The reaction between 2-[2-(aminoethyl)amino]ethanol and pyridine-2-carbaldehyde in a 1:2 molar ratio affords a mixture containing 2-({2-[(pyridin-2-ylmethylidene)amino]ethyl}amino)ethanol (PMAE) and 2-[2-(pyridin-2-yl)oxazolidin-3-yl]-N-(pyridin-2-ylmethylidene)ethanamine (POPME). Treatment of this mixture with copper(II) chloride or cadmium(II) chloride gave trichlorido[(2-hydroxyethyl)({2-[(pyridin-2-ylmethylidene)amino]ethyl})azanium]copper(II) monohydrate, [Cu(C10H16N3O)Cl3]·H2O or [Cu(HPMAE)Cl3]·H2O, 1, and dichlorido{2-[2-(pyridin-2-yl)oxazolidin-3-yl]-N-(pyridin-2-ylmethylidene)ethanamine}cadmium(II), [CdCl2(C16H18N4O)] or [CdCl2(POPME)], 2, which were characterized by elemental analysis, FT–IR, Raman and 1H NMR spectroscopy and single-crystal X-ray diffraction. PMAE is potentially a tetradentate N3O-donor ligand but coordinates to copper here as an N2 donor. In the structure of 1, the geometry around the Cu atom is distorted square pyramidal. In 2, the Cd atom has a distorted octahedral geometry. In addition to the hydrogen bonds, there are π–π stacking interactions between the pyridine rings in the crystal packing of 1 and 2. The ability of PMAE, POPME and 1 to interact with ten selected biomolecules (BRAF kinase, CatB, DNA gyrase, HDAC7, rHA, RNR, TrxR, TS, Top II and B-DNA) was investigated by docking studies and compared with doxorubicin.
Supporting information
CCDC references: 981062; 939160
Data collection: CrysAlis PRO (Agilent, 2012) for km42; CrysAlis PRO (Agilent, 2013) for zk1. Cell refinement: CrysAlis PRO (Agilent, 2012) for km42; CrysAlis PRO (Agilent, 2013) for zk1. Data reduction: CrysAlis PRO (Agilent, 2012) for km42; CrysAlis PRO (Agilent, 2013) for zk1. For both structures, program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015). Molecular graphics: OLEX2 (Dolomanov et al., 2009), ORTEP-3 (Farrugia, 2012), DIAMOND (Bergerhoff et al.., 1996) and Mercury (Macrae et al., 2008) for km42; OLEX2 (Dolomanov et al., 2009), ORTEP-3 (Farrugia, 2012) and DIAMOND (Bergerhoff et al.., 1996) for zk1. For both structures, software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).
Trichlorido[(2-hydroxyethyl)({2-[(pyridin-2-ylmethylidene)amino]ethyl})azanium]copper(II) monohydrate (km42)
top
Crystal data top
[Cu(C10H16N3O)Cl3]·H2O | F(000) = 780 |
Mr = 382.16 | Dx = 1.715 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 7.1296 (2) Å | Cell parameters from 3732 reflections |
b = 6.9197 (3) Å | θ = 2.9–29.2° |
c = 30.0061 (11) Å | µ = 2.02 mm−1 |
β = 91.066 (3)° | T = 150 K |
V = 1480.10 (9) Å3 | Block, green |
Z = 4 | 0.08 × 0.07 × 0.06 mm |
Data collection top
Agilent Xcalibur Eos Gemini ultra diffractometer | 3419 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 3199 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
