1i—Ge1—O3i91.81 (4)O9—C9—C10110.99 (10)
O5i—Ge1—O3i90.74 (4)C8—C9—C10106.82 (10)
O1i—Ge1—O388.19 (4)O9—C9—H9108.7
O5i—Ge1—O389.26 (4)C8—C9—H9108.7
O3i—Ge1—O3180.0C10—C9—H9108.7
O1—C1—C6112.77 (10)N12—C12—C7109.07 (10)
O1—C1—C2111.31 (10)N12—C12—C11110.52 (10)
C6—C1—C2107.57 (10)C7—C12—C11111.06 (10)
O1—C1—H1108.4N12—C12—H12108.7
C6—C1—H1108.4C7—C12—H12108.7
C2—C1—H1108.4C11—C12—H12108.7
O11ii—Ge2—O11180.00 (3)H1W—O1W—H2W106.9 (19)
O11ii—Ge2—O9ii91.61 (4)H3W—O2W—H4W104.4 (19)
O11—Ge2—O9ii88.39 (4)H5W—O3W—H6W106.1 (19)
O9—Ge2—O9ii180.0H9W—O5W—H10W104 (2)
O11ii—Ge2—O7ii91.30 (4)H7W—O4W—H8W102.5 (19)
O11—Ge2—O7ii88.70 (4)H11W—O6W—H12W105 (2)
O9—Ge2—O7ii90.12 (4)C12—N12—H12A109.3 (12)
O9ii—Ge2—O7ii89.88 (4)C12—N12—H12B115.1 (12)
O7—Ge2—O7ii180.0H12A—N12—H12B107.9 (16)
C2—N2—H2C110.8 (12)C12—N12—H12C109.6 (12)
C2—N2—H2B111.6 (12)H12A—N12—H12C105.8 (16)
H2C—N2—H2B109.0 (16)H12B—N12—H12C108.7 (16)
C2—N2—H2A110.3 (12)O11—C11—C12111.99 (10)
H2C—N2—H2A106.7 (16)O11—C11—C10112.17 (10)
H2B—N2—H2A108.3 (16)C12—C11—C10106.74 (10)
N2—C2—C3109.12 (10)O11—C11—H11108.6
N2—C2—C1108.55 (10)C12—C11—H11108.6
C3—C2—C1110.99 (10)C10—C11—H11108.6
N2—C2—H2109.4N10—C10—C11111.14 (10)
C3—C2—H2109.4N10—C10—C9108.63 (10)
C1—C2—H2109.4C11—C10—C9111.45 (10)
O3—C3—C4110.91 (10)N10—C10—H10108.5
O3—C3—C2111.09 (10)C11—C10—H10108.5
C4—C3—C2108.52 (10)C9—C10—H10108.5
O3—C3—H3108.8C10—N10—H10B109.4 (12)
C4—C3—H3108.8C10—N10—H10C107.9 (12)
C2—C3—H3108.8H10B—N10—H10C111.3 (17)
N4—C4—C5110.44 (10)C10—N10—H10A114.4 (12)
N4—C4—C3108.59 (10)H10B—N10—H10A108.5 (16)
C5—C4—C3111.12 (10)H10C—N10—H10A105.3 (16)
N4—C4—H4108.9N6—C6—C5108.99 (10)
C5—C4—H4108.9N6—C6—C1110.10 (10)
C3—C4—H4108.9C5—C6—C1111.10 (10)
C4—N4—H4C109.5 (12)N6—C6—H6108.9
C4—N4—H4B110.7 (12)C5—C6—H6108.9
H4C—N4—H4B111.4 (16)C1—C6—H6108.9
C4—N4—H4A111.5 (12)C6—N6—H6A112.6 (12)
H4C—N4—H4A108.6 (16)C6—N6—H6B110.5 (12)
H4B—N4—H4A105.0 (16)H6A—N6—H6B104.9 (16)
O5—C5—C4112.44 (10)C6—N6—H6C110.5 (12)
O5—C5—C6111.73 (10)H6A—N6—H6C110.0 (16)
C4—C5—C6107.00 (10)H6B—N6—H6C108.0 (16)
O5i—Ge1—O1—C1134.59 (9)O7—C7—C8—C960.63 (13)
O5—Ge1—O1—C145.41 (9)C12—C7—C8—C962.23 (13)
O3i—Ge1—O1—C1134.60 (9)N8—C8—C9—O963.31 (14)
O3—Ge1—O1—C145.40 (9)C7—C8—C9—O960.36 (13)
Ge1—O1—C1—C659.68 (12)N8—C8—C9—C10174.43 (10)
Ge1—O1—C1—C261.33 (12)C7—C8—C9—C1061.90 (13)
O1—C1—C2—N255.20 (13)C8—C9—O9—Ge260.42 (12)
C6—C1—C2—N2179.21 (10)C10—C9—O9—Ge259.47 (12)
O1—C1—C2—C364.72 (13)O11ii—Ge2—O9—C9134.69 (9)
C6—C1—C2—C359.29 (13)O11—Ge2—O9—C945.31 (9)
O1i—Ge1—O3—C3135.26 (9)O7—Ge2—O9—C945.98 (9)
O1—Ge1—O3—C344.74 (9)O7ii—Ge2—O9—C9134.02 (9)
O5i—Ge1—O3—C3132.83 (9)O7—C7—C12—N1259.90 (13)
O5—Ge1—O3—C347.17 (9)C8—C7—C12—N12176.34 (10)
Ge1—O3—C3—C461.58 (12)O7—C7—C12—C1162.13 (13)
