Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807050088/fl2167sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807050088/fl2167Isup2.hkl |
CCDC reference: 667381
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.002 Å
- R factor = 0.032
- wR factor = 0.088
- Data-to-parameter ratio = 12.3
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.98 PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT318_ALERT_2_C Check Hybridisation of N1 in Main Residue . ?
Alert level G ABSTM02_ALERT_3_G When printed, the submitted absorption T values will be replaced by the scaled T values. Since the ratio of scaled T's is identical to the ratio of reported T values, the scaling does not imply a change to the absorption corrections used in the study. Ratio of Tmax expected/reported 0.983 Tmax scaled 0.983 Tmin scaled 0.884 REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 30.68 From the CIF: _reflns_number_total 3150 Count of symmetry unique reflns 3412 Completeness (_total/calc) 92.32% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K PLAT791_ALERT_1_G Confirm the Absolute Configuration of C4 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C5 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C10 = . R PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 1
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 8 ALERT level G = General alerts; check 5 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
For similar structures see: Bakare et al. (2005); Couldwell et al. (1985); Mondal et al. (2003).
To sodium hydride (NaH, 100 mg, 4.16 mmol) was added a solution of 12-methoxy-podocarpa-8,11,13-trien-15-oic acid (500 mg, 1.74 mmol) in dry benzene (15 ml). The resulting mixture was stirred for 30 minutes. Oxalyl chloride (2 ml) was added slowly and stirring continued for a further 1 h. The mixture was then filtered and the solvent removed in vacuo to give the the acid chloride, 12-methoxypodocarpa-8, 11,13-trienoyl chloride, as a yellow oil. The acid chloride, in benzene (10 ml), was added slowly to a stirred solution of 3-(aminomethyl)pyridine (468 mg, 4.33 mmol) in dry benzene (30 ml) at 0 °C. The reaction mixture was stirred at room temperature overnight, filtered under suction and the filtrate concentrated in vacuo to obtain a a yellow oil. The oily residue was treated with a hexane:ethyl acetate (75:25) to precipitate a white solid (344 mg, 53.0%). The white solid obtained was recrystallized from hexane:ethyl acetate (75:25).
The methyl H atoms were constrained to an ideal geometry with C—H distances of 0.98 Å and Uiso(H) = 1.5Ueq(C), but each group was allowed to rotate freely about its C—C bond. The position of the amine H atom was refined freely along with an isotropic displacement parameter. All other H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms with C—H distances in the range 0.95–1.00 Å and Uiso(H) = 1.2Ueq(C). While crystallizing in a chiral space group the moleculee does not contain any atoms heavier than Si and the absolute configuration could not be determined by X-ray methods. Hence the refinement was carried out with the Friedel pairs averaged.
As part of our anti-inflammatory and anti-cancer discovery program, we are exploring the derivatization of the C-4 carboxyl group of podocarpic acid (Bakare et al., 2005) in order to design new molecules that can modulate the lipoxygenase and cyclooxygenase pathways. Consequently, the title compound, (I), was synthesized as one of a series of amide derivatives under investigation.
The geometric conformation parameters of the three fused six-membered rings in (I), Fig. 1 and Table 1, are similar to those observed previously (Couldwell et al., 1985; Bakare et al., 2005; Mondal et al., 2003). Since this compound was made from natural podocarpic acid and the stereocenters were intact during reactions, the stereochemistry of the compound is as shown. As expected, Ring A adopts the usual chair conformation, while Ring B is observed in the half-chair as a result of being fused to the planar aromatic ring C. The benzylic carbon-C19 to amide-N1 bond is almost coplanar with the amide carbonyl C15—O1 bond, with a dihedral angle at 6.8 (4)°. This near co-planarity is probably due to the partial double bond character of the C15—N1 bond (C15—N1, 1.348 (2) Å). Interestingly, the fused three ring system of the podocarpic acid scaffold appears perpendicular to this plane giving the molecule a bowl-like appearance. N1—H···N2 hydrogen bonds link the molecules into chains in the a direction. In addition, these chains are linked by weak intermolecular Ar—H···O interactions comprising the carbonyl O1 atom of one molecule and the aromatic C23—H23 of another. (Fig. 2 and Table 2).
For similar structures see: Bakare et al. (2005); Couldwell et al. (1985); Mondal et al. (2003).