Detector resolution: 16.2705 pixels mm-1 | θmax = 29.2°, θmin = 2.9° |
ω scans | h = −8→9 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012) | k = −5→8 |
Tmin = 0.908, Tmax = 1.000 | l = −39→33 |
6897 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.068 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.146 | w = 1/[σ2(Fo2) + (0.0128P)2 + 11.3982P] where P = (Fo2 + 2Fc2)/3 |
S = 1.38 | (Δ/σ)max < 0.001 |
3419 reflections | Δρmax = 0.91 e Å−3 |
181 parameters | Δρmin = −0.79 e Å−3 |
2 restraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Suitable crystals of 1 and 2 were mounted in oil and diffraction
data was collected at 150 K using a Rigaku Oxford Diffraction Xcalibur Gemini
Ultra diffractometer fitted with a Mo source emitting graphite-monochromated
Mo Kα radiation (λ = 0.71073 Å). Data integration, scaling and
empirical absorption correction was carried out using the CrysAlis PRO
program package. The structure was solved using direct methods SHELXS
(Sheldrick, 1990) and refined by full-matrix least-squares against F2
using SHELXL (Sheldrick, 1990). The non-H atoms were refined
anisotropically and H atoms were placed at idealized positions and refined
using a riding model. All calculations were carried out using the program
OLEX2 (Dolomanov et al.., 2009). Diagrams of the molecular
structures and unit cells were created using ORTEP-3 (Farrugia, 1997)
and DIAMOND (Bergerhoff et al.., 1996) software. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cu1 | 0.20878 (9) | −0.23132 (10) | 0.38743 (2) | 0.01491 (18) | |
Cl1 | 0.35986 (19) | −0.3746 (2) | 0.32813 (5) | 0.0193 (3) | |
Cl2 | −0.09932 (18) | −0.0913 (2) | 0.36009 (4) | 0.0191 (3) | |
Cl3 | 0.0783 (2) | −0.5160 (2) | 0.40924 (5) | 0.0203 (3) | |
N1 | 0.2317 (6) | −0.1284 (7) | 0.45117 (15) | 0.0164 (9) | |
N2 | 0.3408 (6) | 0.0219 (7) | 0.37536 (15) | 0.0152 (9) | |
O1 | −0.0961 (6) | 0.6030 (7) | 0.28176 (14) | 0.0250 (9) | |
H1 | −0.097297 | 0.677287 | 0.303899 | 0.037* | |
C10 | −0.1836 (8) | 0.4253 (9) | 0.2928 (2) | 0.0211 (12) | |
H10A | −0.305409 | 0.414037 | 0.276686 | 0.025* | |
H10B | −0.207415 | 0.421208 | 0.325224 | 0.025* | |
N3 | 0.1053 (6) | 0.2490 (7) | 0.31210 (15) | 0.0174 (10) | |
H3A | 0.157593 | 0.368345 | 0.315040 | 0.021* | |
H3B | 0.063540 | 0.212671 | 0.339320 | 0.021* | |
C2 | 0.1917 (8) | −0.1099 (10) | 0.52984 (19) | 0.0208 (12) | |
H2 | 0.154751 | −0.171083 | 0.556628 | 0.025* | |
C5 | 0.3035 (7) | 0.0538 (8) | 0.45260 (18) | 0.0149 (11) | |
O2 | 0.3733 (7) | 0.4831 (8) | 0.5851 (2) | 0.0389 (13) | |
C8 | 0.2534 (8) | 0.1097 (9) | 0.29789 (18) | 0.0185 (11) | |
H8A | 0.305307 | 0.152730 | 0.269173 | 0.022* | |
H8B | 0.196436 | −0.019426 | 0.293270 | 0.022* | |
C6 | 0.3678 (7) | 0.1252 (9) | 0.40979 (19) | 0.0174 (11) | |
H6 | 0.428706 | 0.246908 | 0.407729 | 0.021* | |
