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The title complex, [Cu(ClO4)2(C9H13N5O)(CH3OH)], was synthesized from a methanolysis reaction of N-(methyl­pyri­din-2-yl)cyano­guanidine (L3) and copper(II) perchlorate hexa­hydrate in a 1:1 molar ratio. The CuII ion is six-coordinated by an N3O3 donor set which confers a highly distorted and asymmetric octa­hedral geometry. Three N-donor atoms from the chelating 1-(meth­oxy­methanimido­yl)-2-(pyri­din-2-ylmeth­yl)guanidine (L3m) ligand and one O atom from the methanol mol­ecule define the equatorial plane, with two perchlorate O atoms in the apical sites, one of which has a long Cu—O bond of 2.9074 (19) Å. The dihedral angle between the five- and six-membered chelate rings is 8.21 (8)°. Two molecules are associated into a dimeric unit by inter­molecular N—H...O(perchlorate) hydrogen bonds. Additionally, the weakly coordinated perchlorate anions also link adjacent [Cu(ClO4)2(L3m)(CH3OH)] dimers by hydrogen-bonding inter­actions, resulting in a two-dimensional layer in the (100) plane. Further C—H...O hydrogen bonds link the two-dimensional layers along [100] to generate a three-dimensional network.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270112015843/fn3103sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270112015843/fn3103Isup2.hkl
Contains datablock I

CCDC reference: 889363

Comment top

Amidino-O-alkylureas (aOau) are a series of guanidine derivatives which have important roles in supramolecular architectures and bioinorganic systems because of their versatile hydrogen-bonding potential (Hubberstey et al., 2000). Several copper(II) complexes containing N-donor aOau ligands with various extended structures have been reported. For example, Suksangpanya and co-workers have reported the synthesis of two-dimensional rhombic (4,4) grids using copper(II) halides of two bidentate (N-alkylamidino-O-alkylurea) ligands (Suksangpanya et al., 2003). Also, copper(II) halide complexes containing tridentate (Suksangpanya et al., 2004) and tetradentate (Suksangpanya et al., 2002) aOau derivatives have been intensively investigated by single-crystal X-ray diffraction. Crystallographic data indicate that their different extended hydrogen-bonding interactions depend partially on the substituents on the aOau ligand defining the hydrogen-bond donors and acceptors. Recently, Chaveerach and co-workers have investigated the DNA binding and nuclease behaviors (Chaveerach et al., 2010) and the interactions with cytosine nucleobase (Meenongwa et al., 2011) of copper(II) complexes containing amidino-O-methylurea (L1m) and N-(methylphenyl)-amidino-O-methylurea (L2m). Herein, we present the structure of the title compound, (I), a copper(II) bis(perchlorate) complex of N-(methylpyridin-2-yl)-amidino-O-methylurea (L3m) (Scheme 1), which was prepared using a procedure similar to that previously reported (Suksangpanya et al., 2004) but using copper(II) perchlorate hexahydrate instead of a copper(II) halide.

The initial product was obtained as a purple solid (Scheme 2) with a dd transition at λmax = 583.0 nm. The elemental analysis was in agreement with the formula [Cu(L3m)(ClO4)](ClO4). In the presence of methanol, the product solution turned greenish-blue in color and displayed an electronic absorption at λmax = 621.4 nm. This result could mirror the change in the coordination geometry at the CuII center between solid and solution phases of this complex. Suitable single crystals of the title complex, (I), were obtained by slow evaporation of a methanol solution of the initial product.