Ge1—O3—C3—C259.20 (12)C8—C7—C12—C1161.62 (13)
N2—C2—C3—O356.33 (13)N12—C12—C11—O1158.16 (14)
C1—C2—C3—O363.25 (13)C7—C12—C11—O1163.03 (13)
N2—C2—C3—C4178.51 (10)N12—C12—C11—C10178.72 (10)
C1—C2—C3—C458.93 (13)C7—C12—C11—C1060.09 (13)
O3—C3—C4—N459.22 (13)C12—C11—O11—Ge260.37 (12)
C2—C3—C4—N4178.49 (10)C10—C11—O11—Ge259.63 (12)
O3—C3—C4—C562.44 (13)O9—Ge2—O11—C1144.76 (9)
C2—C3—C4—C559.85 (13)O9ii—Ge2—O11—C11135.24 (9)
O1i—Ge1—O5—C5133.85 (9)O7—Ge2—O11—C1145.16 (9)
O1—Ge1—O5—C546.15 (9)O7ii—Ge2—O11—C11134.84 (9)
O3i—Ge1—O5—C5134.32 (9)O11—C11—C10—N1058.74 (14)
O3—Ge1—O5—C545.68 (9)C12—C11—C10—N10178.25 (10)
Ge1—O5—C5—C460.05 (12)O11—C11—C10—C962.59 (13)
Ge1—O5—C5—C660.29 (12)C12—C11—C10—C960.43 (13)
N4—C4—C5—O558.15 (13)O9—C9—C10—N1061.00 (13)
C3—C4—C5—O562.43 (13)C8—C9—C10—N10175.56 (10)
N4—C4—C5—C6178.81 (10)O9—C9—C10—C1161.78 (13)
C3—C4—C5—C660.60 (13)C8—C9—C10—C1161.66 (13)
C8—C7—O7—Ge261.04 (12)O5—C5—C6—N659.57 (13)
C12—C7—O7—Ge259.71 (12)C4—C5—C6—N6176.95 (10)
O11ii—Ge2—O7—C7134.70 (9)O5—C5—C6—C161.91 (13)
O11—Ge2—O7—C745.30 (9)C4—C5—C6—C161.56 (13)
O9—Ge2—O7—C746.31 (9)O1—C1—C6—N658.82 (13)
O9ii—Ge2—O7—C7133.69 (9)C2—C1—C6—N6178.07 (10)
O7—C7—C8—N863.64 (13)O1—C1—C6—C562.01 (13)
C12—C7—C8—N8173.50 (10)C2—C1—C6—C561.10 (13)
Symmetry codes: (i) x+1, y, z+1; (ii) x, y+1, z+2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2—H2C···Cl2iii0.882.313.1900 (12)171
N2—H2B···Cl3i0.892.273.1443 (12)170
N2—H2A···O5Wi0.882.443.0550 (16)128
N2—H2A···O4Wi0.882.453.088 (16)130
N4—H4C···Cl2iv0.882.353.2225 (12)170
N4—H4B···Cl4iv0.892.323.1978 (12)168
N4—H4A···O5Wv0.892.282.9395 (16)131
N8—H8A···O2Wiii0.882.022.8674 (16)161
N8—H8C···O4Wiv0.892.002.8352 (16)157
N8—H8C···Cl40.892.933.3840 (12)114
N8—H8B···O1Wiii0.881.982.8161 (16)159
O1W—H1W···Cl10.842.393.2264 (12)178
O1W—H2W···O11vi0.841.842.6708 (14)173
O2W—H4W···O3i0.841.782.6126 (13)173
O3W—H5W···O7iii0.841.762.5888 (14)172
O3W—H6W···Cl10.842.353.1755 (12)169
O5W—H9W···O1i0.832.082.8603 (14)156
O5W—H10W···Cl4iv0.832.503.3160 (11)171
O4W—H7W···Cl10.842.343.1716 (12)177
O4W—H8W···O50.831.932.7501 (14)171
O6W—H11W···O9iv0.831.812.6338 (15)170
O6W—H12W···Cl10.832.393.1801 (12)158
N12—H12A···Cl3iii0.882.353.2212 (12)171
N12—H12B···O6Wvii0.881.862.7202 (17)164
N12—H12C···Cl3viii0.882.233.0838 (12)165
N10—H10B···Cl2ix0.882.353.2097 (12)166
N10—H10C···O3Wiv0.882.212.9597 (16)143
N10—H10C···Cl3iv0.882.703.2591 (12)123
N10—H10A···O3Wix0.881.952.7953 (16)159
N6—H6A···O2W0.882.052.8606 (16)153
N6—H6B···Cl4iii0.882.243.1091 (12)168
N6—H6C···Cl40.882.603.2924 (12)137
N6—H6C···Cl10.882.673.3150 (12)131
Symmetry codes: (i) x+1, y, z+1; (iii) x, y+1, z+1; (iv) x+1, y+1, z+1; (v) x+2, y, z+1; (vi) x, y, z1; (vii) x1, y, z+1; (viii) x1, y+1, z+1; (ix) x, y, z+1.