C7 | 0.4111 (7) | 0.0949 (9) | 0.33252 (18) | 0.0167 (11) | |
H7A | 0.509339 | 0.006780 | 0.321521 | 0.020* | |
H7B | 0.468339 | 0.223902 | 0.337119 | 0.020* | |
C3 | 0.2595 (8) | 0.0769 (10) | 0.53068 (19) | 0.0226 (13) | |
H3 | 0.266624 | 0.146866 | 0.557899 | 0.027* | |
C9 | −0.0588 (8) | 0.2616 (9) | 0.28035 (18) | 0.0191 (11) | |
H9A | −0.013635 | 0.281233 | 0.249679 | 0.023* | |
H9B | −0.130448 | 0.139135 | 0.280951 | 0.023* | |
C1 | 0.1780 (8) | −0.2083 (9) | 0.48930 (19) | 0.0187 (11) | |
H1A | 0.128866 | −0.335900 | 0.488864 | 0.022* | |
C4 | 0.3172 (8) | 0.1611 (9) | 0.49131 (19) | 0.0181 (11) | |
H4 | 0.364761 | 0.289349 | 0.490983 | 0.022* | |
H2A | 0.251 (5) | 0.452 (17) | 0.585 (4) | 0.09 (4)* | |
H2B | 0.42 (2) | 0.45 (3) | 0.612 (3) | 0.21 (9)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cu1 | 0.0162 (3) | 0.0122 (3) | 0.0164 (3) | −0.0026 (3) | 0.0016 (2) | −0.0002 (3) |
Cl1 | 0.0210 (6) | 0.0148 (7) | 0.0222 (7) | −0.0010 (5) | 0.0056 (5) | −0.0019 (5) |
Cl2 | 0.0146 (6) | 0.0210 (7) | 0.0216 (7) | −0.0003 (5) | 0.0013 (5) | 0.0033 (5) |
Cl3 | 0.0229 (7) | 0.0143 (7) | 0.0237 (7) | −0.0041 (5) | 0.0041 (5) | 0.0013 (5) |
N1 | 0.013 (2) | 0.018 (2) | 0.019 (2) | 0.0004 (19) | −0.0016 (17) | 0.0017 (19) |
N2 | 0.011 (2) | 0.015 (2) | 0.019 (2) | 0.0015 (18) | 0.0009 (17) | 0.0006 (18) |
O1 | 0.028 (2) | 0.020 (2) | 0.027 (2) | 0.0023 (19) | −0.0019 (18) | 0.0003 (18) |
C10 | 0.014 (3) | 0.027 (3) | 0.022 (3) | 0.002 (2) | −0.002 (2) | −0.001 (2) |
N3 | 0.019 (2) | 0.016 (2) | 0.017 (2) | 0.000 (2) | 0.0006 (17) | −0.0005 (19) |
C2 | 0.017 (3) | 0.027 (3) | 0.018 (3) | 0.006 (2) | 0.001 (2) | 0.003 (2) |
C5 | 0.009 (2) | 0.016 (3) | 0.019 (3) | 0.003 (2) | −0.0024 (19) | −0.001 (2) |
O2 | 0.026 (3) | 0.033 (3) | 0.058 (4) | −0.009 (2) | −0.004 (2) | 0.006 (3) |
C8 | 0.024 (3) | 0.017 (3) | 0.015 (3) | 0.002 (2) | 0.003 (2) | 0.000 (2) |
C6 | 0.008 (2) | 0.017 (3) | 0.026 (3) | 0.003 (2) | 0.000 (2) | 0.000 (2) |
C7 | 0.012 (2) | 0.017 (3) | 0.021 (3) | 0.001 (2) | 0.002 (2) | 0.003 (2) |
C3 | 0.018 (3) | 0.032 (4) | 0.018 (3) | 0.003 (3) | 0.000 (2) | −0.005 (2) |
C9 | 0.024 (3) | 0.017 (3) | 0.016 (3) | 0.000 (2) | −0.003 (2) | −0.001 (2) |
C1 | 0.016 (3) | 0.017 (3) | 0.023 (3) | −0.002 (2) | 0.000 (2) | 0.001 (2) |
C4 | 0.014 (2) | 0.017 (3) | 0.023 (3) | −0.001 (2) | −0.001 (2) | −0.002 (2) |
Geometric parameters (Å, º) top
Cu1—Cl1 | 2.3196 (15) | C2—C3 | 1.380 (9) |
Cu1—Cl2 | 2.5239 (15) | C2—C1 | 1.396 (8) |
Cu1—Cl3 | 2.2796 (15) | C5—C6 | 1.458 (8) |
Cu1—N1 | 2.045 (5) | C5—C4 | 1.381 (8) |
Cu1—N2 | 2.025 (5) | O2—H2A | 0.90 (2) |
N1—C5 | 1.361 (8) | O2—H2B | 0.90 (2) |
N1—C1 | 1.334 (7) | C8—H8A | 0.9900 |
N2—C6 | 1.268 (7) | C8—H8B | 0.9900 |
N2—C7 | 1.477 (7) | C8—C7 | 1.520 (7) |
O1—H1 | 0.8400 | C6—H6 | 0.9500 |
O1—C10 | 1.421 (8) | C7—H7A | 0.9900 |