The molecular structure of (I) is shown in Fig. 1. This complex crystallizes in the triclinic space group P1 with one molecule of [Cu(L3m)(CH3OH)(ClO4)2] in the asymmetric unit. The CuII cation is coordinated by three N donor atoms (N1, N2 and N3) from the chelating L3m ligand and by atom O2 from the methanol molecule (as a result of crystal growth from that solvent) lying in the equatorial plane, and atoms O3 and O9 from mutually trans perchlorate anions located at the two apical sites. The Cu—N bond distances range from 1.9315 (17) to 1.9711 (17) Å and the Cu1—O2 bond distance is 2.0132 (16) Å, while perchlorate atom O3 lies at a distance of 2.4935 (17) Å from the CuII center. The remaining axial site at Cu1 is occupied by atom O9 from another perchlorate anion. Although the Cu1—O9 distance of 2.9074 (19) Å is quite long (Dobrzyńska et al., 2010; Husain et al., 2011) compared with the average Cu—O(perchlorate) bond of 2.495 Å calculated from 91 examples of a perchlorate ion terminally coordinated to copper (Orpen et al., 1989), the role of O9 in completing the coordination around the CuII center results in the overall geometry being a distorted octahedron. The N1—Cu1—N3 and N2—Cu1—O2 angles are approximately linear (Table 1). Atom Cu1 is displaced by 0.0531 (2) Å from the mean plane through the equatorial donor atoms in the direction of the O3 axial donor, with a dihedral angle of 8.21 (8)° between the least-squares mean planes of the five-membered CuN2C2 and six-membered CuN3C2 chelate rings.

Two [Cu(L3m)(CH3OH)(ClO4)2] molecules form a dimeric unit (Fig. 2) via N—H···O hydrogen bonds (Table 2, entries 3, 4 and 5). The weakly coordinated perchlorate anion plays a major role in constructing an extensive network via N—H···O (Table 2, entries 1 and 2) and C—H···O (Table 2, entries 8 and 9) hydrogen bonds to form a two-dimensional layer in the (100) plane (Fig. 3). Further O—H···O and C—H···O hydrogen bonds (Table 2, entries 6 and 7) perpendicular to (010) link the two-dimensional layers to generate a three-dimensional network (Fig. 4). Although the title complex contains aromatic moieties, these are not observed to participate in ππ stacking interactions.

A comparison between (I) and the previously reported copper(II) complex containing the same L3m ligand but with halide anions instead of perchlorate anions, [Cu(L3m)X2] (X = Cl or Br; Suksangpanya et al., 2004) is also possible: both complexes show differences in geometry and chromophore. The [Cu(L3m)X2] complex displays a slightly distorted square-pyramidal geometry with a CuN3X2 chromophore, while a CuN3O3 chromophore with a highly-distorted octahedral geometry is observed in (I). This difference may arise from the fact that perchlorate anions are more sterically demanding than halide anions, but the fact that perchlorate is a poorly coordinating ligand may also be significant. As a result, the remaining free basal position is coordinated by a methanol molecule from the recrystallization solvent.

In summary, we have determined the crystal structure of [Cu(L3m)(CH3OH)(ClO4)2], (I). This is controlled not only by the high potential for hydrogen-bond formation exhibited by the L3m ligand, resulting in a three-dimensional packing motif, but also by the size, geometry and weak coordination of the perchlorate anion.

Related literature top

For related literature, see: Chaveerach et al. (2010); Dobrzyńska et al. (2010); Hubberstey et al. (2000); Husain et al. (2011); Meenongwa et al. (2011); Orpen et al. (1989); Rose & Swain (1956); Shapiro et al. (1961); Suksangpanya et al. (2002, 2003, 2004).