Data collection: APEX2 (Bruker, 2006); cell refinement: APEX2 (Bruker, 2006); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 2000); software used to prepare material for publication: SHELXTL (Bruker, 2000).
C24H30N2O2 | F(000) = 408 |
Mr = 378.50 | Dx = 1.216 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.0164 (4) Å | Cell parameters from 9074 reflections |
b = 7.9267 (4) Å | θ = 2.2–30.7° |
c = 18.5843 (11) Å | µ = 0.08 mm−1 |
β = 90.871 (6)° | T = 293 K |
V = 1033.48 (10) Å3 | Plate, colourless |
Z = 2 | 0.55 × 0.45 × 0.22 mm |
Bruker APEXII CCD diffractometer | 3150 independent reflections |
Radiation source: fine-focus sealed tube | 3081 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.013 |
φ and ω scans | θmax = 30.7°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −10→10 |
Tmin = 0.900, Tmax = 1.000 | k = 0→11 |
11646 measured reflections | l = 0→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0665P)2 + 0.0836P] where P = (Fo2 + 2Fc2)/3 |
3150 reflections | (Δ/σ)max = 0.002 |
256 parameters | Δρmax = 0.33 e Å−3 |
1 restraint | Δρmin = −0.19 e Å−3 |
C24H30N2O2 | V = 1033.48 (10) Å3 |
Mr = 378.50 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 7.0164 (4) Å | µ = 0.08 mm−1 |
b = 7.9267 (4) Å | T = 293 K |
c = 18.5843 (11) Å | 0.55 × 0.45 × 0.22 mm |
β = 90.871 (6)° |
Bruker APEXII CCD diffractometer | 3150 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 3081 reflections with I > 2σ(I) |
Tmin = 0.900, Tmax = 1.000 | Rint = 0.013 |
11646 measured reflections |
R[F2 > 2σ(F2)] = 0.032 | 1 restraint |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.33 e Å−3 |
3150 reflections | Δρmin = −0.19 e Å−3 |
256 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.69388 (13) | 0.33391 (13) | 0.38936 (5) | 0.0233 (2) | |
O2 | 0.86838 (16) | 0.73577 (15) | −0.03721 (5) | 0.0299 (2) | |
N1 | 0.48902 (13) | 0.54988 (14) | 0.40643 (5) | 0.0184 (2) | |
H1C | 0.3837 | 0.5984 | 0.3944 | 0.022* | |
N2 | 1.10503 (14) | 0.72422 (15) | 0.41192 (6) | 0.0201 (2) | |
C1 | 0.69900 (18) | 0.33687 (17) | 0.17249 (6) | 0.0218 (2) | |
H1A | 0.6116 | 0.3002 | 0.1347 | 0.026* | |
H1B | 0.8251 | 0.3443 | 0.1520 | 0.026* | |
C2 | 0.70219 (19) | 0.20383 (17) | 0.23270 (7) | 0.0232 (2) | |
H2A | 0.7330 | 0.0945 | 0.2125 | 0.028* | |
H2B | 0.8007 | 0.2324 | 0.2678 | 0.028* | |
C3 | 0.50940 (19) | 0.19362 (17) | 0.27011 (7) | 0.0222 (2) | |
H3A | 0.5203 | 0.1147 | 0.3099 | 0.027* | |
H3B | 0.4157 | 0.1488 | 0.2363 | 0.027* | |
C4 | 0.43549 (15) | 0.36460 (16) | 0.29934 (6) | 0.0169 (2) | |
C5 | 0.44139 (15) | 0.49801 (15) | 0.23627 (6) | 0.0161 (2) | |
H5A | 0.3558 | 0.4519 | 0.1990 | 0.019* | |