C10—H10A | 0.9900 | C7—H7B | 0.9900 |
C10—H10B | 0.9900 | C3—H3 | 0.9500 |
C10—C9 | 1.492 (8) | C3—C4 | 1.386 (8) |
N3—H3A | 0.9100 | C9—H9A | 0.9900 |
N3—H3B | 0.9100 | C9—H9B | 0.9900 |
N3—C8 | 1.497 (7) | C1—H1A | 0.9500 |
N3—C9 | 1.498 (7) | C4—H4 | 0.9500 |
C2—H2 | 0.9500 | | |
| | | |
Cl1—Cu1—Cl2 | 109.18 (5) | N1—C5—C4 | 123.1 (5) |
Cl3—Cu1—Cl1 | 92.80 (6) | C4—C5—C6 | 122.7 (5) |
Cl3—Cu1—Cl2 | 93.88 (5) | H2A—O2—H2B | 106 (10) |
N1—Cu1—Cl1 | 146.75 (13) | N3—C8—H8A | 109.3 |
N1—Cu1—Cl2 | 102.96 (13) | N3—C8—H8B | 109.3 |
N1—Cu1—Cl3 | 93.35 (15) | N3—C8—C7 | 111.4 (4) |
N2—Cu1—Cl1 | 90.49 (14) | H8A—C8—H8B | 108.0 |
N2—Cu1—Cl2 | 90.83 (13) | C7—C8—H8A | 109.3 |
N2—Cu1—Cl3 | 173.04 (14) | C7—C8—H8B | 109.3 |
N2—Cu1—N1 | 80.58 (19) | N2—C6—C5 | 118.8 (5) |
C5—N1—Cu1 | 112.1 (4) | N2—C6—H6 | 120.6 |
C1—N1—Cu1 | 129.7 (4) | C5—C6—H6 | 120.6 |
C1—N1—C5 | 118.1 (5) | N2—C7—C8 | 111.1 (4) |
C6—N2—Cu1 | 114.0 (4) | N2—C7—H7A | 109.4 |
C6—N2—C7 | 117.9 (5) | N2—C7—H7B | 109.4 |
C7—N2—Cu1 | 128.2 (4) | C8—C7—H7A | 109.4 |
C10—O1—H1 | 109.5 | C8—C7—H7B | 109.4 |
O1—C10—H10A | 109.8 | H7A—C7—H7B | 108.0 |
O1—C10—H10B | 109.8 | C2—C3—H3 | 120.4 |
O1—C10—C9 | 109.4 (5) | C2—C3—C4 | 119.2 (6) |
H10A—C10—H10B | 108.2 | C4—C3—H3 | 120.4 |
C9—C10—H10A | 109.8 | C10—C9—N3 | 110.3 (5) |
C9—C10—H10B | 109.8 | C10—C9—H9A | 109.6 |
H3A—N3—H3B | 107.7 | C10—C9—H9B | 109.6 |
C8—N3—H3A | 108.8 | N3—C9—H9A | 109.6 |
C8—N3—H3B | 108.8 | N3—C9—H9B | 109.6 |
C8—N3—C9 | 113.8 (4) | H9A—C9—H9B | 108.1 |
C9—N3—H3A | 108.8 | N1—C1—C2 | 121.9 (6) |
C9—N3—H3B | 108.8 | N1—C1—H1A | 119.0 |
C3—C2—H2 | 120.3 | C2—C1—H1A | 119.0 |
C3—C2—C1 | 119.4 (6) | C5—C4—C3 | 118.2 (6) |
C1—C2—H2 | 120.3 | C5—C4—H4 | 120.9 |
N1—C5—C6 | 114.2 (5) | C3—C4—H4 | 120.9 |
Dichlorido{2-[2-(pyridin-2-yl)oxazolidin-3-yl]-
N-(pyridin-2-ylmethylidene)ethanamine}cadmium(II) (zk1)
top
Crystal data top
[CdCl2(C16H18N4O)] | F(000) = 928 |
Mr = 465.64 | Dx = 1.827 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 14.0924 (3) Å | Cell parameters from 3581 reflections |
b = 7.7111 (2) Å | θ = 2.6–28.8° |
c = 15.5819 (4) Å | µ = 1.62 mm−1 |
β = 90.317 (3)° | T = 150 K |
V = 1693.21 (8) Å3 | Plate, colourless |
Z = 4 | 0.12 × 0.07 × 0.02 mm |
Data collection top
Agilent Xcalibur Eos Gemini ultra diffractometer | 3937 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 3468 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
Detector resolution: 16.2705 pixels mm-1 | θmax = 29.2°, θmin = 2.6° |
ω scans | h = −19→17 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013) | k = −10→10 |
Tmin = 0.843, Tmax = 1.000 | l = −20→20 |
7994 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.026 | H-atom parameters constrained |
wR(F2) = 0.054 | w = 1/[σ2(Fo2) + (0.0182P)2 + 0.5445P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.002 |