Experimental top

The N-(methylpyridin-2-yl)cyanoguanidine precursor (L3) was prepared as described previously (Rose & Swain, 1956; Shapiro et al., 1961). The copper(II) complex was prepared by mixing a 1:1 molar ratio of the N-(methylpyridin-2-yl)cyanoguanidine precursor (0.1760 g, 1 mmol) and copper(II) perchlorate hexahydrate (0.3705 g,1 mmol, Sigma–Aldrich, 98%) in methanol (50 ml). The reaction was refluxed for 24 h. The resulting greenish-blue mixture was then cooled to ambient temperature and filtered to remove excess solids. The solvent was removed in vacuo to give a deep-purple solid (yield 0.4448 g, 94.8%; m.p. 492.5–495 K). Selected IR data (KBr pellet, ν, cm-1): 3390 (m, N—H), 1686 (s, CN), 1571 (m, NH2), 1547 (m, CC), 1346 (m, C—O), 1144 (s, ClO4), 1088 (s, ClO4). Diffuse reflectance (λmax, nm): 583.0. Visible (2 mM in MeOH, λmax, nm): 621.4. Analysis, calculated for [Cu(L3m)(ClO4)](ClO4), (C9H13N5O9Cl2Cu) (MW = 469.5): C 23.00, H 2.77, N 14.91%; found: C 23.13, H 2.76, N 15.04%. ESI+ MS (m/z): 371 [Cu(L3m)(ClO4)+H]2+, 271 [Cu(L3m)]2+.

Suitable single crystals of (I) were obtained as blue columns from a methanol solution of the initial product by slow evaporation at 283 K over one week.

Refinement top

H atoms bonded to C and N were positioned geometrically and refined using a riding model, with N—H = 0.88 Å and C—H = 0.98, 0.99 or 0.95 Å for methyl, methylene and aromatic H, and with Uiso(H) = 1.2Ueq(C,N). The H atom bonded to the methanol O atom was located in a difference Fourier map and refined with an O—H distance restraint of 0.75 (3) Å.

Computing details top

Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000) and SHELXTL (Sheldrick, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2010).