C6 | 0.35943 (17) | 0.67454 (16) | 0.25265 (6) | 0.0184 (2) | |
H6A | 0.2462 | 0.6636 | 0.2816 | 0.022* | |
H6B | 0.4526 | 0.7404 | 0.2796 | 0.022* | |
C7 | 0.30917 (17) | 0.76442 (17) | 0.18135 (7) | 0.0211 (2) | |
H7A | 0.1955 | 0.7133 | 0.1605 | 0.025* | |
H7B | 0.2807 | 0.8818 | 0.1912 | 0.025* | |
C8 | 0.46809 (17) | 0.75558 (17) | 0.12738 (6) | 0.0189 (2) | |
C9 | 0.61628 (16) | 0.63630 (16) | 0.13341 (6) | 0.0173 (2) | |
C10 | 0.63800 (16) | 0.51509 (16) | 0.19860 (6) | 0.0161 (2) | |
C11 | 0.75564 (17) | 0.63164 (18) | 0.07919 (6) | 0.0203 (2) | |
H11A | 0.8564 | 0.5558 | 0.0832 | 0.024* | |
C12 | 0.74398 (18) | 0.73953 (18) | 0.01969 (7) | 0.0229 (2) | |
C13 | 0.59769 (18) | 0.8604 (2) | 0.01412 (7) | 0.0255 (3) | |
H13A | 0.5912 | 0.9341 | −0.0248 | 0.031* | |
C14 | 0.46337 (18) | 0.86725 (19) | 0.06800 (7) | 0.0248 (3) | |
H14A | 0.3671 | 0.9477 | 0.0650 | 0.030* | |
C15 | 0.55164 (16) | 0.41437 (16) | 0.36840 (6) | 0.0172 (2) | |
C16 | 0.22613 (16) | 0.33573 (18) | 0.32146 (7) | 0.0231 (2) | |
H16A | 0.2221 | 0.2535 | 0.3593 | 0.035* | |
H16B | 0.1536 | 0.2957 | 0.2807 | 0.035* | |
H16C | 0.1729 | 0.4400 | 0.3380 | 0.035* | |
C17 | 0.79681 (16) | 0.59029 (18) | 0.24879 (6) | 0.0202 (2) | |
H17A | 0.9125 | 0.6023 | 0.2223 | 0.030* | |
H17B | 0.8185 | 0.5160 | 0.2889 | 0.030* | |
H17C | 0.7571 | 0.6987 | 0.2660 | 0.030* | |
C18 | 1.0220 (2) | 0.6164 (2) | −0.03192 (8) | 0.0342 (3) | |
H18A | 1.0931 | 0.6178 | −0.0757 | 0.051* | |
H18B | 0.9712 | 0.5055 | −0.0244 | 0.051* | |
H18C | 1.1044 | 0.6462 | 0.0078 | 0.051* | |
C19 | 0.60253 (16) | 0.61336 (18) | 0.46844 (6) | 0.0192 (2) | |
H19A | 0.6479 | 0.5188 | 0.4970 | 0.023* | |
H19B | 0.5223 | 0.6826 | 0.4986 | 0.023* | |
C20 | 0.77156 (16) | 0.71681 (16) | 0.44370 (6) | 0.0166 (2) | |
C21 | 0.95294 (16) | 0.64312 (17) | 0.43840 (6) | 0.0185 (2) | |
H21A | 0.9687 | 0.5325 | 0.4540 | 0.022* | |
C22 | 1.08051 (17) | 0.88544 (18) | 0.39003 (6) | 0.0207 (2) | |
H22A | 1.1844 | 0.9420 | 0.3710 | 0.025* | |
C23 | 0.90734 (18) | 0.97176 (17) | 0.39450 (6) | 0.0214 (2) | |
H23A | 0.8965 | 1.0835 | 0.3797 | 0.026* | |
C24 | 0.75155 (17) | 0.88529 (18) | 0.42179 (6) | 0.0200 (2) | |
H24B | 0.6344 | 0.9392 | 0.4255 | 0.024* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0218 (4) | 0.0242 (5) | 0.0238 (4) | 0.0078 (4) | 0.0000 (3) | 0.0023 (4) |
O2 | 0.0338 (5) | 0.0307 (6) | 0.0254 (4) | 0.0018 (4) | 0.0094 (4) | 0.0072 (4) |
N1 | 0.0136 (4) | 0.0216 (5) | 0.0198 (4) | 0.0030 (4) | 0.0005 (3) | −0.0002 (4) |
N2 | 0.0153 (4) | 0.0221 (5) | 0.0228 (4) | 0.0023 (4) | 0.0015 (3) | −0.0002 (4) |
C1 | 0.0267 (6) | 0.0193 (6) | 0.0194 (5) | 0.0052 (5) | 0.0040 (4) | −0.0005 (5) |