3937 reflections | Δρmax = 0.40 e Å−3 |
217 parameters | Δρmin = −0.40 e Å−3 |
0 restraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Suitable crystals of 1 and 2 were mounted in oil and diffraction
data was collected at 150 K using a Rigaku Oxford Diffraction Xcalibur Gemini
Ultra diffractometer fitted with a Mo source emitting graphite-monochromated
Mo Kα radiation (λ = 0.71073 Å). Data integration, scaling and
empirical absorption correction was carried out using the CrysAlis PRO
program package. The structure was solved using direct methods SHELXS
(Sheldrick, 1990) and refined by full-matrix least-squares against F2
using SHELXL (Sheldrick, 1990). The non-H atoms were refined
anisotropically and H atoms were placed at idealized positions and refined
using a riding model. All calculations were carried out using the program
OLEX2 (Dolomanov et al.., 2009). Diagrams of the molecular
structures and unit cells were created using ORTEP-3 (Farrugia, 1997)
and DIAMOND (Bergerhoff et al.., 1996) software. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cd1 | 0.72322 (2) | 0.77644 (2) | 0.39286 (2) | 0.01457 (6) | |
Cl1 | 0.69652 (4) | 0.54339 (7) | 0.27381 (4) | 0.02331 (13) | |
Cl2 | 0.80606 (4) | 0.58248 (8) | 0.49548 (4) | 0.02552 (14) | |
O1 | 0.92207 (12) | 1.1591 (2) | 0.26533 (10) | 0.0219 (4) | |
N1 | 0.57343 (14) | 0.7700 (2) | 0.46709 (12) | 0.0167 (4) | |
N3 | 0.80051 (13) | 0.9556 (2) | 0.28314 (11) | 0.0149 (4) | |
C13 | 0.93979 (17) | 1.2066 (3) | 0.44397 (15) | 0.0192 (5) | |
H13 | 0.978734 | 1.270889 | 0.407964 | 0.023* | |
N4 | 0.81023 (13) | 1.0105 (2) | 0.45978 (12) | 0.0165 (4) | |
N2 | 0.60811 (13) | 0.9484 (2) | 0.32241 (12) | 0.0176 (4) | |
C2 | 0.46469 (17) | 0.6640 (3) | 0.57199 (16) | 0.0237 (5) | |
H2 | 0.455209 | 0.608317 | 0.624197 | 0.028* | |
C5 | 0.49914 (16) | 0.8322 (3) | 0.42215 (15) | 0.0176 (5) | |
C1 | 0.55591 (17) | 0.6888 (3) | 0.54096 (15) | 0.0207 (5) | |
H1 | 0.606892 | 0.647073 | 0.573001 | 0.025* | |
C16 | 0.82574 (17) | 1.0119 (3) | 0.54507 (15) | 0.0198 (5) | |
H16 | 0.787628 | 0.943211 | 0.579774 | 0.024* | |
C3 | 0.38868 (18) | 0.7225 (3) | 0.52470 (17) | 0.0261 (6) | |
H3 | 0.326940 | 0.704118 | 0.543395 | 0.031* | |
C11 | 0.84039 (16) | 1.1186 (3) | 0.31545 (14) | 0.0160 (5) | |
H11 | 0.793262 | 1.210708 | 0.307416 | 0.019* | |
C15 | 0.89576 (17) | 1.1110 (3) | 0.58327 (15) | 0.0235 (5) | |
H15 | 0.903037 | 1.112324 | 0.642619 | 0.028* | |
C6 | 0.52171 (16) | 0.9310 (3) | 0.34342 (15) | 0.0189 (5) | |
H6 | 0.473605 | 0.979249 | 0.310037 | 0.023* | |
C12 | 0.86610 (16) | 1.1084 (3) | 0.41011 (14) | 0.0150 (5) | |
C7 | 0.63678 (16) | 1.0547 (3) | 0.25001 (15) | 0.0198 (5) | |
H7A | 0.645255 | 1.173848 | 0.268419 | 0.024* | |
H7B | 0.587896 | 1.052234 | 0.205957 | 0.024* | |