Figures top
[Figure 1] Fig. 1. The molecular structure of complex (I), with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
[Figure 2] Fig. 2. A view of dimer formation in (I), showing the N—H···O hydrogen bonds (dashed lines). Weakly coordinated perchlorate aions have been omitted for clarity. [Symmetry code: (iii) -x + 1, -y + 1, -z + 2.] [All atoms must have unique labels. Please send revised plot]
[Figure 3] Fig. 3. A view of the crystal packing of (I) in the (100) plane, showing how the hydrogen bonds (dashed lines) involving perchlorate counter-ions form a two-dimensional layer. All H atoms not involved in the depicted interactions and hydrogen bonds within the dimer and the two-dimensional layer have been omitted for clarity. [Symmetry codes: (i) -x+1, -y+2, -z+1; (ii) -x+1, -y+1, -z+1; (v) -x, -y+1, -z+1; (vi) x-1, y, z.]
Methanol[1-(methoxymethanimidoyl)-2-(pyridin-2- ylmethyl)guanidine]bis(perchlorato)copper(II) top
Crystal data top
[Cu(ClO4)2(C9H13N5O)(CH4O)]Z = 2
Mr = 501.73F(000) = 510
Triclinic, P1Dx = 1.839 Mg m3
Hall symbol: -P 1Melting point: 495.0 K
a = 8.034 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.804 (3) ÅCell parameters from 5357 reflections
c = 12.093 (3) Åθ = 2.4–27.6°
α = 74.720 (4)°µ = 1.56 mm1
β = 80.455 (4)°T = 150 K
γ = 86.176 (4)°Column, blue
V = 905.9 (4) Å30.30 × 0.15 × 0.10 mm
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer
4119 independent reflections
Radiation source: sealed tube3857 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.014
ω scansθmax = 27.6°, θmin = 2.2°
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
h = 1010
Tmin = 0.656, Tmax = 0.746k = 1212
8026 measured reflectionsl = 1515
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H atoms treated by a mixture of independent and constrained refinement
S = 1.07 w = 1/[σ2(Fo2) + (0.0401P)2 + 0.7806P]
where P = (Fo2 + 2Fc2)/3
4119 reflections(Δ/σ)max = 0.001
259 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = 0.27 e Å3
Crystal data top
[Cu(ClO4)2(C9H13N5O)(CH4O)]γ = 86.176 (4)°
Mr = 501.73V = 905.9 (4) Å3
Triclinic, P1Z = 2
a = 8.034 (2) ÅMo Kα radiation
b = 9.804 (3) ŵ = 1.56 mm1
c = 12.093 (3) ÅT = 150 K
α = 74.720 (4)°0.30 × 0.15 × 0.10 mm
β = 80.455 (4)°
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer
4119 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
3857 reflections with I > 2σ(I)
Tmin = 0.656, Tmax = 0.746Rint = 0.014
8026 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0310 restraints
wR(F2) = 0.081H atoms treated by a mixture of independent and constrained refinement
S = 1.07Δρmax = 0.47 e Å3
4119 reflectionsΔρmin = 0.27 e Å3
259 parameters
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cu10.28810 (3)0.78462 (2)0.71615 (2)0.0218 (1)
Cl10.12760 (6)0.73533 (5)1.01644 (4)0.0274 (1)
Cl20.38940 (6)0.80286 (5)0.40055 (4)0.0249 (1)
O10.68822 (19)0.76408 (15)0.89641 (14)0.0285 (4)
O20.23440 (19)0.99142 (15)0.65346 (14)0.0263 (4)
O30.0930 (2)0.78386 (19)0.89958 (14)0.0367 (5)
O40.1728 (3)0.58684 (19)1.0403 (2)0.0527 (7)