C2 | 0.0269 (6) | 0.0184 (6) | 0.0243 (5) | 0.0056 (5) | 0.0043 (4) | 0.0012 (5) |
C3 | 0.0256 (5) | 0.0148 (5) | 0.0262 (6) | −0.0003 (5) | 0.0010 (4) | 0.0002 (5) |
C4 | 0.0148 (4) | 0.0150 (5) | 0.0208 (5) | −0.0012 (4) | 0.0011 (4) | 0.0017 (4) |
C5 | 0.0145 (4) | 0.0152 (5) | 0.0184 (4) | −0.0005 (4) | −0.0002 (4) | 0.0005 (4) |
C6 | 0.0185 (5) | 0.0165 (5) | 0.0204 (5) | 0.0018 (4) | 0.0014 (4) | 0.0006 (4) |
C7 | 0.0199 (5) | 0.0208 (6) | 0.0226 (5) | 0.0039 (4) | 0.0012 (4) | 0.0039 (5) |
C8 | 0.0182 (5) | 0.0194 (5) | 0.0191 (5) | −0.0012 (4) | −0.0022 (4) | 0.0021 (4) |
C9 | 0.0172 (5) | 0.0182 (5) | 0.0163 (4) | −0.0020 (4) | −0.0012 (4) | 0.0005 (4) |
C10 | 0.0152 (4) | 0.0166 (5) | 0.0164 (4) | 0.0003 (4) | 0.0004 (3) | 0.0007 (4) |
C11 | 0.0194 (5) | 0.0224 (6) | 0.0190 (5) | −0.0012 (5) | 0.0006 (4) | 0.0020 (4) |
C12 | 0.0240 (5) | 0.0249 (6) | 0.0197 (5) | −0.0037 (5) | 0.0012 (4) | 0.0024 (5) |
C13 | 0.0271 (6) | 0.0274 (7) | 0.0219 (5) | −0.0012 (5) | −0.0024 (4) | 0.0087 (5) |
C14 | 0.0230 (5) | 0.0251 (6) | 0.0261 (6) | 0.0018 (5) | −0.0034 (4) | 0.0080 (5) |
C15 | 0.0151 (4) | 0.0181 (5) | 0.0185 (5) | −0.0002 (4) | 0.0035 (4) | 0.0035 (4) |
C16 | 0.0158 (5) | 0.0217 (6) | 0.0319 (6) | −0.0044 (4) | 0.0027 (4) | 0.0023 (5) |
C17 | 0.0150 (5) | 0.0267 (6) | 0.0190 (5) | −0.0019 (4) | −0.0013 (4) | 0.0017 (4) |
C18 | 0.0329 (7) | 0.0359 (8) | 0.0342 (7) | 0.0028 (6) | 0.0139 (6) | 0.0095 (6) |
C19 | 0.0156 (4) | 0.0260 (6) | 0.0159 (4) | 0.0011 (4) | 0.0032 (4) | 0.0004 (4) |
C20 | 0.0153 (5) | 0.0214 (6) | 0.0131 (4) | 0.0023 (4) | 0.0007 (3) | −0.0009 (4) |
C21 | 0.0162 (5) | 0.0209 (5) | 0.0184 (5) | 0.0034 (4) | 0.0004 (4) | 0.0015 (4) |
C22 | 0.0181 (5) | 0.0212 (6) | 0.0229 (5) | −0.0013 (4) | 0.0020 (4) | −0.0018 (5) |
C23 | 0.0239 (5) | 0.0169 (5) | 0.0233 (5) | 0.0031 (4) | 0.0015 (4) | −0.0005 (4) |
C24 | 0.0183 (5) | 0.0215 (6) | 0.0202 (5) | 0.0058 (4) | 0.0007 (4) | −0.0029 (5) |
O1—C15 | 1.2420 (14) | C8—C14 | 1.4148 (17) |
O2—C12 | 1.3817 (15) | C9—C11 | 1.4152 (15) |
O2—C18 | 1.4365 (19) | C9—C10 | 1.5519 (16) |
N1—C15 | 1.3623 (16) | C10—C17 | 1.5606 (16) |
N1—C19 | 1.4790 (15) | C11—C12 | 1.3993 (17) |
N1—H1C | 0.8600 | C11—H11A | 0.9300 |
N2—C21 | 1.3455 (16) | C12—C13 | 1.407 (2) |
N2—C22 | 1.3513 (18) | C13—C14 | 1.3864 (18) |
C1—C2 | 1.5375 (18) | C13—H13A | 0.9300 |
C1—C10 | 1.5558 (17) | C14—H14A | 0.9300 |
C1—H1A | 0.9700 | C16—H16A | 0.9600 |
C1—H1B | 0.9700 | C16—H16B | 0.9600 |
C2—C3 | 1.5324 (17) | C16—H16C | 0.9600 |
C2—H2A | 0.9700 | C17—H17A | 0.9600 |
C2—H2B | 0.9700 | C17—H17B | 0.9600 |
C3—C4 | 1.5522 (18) | C17—H17C | 0.9600 |
C3—H3A | 0.9700 | C18—H18A | 0.9600 |