Experimental details

Crystal data
Chemical formulaC12H30GeN6O64+·4Cl·6H2O
Mr676.90
Crystal system, space groupTriclinic, P1
Temperature (K)123
a, b, c (Å)8.5247 (5), 10.9152 (6), 15.1592 (8)
α, β, γ (°)82.980 (2), 79.248 (2), 70.022 (2)
V3)1299.78 (13)
Z2
Radiation typeMo Kα
µ (mm1)1.66
Crystal size (mm)0.55 × 0.45 × 0.45
Data collection
DiffractometerBruker X8 APEX/Nonius KappaCCD
Absorption correctionMulti-scan
(SADABS; Bruker, 2010)
Tmin, Tmax0.620, 0.747
No. of measured, independent and
observed [I > 2σ(I)] reflections
29040, 5652, 5520
Rint0.021
(sin θ/λ)max1)0.639
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.018, 0.048, 1.07
No. of reflections5652
No. of parameters411
No. of restraints30
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.60, 0.53

Computer programs: APEX2 (Bruker, 2010), SAINT (Bruker, 2010), SHELXS97 (Sheldrick, 2008), SHELXL2014 (Sheldrick, 2015), DIAMOND (Brandenburg, 2012).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2—H2C···Cl2iii0.882.313.1900 (12)171
N2—H2B···Cl3i0.892.273.1443 (12)170
N2—H2A···O5Wi0.882.443.0550 (16)128
N2—H2A···O4Wi0.882.453.088 (16)130
N4—H4C···Cl2iv0.882.353.2225 (12)170
N4—H4B···Cl4iv0.892.323.1978 (12)168
N4—H4A···O5Wv0.892.282.9395 (16)131
N8—H8A···O2Wiii0.882.022.8674 (16)161
N8—H8C···O4Wiv0.892.002.8352 (16)157
N8—H8C···Cl40.892.933.3840 (12)114
N8—H8B···O1Wiii0.881.982.8161 (16)159
O1W—H1W···Cl10.842.393.2264 (12)178
O1W—H2W···O11vi0.841.842.6708 (14)173
O2W—H4W···O3i0.841.782.6126 (13)173
O3W—H5W···O7iii0.841.762.5888 (14)172
O3W—H6W···Cl10.842.353.1755 (12)169
O5W—H9W···O1i0.832.082.8603 (14)156
O5W—H10W···Cl4iv0.832.503.3160 (11)171
O4W—H7W···Cl10.842.343.1716 (12)177
O4W—H8W···O50.831.932.7501 (14)171
O6W—H11W···O9iv0.831.812.6338 (15)170
O6W—H12W···Cl10.832.393.1801 (12)158
N12—H12A···Cl3iii0.882.353.2212 (12)171
N12—H12B···O6Wvii0.881.862.7202 (17)164
N12—H12C···Cl3viii0.882.233.0838 (12)165
N10—H10B···Cl2ix0.882.353.2097 (12)166
N10—H10C···O3Wiv0.882.212.9597 (16)143
N10—H10C···Cl3iv0.882.703.2591 (12)123
N10—H10A···O3Wix0.881.952.7953 (16)159
N6—H6A···O2W0.882.052.8606 (16)153
N6—H6B···Cl4iii0.882.243.1091 (12)168
N6—H6C···Cl40.882.603.2924 (12)137
N6—H6C···Cl10.882.673.3150 (12)131
Symmetry codes: (i) x+1, y, z+1; (iii) x, y+1, z+1; (iv) x+1, y+1, z+1; (v) x+2, y, z+1; (vi) x, y, z1; (vii) x1, y, z+1; (viii) x1, y+1, z+1; (ix) x, y, z+1.
 

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