O50.2676 (2)0.8100 (2)1.03095 (16)0.0437 (6)
O60.0189 (2)0.7585 (2)1.09430 (15)0.0469 (6)
O70.3912 (3)0.65291 (19)0.44288 (17)0.0570 (7)
O80.2231 (2)0.8571 (3)0.39177 (17)0.0602 (8)
O90.4607 (2)0.8636 (2)0.47813 (15)0.0410 (5)
O100.4936 (2)0.84241 (16)0.28729 (14)0.0324 (5)
N10.4771 (2)0.82838 (17)0.77985 (15)0.0232 (5)
N20.3498 (2)0.58576 (17)0.74996 (15)0.0234 (5)
N30.0938 (2)0.72402 (18)0.66206 (14)0.0231 (5)
N40.5002 (2)0.38271 (18)0.83200 (16)0.0305 (5)
N50.5686 (2)0.59538 (18)0.85322 (15)0.0248 (5)
C10.7007 (3)0.9073 (2)0.9044 (2)0.0324 (7)
C20.5720 (2)0.7379 (2)0.83952 (17)0.0224 (5)
C30.4673 (3)0.5222 (2)0.80801 (17)0.0235 (5)
C40.2400 (3)0.4978 (2)0.71433 (19)0.0275 (6)
C50.0916 (3)0.5849 (2)0.67133 (17)0.0250 (5)
C60.0419 (3)0.5241 (2)0.64272 (19)0.0308 (6)
C70.1750 (3)0.6098 (3)0.60346 (19)0.0333 (7)
C80.1720 (3)0.7538 (3)0.59397 (19)0.0301 (6)
C90.0365 (3)0.8075 (2)0.62329 (18)0.0276 (6)
C100.1438 (3)1.0781 (2)0.7250 (2)0.0344 (7)
H10.500000.918300.766800.0280*
H1A0.735500.968800.826700.0490*
H1B0.784400.910200.954100.0490*
H1C0.590600.940200.937700.0490*
H4A0.440200.327600.807900.0370*
H4B0.581900.346100.871900.0370*
H4C0.199900.418000.780900.0330*
H4D0.303900.458400.652000.0330*
H50.639800.543700.896200.0300*
H60.041500.425200.650100.0370*
H70.267100.570700.583300.0400*
H80.262400.814500.567600.0360*
H90.034200.906300.616100.0330*
H10A0.027701.045700.751300.0520*
H10B0.142301.177000.679600.0520*
H10C0.200101.070500.792400.0520*
H110.312 (4)1.026 (3)0.618 (2)0.034 (8)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cu10.0201 (1)0.0176 (1)0.0280 (1)0.0018 (1)0.0070 (1)0.0046 (1)
Cl10.0274 (2)0.0271 (2)0.0261 (2)0.0042 (2)0.0050 (2)0.0045 (2)
Cl20.0231 (2)0.0234 (2)0.0283 (2)0.0026 (2)0.0028 (2)0.0071 (2)
O10.0274 (7)0.0261 (7)0.0349 (8)0.0040 (6)0.0129 (6)0.0088 (6)
O20.0232 (7)0.0206 (7)0.0330 (8)0.0013 (6)0.0051 (6)0.0031 (6)
O30.0282 (8)0.0530 (10)0.0262 (8)0.0066 (7)0.0048 (6)0.0070 (7)
O40.0570 (12)0.0307 (9)0.0778 (14)0.0154 (8)0.0388 (11)0.0132 (9)
O50.0440 (10)0.0436 (10)0.0453 (10)0.0075 (8)0.0152 (8)0.0079 (8)
O60.0404 (10)0.0623 (12)0.0310 (9)0.0054 (9)0.0064 (7)0.0087 (8)
O70.0949 (17)0.0241 (9)0.0460 (11)0.0154 (10)0.0090 (11)0.0074 (8)
O80.0254 (9)0.1061 (18)0.0411 (11)0.0139 (10)0.0066 (8)0.0080 (11)
O90.0406 (9)0.0490 (10)0.0394 (9)0.0115 (8)0.0054 (7)0.0198 (8)
O100.0348 (8)0.0265 (8)0.0344 (8)0.0061 (6)0.0055 (7)0.0107 (6)
N10.0207 (8)0.0183 (8)0.0305 (9)0.0008 (6)0.0049 (7)0.0056 (6)
N20.0245 (8)0.0190 (8)0.0268 (8)0.0010 (6)0.0058 (7)0.0052 (6)
N30.0216 (8)0.0243 (8)0.0225 (8)0.0008 (6)0.0030 (6)0.0049 (6)
N40.0384 (10)0.0202 (8)0.0345 (10)0.0061 (7)0.0139 (8)0.0065 (7)
N50.0252 (8)0.0215 (8)0.0271 (9)0.0060 (6)0.0087 (7)0.0042 (6)
C10.0293 (10)0.0281 (11)0.0452 (13)0.0010 (8)0.0123 (9)0.0153 (9)
C20.0197 (8)0.0242 (9)0.0227 (9)0.0010 (7)0.0019 (7)0.0064 (7)
C30.0269 (9)0.0207 (9)0.0213 (9)0.0012 (7)0.0011 (7)0.0045 (7)
C40.0303 (10)0.0204 (9)0.0327 (11)0.0011 (8)0.0070 (8)0.0068 (8)
C50.0253 (9)0.0270 (10)0.0217 (9)0.0030 (8)0.0021 (8)0.0050 (8)
C60.0312 (11)0.0323 (11)0.0301 (11)0.0071 (9)0.0024 (9)0.0100 (9)