C3—H3B | 0.9700 | C18—H18B | 0.9600 |
C4—C16 | 1.5485 (15) | C18—H18C | 0.9600 |
C4—C15 | 1.5606 (16) | C19—C20 | 1.5188 (17) |
C4—C5 | 1.5796 (16) | C19—H19A | 0.9700 |
C5—C6 | 1.5449 (17) | C19—H19B | 0.9700 |
C5—C10 | 1.5623 (15) | C20—C24 | 1.4026 (18) |
C5—H5A | 0.9800 | C20—C21 | 1.4051 (15) |
C6—C7 | 1.5405 (17) | C21—H21A | 0.9300 |
C6—H6A | 0.9700 | C22—C23 | 1.3980 (17) |
C6—H6B | 0.9700 | C22—H22A | 0.9300 |
C7—C8 | 1.5127 (16) | C23—C24 | 1.3924 (18) |
C7—H7A | 0.9700 | C23—H23A | 0.9300 |
C7—H7B | 0.9700 | C24—H24B | 0.9300 |
C8—C9 | 1.4085 (17) | ||
C12—O2—C18 | 116.36 (11) | C1—C10—C5 | 108.06 (10) |
C15—N1—C19 | 119.89 (10) | C17—C10—C5 | 113.11 (9) |
C15—N1—H1C | 120.1 | C12—C11—C9 | 120.93 (11) |
C19—N1—H1C | 120.1 | C12—C11—H11A | 119.5 |
C21—N2—C22 | 117.64 (11) | C9—C11—H11A | 119.5 |
C2—C1—C10 | 113.38 (10) | O2—C12—C11 | 124.16 (12) |
C2—C1—H1A | 108.9 | O2—C12—C13 | 115.28 (11) |
C10—C1—H1A | 108.9 | C11—C12—C13 | 120.55 (11) |
C2—C1—H1B | 108.9 | C14—C13—C12 | 118.46 (12) |
C10—C1—H1B | 108.9 | C14—C13—H13A | 120.8 |
H1A—C1—H1B | 107.7 | C12—C13—H13A | 120.8 |
C3—C2—C1 | 111.30 (10) | C13—C14—C8 | 122.07 (12) |
C3—C2—H2A | 109.4 | C13—C14—H14A | 119.0 |
C1—C2—H2A | 109.4 | C8—C14—H14A | 119.0 |
C3—C2—H2B | 109.4 | O1—C15—N1 | 120.41 (11) |
C1—C2—H2B | 109.4 | O1—C15—C4 | 122.35 (11) |
H2A—C2—H2B | 108.0 | N1—C15—C4 | 117.23 (10) |
C2—C3—C4 | 114.49 (10) | C4—C16—H16A | 109.5 |
C2—C3—H3A | 108.6 | C4—C16—H16B | 109.5 |
C4—C3—H3A | 108.6 | H16A—C16—H16B | 109.5 |
C2—C3—H3B | 108.6 | C4—C16—H16C | 109.5 |
C4—C3—H3B | 108.6 | H16A—C16—H16C | 109.5 |
H3A—C3—H3B | 107.6 | H16B—C16—H16C | 109.5 |
C16—C4—C3 | 106.69 (10) | C10—C17—H17A | 109.5 |
C16—C4—C15 | 107.74 (9) | C10—C17—H17B | 109.5 |
C3—C4—C15 | 109.60 (10) | H17A—C17—H17B | 109.5 |
C16—C4—C5 | 109.37 (9) | C10—C17—H17C | 109.5 |
C3—C4—C5 | 108.20 (9) | H17A—C17—H17C | 109.5 |
C15—C4—C5 | 114.95 (9) | H17B—C17—H17C | 109.5 |
C6—C5—C10 | 110.10 (9) | O2—C18—H18A | 109.5 |
C6—C5—C4 | 116.50 (9) | O2—C18—H18B | 109.5 |
C10—C5—C4 | 115.08 (9) | H18A—C18—H18B | 109.5 |
C6—C5—H5A | 104.6 | O2—C18—H18C | 109.5 |
C10—C5—H5A | 104.6 | H18A—C18—H18C | 109.5 |
C4—C5—H5A | 104.6 | H18B—C18—H18C | 109.5 |
C7—C6—C5 | 109.30 (9) | N1—C19—C20 | 111.20 (9) |
C7—C6—H6A | 109.8 | N1—C19—H19A | 109.4 |
C5—C6—H6A | 109.8 | C20—C19—H19A | 109.4 |
C7—C6—H6B | 109.8 | N1—C19—H19B | 109.4 |
C5—C6—H6B | 109.8 | C20—C19—H19B | 109.4 |
H6A—C6—H6B | 108.3 | H19A—C19—H19B | 108.0 |
C8—C7—C6 | 112.80 (10) | C24—C20—C21 | 117.53 (11) |
C8—C7—H7A | 109.0 | C24—C20—C19 | 121.78 (11) |
C6—C7—H7A | 109.0 | C21—C20—C19 | 120.60 (11) |
C8—C7—H7B | 109.0 | N2—C21—C20 | 123.45 (12) |