C4 | 0.40591 (17) | 0.8099 (3) | 0.44832 (17) | 0.0227 (5) | |
H4 | 0.355897 | 0.852522 | 0.415349 | 0.027* | |
C14 | 0.95479 (17) | 1.2081 (3) | 0.53170 (16) | 0.0231 (5) | |
H14 | 1.003759 | 1.273393 | 0.555563 | 0.028* | |
C9 | 0.88601 (16) | 0.8642 (3) | 0.25202 (15) | 0.0185 (5) | |
H9A | 0.869661 | 0.779612 | 0.208315 | 0.022* | |
H9B | 0.918823 | 0.806116 | 0.298736 | 0.022* | |
C8 | 0.72977 (16) | 0.9848 (3) | 0.21379 (14) | 0.0189 (5) | |
H8A | 0.717758 | 0.876428 | 0.184015 | 0.023* | |
H8B | 0.755034 | 1.066845 | 0.172643 | 0.023* | |
C10 | 0.94624 (17) | 1.0093 (3) | 0.21502 (15) | 0.0216 (5) | |
H10A | 1.013267 | 0.982586 | 0.220492 | 0.026* | |
H10B | 0.931198 | 1.027972 | 0.154904 | 0.026* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cd1 | 0.01251 (9) | 0.01589 (9) | 0.01528 (9) | −0.00011 (6) | −0.00260 (6) | 0.00226 (6) |
Cl1 | 0.0278 (3) | 0.0191 (3) | 0.0230 (3) | −0.0044 (2) | −0.0026 (3) | −0.0031 (2) |
Cl2 | 0.0244 (3) | 0.0246 (3) | 0.0275 (3) | 0.0028 (2) | −0.0079 (3) | 0.0081 (3) |
O1 | 0.0256 (9) | 0.0207 (8) | 0.0194 (8) | −0.0070 (7) | 0.0072 (7) | −0.0016 (7) |
N1 | 0.0167 (10) | 0.0165 (10) | 0.0170 (10) | 0.0003 (8) | −0.0016 (8) | −0.0016 (8) |
N3 | 0.0161 (10) | 0.0149 (9) | 0.0137 (9) | 0.0001 (8) | −0.0033 (8) | −0.0017 (8) |
C13 | 0.0198 (12) | 0.0162 (11) | 0.0217 (12) | 0.0007 (10) | −0.0001 (10) | −0.0034 (10) |
N4 | 0.0157 (10) | 0.0177 (10) | 0.0161 (9) | 0.0013 (8) | −0.0019 (8) | 0.0002 (8) |
N2 | 0.0175 (10) | 0.0171 (10) | 0.0180 (10) | 0.0014 (8) | −0.0036 (8) | −0.0008 (8) |
C2 | 0.0265 (14) | 0.0197 (12) | 0.0249 (13) | −0.0025 (11) | 0.0083 (11) | −0.0028 (10) |
C5 | 0.0156 (11) | 0.0144 (11) | 0.0227 (12) | 0.0011 (9) | −0.0010 (10) | −0.0059 (10) |
C1 | 0.0206 (12) | 0.0211 (12) | 0.0204 (12) | −0.0004 (10) | −0.0014 (10) | −0.0014 (10) |
C16 | 0.0204 (12) | 0.0227 (12) | 0.0165 (11) | 0.0047 (10) | 0.0004 (10) | 0.0010 (10) |
C3 | 0.0191 (13) | 0.0224 (13) | 0.0369 (15) | −0.0020 (10) | 0.0107 (12) | −0.0082 (11) |
C11 | 0.0153 (11) | 0.0138 (11) | 0.0190 (11) | 0.0011 (9) | −0.0016 (9) | 0.0015 (9) |
C15 | 0.0287 (14) | 0.0258 (13) | 0.0158 (12) | 0.0080 (11) | −0.0058 (11) | −0.0063 (10) |
C6 | 0.0176 (12) | 0.0185 (12) | 0.0207 (12) | 0.0033 (9) | −0.0072 (10) | −0.0037 (10) |
C12 | 0.0150 (11) | 0.0148 (11) | 0.0152 (11) | 0.0045 (9) | −0.0009 (9) | −0.0013 (9) |
C7 | 0.0204 (12) | 0.0211 (12) | 0.0177 (11) | 0.0024 (10) | −0.0090 (10) | 0.0033 (10) |
C4 | 0.0135 (12) | 0.0212 (13) | 0.0335 (14) | 0.0014 (10) | −0.0022 (11) | −0.0095 (11) |
C14 | 0.0194 (12) | 0.0241 (13) | 0.0256 (13) | 0.0024 (10) | −0.0051 (11) | −0.0100 (11) |
C9 | 0.0177 (12) | 0.0178 (12) | 0.0200 (12) | 0.0015 (10) | 0.0007 (10) | 0.0011 (10) |
C8 | 0.0216 (12) | 0.0226 (12) | 0.0125 (11) | −0.0017 (10) | −0.0037 (9) | 0.0000 (10) |