C70.0271 (10)0.0469 (13)0.0275 (11)0.0102 (9)0.0033 (8)0.0108 (9)
C80.0225 (9)0.0413 (12)0.0253 (10)0.0019 (9)0.0052 (8)0.0064 (9)
C90.0255 (10)0.0300 (10)0.0262 (10)0.0012 (8)0.0040 (8)0.0060 (8)
C100.0301 (11)0.0269 (11)0.0460 (13)0.0052 (9)0.0043 (10)0.0114 (10)
Geometric parameters (Å, º) top
Cu1—N11.9315 (17)N5—C21.364 (3)
Cu1—N21.9319 (17)N5—C31.381 (3)
Cu1—N31.9711 (17)N5—H50.8800
Cu1—O22.0132 (16)N4—C31.339 (3)
Cu1—O32.4935 (17)N4—H4A0.8800
Cu1—O92.9074 (19)N4—H4B0.8800
Cl1—O31.4350 (17)C4—C51.503 (3)
Cl1—O41.4412 (18)C4—H4C0.9900
Cl1—O51.4403 (18)C4—H4D0.9900
Cl1—O61.4256 (18)C9—C81.375 (3)
Cl2—O71.4235 (19)C9—H90.9500
Cl2—O81.4150 (19)C5—C61.394 (3)
Cl2—O91.4430 (17)C6—C71.383 (3)
Cl2—O101.4527 (16)C6—H60.9500
O2—C101.448 (3)C8—C71.387 (3)
O2—H110.74 (3)C8—H80.9500
N2—C31.297 (3)C7—H70.9500
N2—C41.460 (3)C1—H1A0.9800
N1—C21.283 (3)C1—H1B0.9800
N1—H10.8800C1—H1C0.9800
N3—C51.340 (3)C10—H10A0.9800
N3—C91.353 (3)C10—H10B0.9800
O1—C21.323 (2)C10—H10C0.9800
O1—C11.444 (3)
N1—Cu1—N292.08 (7)C3—N4—H4A120.0
N1—Cu1—N3174.89 (7)C3—N4—H4B120.0
N2—Cu1—N383.78 (7)H4A—N4—H4B120.0
N1—Cu1—O291.42 (7)Cl2—O9—Cu1113.57 (9)
N2—Cu1—O2170.60 (7)N1—C2—O1127.18 (19)
N3—Cu1—O293.13 (7)N1—C2—N5124.15 (19)
N1—Cu1—O391.34 (7)O1—C2—N5108.67 (17)
N2—Cu1—O398.56 (7)N2—C3—N4124.49 (19)
N3—Cu1—O386.34 (6)N2—C3—N5121.65 (18)
O2—Cu1—O390.08 (6)N4—C3—N5113.85 (18)
N1—Cu1—O993.85 (6)N2—C4—C5109.72 (17)
N2—Cu1—O997.51 (6)N2—C4—H4C109.7
N3—Cu1—O989.66 (6)C5—C4—H4C109.7
O2—Cu1—O973.54 (6)N2—C4—H4D109.7
O3—Cu1—O9162.91 (6)C5—C4—H4D109.7
O8—Cl2—O7111.06 (15)H4C—C4—H4D108.2
O8—Cl2—O9109.60 (13)N3—C9—C8122.0 (2)
O7—Cl2—O9109.19 (13)N3—C9—H9119.0
O8—Cl2—O10109.49 (11)C8—C9—H9119.0
O7—Cl2—O10109.49 (11)N3—C5—C6121.63 (19)
O9—Cl2—O10107.93 (10)N3—C5—C4116.66 (18)
O6—Cl1—O3109.14 (11)C6—C5—C4121.71 (19)
O6—Cl1—O5109.90 (12)C7—C6—C5119.0 (2)
O3—Cl1—O5110.17 (11)C7—C6—H6120.5
O6—Cl1—O4110.21 (13)C5—C6—H6120.5
O3—Cl1—O4109.26 (12)C9—C8—C7119.1 (2)
O5—Cl1—O4108.14 (12)C9—C8—H8120.4
C10—O2—Cu1122.85 (14)C7—C8—H8120.4
C10—O2—H11112 (2)C6—C7—C8119.1 (2)
Cu1—O2—H11109 (2)C6—C7—H7120.5
C3—N2—C4117.51 (17)C8—C7—H7120.5
C3—N2—Cu1127.33 (14)O1—C1—H1A109.5
C4—N2—Cu1114.90 (13)O1—C1—H1B109.5
C2—N1—Cu1125.70 (14)H1A—C1—H1B109.5
C2—N1—H1117.1O1—C1—H1C109.5
Cu1—N1—H1117.1H1A—C1—H1C109.5
C5—N3—C9119.11 (18)H1B—C1—H1C109.5
C5—N3—Cu1114.56 (14)O2—C10—H10A109.5
C9—N3—Cu1126.25 (15)O2—C10—H10B109.5
C2—O1—C1118.04 (16)H10A—C10—H10B109.5
Cl1—O3—Cu1128.06 (9)O2—C10—H10C109.5
C2—N5—C3128.02 (17)H10A—C10—H10C109.5
C2—N5—H5116.0H10B—C10—H10C109.5
C3—N5—H5116.0
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O10i0.882.263.129 (3)167
N4—H4A···O10ii0.882.252.932 (3)134
N4—H4B···O4iii0.882.593.328 (3)143
N4—H4B···O5iii0.882.112.950 (3)159
N5—H5···O4iii0.882.032.889 (3)167
O2—H11···O9i0.75 (3)2.18 (3)2.919 (3)176
C4—H4C···O6iv0.992.373.316 (3)159
C7—H7···O7v0.952.583.413 (4)146
C8—H8···O9vi0.952.593.461 (3)152
Symmetry codes: (i) x+1, y+2, z+1; (ii) x+1, y+1, z+1; (iii) x+1, y+1, z+2; (iv) x, y+1, z+2; (v) x, y+1, z+1; (vi) x1, y, z.