C6—C7—H7B | 109.0 | N2—C21—H21A | 118.3 |
H7A—C7—H7B | 107.8 | C20—C21—H21A | 118.3 |
C9—C8—C14 | 119.37 (11) | N2—C22—C23 | 123.49 (12) |
C9—C8—C7 | 121.94 (10) | N2—C22—H22A | 118.3 |
C14—C8—C7 | 118.65 (11) | C23—C22—H22A | 118.3 |
C8—C9—C11 | 118.56 (11) | C24—C23—C22 | 117.94 (12) |
C8—C9—C10 | 122.77 (10) | C24—C23—H23A | 121.0 |
C11—C9—C10 | 118.62 (10) | C22—C23—H23A | 121.0 |
C9—C10—C1 | 110.06 (9) | C23—C24—C20 | 119.92 (11) |
C9—C10—C17 | 106.91 (10) | C23—C24—H24B | 120.0 |
C1—C10—C17 | 109.63 (10) | C20—C24—H24B | 120.0 |
C9—C10—C5 | 109.06 (9) | ||
C10—C1—C2—C3 | 55.32 (14) | C6—C5—C10—C17 | 67.25 (12) |
C1—C2—C3—C4 | −54.19 (14) | C4—C5—C10—C17 | −66.84 (13) |
C2—C3—C4—C16 | 169.37 (10) | C8—C9—C11—C12 | −1.86 (18) |
C2—C3—C4—C15 | −74.25 (12) | C10—C9—C11—C12 | −179.28 (11) |
C2—C3—C4—C5 | 51.79 (13) | C18—O2—C12—C11 | −2.5 (2) |
C16—C4—C5—C6 | 59.87 (13) | C18—O2—C12—C13 | 178.42 (13) |
C3—C4—C5—C6 | 175.71 (9) | C9—C11—C12—O2 | −176.22 (12) |
C15—C4—C5—C6 | −61.44 (13) | C9—C11—C12—C13 | 2.9 (2) |
C16—C4—C5—C10 | −169.05 (10) | O2—C12—C13—C14 | 177.65 (12) |
C3—C4—C5—C10 | −53.20 (13) | C11—C12—C13—C14 | −1.5 (2) |
C15—C4—C5—C10 | 69.64 (13) | C12—C13—C14—C8 | −0.8 (2) |
C10—C5—C6—C7 | 66.96 (12) | C9—C8—C14—C13 | 1.7 (2) |
C4—C5—C6—C7 | −159.68 (9) | C7—C8—C14—C13 | −176.25 (12) |
C5—C6—C7—C8 | −48.11 (13) | C19—N1—C15—O1 | 6.78 (17) |
C6—C7—C8—C9 | 18.28 (17) | C19—N1—C15—C4 | −174.29 (10) |
C6—C7—C8—C14 | −163.79 (12) | C16—C4—C15—O1 | 123.05 (12) |
C14—C8—C9—C11 | −0.39 (18) | C3—C4—C15—O1 | 7.33 (15) |
C7—C8—C9—C11 | 177.52 (11) | C5—C4—C15—O1 | −114.76 (13) |
C14—C8—C9—C10 | 176.92 (11) | C16—C4—C15—N1 | −55.86 (14) |
C7—C8—C9—C10 | −5.17 (18) | C3—C4—C15—N1 | −171.58 (10) |
C8—C9—C10—C1 | 140.03 (11) | C5—C4—C15—N1 | 66.34 (13) |
C11—C9—C10—C1 | −42.67 (14) | C15—N1—C19—C20 | 77.78 (14) |
C8—C9—C10—C17 | −100.98 (12) | N1—C19—C20—C24 | 79.61 (14) |
C11—C9—C10—C17 | 76.33 (13) | N1—C19—C20—C21 | −96.98 (13) |
C8—C9—C10—C5 | 21.65 (15) | C22—N2—C21—C20 | 0.60 (18) |
C11—C9—C10—C5 | −161.05 (10) | C24—C20—C21—N2 | −1.76 (17) |
C2—C1—C10—C9 | −173.60 (10) | C19—C20—C21—N2 | 174.97 (11) |
C2—C1—C10—C17 | 69.08 (13) | C21—N2—C22—C23 | 0.94 (17) |
C2—C1—C10—C5 | −54.60 (13) | N2—C22—C23—C24 | −1.21 (18) |
C6—C5—C10—C9 | −51.57 (12) | C22—C23—C24—C20 | −0.04 (17) |
C4—C5—C10—C9 | 174.34 (9) | C21—C20—C24—C23 | 1.42 (16) |
C6—C5—C10—C1 | −171.20 (9) | C19—C20—C24—C23 | −175.27 (11) |
C4—C5—C10—C1 | 54.71 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1C···N2i | 0.86 | 2.22 | 3.0311 (14) | 157 |
C23—H23A···O1ii | 0.93 | 2.45 | 3.2386 (16) | 143 |
Symmetry codes: (i) x−1, y, z; (ii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C24H30N2O2 |