C10 | 0.0206 (12) | 0.0214 (12) | 0.0228 (12) | 0.0009 (10) | 0.0037 (10) | 0.0009 (10) |
Geometric parameters (Å, º) top
Cd1—Cl1 | 2.6085 (6) | C5—C4 | 1.389 (3) |
Cd1—Cl2 | 2.4772 (6) | C1—H1 | 0.9300 |
Cd1—N1 | 2.4132 (19) | C16—H16 | 0.9300 |
Cd1—N3 | 2.4573 (18) | C16—C15 | 1.380 (3) |
Cd1—N4 | 2.4153 (19) | C3—H3 | 0.9300 |
Cd1—N2 | 2.3610 (19) | C3—C4 | 1.390 (4) |
O1—C11 | 1.429 (3) | C11—H11 | 0.9800 |
O1—C10 | 1.438 (3) | C11—C12 | 1.519 (3) |
N1—C5 | 1.345 (3) | C15—H15 | 0.9300 |
N1—C1 | 1.335 (3) | C15—C14 | 1.380 (3) |
N3—C11 | 1.465 (3) | C6—H6 | 0.9300 |
N3—C9 | 1.480 (3) | C7—H7A | 0.9700 |
N3—C8 | 1.483 (3) | C7—H7B | 0.9700 |
C13—H13 | 0.9300 | C7—C8 | 1.528 (3) |
C13—C12 | 1.387 (3) | C4—H4 | 0.9300 |
C13—C14 | 1.382 (3) | C14—H14 | 0.9300 |
N4—C16 | 1.346 (3) | C9—H9A | 0.9700 |
N4—C12 | 1.340 (3) | C9—H9B | 0.9700 |
N2—C6 | 1.270 (3) | C9—C10 | 1.520 (3) |
N2—C7 | 1.453 (3) | C8—H8A | 0.9700 |
C2—H2 | 0.9300 | C8—H8B | 0.9700 |
C2—C1 | 1.389 (3) | C10—H10A | 0.9700 |
C2—C3 | 1.373 (4) | C10—H10B | 0.9700 |
C5—C6 | 1.480 (3) | | |
| | | |
Cl2—Cd1—Cl1 | 96.24 (2) | C2—C3—C4 | 118.6 (2) |
N1—Cd1—Cl1 | 101.74 (5) | C4—C3—H3 | 120.7 |
N1—Cd1—Cl2 | 95.08 (5) | O1—C11—N3 | 107.95 (17) |
N1—Cd1—N3 | 137.50 (6) | O1—C11—H11 | 108.6 |
N1—Cd1—N4 | 104.58 (6) | O1—C11—C12 | 110.70 (18) |
N3—Cd1—Cl1 | 87.44 (4) | N3—C11—H11 | 108.6 |
N3—Cd1—Cl2 | 125.41 (5) | N3—C11—C12 | 112.23 (18) |
N4—Cd1—Cl1 | 153.21 (5) | C12—C11—H11 | 108.6 |
N4—Cd1—Cl2 | 86.34 (5) | C16—C15—H15 | 120.6 |
N4—Cd1—N3 | 69.78 (6) | C16—C15—C14 | 118.7 (2) |
N2—Cd1—Cl1 | 87.72 (5) | C14—C15—H15 | 120.6 |
N2—Cd1—Cl2 | 163.60 (5) | N2—C6—C5 | 118.6 (2) |
N2—Cd1—N1 | 68.52 (6) | N2—C6—H6 | 120.7 |
N2—Cd1—N3 | 70.54 (6) | C5—C6—H6 | 120.7 |
N2—Cd1—N4 | 97.30 (6) | C13—C12—C11 | 121.0 (2) |
C11—O1—C10 | 108.46 (17) | N4—C12—C13 | 121.9 (2) |
C5—N1—Cd1 | 115.06 (15) | N4—C12—C11 | 116.89 (19) |
C1—N1—Cd1 | 126.13 (16) | N2—C7—H7A | 109.8 |
C1—N1—C5 | 118.0 (2) | N2—C7—H7B | 109.8 |
C11—N3—Cd1 | 114.46 (13) | N2—C7—C8 | 109.30 (18) |
C11—N3—C9 | 102.10 (17) | H7A—C7—H7B | 108.3 |
C11—N3—C8 | 112.05 (17) | C8—C7—H7A | 109.8 |
C9—N3—Cd1 | 108.97 (13) | C8—C7—H7B | 109.8 |
C9—N3—C8 | 112.24 (17) | C5—C4—C3 | 118.8 (2) |
C8—N3—Cd1 | 107.06 (13) | C5—C4—H4 | 120.6 |
C12—C13—H13 | 120.3 | C3—C4—H4 | 120.6 |
C14—C13—H13 | 120.3 | C13—C14—H14 | 120.6 |
C14—C13—C12 | 119.4 (2) | C15—C14—C13 | 118.8 (2) |
C16—N4—Cd1 | 120.79 (15) | C15—C14—H14 | 120.6 |
C12—N4—Cd1 | 118.04 (14) | N3—C9—H9A | 111.1 |
C12—N4—C16 | 118.2 (2) | N3—C9—H9B | 111.1 |
C6—N2—Cd1 | 118.56 (16) | N3—C9—C10 | 103.38 (18) |
C6—N2—C7 | 122.1 (2) | H9A—C9—H9B | 109.1 |
C7—N2—Cd1 | 118.96 (14) | C10—C9—H9A | 111.1 |
C1—C2—H2 | 120.4 | C10—C9—H9B | 111.1 |
C3—C2—H2 | 120.4 | N3—C8—C7 | 111.02 (17) |
C3—C2—C1 | 119.2 (2) | N3—C8—H8A | 109.4 |
N1—C5—C6 | 116.4 (2) | N3—C8—H8B | 109.4 |