Experimental details

Crystal data
Chemical formula[Cu(ClO4)2(C9H13N5O)(CH4O)]
Mr501.73
Crystal system, space groupTriclinic, P1
Temperature (K)150
a, b, c (Å)8.034 (2), 9.804 (3), 12.093 (3)
α, β, γ (°)74.720 (4), 80.455 (4), 86.176 (4)
V3)905.9 (4)
Z2
Radiation typeMo Kα
µ (mm1)1.56
Crystal size (mm)0.30 × 0.15 × 0.10
Data collection
DiffractometerBruker SMART APEX CCD area-detector
diffractometer
Absorption correctionMulti-scan
(SADABS; Sheldrick, 1996)
Tmin, Tmax0.656, 0.746
No. of measured, independent and
observed [I > 2σ(I)] reflections
8026, 4119, 3857
Rint0.014
(sin θ/λ)max1)0.652
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.031, 0.081, 1.07
No. of reflections4119
No. of parameters259
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.47, 0.27

Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2000) and SHELXTL (Sheldrick, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), publCIF (Westrip, 2010).

Selected geometric parameters (Å, º) top
Cu1—N11.9315 (17)Cu1—O22.0132 (16)
Cu1—N21.9319 (17)Cu1—O32.4935 (17)
Cu1—N31.9711 (17)Cu1—O92.9074 (19)
N1—Cu1—N292.08 (7)N3—Cu1—O293.13 (7)
N1—Cu1—N3174.89 (7)N1—Cu1—O391.34 (7)
N2—Cu1—N383.78 (7)N2—Cu1—O398.56 (7)
N1—Cu1—O291.42 (7)N3—Cu1—O386.34 (6)
N2—Cu1—O2170.60 (7)O2—Cu1—O390.08 (6)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O10i0.882.263.129 (3)167
N4—H4A···O10ii0.882.252.932 (3)134
N4—H4B···O4iii0.882.593.328 (3)143
N4—H4B···O5iii0.882.112.950 (3)159
N5—H5···O4iii0.882.032.889 (3)167
O2—H11···O9i0.75 (3)2.18 (3)2.919 (3)176
C4—H4C···O6iv0.992.373.316 (3)159
C7—H7···O7v0.952.583.413 (4)146
C8—H8···O9vi0.952.593.461 (3)152
Symmetry codes: (i) x+1, y+2, z+1; (ii) x+1, y+1, z+1; (iii) x+1, y+1, z+2; (iv) x, y+1, z+2; (v) x, y+1, z+1; (vi) x1, y, z.
 

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