Mr | 378.50 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 293 |
a, b, c (Å) | 7.0164 (4), 7.9267 (4), 18.5843 (11) |
β (°) | 90.871 (6) |
V (Å3) | 1033.48 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.55 × 0.45 × 0.22 |
Data collection | |
Diffractometer | Bruker APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.900, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11646, 3150, 3081 |
Rint | 0.013 |
(sin θ/λ)max (Å−1) | 0.718 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.088, 1.04 |
No. of reflections | 3150 |
No. of parameters | 256 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.33, −0.19 |
Computer programs: APEX2 (Bruker, 2006), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 1990), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 2000).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1C···N2i | 0.86 | 2.22 | 3.0311 (14) | 156.5 |
C23—H23A···O1ii | 0.93 | 2.45 | 3.2386 (16) | 142.6 |
Symmetry codes: (i) x−1, y, z; (ii) x, y+1, z. |
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As part of our anti-inflammatory and anti-cancer discovery program, we are exploring the derivatization of the C-4 carboxyl group of podocarpic acid (Bakare et al., 2005) in order to design new molecules that can modulate the lipoxygenase and cyclooxygenase pathways. Consequently, the title compound, (I), was synthesized as one of a series of amide derivatives under investigation.
The geometric conformation parameters of the three fused six-membered rings in (I), Fig. 1 and Table 1, are similar to those observed previously (Couldwell et al., 1985; Bakare et al., 2005; Mondal et al., 2003). Since this compound was made from natural podocarpic acid and the stereocenters were intact during reactions, the stereochemistry of the compound is as shown. As expected, Ring A adopts the usual chair conformation, while Ring B is observed in the half-chair as a result of being fused to the planar aromatic ring C. The benzylic carbon-C19 to amide-N1 bond is almost coplanar with the amide carbonyl C15—O1 bond, with a dihedral angle at 6.8 (4)°. This near co-planarity is probably due to the partial double bond character of the C15—N1 bond (C15—N1, 1.348 (2) Å). Interestingly, the fused three ring system of the podocarpic acid scaffold appears perpendicular to this plane giving the molecule a bowl-like appearance. N1—H···N2 hydrogen bonds link the molecules into chains in the a direction. In addition, these chains are linked by weak intermolecular Ar—H···O interactions comprising the carbonyl O1 atom of one molecule and the aromatic C23—H23 of another. (Fig. 2 and Table 2).