N1—C5—C4 | 122.5 (2) | C7—C8—H8A | 109.4 |
C4—C5—C6 | 121.0 (2) | C7—C8—H8B | 109.4 |
N1—C1—C2 | 122.7 (2) | H8A—C8—H8B | 108.0 |
N1—C1—H1 | 118.6 | O1—C10—C9 | 104.47 (17) |
C2—C1—H1 | 118.6 | O1—C10—H10A | 110.9 |
N4—C16—H16 | 118.6 | O1—C10—H10B | 110.9 |
N4—C16—C15 | 122.8 (2) | C9—C10—H10A | 110.9 |
C15—C16—H16 | 118.6 | C9—C10—H10B | 110.9 |
C2—C3—H3 | 120.7 | H10A—C10—H10B | 108.9 |
Selected bond lengths (Å) and angles (°) for 1 and 2 top | Bond lengths | | Angles | |
Complex 1 | Cu1—N1 | 2.045 (5) | N1—Cu1—N2 | 80.58 (19) |
| Cu1—N2 | 2.025 (5) | N2—Cu1—Cl1 | 90.49 (14) |
| Cu1—Cl1 | 2.3196 (15) | Cl1—Cu1—Cl2 | 109.18 (5) |
| Cu1—Cl2 | 2.5239 (15) | Cl2—Cu1—Cl3 | 93.88 (5) |
| Cu1—Cl3 | 2.2796 (15) | Cl3—Cu1—N1 | 93.35 (15) |
| | | Cl3—Cu1—Cl1 | 92.80 (6) |
Complex 2 | Cd1—Cl1 | 2.6085 (6) | Cl2—Cd1—Cl1 | 96.24 (2) |
| Cd1—Cl2 | 2.4772 (6) | N1—Cd1—Cl1 | 101.74 (5) |
| Cd1—N1 | 2.4132 (19) | N1—Cd1—Cl2 | 95.08 (5) |
| Cd1—N3 | 2.4573 (18) | N1—Cd1—N3 | 137.50 (6) |
| Cd1—N4 | 2.4153 (19) | N1—Cd1—N4 | 104.58 (6) |
| Cd1—N2 | 2.3610 (19) | N3—Cd1—Cl1 | 87.44 (4) |
Hydrogen-bond geometyr (Å and °) in 1 and 2 topD—H···A | D—H | H···A | D—H···A | D···A | Symmetry code on A atom |
Complex 1 | | | | | |
N3—H3A···Cl1 | 0.920 | 2.309 | 164.8 | 3.206 (5) | x, y+1, z |
N3—H3B···Cl2 | 0.919 | 2.482 | 128.2 | 3.134 (5) | x, y, z |
O1—H1···Cl2 | 0.840 | 2.325 | 174.2 | 3.163 (5) | x, y+1, z |
O2–H2A···Cl3 | 0.90 | 2.40 | 155 | 3.235 (5) | -x, -y, -z+1 |
O2—H2B···Cl1 | 0.90 | 2.40 | 161 | 3.283 (6) | -x+1, -y, -z+1 |
C6—H6···O2 | 0.950 | 2.349 | 166.8 | 3.281 (8) | -x+1, -y+1, -z+1 |
| | | | | |
Complex 2 | | | | | |
C6—H6···Cl1 | 0.930 | 2.7685 | 164.2 | 3.672 (2) | -x+1, y+1/2, -z+1/2 |
C15—H15···O1 | 0.930 | 2.613 | 138.2 | 3.364 (3) | x, -y+5/2, z+1/2 |
C10—H10A···O1 | 0.970 | 2.664 | 122.6 | 3.290 (3) | -x+2, y-1/2, -z+1/2 |
C9—H9B···O1 | 0.970 | 2.708 | 108.0 | 3.146 (3) | -x+2, y-1/2, -z+1/2 |
π–π stacking interactions dimensions (Å and °) in complexes
1 and 2 top | Centroid–centroid distance | Angle between the planes | Perpendicular distance | Slippage | Type |
1 | 3.592 | 0.00 | 3.290 | 1.442 | π(py)···π(py) |
| 3.658 | 0.00 | 3.266 | 1.647 | π(py)···π(py) |
2 | 3.729 | 0.00 | 3.382 | 1.571 | π(py)···π(py) |
The calculated fitness values for PMAE and POPME ligands and complex 1
along with doxorubicin top | B-DNAs/Min | BRAF-Kinase | CatB | DNA-Gyrase | HDAC7 | Rha | TrxR | RNR | TS | Top II |
PMAE | 51.16 | 35.00 | 29.19 | 40.38 | 45.95 | 37.85 | 35.57 | 40.05 | 35.48 | 38.62 |
POPME | 57.79 | 44.49 | 35.27 | 50.01 | 56.88 | 48.20 | 43.16 | 49.45 | 47.37 | 49.13 |
Complex 1 | 57.58 | 38.9 | 27.88 | 38.74 | 49.54 | 40.72 | 39.03 | 47.70 | 44.59 | 42.41 |
Doxorubicin | 83.10 | 54.21 | 25.95 | 52.97 | 50.73 | 50.10 | 49.18 | 66.70 | 53.34 | 59.05 |